RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2194
         (92 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.2 bits (59), Expect = 0.71
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 14/42 (33%)

Query: 49 KKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALK-TI 89
          +K+ + KK       +  S K  L  D++AP    +A+K T+
Sbjct: 18 EKQAL-KK-------LQASLK--LYADDSAP---ALAIKATM 46


>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
           associated factor, PURA, purine ribonucleotide
           biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
           PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
           1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
           1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
           ...
          Length = 432

 Score = 25.9 bits (58), Expect = 2.1
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 4/32 (12%)

Query: 10  CTSYLLVENKPCRYLPGSPDEQE----IYRRL 37
           C  Y + + +     P + +  E    IY  +
Sbjct: 345 CVGYRMPDGREVDTTPLAAEGWEGIEPIYETM 376


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 2.2
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 8   IDCTSYL-----LVENKPCRYLPGSPDEQEIYRRLIYPSLIALGKNK-KRFIDKKNAITF 61
            DC         ++  +   ++  S D      RL + +L++  +   ++F+++   I +
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINY 91

Query: 62  HL----VHRSQKDPLLVDET 77
                 +   Q+ P ++   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRM 111


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0865    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,363,777
Number of extensions: 67815
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 5
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)