RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2194
         (92 letters)



>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein.  The
          low-temperature viability protein LTV1 is involved in
          ribosome biogenesis 40S subunit production.
          Length = 426

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 21/29 (72%), Positives = 24/29 (82%)

Query: 54 DKKNAITFHLVHRSQKDPLLVDETAPQHV 82
          +KK A +FHLVHRSQ+DPL  DETAPQ V
Sbjct: 1  EKKKAQSFHLVHRSQRDPLAHDETAPQRV 29


>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
           magnesium ion binding  / thiamin pyrophosphate binding.
          Length = 1655

 Score = 26.0 bits (57), Expect = 4.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 12  SYLLVENKPCRYLP 25
           SY+LV+  PCR+ P
Sbjct: 625 SYILVDKHPCRHDP 638


>gnl|CDD|219675 pfam07972, Flavodoxin_NdrI, NrdI Flavodoxin like. 
          Length = 120

 Score = 25.2 bits (56), Expect = 4.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 48 NKKRFIDKKNAITFHLVHRSQKDPLLVDE 76
          N +RF++K       +  R   + L VDE
Sbjct: 9  NTRRFVEKLGLPAQRIPIREIDEELEVDE 37


>gnl|CDD|188990 cd09591, SAM_DLC1, SAM domain of DLC1 subfamily.  SAM (sterile
          alpha motif) domain of DLC1 (Deleted in liver cancer)
          protein is a protein-protein interaction domain located
          at the N-terminus. Proteins of this subfamily do not
          form dimers/oligomers through their SAM domains. They
          participate in regulation of cell migration. SAM domain
          of human DLC1 protein contains the EF1A1 (eukaryotic
          elongation factor) binding motif, thus SAM facilitates
          recruitment of EF1A1 to the membrane periphery and
          suppresses cell migration.
          Length = 60

 Score = 24.6 bits (53), Expect = 4.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 26 GSPDEQEIYRRLIYPSLIALGKNKKRFIDK 55
          G P   ++Y  L++P  I L K +  F+D+
Sbjct: 11 GFPQYAQLYEDLLFPIDIELVKREHDFLDR 40


>gnl|CDD|226955 COG4589, COG4589, Predicted CDP-diglyceride
           synthetase/phosphatidate cytidylyltransferase [General
           function prediction only].
          Length = 303

 Score = 25.1 bits (55), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 33  IYRRLIYPSLIALGKNKKRFIDKKNAITF 61
           +Y  LI P L+ L  +   F+ + +AI +
Sbjct: 118 VYGFLILPILMVLVGDTSGFLHRVSAIQW 146


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0825    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,678,737
Number of extensions: 387026
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 12
Length of query: 92
Length of database: 10,937,602
Length adjustment: 59
Effective length of query: 33
Effective length of database: 8,320,716
Effective search space: 274583628
Effective search space used: 274583628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)