Query psy2194
Match_columns 92
No_of_seqs 106 out of 120
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 18:38:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2194.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2194hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fkia1 d.198.3.1 (A:1-118) Hy 28.6 9.3 0.00068 23.3 1.1 26 27-53 53-79 (118)
2 d2oika1 d.13.1.1 (A:6-144) His 13.7 48 0.0035 19.7 2.0 16 59-74 91-106 (139)
3 d1ivza_ d.58.41.1 (A:) SEA dom 13.3 49 0.0035 21.8 2.1 20 19-38 83-104 (132)
4 d1x8qa_ b.60.1.1 (A:) Nitropho 12.4 20 0.0014 22.1 -0.2 23 2-24 152-174 (184)
5 d2a1va1 d.198.3.1 (A:4-134) Hy 11.8 38 0.0028 20.3 1.1 26 27-53 61-88 (131)
6 d1vqqa1 d.17.4.5 (A:27-138) Pe 8.9 53 0.0039 20.0 1.0 16 34-49 97-112 (112)
7 d1vioa1 d.265.1.3 (A:58-231) R 8.7 87 0.0063 19.1 2.0 51 12-84 4-54 (174)
8 d2zgwa2 d.104.1.2 (A:1-188) Bi 8.4 1.4E+02 0.01 19.0 3.0 25 46-70 47-71 (188)
9 d1c6vx_ b.34.7.1 (X:) DNA-bind 8.2 94 0.0068 17.8 1.9 17 58-74 5-21 (55)
10 d1g7oa1 a.45.1.1 (A:76-215) Gl 7.9 44 0.0032 21.7 0.2 29 31-59 19-54 (140)
No 1
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia coli [TaxId: 562]}
Probab=28.57 E-value=9.3 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=18.9
Q ss_pred CCChHHHHHHhhccccc-ccCCCCcccc
Q psy2194 27 SPDEQEIYRRLIYPSLI-ALGKNKKRFI 53 (92)
Q Consensus 27 s~d~~~~y~~~~~~~~i-m~~k~KKkFI 53 (92)
+|++++.++. .||... .++|+|+.|+
T Consensus 53 ~pe~~~~L~~-~~~~i~p~~hm~k~hWv 79 (118)
T d2fkia1 53 SPELAELLRQ-QHSDVRPSRHLNKAHWS 79 (118)
T ss_dssp CHHHHHHHHH-SCSTTCCCCSSCTTTEE
T ss_pred CHHHHHHHHh-hcccccccCccCCCceE
Confidence 4678888876 777743 3558999996
No 2
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Probab=13.73 E-value=48 Score=19.74 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=13.5
Q ss_pred eeEEEEeccCCCCCCC
Q psy2194 59 ITFHLVHRSQKDPLLV 74 (92)
Q Consensus 59 ~TFqLVHRSQ~DPL~~ 74 (92)
.+|+|+-|...|+.+-
T Consensus 91 lH~HviPR~~~d~~~~ 106 (139)
T d2oika1 91 VHWHVIPRFKRDRHFP 106 (139)
T ss_dssp CEEEEEEECTTSSSTT
T ss_pred EEEEEecccCCCCCCC
Confidence 4999999999997653
No 3
>d1ivza_ d.58.41.1 (A:) SEA domain from the hypothetical protein homologous to mucin 16 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.28 E-value=49 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=16.4
Q ss_pred cccccCCCCC--ChHHHHHHhh
Q psy2194 19 KPCRYLPGSP--DEQEIYRRLI 38 (92)
Q Consensus 19 ~~cry~p~s~--d~~~~y~~~~ 38 (92)
--|-|.|.+| |.+.+|..|-
T Consensus 83 ~iCt~~p~~p~Ldre~lY~ELs 104 (132)
T d1ivza_ 83 SLCNFSPLARRVDRVAIYEEFL 104 (132)
T ss_dssp EEEEECTTCCSCCHHHHHHHHH
T ss_pred EEEecCCCCCCccHHHHHHHHH
Confidence 4599999998 8899998763
No 4
>d1x8qa_ b.60.1.1 (A:) Nitrophorin 4 {Rhodnius prolixus [TaxId: 13249]}
Probab=12.42 E-value=20 Score=22.14 Aligned_cols=23 Identities=9% Similarity=0.408 Sum_probs=20.0
Q ss_pred ccccccccceeeeEEeecccccC
Q psy2194 2 YLNQVGIDCTSYLLVENKPCRYL 24 (92)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~cry~ 24 (92)
.|+..|+|-..++...|..|.|.
T Consensus 152 ~l~~~gld~~~f~~~~q~~C~y~ 174 (184)
T d1x8qa_ 152 AVSAATLEFSKFISTKENNCAYD 174 (184)
T ss_dssp HHHHTTCCGGGCEECTTSCCCCC
T ss_pred HHHHcCCCHHHcEEccCCCCCCC
Confidence 36788999999999999999984
No 5
>d2a1va1 d.198.3.1 (A:4-134) Hypothetical protein DR2400 {Deinococcus radiodurans [TaxId: 1299]}
Probab=11.79 E-value=38 Score=20.26 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=17.2
Q ss_pred CCChHHHHHHhhccccc--ccCCCCcccc
Q psy2194 27 SPDEQEIYRRLIYPSLI--ALGKNKKRFI 53 (92)
Q Consensus 27 s~d~~~~y~~~~~~~~i--m~~k~KKkFI 53 (92)
+|++++.++. .||..| .++++|+.|+
T Consensus 61 ~pe~~~~L~~-~~p~~~~~~~h~~k~~Wv 88 (131)
T d2a1va1 61 DPERGEELRQ-AHPQSIAPGYHLNKKHWV 88 (131)
T ss_dssp CHHHHHHHHH-HSTTTEEECTTSCTTTEE
T ss_pred CHHHHHHHHh-hCCCcEecCCccCCCceE
Confidence 5688887755 444332 4578888886
No 6
>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=8.87 E-value=53 Score=19.99 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=11.1
Q ss_pred HHHhhcccccccCCCC
Q psy2194 34 YRRLIYPSLIALGKNK 49 (92)
Q Consensus 34 y~~~~~~~~im~~k~K 49 (92)
|+=---|++|-|+++|
T Consensus 97 Wkv~W~ps~I~P~L~k 112 (112)
T d1vqqa1 97 WKLDWDHSVIIPGMQK 112 (112)
T ss_dssp EEECCCGGGTSTTCCS
T ss_pred EEEEeCccccCcCcCC
Confidence 4444568888888765
No 7
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=8.74 E-value=87 Score=19.13 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=28.5
Q ss_pred eeeEEeecccccCCCCCChHHHHHHhhcccccccCCCCcccccCCCCeeEEEEeccCCCCCCCCCCCCCcEEE
Q psy2194 12 SYLLVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQM 84 (92)
Q Consensus 12 ~~~~~~~~~cry~p~s~d~~~~y~~~~~~~~im~~k~KKkFIDKKnA~TFqLVHRSQ~DPL~~DedAsq~VLv 84 (92)
-| ++.|||--|.-+ +++.+ + ++++ .+++++....+..|||= |-+.|-.+|.
T Consensus 4 ~Y-i~lNKP~G~~~~-~~~~~-~-----~~v~-------~~l~~~~~~~l~~V~RL-------D~~TsGLll~ 54 (174)
T d1vioa1 4 QY-FMLNKPQGCVCS-NDDGD-Y-----PTIY-------QFFDYPLAGKLHSAGRL-------DVDTTGLVLL 54 (174)
T ss_dssp CE-EEEEECTTCBSS-CCC---C-----CBGG-------GGSCTTGGGGCEESSCC-------CTTCEEEEEE
T ss_pred EE-EEEECCCCEEeC-CCCCC-C-----CcHH-------HhCcccccCceEEEecC-------ChhHhceEEE
Confidence 35 467999998754 44432 2 2222 34555555667789983 4555555544
No 8
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.36 E-value=1.4e+02 Score=19.03 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=20.0
Q ss_pred CCCCcccccCCCCeeEEEEeccCCC
Q psy2194 46 GKNKKRFIDKKNAITFHLVHRSQKD 70 (92)
Q Consensus 46 ~k~KKkFIDKKnA~TFqLVHRSQ~D 70 (92)
|+..++|+..++.-.|.++.+....
T Consensus 47 GR~gr~W~sp~g~l~~S~~~~~~~~ 71 (188)
T d2zgwa2 47 GALNRKWESPEGGLWLSIVLSPKVP 71 (188)
T ss_dssp CGGGCBCCCCTTSEEEEEEECCCSC
T ss_pred CCCCCCCcCCccccceEEEeecccc
Confidence 4557899999999999999886544
No 9
>d1c6vx_ b.34.7.1 (X:) DNA-binding domain of retroviral integrase {Simian immunodeficiency virus [TaxId: 11723]}
Probab=8.22 E-value=94 Score=17.79 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.7
Q ss_pred CeeEEEEeccCCCCCCC
Q psy2194 58 AITFHLVHRSQKDPLLV 74 (92)
Q Consensus 58 A~TFqLVHRSQ~DPL~~ 74 (92)
-+.|.+-.|..+||..-
T Consensus 5 ~~nFrVYYR~~~dp~Wk 21 (55)
T d1c6vx_ 5 FKNFRVYYREGRDQLWK 21 (55)
T ss_dssp CCCEEECCCCSSCSCCC
T ss_pred ccceEEEEEcCCCCCcc
Confidence 46899999999999765
No 10
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=44 Score=21.67 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=20.0
Q ss_pred HHHHHHhhcccccccCC-------CCcccccCCCCe
Q psy2194 31 QEIYRRLIYPSLIALGK-------NKKRFIDKKNAI 59 (92)
Q Consensus 31 ~~~y~~~~~~~~im~~k-------~KKkFIDKKnA~ 59 (92)
+..+++|+||.....+- .|+-|++||.+.
T Consensus 19 ~~~~~kL~~PR~~~~~lpEF~T~~A~~~f~~kKe~~ 54 (140)
T d1g7oa1 19 NGYANKLLLPRFAKSAFDEFSTPAARKYFVDKKEAS 54 (140)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCSHHHHHHHHTTTTTT
T ss_pred HHHHHHHhcCcccCCCCcccCCHHHHHHHHHhhhhh
Confidence 45678899997764433 366788888753
Done!