Query psy2194
Match_columns 92
No_of_seqs 106 out of 120
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 18:38:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lsj_B DNA polymerase kappa; R 65.7 1.7 5.7E-05 23.9 0.0 12 48-59 5-16 (26)
2 4ggc_A P55CDC, cell division c 37.5 11 0.00038 24.2 1.0 12 18-29 3-14 (318)
3 4dth_A VGRG protein; alpha-bet 33.8 14 0.00049 30.2 1.2 20 54-73 39-58 (396)
4 2kfp_A Pspto_3016 protein; alp 27.5 32 0.0011 22.6 2.0 26 26-54 66-93 (125)
5 3kbq_A Protein TA0487; structu 13.5 57 0.002 22.8 0.8 41 4-44 130-170 (172)
6 2fki_A Protein YJBR; NESG, GFT 13.1 67 0.0023 20.9 1.0 27 27-54 53-80 (126)
7 3voq_A Target of rapamycin com 11.5 1E+02 0.0034 21.5 1.6 9 57-65 81-89 (125)
8 2vov_A MOPE, surface-associate 10.4 71 0.0024 25.3 0.5 57 11-74 92-180 (336)
9 1w33_A BbcrAsp-1; complement r 9.8 67 0.0023 23.7 0.1 16 28-43 49-64 (181)
10 1kxo_A DIGA16; lipocalin, anti 8.6 1.1E+02 0.0039 20.0 0.9 26 3-28 149-177 (184)
No 1
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=65.73 E-value=1.7 Score=23.86 Aligned_cols=12 Identities=50% Similarity=0.700 Sum_probs=10.0
Q ss_pred CCcccccCCCCe
Q psy2194 48 NKKRFIDKKNAI 59 (92)
Q Consensus 48 ~KKkFIDKKnA~ 59 (92)
.|+-|||||.|.
T Consensus 5 ~K~SFFdKKRse 16 (26)
T 2lsj_B 5 HKKSFFDKKRSE 16 (26)
Confidence 378999999875
No 2
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=37.51 E-value=11 Score=24.19 Aligned_cols=12 Identities=58% Similarity=1.348 Sum_probs=8.0
Q ss_pred ecccccCCCCCC
Q psy2194 18 NKPCRYLPGSPD 29 (92)
Q Consensus 18 ~~~cry~p~s~d 29 (92)
.|.|||.|.+|+
T Consensus 3 ~~~~r~~p~~p~ 14 (318)
T 4ggc_A 3 RKTCRYIPSLPD 14 (318)
T ss_dssp ---CCCCCSSCS
T ss_pred CCCCcccCCCCC
Confidence 478999999983
No 3
>4dth_A VGRG protein; alpha-beta protein, actin cross-linking toxin, G-actin, TOXI; HET: ATP; 1.78A {Vibrio cholerae} PDB: 4dtd_A* 4dtf_A* 4e1c_A* 4e1d_A* 4dtl_A*
Probab=33.75 E-value=14 Score=30.22 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.1
Q ss_pred cCCCCeeEEEEeccCCCCCC
Q psy2194 54 DKKNAITFHLVHRSQKDPLL 73 (92)
Q Consensus 54 DKKnA~TFqLVHRSQ~DPL~ 73 (92)
-|..||+|--||-+|-+||+
T Consensus 39 P~nsaQkFGYVhdaqG~pLF 58 (396)
T 4dth_A 39 PANSAQKFGYVKSAQGDALF 58 (396)
T ss_dssp CTTCCSEEEEEEETTSCEEE
T ss_pred cccchhhccceecCCCCeeE
Confidence 36789999999999999997
No 4
>2kfp_A Pspto_3016 protein; alpha, beta, double-WING, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae} PDB: 3h9x_A
Probab=27.54 E-value=32 Score=22.56 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=19.5
Q ss_pred CCCChHHHHHHhhccccccc--CCCCccccc
Q psy2194 26 GSPDEQEIYRRLIYPSLIAL--GKNKKRFID 54 (92)
Q Consensus 26 ~s~d~~~~y~~~~~~~~im~--~k~KKkFID 54 (92)
-+|++++..|.. |. |.| +|+||.||.
T Consensus 66 ~~Pe~~~~Lr~~--~~-i~PayhmnK~hWis 93 (125)
T 2kfp_A 66 VQPELVGSLRKK--PG-IYPAYHMNKEHWIT 93 (125)
T ss_dssp CCTTTHHHHHHS--TT-EEECSSSCSSSEEE
T ss_pred cCHHHHHHHHhC--CC-CCccccCCCCCeEE
Confidence 367999999885 55 444 589999973
No 5
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=13.53 E-value=57 Score=22.81 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=28.0
Q ss_pred ccccccceeeeEEeecccccCCCCCChHHHHHHhhcccccc
Q psy2194 4 NQVGIDCTSYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIA 44 (92)
Q Consensus 4 ~~~~~~~~~~~~~~~~~cry~p~s~d~~~~y~~~~~~~~im 44 (92)
|.+|..+..++-..++..-.+||.|.|-+---.-+-|.+..
T Consensus 130 N~~g~apG~~~~~~~~~v~~lPGvP~e~~~m~~~~~~~~~~ 170 (172)
T 3kbq_A 130 NPVGTAPGLICAVGGKKVIILPGVPKEMEALLKAMEKDIII 170 (172)
T ss_dssp CSSSSSCEEEEEETTEEEEEECSSHHHHHHHHHHTHHHHCC
T ss_pred CCCCcCCeEEEEECCeEEEEeCCCHHHHHHHHHHHHhhcCC
Confidence 78888887777666666677999998766544445554443
No 6
>2fki_A Protein YJBR; NESG, GFT-alpha-beta, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: d.198.3.1
Probab=13.07 E-value=67 Score=20.88 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=17.9
Q ss_pred CCChHHHHHHhhcccc-cccCCCCccccc
Q psy2194 27 SPDEQEIYRRLIYPSL-IALGKNKKRFID 54 (92)
Q Consensus 27 s~d~~~~y~~~~~~~~-im~~k~KKkFID 54 (92)
+|++++..|. .||+. -.++|+|+.|+.
T Consensus 53 ~pe~~~~L~~-~~~~i~PayhmnK~hWis 80 (126)
T 2fki_A 53 SPELAELLRQ-QHSDVRPSRHLNKAHWST 80 (126)
T ss_dssp CHHHHHHHHH-SCSTTCCCCSSCTTTEEE
T ss_pred CHHHHHHHHh-hCCCeecCCcCCCceeEE
Confidence 5677777755 56752 234789999873
No 7
>3voq_A Target of rapamycin complex 2 subunit mapkap1; PH domain, membrane protein; 2.00A {Homo sapiens}
Probab=11.52 E-value=1e+02 Score=21.52 Aligned_cols=9 Identities=22% Similarity=0.301 Sum_probs=5.3
Q ss_pred CCeeEEEEe
Q psy2194 57 NAITFHLVH 65 (92)
Q Consensus 57 nA~TFqLVH 65 (92)
+...|.||.
T Consensus 81 s~~~Fklv~ 89 (125)
T 3voq_A 81 SHAIFKLTY 89 (125)
T ss_dssp SCEEEEEEE
T ss_pred CcceEEEEE
Confidence 345666665
No 8
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized tryptophan, methanotroph bacterium, kunurenine, copper binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB: 2vox_A* 2vow_A
Probab=10.40 E-value=71 Score=25.26 Aligned_cols=57 Identities=32% Similarity=0.434 Sum_probs=40.2
Q ss_pred eeeeEEeecccccCCCCC------------ChHHHHHHhhcccccccCCCCcccccCCCC--------------------
Q psy2194 11 TSYLLVENKPCRYLPGSP------------DEQEIYRRLIYPSLIALGKNKKRFIDKKNA-------------------- 58 (92)
Q Consensus 11 ~~~~~~~~~~cry~p~s~------------d~~~~y~~~~~~~~im~~k~KKkFIDKKnA-------------------- 58 (92)
.||-|...|...|-|..- |-|+|+|-.- +-+|-.||+-|..
T Consensus 92 ksyslaigktsyydpttgtkwnddtitpvsdgqdiwrg~t-------htgkwsffngkagdkitlsvqrdaqeaslkgah 164 (336)
T 2vov_A 92 KSYSLAIGKTSYYDPTTGTKWNDDTITPVSDGQDIWRGXT-------HTGKWSFFNGKAGDKITLSVQRDAQEASLKGAH 164 (336)
T ss_dssp EEEEEEEETTTTSCGGGCCEECCTTSSSGGGGSSEECEET-------TTSEEEEEEECTTCEEEEEEEECGGGTTCCCCC
T ss_pred cceeEEeccccccCCCCCccccCCeeeeccCcchhhcccc-------cccceEeecCcCCCEEEEEEeechhhhhhccCC
Confidence 478888888888888543 6677776432 5567777765432
Q ss_pred eeEEEEeccCCCCCCC
Q psy2194 59 ITFHLVHRSQKDPLLV 74 (92)
Q Consensus 59 ~TFqLVHRSQ~DPL~~ 74 (92)
--|-|+-|+.--||+.
T Consensus 165 pgfilfwrpeggplfw 180 (336)
T 2vov_A 165 PGFILFWRPEGGPLFW 180 (336)
T ss_dssp EEEEEEEETTCSCCCC
T ss_pred CceEEEEcCCCCceee
Confidence 2578888888888875
No 9
>1w33_A BbcrAsp-1; complement regulator, complement regulator acquiring surface protein, LYME borreliosis, factor H binding, TICK; 2.7A {Borrelia burgdorferi} PDB: 1w3z_A
Probab=9.80 E-value=67 Score=23.69 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=12.6
Q ss_pred CChHHHHHHhhccccc
Q psy2194 28 PDEQEIYRRLIYPSLI 43 (92)
Q Consensus 28 ~d~~~~y~~~~~~~~i 43 (92)
-+|.-.-||+||+||=
T Consensus 49 ~~ekm~iKRiiYSSLn 64 (181)
T 1w33_A 49 EDIQMKIKRTLYSSLD 64 (181)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3566678999999984
No 10
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A*
Probab=8.60 E-value=1.1e+02 Score=20.05 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=14.7
Q ss_pred cc-cccccceeeeEEe--ecccccCCCCC
Q psy2194 3 LN-QVGIDCTSYLLVE--NKPCRYLPGSP 28 (92)
Q Consensus 3 ~~-~~~~~~~~~~~~~--~~~cry~p~s~ 28 (92)
+. +.|+|-...+.+. +..|.|.+++-
T Consensus 149 ~~~~~G~~~~~l~~~~q~~~~C~~~~~~~ 177 (184)
T 1kxo_A 149 LIGSPVVDSQKLVYSDFSEAACKVNNSNW 177 (184)
T ss_dssp TTSCSSCCGGGCEECCCCC--CC------
T ss_pred HHHhcCCCHHHeEECCCCCCCCCCCCCCC
Confidence 45 7899988888888 55799987653
Done!