Query psy2196
Match_columns 142
No_of_seqs 105 out of 267
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 18:41:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01147 V_ATP_synt_G vacuola 100.0 6.9E-45 1.5E-49 270.2 15.6 113 1-113 1-113 (113)
2 KOG1772|consensus 100.0 3.2E-42 7E-47 252.9 15.1 108 1-108 1-108 (108)
3 PF03179 V-ATPase_G: Vacuolar 100.0 1.1E-30 2.3E-35 188.7 11.1 105 3-107 1-105 (105)
4 COG2811 NtpF Archaeal/vacuolar 98.1 0.00023 5.1E-09 53.0 13.6 105 2-108 3-107 (108)
5 PRK01005 V-type ATP synthase s 97.7 0.0039 8.5E-08 50.7 15.2 71 10-80 21-91 (207)
6 PRK08404 V-type ATP synthase s 97.6 0.0057 1.2E-07 44.6 13.8 98 7-104 4-101 (103)
7 CHL00019 atpF ATP synthase CF0 96.2 0.21 4.5E-06 39.1 12.6 20 10-29 84-103 (184)
8 TIGR02926 AhaH ATP synthase ar 96.0 0.25 5.4E-06 34.4 10.8 51 9-59 2-52 (85)
9 PRK14471 F0F1 ATP synthase sub 96.0 0.29 6.4E-06 37.4 12.2 32 24-55 60-91 (164)
10 PRK09173 F0F1 ATP synthase sub 95.9 0.35 7.7E-06 36.8 12.3 42 9-50 61-102 (159)
11 PRK14475 F0F1 ATP synthase sub 95.9 0.36 7.8E-06 37.3 12.5 25 32-56 70-94 (167)
12 TIGR01144 ATP_synt_b ATP synth 95.8 0.4 8.8E-06 35.7 12.1 72 31-102 54-129 (147)
13 PF06188 HrpE: HrpE/YscL/FliH 95.6 0.62 1.3E-05 37.2 13.2 85 10-105 24-108 (191)
14 PRK07352 F0F1 ATP synthase sub 95.6 0.55 1.2E-05 36.4 12.5 36 11-46 80-115 (174)
15 PRK01194 V-type ATP synthase s 95.6 0.24 5.2E-06 39.2 10.6 103 13-116 13-127 (185)
16 PRK14472 F0F1 ATP synthase sub 95.4 0.59 1.3E-05 36.2 12.2 18 11-28 79-96 (175)
17 PF01991 vATP-synt_E: ATP synt 95.3 0.95 2E-05 34.7 12.7 47 13-59 5-51 (198)
18 PRK03963 V-type ATP synthase s 95.2 1.2 2.5E-05 34.9 13.6 92 13-106 14-117 (198)
19 PRK13461 F0F1 ATP synthase sub 95.1 1.1 2.3E-05 34.2 12.4 28 30-57 63-90 (159)
20 PRK13453 F0F1 ATP synthase sub 95.1 1 2.2E-05 35.0 12.5 18 10-27 78-95 (173)
21 PF12072 DUF3552: Domain of un 94.8 0.28 6.2E-06 39.2 9.0 56 7-62 25-80 (201)
22 PRK00106 hypothetical protein; 94.8 0.66 1.4E-05 42.8 12.3 52 9-60 35-86 (535)
23 TIGR03825 FliH_bacil flagellar 94.8 1.4 3.1E-05 36.2 13.2 40 11-50 46-88 (255)
24 PRK13455 F0F1 ATP synthase sub 94.7 1.1 2.4E-05 35.0 11.9 25 31-55 86-110 (184)
25 PRK13454 F0F1 ATP synthase sub 94.7 0.61 1.3E-05 36.7 10.4 42 18-59 77-118 (181)
26 PRK01558 V-type ATP synthase s 94.6 1.7 3.8E-05 34.6 12.9 40 13-52 19-58 (198)
27 PRK13460 F0F1 ATP synthase sub 94.4 1.7 3.7E-05 33.7 12.3 32 71-102 119-150 (173)
28 PRK06231 F0F1 ATP synthase sub 94.4 1.5 3.2E-05 35.3 12.3 18 11-28 109-126 (205)
29 PRK02292 V-type ATP synthase s 94.2 1.6 3.5E-05 34.0 11.8 49 13-61 13-61 (188)
30 CHL00118 atpG ATP synthase CF0 93.9 1.2 2.5E-05 34.1 10.3 24 32-55 82-105 (156)
31 PRK13428 F0F1 ATP synthase sub 93.8 1.6 3.5E-05 39.0 12.4 99 9-109 60-160 (445)
32 TIGR03321 alt_F1F0_F0_B altern 93.7 2.4 5.2E-05 34.7 12.4 54 9-62 64-121 (246)
33 PRK14473 F0F1 ATP synthase sub 93.6 2.5 5.4E-05 32.3 12.7 37 22-58 58-94 (164)
34 PRK14474 F0F1 ATP synthase sub 93.6 2.5 5.4E-05 35.0 12.4 103 6-114 61-168 (250)
35 PF00430 ATP-synt_B: ATP synth 93.1 2 4.2E-05 31.0 9.8 37 16-52 54-90 (132)
36 PRK06669 fliH flagellar assemb 92.7 4.7 0.0001 33.4 12.8 41 5-45 77-117 (281)
37 COG0711 AtpF F0F1-type ATP syn 92.7 3.8 8.2E-05 31.7 13.2 50 11-60 56-105 (161)
38 PRK06568 F0F1 ATP synthase sub 92.3 2.6 5.6E-05 33.0 10.1 33 71-103 107-139 (154)
39 PRK07353 F0F1 ATP synthase sub 92.2 3.5 7.6E-05 30.4 10.4 70 30-99 63-136 (140)
40 PRK09174 F0F1 ATP synthase sub 92.2 5.3 0.00012 32.2 13.8 84 18-101 99-186 (204)
41 PRK08476 F0F1 ATP synthase sub 92.0 4.3 9.2E-05 30.7 13.6 56 6-61 41-96 (141)
42 TIGR02926 AhaH ATP synthase ar 92.0 3 6.5E-05 28.9 9.5 51 5-55 9-59 (85)
43 PRK14473 F0F1 ATP synthase sub 91.8 4.7 0.0001 30.8 13.1 41 10-50 68-112 (164)
44 PRK09174 F0F1 ATP synthase sub 91.6 6.2 0.00013 31.9 14.5 65 9-73 112-176 (204)
45 PRK12704 phosphodiesterase; Pr 91.0 9.5 0.00021 35.0 13.8 52 10-61 32-83 (520)
46 PRK09173 F0F1 ATP synthase sub 90.9 5.8 0.00013 30.1 13.3 82 22-103 52-137 (159)
47 PF00430 ATP-synt_B: ATP synth 90.1 5.4 0.00012 28.6 10.2 91 5-106 32-122 (132)
48 TIGR03319 YmdA_YtgF conserved 89.6 14 0.00031 33.8 13.8 52 10-61 26-77 (514)
49 PRK06568 F0F1 ATP synthase sub 89.1 9.2 0.0002 29.9 14.0 31 14-44 68-98 (154)
50 PRK14475 F0F1 ATP synthase sub 88.4 9.8 0.00021 29.3 13.3 42 10-51 70-111 (167)
51 PRK13454 F0F1 ATP synthase sub 88.3 11 0.00023 29.7 13.7 42 11-52 92-133 (181)
52 PRK13453 F0F1 ATP synthase sub 88.0 11 0.00023 29.3 13.4 84 19-102 65-152 (173)
53 PRK08475 F0F1 ATP synthase sub 87.8 11 0.00024 29.2 12.9 30 30-59 80-109 (167)
54 PRK14471 F0F1 ATP synthase sub 87.6 11 0.00023 28.8 13.5 45 10-54 68-112 (164)
55 PRK03963 V-type ATP synthase s 87.3 12 0.00026 29.1 14.1 47 15-61 5-51 (198)
56 PRK02292 V-type ATP synthase s 87.1 12 0.00027 29.0 12.1 90 11-103 22-112 (188)
57 COG0711 AtpF F0F1-type ATP syn 87.1 12 0.00026 28.9 14.1 33 9-41 65-97 (161)
58 PRK00106 hypothetical protein; 86.9 20 0.00043 33.3 13.0 48 10-57 47-94 (535)
59 PRK06569 F0F1 ATP synthase sub 86.5 14 0.00031 29.0 11.9 83 18-107 56-138 (155)
60 PF01991 vATP-synt_E: ATP synt 85.5 12 0.00026 28.6 9.3 73 12-84 15-88 (198)
61 PRK08475 F0F1 ATP synthase sub 85.4 15 0.00033 28.4 11.7 48 12-59 73-120 (167)
62 PRK08404 V-type ATP synthase s 85.4 12 0.00026 27.1 10.7 51 9-59 17-71 (103)
63 CHL00019 atpF ATP synthase CF0 85.4 16 0.00034 28.5 13.4 30 30-59 82-111 (184)
64 PRK01005 V-type ATP synthase s 85.2 19 0.00041 29.3 13.5 39 9-47 31-69 (207)
65 PRK05759 F0F1 ATP synthase sub 84.9 14 0.0003 27.6 14.3 82 16-104 59-140 (156)
66 PRK01558 V-type ATP synthase s 84.4 19 0.00041 28.7 11.6 32 10-41 27-58 (198)
67 PRK09098 type III secretion sy 84.3 22 0.00047 29.3 12.3 39 18-56 41-79 (233)
68 PRK06669 fliH flagellar assemb 84.2 23 0.00049 29.4 13.0 50 10-59 71-120 (281)
69 PRK14472 F0F1 ATP synthase sub 83.1 19 0.00042 27.8 13.3 74 27-100 73-150 (175)
70 PRK08476 F0F1 ATP synthase sub 82.6 18 0.0004 27.2 12.7 82 10-98 56-137 (141)
71 CHL00118 atpG ATP synthase CF0 82.6 19 0.00042 27.4 13.5 77 16-99 77-153 (156)
72 PRK07353 F0F1 ATP synthase sub 82.5 17 0.00037 26.7 13.6 45 10-54 65-113 (140)
73 PRK13461 F0F1 ATP synthase sub 81.9 20 0.00043 27.1 13.2 43 9-51 64-106 (159)
74 PF03179 V-ATPase_G: Vacuolar 80.0 19 0.0004 25.6 8.4 52 12-63 21-72 (105)
75 PRK13460 F0F1 ATP synthase sub 79.7 26 0.00056 27.0 13.1 25 32-56 76-100 (173)
76 PRK07352 F0F1 ATP synthase sub 79.6 26 0.00056 27.0 13.3 43 18-60 65-107 (174)
77 PRK13428 F0F1 ATP synthase sub 79.5 46 0.001 29.8 12.9 49 11-60 41-89 (445)
78 PRK10930 FtsH protease regulat 78.6 31 0.00067 31.0 10.5 51 10-62 264-315 (419)
79 TIGR01144 ATP_synt_b ATP synth 78.6 24 0.00053 26.1 13.5 51 8-58 53-103 (147)
80 TIGR03319 YmdA_YtgF conserved 78.3 47 0.001 30.5 11.8 50 14-63 19-68 (514)
81 PRK13455 F0F1 ATP synthase sub 76.6 34 0.00073 26.6 13.2 38 17-54 83-120 (184)
82 PRK15354 type III secretion sy 76.3 44 0.00096 27.9 11.0 61 11-71 47-107 (224)
83 PRK06569 F0F1 ATP synthase sub 76.3 35 0.00077 26.8 12.0 53 10-62 59-111 (155)
84 PRK06328 type III secretion sy 76.0 41 0.0009 27.4 10.6 31 16-46 29-59 (223)
85 TIGR03825 FliH_bacil flagellar 72.8 51 0.0011 27.0 12.1 52 10-61 34-92 (255)
86 COG1390 NtpE Archaeal/vacuolar 71.5 52 0.0011 26.5 11.1 47 13-59 14-60 (194)
87 TIGR02499 HrpE_YscL_not type I 70.7 41 0.00089 25.0 11.4 27 17-43 14-40 (166)
88 cd03404 Band_7_HflK Band_7_Hfl 70.3 56 0.0012 26.4 10.6 74 6-95 180-253 (266)
89 PRK06231 F0F1 ATP synthase sub 67.9 62 0.0013 26.0 13.3 38 23-60 99-136 (205)
90 TIGR03321 alt_F1F0_F0_B altern 65.7 73 0.0016 26.0 13.3 38 18-55 62-99 (246)
91 KOG0163|consensus 65.7 1.2E+02 0.0025 30.5 11.6 88 6-98 927-1014(1259)
92 COG2811 NtpF Archaeal/vacuolar 65.0 56 0.0012 24.4 11.5 61 9-69 21-81 (108)
93 PRK12705 hypothetical protein; 64.8 1.2E+02 0.0026 28.1 12.9 46 17-62 34-79 (508)
94 PRK05759 F0F1 ATP synthase sub 62.7 61 0.0013 24.1 13.5 31 29-59 61-91 (156)
95 TIGR01933 hflK HflK protein. H 62.3 75 0.0016 25.6 8.6 40 7-46 154-193 (261)
96 PRK06937 type III secretion sy 61.9 78 0.0017 25.0 9.5 22 17-38 31-52 (204)
97 TIGR01933 hflK HflK protein. H 60.5 44 0.00096 27.0 7.0 38 9-46 167-204 (261)
98 cd03404 Band_7_HflK Band_7_Hfl 60.3 90 0.0019 25.2 12.4 54 8-62 193-246 (266)
99 PRK10930 FtsH protease regulat 59.1 30 0.00065 31.0 6.2 37 8-44 251-287 (419)
100 PRK12704 phosphodiesterase; Pr 56.6 1.6E+02 0.0035 27.0 11.0 49 15-63 26-74 (520)
101 PF06188 HrpE: HrpE/YscL/FliH 51.1 1.2E+02 0.0027 24.0 12.3 39 7-45 32-70 (191)
102 COG1390 NtpE Archaeal/vacuolar 49.5 1.4E+02 0.003 24.0 11.4 45 12-56 2-46 (194)
103 TIGR01932 hflC HflC protein. H 49.2 1.1E+02 0.0024 26.0 7.8 71 12-91 230-300 (317)
104 TIGR02499 HrpE_YscL_not type I 49.2 1.1E+02 0.0023 22.7 8.8 22 10-31 18-39 (166)
105 PF14942 Muted: Organelle biog 49.1 1.2E+02 0.0026 23.4 8.0 49 6-56 80-128 (145)
106 cd03407 Band_7_4 A subgroup of 48.6 98 0.0021 25.2 7.2 41 6-46 147-187 (262)
107 PRK09098 type III secretion sy 46.8 1.6E+02 0.0035 24.1 11.4 33 10-42 44-76 (233)
108 PF03938 OmpH: Outer membrane 42.5 1.4E+02 0.003 22.1 8.5 7 40-46 48-54 (158)
109 PRK14474 F0F1 ATP synthase sub 42.2 2E+02 0.0043 23.8 13.4 78 18-102 62-139 (250)
110 PF01468 GA: GA module; Inter 41.2 64 0.0014 20.9 4.1 26 23-48 2-29 (60)
111 PF01988 VIT1: VIT family; In 30.6 1.7E+02 0.0038 23.2 5.9 34 81-115 99-132 (213)
112 PRK06397 V-type ATP synthase s 30.4 2.3E+02 0.0051 21.1 9.2 41 19-59 23-63 (111)
113 PF07328 VirD1: T-DNA border e 29.4 1.2E+02 0.0026 23.8 4.5 62 51-112 33-107 (147)
114 PF09602 PhaP_Bmeg: Polyhydrox 29.1 3E+02 0.0065 22.0 13.8 123 5-128 14-146 (165)
115 PRK01194 V-type ATP synthase s 27.6 3E+02 0.0066 21.6 11.6 94 15-111 4-97 (185)
116 PF05103 DivIVA: DivIVA protei 27.1 21 0.00045 25.7 0.0 35 11-45 69-103 (131)
117 PF12750 Maff2: Maff2 family; 26.5 35 0.00075 23.6 1.0 11 3-13 41-51 (70)
118 PF06295 DUF1043: Protein of u 24.9 2.9E+02 0.0063 20.5 7.1 28 29-56 26-53 (128)
119 cd03405 Band_7_HflC Band_7_Hfl 24.7 1.9E+02 0.0041 22.8 5.1 35 16-52 179-213 (242)
120 PRK11677 hypothetical protein; 23.2 3.5E+02 0.0075 20.7 7.2 29 28-56 29-57 (134)
121 PRK15322 invasion protein OrgB 22.8 4.5E+02 0.0097 21.9 11.2 31 12-42 8-38 (210)
122 PRK10428 hypothetical protein; 20.8 2.7E+02 0.0059 18.8 4.6 36 11-50 29-64 (69)
123 PF08655 DASH_Ask1: DASH compl 20.2 1.7E+02 0.0038 19.9 3.5 33 71-103 2-34 (66)
No 1
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=100.00 E-value=6.9e-45 Score=270.23 Aligned_cols=113 Identities=64% Similarity=0.896 Sum_probs=112.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy2196 1 MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLK 80 (142)
Q Consensus 1 Masqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~k 80 (142)
|+|||+|||+||.||++|+.||+.||++|++||||||+||++||+.||.++|.+|++|+++++|+++.+..+++++|+.+
T Consensus 1 M~sq~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~k 80 (113)
T TIGR01147 1 MASQTQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAK 80 (113)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccccccchh
Q psy2196 81 IDEMNKAVENNKENVIRKVLDLVYDIKPELHKN 113 (142)
Q Consensus 81 I~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N 113 (142)
|+.|+.+|++|++.||++||++||+|+|+||+|
T Consensus 81 i~~ik~~~~~~~~~Vv~~Ll~~V~~v~pe~h~n 113 (113)
T TIGR01147 81 IREIKKAVQKNKDAVIKDLLHLVCDISPELHIN 113 (113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999998
No 2
>KOG1772|consensus
Probab=100.00 E-value=3.2e-42 Score=252.90 Aligned_cols=108 Identities=54% Similarity=0.767 Sum_probs=107.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy2196 1 MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLK 80 (142)
Q Consensus 1 Masqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~k 80 (142)
|+|||+||||||+||++|.+||++||++|.+||||||+||+.||+.||.++|.+|+.|++.++|+.+.++.+++.+|+.+
T Consensus 1 M~Sq~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~k 80 (108)
T KOG1772|consen 1 MASQSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDK 80 (108)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhccccc
Q psy2196 81 IDEMNKAVENNKENVIRKVLDLVYDIKP 108 (142)
Q Consensus 81 I~~i~~~~~~nk~~Vv~~Ll~~V~dVkp 108 (142)
|..|++++++|++.||++||.+||||+|
T Consensus 81 i~~lk~~~~k~~~~Vv~~LL~~V~~v~~ 108 (108)
T KOG1772|consen 81 IAGLKTSAQKNSDDVVDMLLKYVCDVKP 108 (108)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999998
No 3
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=99.97 E-value=1.1e-30 Score=188.74 Aligned_cols=105 Identities=48% Similarity=0.682 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q psy2196 3 SQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKID 82 (142)
Q Consensus 3 sqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~ 82 (142)
|||+|||+||.||++|.+||.+||++|.+||++|+.+|+.||+.||.++|.+|+.+...++|+.+.....|..+|..+|.
T Consensus 1 ~~~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~ 80 (105)
T PF03179_consen 1 SQSDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIE 80 (105)
T ss_dssp -----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccc
Q psy2196 83 EMNKAVENNKENVIRKVLDLVYDIK 107 (142)
Q Consensus 83 ~i~~~~~~nk~~Vv~~Ll~~V~dVk 107 (142)
.|+.+|++|++.||++||+.||||+
T Consensus 81 ~i~~~~~~~~~~vv~~ll~~V~~Vk 105 (105)
T PF03179_consen 81 EIKKSASKNKDKVVDMLLSRVCDVK 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999996
No 4
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=98.09 E-value=0.00023 Score=52.97 Aligned_cols=105 Identities=23% Similarity=0.295 Sum_probs=90.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q psy2196 2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKI 81 (142)
Q Consensus 2 asqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI 81 (142)
-..+.-|-.+-.||..|.+.|.+|+..+.+++++|+.+|...|+.+-..-+..++++....---......++-.++..++
T Consensus 3 m~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~ 82 (108)
T COG2811 3 MDDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEA 82 (108)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788899999999999999999999999999999999999999999999998887776666677778888888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccccc
Q psy2196 82 DEMNKAVENNKENVIRKVLDLVYDIKP 108 (142)
Q Consensus 82 ~~i~~~~~~nk~~Vv~~Ll~~V~dVkp 108 (142)
..|... -|.++|+.++++-++.+-|
T Consensus 83 ~~~~~k--a~~~k~~~~a~~~~~~~l~ 107 (108)
T COG2811 83 SAILSK--AAEGKVVEAALSEFLAILE 107 (108)
T ss_pred HHHHHH--hHhhHHHHHHHHHHHHHhc
Confidence 888776 6888999999888776543
No 5
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.67 E-value=0.0039 Score=50.66 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLK 80 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~k 80 (142)
.|-.|+.+|..||++|++...+-+.+|+.+|+.-++.++.+-+.+.+...+............+..++...
T Consensus 21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~ 91 (207)
T PRK01005 21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENK 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35579999999999999999999999999999999999999999999888877666666666666665554
No 6
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=97.60 E-value=0.0057 Score=44.60 Aligned_cols=98 Identities=26% Similarity=0.348 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q psy2196 7 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNK 86 (142)
Q Consensus 7 GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~ 86 (142)
-|...-.||.++..++..|+......|.+|+.+|..+.+.-..+-..+...........-......+-.+...+|..|..
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~ 83 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKV 83 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888888888888888888888888888887777777777666665555555566677778889999999
Q ss_pred HHHhhHHHHHHHHHHhhc
Q psy2196 87 AVENNKENVIRKVLDLVY 104 (142)
Q Consensus 87 ~~~~nk~~Vv~~Ll~~V~ 104 (142)
....+.+.+|++++..+.
T Consensus 84 ~a~~k~~~av~~~~~~~~ 101 (103)
T PRK08404 84 KAEENFETAVSEAIKLIR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999988764
No 7
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=96.19 E-value=0.21 Score=39.14 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRK 29 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K 29 (142)
+|-.|..+|.+|+..|+..-
T Consensus 84 ~L~~A~~ea~~ii~~A~~~a 103 (184)
T CHL00019 84 RLRQAELEADEIRVNGYSEI 103 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555666655555543
No 8
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=95.98 E-value=0.25 Score=34.38 Aligned_cols=51 Identities=31% Similarity=0.438 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
-+|=.||.++..+|..|+......|.+|+.+|...++.-...-+.+-....
T Consensus 2 ~~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii 52 (85)
T TIGR02926 2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEII 52 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888888888888888888887776666655444
No 9
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=95.98 E-value=0.29 Score=37.43 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 24 EAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 55 (142)
Q Consensus 24 eARk~K~krLKqAK~EA~~EIe~yr~~kE~eF 55 (142)
+....-..+|.+|+.+|..-|+..+.+.+...
T Consensus 60 ~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~ 91 (164)
T PRK14471 60 NLQADNERLLKEARAERDAILKEAREIKEKMI 91 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443
No 10
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=95.90 E-value=0.35 Score=36.81 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE 50 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~ 50 (142)
.+|-.|..+|+.|+..|+..-...+.+|+.+|..+++.....
T Consensus 61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~ 102 (159)
T PRK09173 61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKL 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666665555555555555555555554443
No 11
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=95.88 E-value=0.36 Score=37.30 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 32 RLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 32 rLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
+|.+|+.+|..-|+..+.+.+....
T Consensus 70 ~L~~A~~ea~~Ii~~A~~~a~~~~~ 94 (167)
T PRK14475 70 EREEAERQAAAMLAAAKADARRMEA 94 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 12
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=95.81 E-value=0.4 Score=35.75 Aligned_cols=72 Identities=28% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2196 31 RRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGS----RDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDL 102 (142)
Q Consensus 31 krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs----~~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~ 102 (142)
.+|.+|+.+|..-++..+.+-+........+.... -......++.+...-+..++.....-.-.++..||..
T Consensus 54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~ 129 (147)
T TIGR01144 54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIER 129 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333222111 1122233444444444444444444444444444443
No 13
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=95.64 E-value=0.62 Score=37.17 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVE 89 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~ 89 (142)
..|.+..+|.+|++.||..-.+-|.+|+++|+.-++.-+.+-.+.|......... ....+.+.|.....
T Consensus 24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~-----------~~~~~~e~l~~~l~ 92 (191)
T PF06188_consen 24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQ-----------EWQQQREQLLQQLE 92 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999997777777777653333222 23333344444444
Q ss_pred hhHHHHHHHHHHhhcc
Q psy2196 90 NNKENVIRKVLDLVYD 105 (142)
Q Consensus 90 ~nk~~Vv~~Ll~~V~d 105 (142)
..-+.|+...|..+++
T Consensus 93 ~~~~~ll~~al~~lL~ 108 (191)
T PF06188_consen 93 EQAEELLSQALERLLD 108 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 14
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=95.60 E-value=0.55 Score=36.40 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 46 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~ 46 (142)
|-.|.++|++|+.+|+..-.+.......+|..|++.
T Consensus 80 L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~ 115 (174)
T PRK07352 80 LAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMAR 115 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333333333
No 15
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=95.57 E-value=0.24 Score=39.24 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------CChhHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFM------------GSRDDVAAKIESDTKLK 80 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~------------Gs~~~~~~~le~eT~~k 80 (142)
.|+.+|..|+.+|++.-..-++.|+.+|+...+.|-..-+.+-........ +.....-.++=..+..+
T Consensus 13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~ 92 (185)
T PRK01194 13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH 92 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999988887776665544432 23344444555556666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccccccchhhhh
Q psy2196 81 IDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRA 116 (142)
Q Consensus 81 I~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N~~~ 116 (142)
|..|-..- ..++-+.++|+..++...|++-.-++.
T Consensus 93 L~~l~~~~-~Y~~~L~~LI~~a~~~l~~~~~v~~~~ 127 (185)
T PRK01194 93 LMNITKSK-EYDSILNKMIEVAIKTLGEDCIIKVSE 127 (185)
T ss_pred HHcccCCc-hHHHHHHHHHHHHHHhcCCCeEEEEcH
Confidence 66665322 666667777777666655655444443
No 16
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=95.44 E-value=0.59 Score=36.24 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKR 28 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~ 28 (142)
|-.|+.+|++|+..|+..
T Consensus 79 L~~a~~ea~~ii~~A~~~ 96 (175)
T PRK14472 79 LAKADAEADKIIREGKEY 96 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 17
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=95.25 E-value=0.95 Score=34.70 Aligned_cols=47 Identities=32% Similarity=0.444 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
+|+.+|.+|+++|+..-.+-+.+++.+|..+++.+....+.+.....
T Consensus 5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
T PF01991_consen 5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEK 51 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999998887777777665443
No 18
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=95.18 E-value=1.2 Score=34.88 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------hcCChhHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR----EYEAK--------FMGSRDDVAAKIESDTKLK 80 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk----~~ea~--------~~Gs~~~~~~~le~eT~~k 80 (142)
.|..+|..|+++|+..-.+.+.+|+.+|+.+.+.+...-+.+-. ...+. .+.-......++=.++..+
T Consensus 14 ~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~ 93 (198)
T PRK03963 14 EAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRER 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998888888888888766655443332222 11111 1233345555666667777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhccc
Q psy2196 81 IDEMNKAVENNKENVIRKVLDLVYDI 106 (142)
Q Consensus 81 I~~i~~~~~~nk~~Vv~~Ll~~V~dV 106 (142)
|..+... .+++-+.++|...+..+
T Consensus 94 l~~~~~~--~Y~~~l~~li~~a~~~l 117 (198)
T PRK03963 94 LAELPED--EYFETLKALTKEAVEEL 117 (198)
T ss_pred HHhhhhh--hHHHHHHHHHHHHHHHh
Confidence 7776654 66666666666665554
No 19
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=95.06 E-value=1.1 Score=34.16 Aligned_cols=28 Identities=39% Similarity=0.726 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 30 ARRLKQAKEEAQEDIEKYRQEREKIFRE 57 (142)
Q Consensus 30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~ 57 (142)
...|.+|+.+|..=|+..+.+-+.....
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~ 90 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEE 90 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 20
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=95.05 E-value=1 Score=35.03 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKK 27 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk 27 (142)
+|-.|+.+|+.|+.+|+.
T Consensus 78 ~l~~a~~ea~~ii~~a~~ 95 (173)
T PRK13453 78 KLKETQEEVQKILEDAKV 95 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 21
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.82 E-value=0.28 Score=39.15 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196 7 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF 62 (142)
Q Consensus 7 GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~ 62 (142)
+=..|..|+..|..|+..|+..=....+++..+|..|+..+|.+-|.+|+....+.
T Consensus 25 ~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 25 NRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999998889999999999999999999999999777664
No 22
>PRK00106 hypothetical protein; Provisional
Probab=94.77 E-value=0.66 Score=42.80 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea 60 (142)
-+||.|++.|.+|+.+|+..-..-+++|..+|+.++..++.+-++++.....
T Consensus 35 ~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ 86 (535)
T PRK00106 35 LTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYRE 86 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999988888887655555666666655555555555555444433
No 23
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=94.75 E-value=1.4 Score=36.24 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQA---KEEAQEDIEKYRQE 50 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqA---K~EA~~EIe~yr~~ 50 (142)
|=.|..+|+.||.+|+..-...+.++ ..+|..|.+..+..
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~ 88 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQE 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888887766555444 34444444444433
No 24
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=94.68 E-value=1.1 Score=34.99 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 31 RRLKQAKEEAQEDIEKYRQEREKIF 55 (142)
Q Consensus 31 krLKqAK~EA~~EIe~yr~~kE~eF 55 (142)
.+|.+|+.+|..=|+..+.+-+...
T Consensus 86 ~~L~~A~~ea~~Ii~~A~~~a~~~~ 110 (184)
T PRK13455 86 RKQREVQEQADRIVAAAKDEAQAAA 110 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555444444433
No 25
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=94.67 E-value=0.61 Score=36.71 Aligned_cols=42 Identities=26% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
...-.......-..+|.+||.||..-|+..+.+-+++.....
T Consensus 77 ~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~ 118 (181)
T PRK13454 77 LKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAI 118 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555556666666666555555555544333
No 26
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=94.57 E-value=1.7 Score=34.59 Aligned_cols=40 Identities=35% Similarity=0.362 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 52 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE 52 (142)
+|+.+|..|+++|++.-..-+.+|+.+|+.-++..+.+-+
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999988887655555
No 27
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=94.44 E-value=1.7 Score=33.65 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2196 71 AKIESDTKLKIDEMNKAVENNKENVIRKVLDL 102 (142)
Q Consensus 71 ~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~ 102 (142)
.+++.+...-+..++..+..-.-.+...+|..
T Consensus 119 ~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~ 150 (173)
T PRK13460 119 KEIELAKGKALSQLQNQIVEMTITIASKVLEK 150 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 28
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=94.43 E-value=1.5 Score=35.34 Aligned_cols=18 Identities=22% Similarity=0.099 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKR 28 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~ 28 (142)
|-.|..+|.+|+..|+..
T Consensus 109 L~~A~~eA~~Ii~~A~~e 126 (205)
T PRK06231 109 HENALAQAKEIIDQANYE 126 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 29
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=94.22 E-value=1.6 Score=33.96 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 61 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~ 61 (142)
+|+.+|.+|.++|++.-..-+.+|+.+|+...+.+...-+.+.......
T Consensus 13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r 61 (188)
T PRK02292 13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999999999999999888888888887766543
No 30
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=93.94 E-value=1.2 Score=34.12 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 32 RLKQAKEEAQEDIEKYRQEREKIF 55 (142)
Q Consensus 32 rLKqAK~EA~~EIe~yr~~kE~eF 55 (142)
+|.+|+.+|..-++.-+.+-+...
T Consensus 82 ~L~~A~~ea~~ii~~A~~~a~~~~ 105 (156)
T CHL00118 82 ELSKARKEAQLEITQSQKEAKEIV 105 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 31
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=93.83 E-value=1.6 Score=39.01 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAV 88 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~ 88 (142)
..|-.|..+|++|+.+|+..-.+...++..+|..|++....+-..+...........-......+--+.-. +.|....
T Consensus 60 ~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~--kil~~~l 137 (445)
T PRK13428 60 KAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAG--ELVRNHV 137 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHc
Confidence 44777778888888888777655555555555555555554444444433322221111111111111111 2233333
Q ss_pred --HhhHHHHHHHHHHhhcccccc
Q psy2196 89 --ENNKENVIRKVLDLVYDIKPE 109 (142)
Q Consensus 89 --~~nk~~Vv~~Ll~~V~dVkpe 109 (142)
....+.+|+..|+.+-...|.
T Consensus 138 ~d~~~~~~lId~~i~~l~~~~~~ 160 (445)
T PRK13428 138 ADPAQQSATVDRFLDELDAMAPS 160 (445)
T ss_pred CCHHHHHHHHHHHHHHhhccCCC
Confidence 244568888888888776663
No 32
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=93.67 E-value=2.4 Score=34.67 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196 9 QQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF 62 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~----K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~ 62 (142)
++|-.|+.+|..|+.+|+.. +...+.+|+.+|.+.++..+..-+.+......+.
T Consensus 64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l 121 (246)
T TIGR03321 64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDEL 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999966664 6677888888888888877777777766555443
No 33
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=93.65 E-value=2.5 Score=32.30 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 22 VAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 58 (142)
Q Consensus 22 V~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ 58 (142)
.......-..+|.+|+.+|..-|+..+.+-+..+...
T Consensus 58 a~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~ 94 (164)
T PRK14473 58 LANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEI 94 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555555555555555554444433
No 34
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=93.60 E-value=2.5 Score=35.04 Aligned_cols=103 Identities=12% Similarity=0.180 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q psy2196 6 QGIQQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKI 81 (142)
Q Consensus 6 ~GIQqLL~AEkeA~~iV~eARk~----K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI 81 (142)
..-++|-.|++++..|+..|+.. +..-+.+|+.+|...++..+..-+.+-............+..-.+- ..-|
T Consensus 61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A---~kiL 137 (250)
T PRK14474 61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKII---RAAL 137 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34567888999999999988875 5666788888888888887777777777666655444443333222 2222
Q ss_pred HHHHHHHH-hhHHHHHHHHHHhhcccccccchhh
Q psy2196 82 DEMNKAVE-NNKENVIRKVLDLVYDIKPELHKNF 114 (142)
Q Consensus 82 ~~i~~~~~-~nk~~Vv~~Ll~~V~dVkpevh~N~ 114 (142)
. ...+ .....+|+.+++.+....|+-..++
T Consensus 138 ~---~~~d~~~~~~lid~~i~~l~~l~~~~r~~l 168 (250)
T PRK14474 138 A---DLANATLEQQIVGIFIARLEHLSEAERQAL 168 (250)
T ss_pred H---hhcCHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 2 2112 2234788888888877766644444
No 35
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=93.07 E-value=2 Score=30.95 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 52 (142)
Q Consensus 16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE 52 (142)
.++..++.+||.....-+.+|+.+|..+++....+-+
T Consensus 54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~ 90 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAE 90 (132)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 36
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=92.66 E-value=4.7 Score=33.44 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 5 TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIE 45 (142)
Q Consensus 5 s~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe 45 (142)
..-+..|++|..+|..|+.+||..-.+.+.+|+.+++...+
T Consensus 77 ~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~ 117 (281)
T PRK06669 77 EEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIE 117 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777666666666655555443
No 37
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=92.65 E-value=3.8 Score=31.67 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea 60 (142)
+..+-.++...+.+||.....-+.+|+.+|..+++.++.+-+.++.....
T Consensus 56 a~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~ 105 (161)
T COG0711 56 AQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKE 105 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777777778888888888888777777765543
No 38
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=92.27 E-value=2.6 Score=32.95 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2196 71 AKIESDTKLKIDEMNKAVENNKENVIRKVLDLV 103 (142)
Q Consensus 71 ~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~V 103 (142)
.+++.+...-+.++++.+..-.=.+.......|
T Consensus 107 ~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~~~ 139 (154)
T PRK06568 107 QLIQNQKSTASKELQDEFCDEVIKLVSEYFQSV 139 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555444444444444433
No 39
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=92.17 E-value=3.5 Score=30.40 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2196 30 ARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSR----DDVAAKIESDTKLKIDEMNKAVENNKENVIRKV 99 (142)
Q Consensus 30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~----~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~~L 99 (142)
..+|.+|+.+|..-++..+.+-+.+.....+.....- ......++.+...-+..+++.+..-...++..|
T Consensus 63 e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kl 136 (140)
T PRK07353 63 EQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKL 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555555554443333221111 122334444555555555544444444444333
No 40
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=92.16 E-value=5.3 Score=32.23 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy2196 18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF----MGSRDDVAAKIESDTKLKIDEMNKAVENNKE 93 (142)
Q Consensus 18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~----~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~ 93 (142)
...-.......-.+.|.+||.+|..-|+..|.+-+.+......+. ..--.....++..+-..-+..+......--.
T Consensus 99 ~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~ 178 (204)
T PRK09174 99 LKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAA 178 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555544444333222221 1112334445555555555555555555555
Q ss_pred HHHHHHHH
Q psy2196 94 NVIRKVLD 101 (142)
Q Consensus 94 ~Vv~~Ll~ 101 (142)
.++..||.
T Consensus 179 ~I~~Kllg 186 (204)
T PRK09174 179 AIVEQLIG 186 (204)
T ss_pred HHHHHHhC
Confidence 55555543
No 41
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=91.96 E-value=4.3 Score=30.68 Aligned_cols=56 Identities=21% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 6 QGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 61 (142)
Q Consensus 6 ~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~ 61 (142)
+.|..-|..=.++..-+...+......|.+|+.+|...++..+.+-..+.......
T Consensus 41 ~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~ 96 (141)
T PRK08476 41 ASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEA 96 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555545566666677777777788888888888877777766666544433
No 42
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=91.96 E-value=3 Score=28.88 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 5 TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 55 (142)
Q Consensus 5 s~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eF 55 (142)
+..-..|-.|..+|..||..|+.....-..++..+|..|.......-..+.
T Consensus 9 ~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei 59 (85)
T TIGR02926 9 EDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEI 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888999999999999988877777777777666665544444443
No 43
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=91.76 E-value=4.7 Score=30.75 Aligned_cols=41 Identities=37% Similarity=0.440 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQE 50 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~----K~krLKqAK~EA~~EIe~yr~~ 50 (142)
.|-.|..+|..|+..|+.. +...+.+|+.+|...++..+.+
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14473 68 ELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQ 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543 2333444444444444433333
No 44
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=91.60 E-value=6.2 Score=31.85 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKI 73 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~l 73 (142)
+.|-.|..+|+.|+..||..-.......+.+|..|++....+-+.+........++.-.....++
T Consensus 112 ~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~ 176 (204)
T PRK09174 112 QELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEET 176 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888887666666666666666666666666666655555554444444333
No 45
>PRK12704 phosphodiesterase; Provisional
Probab=90.97 E-value=9.5 Score=34.96 Aligned_cols=52 Identities=38% Similarity=0.403 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 61 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~ 61 (142)
.+-.|+.+|..|+.+|+..-....++++.+|+.|+..+|.+-+.+|+..+..
T Consensus 32 ~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~ 83 (520)
T PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE 83 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457999999999999887667789999999999999999998887554443
No 46
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=90.85 E-value=5.8 Score=30.10 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2196 22 VAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSR----DDVAAKIESDTKLKIDEMNKAVENNKENVIR 97 (142)
Q Consensus 22 V~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~----~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~ 97 (142)
.......-..+|.+|+.+|..-|+..+.+.+.....-.....-.. .....+++.+...-+..+++....---.++.
T Consensus 52 A~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~ 131 (159)
T PRK09173 52 AQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAE 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444556677777776666666666655443332222211 2234456666666666666665555555555
Q ss_pred HHHHhh
Q psy2196 98 KVLDLV 103 (142)
Q Consensus 98 ~Ll~~V 103 (142)
.+|..-
T Consensus 132 kil~~~ 137 (159)
T PRK09173 132 KLLAEK 137 (159)
T ss_pred HHHHhh
Confidence 555443
No 47
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=90.10 E-value=5.4 Score=28.60 Aligned_cols=91 Identities=26% Similarity=0.327 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q psy2196 5 TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEM 84 (142)
Q Consensus 5 s~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i 84 (142)
++.|+..+.-=.....-+......-..+|.+|+.+|..-++..+.+-+........+ .+.+....+..-
T Consensus 32 ~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e-----------a~~~~~~~~~~a 100 (132)
T PF00430_consen 32 KAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE-----------AEKEAERIIEQA 100 (132)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 345554443333344445555566677899999999999999888888888765433 334444444445
Q ss_pred HHHHHhhHHHHHHHHHHhhccc
Q psy2196 85 NKAVENNKENVIRKVLDLVYDI 106 (142)
Q Consensus 85 ~~~~~~nk~~Vv~~Ll~~V~dV 106 (142)
......-++.++..|-..|+++
T Consensus 101 ~~~i~~e~~~a~~~l~~~~~~l 122 (132)
T PF00430_consen 101 EAEIEQEKEKAKKELRQEIVDL 122 (132)
T ss_dssp HHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 48
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.62 E-value=14 Score=33.78 Aligned_cols=52 Identities=35% Similarity=0.378 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 61 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~ 61 (142)
.|-.|+.+|..|+.+|...=....++++.+|+.|+..+|.+-+.+|+..+..
T Consensus 26 ~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r 77 (514)
T TIGR03319 26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE 77 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888888776666778888889899999998888887555443
No 49
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=89.10 E-value=9.2 Score=29.85 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 14 AEKRAAEKVAEAKKRKARRLKQAKEEAQEDI 44 (142)
Q Consensus 14 AEkeA~~iV~eARk~K~krLKqAK~EA~~EI 44 (142)
|+.+|+.|+.+|+....+-..+++++|..|+
T Consensus 68 Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea 98 (154)
T PRK06568 68 LETLRSQMIEESNEVTKKIIQEKTKEIEEFL 98 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 50
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=88.45 E-value=9.8 Score=29.30 Aligned_cols=42 Identities=31% Similarity=0.318 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 51 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~k 51 (142)
+|-.|..+|++|+..|+..-.+...++...|..|.+.....-
T Consensus 70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A 111 (167)
T PRK14475 70 EREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMA 111 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444444444444444433
No 51
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=88.35 E-value=11 Score=29.65 Aligned_cols=42 Identities=29% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 52 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE 52 (142)
|-.|..+|..|+..|+..-.+...+...+|+.|++....+-+
T Consensus 92 L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~ 133 (181)
T PRK13454 92 LADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESE 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544444444444444444444444333
No 52
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=88.03 E-value=11 Score=29.29 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy2196 19 AEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMG----SRDDVAAKIESDTKLKIDEMNKAVENNKEN 94 (142)
Q Consensus 19 ~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~G----s~~~~~~~le~eT~~kI~~i~~~~~~nk~~ 94 (142)
..-....+..-.++|.+|+.+|..-++..+.+-+........+..- .......+++.+...-+..++..+..---.
T Consensus 65 ~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~ 144 (173)
T PRK13453 65 KLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVL 144 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455577777777777777666666665544433221 122334455555555555555555555555
Q ss_pred HHHHHHHh
Q psy2196 95 VIRKVLDL 102 (142)
Q Consensus 95 Vv~~Ll~~ 102 (142)
++..+|..
T Consensus 145 ~a~kll~~ 152 (173)
T PRK13453 145 IASKVLRK 152 (173)
T ss_pred HHHHHHHh
Confidence 55555443
No 53
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=87.79 E-value=11 Score=29.19 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 30 ARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
...|.+|+.+|..-|+..+.+-+.......
T Consensus 80 e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii 109 (167)
T PRK08475 80 LKKLEEAKEKAELIVETAKKEAYILTQKIE 109 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555544433
No 54
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=87.62 E-value=11 Score=28.78 Aligned_cols=45 Identities=27% Similarity=0.267 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI 54 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~e 54 (142)
.|-.|..+|+.|+..|+........++..+|..|++....+-..+
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14471 68 LLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKAS 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777776655555444444444444444433333
No 55
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=87.32 E-value=12 Score=29.11 Aligned_cols=47 Identities=26% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 15 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 61 (142)
Q Consensus 15 EkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~ 61 (142)
+.-..+|..+|+....+.|.+|+.+|+..++....+-+.+.......
T Consensus 5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~ 51 (198)
T PRK03963 5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRK 51 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999888888776655543
No 56
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=87.11 E-value=12 Score=28.96 Aligned_cols=90 Identities=21% Similarity=0.346 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR-EYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVE 89 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk-~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~ 89 (142)
|=+|++++..|+++|++.=.+-..++..+|.+|...+.......-. ......+.-......++=..+..+|..+-..
T Consensus 22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~-- 99 (188)
T PRK02292 22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD-- 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--
Confidence 4478999999999999987777788888888888887665444433 2223456667777788888888888877654
Q ss_pred hhHHHHHHHHHHhh
Q psy2196 90 NNKENVIRKVLDLV 103 (142)
Q Consensus 90 ~nk~~Vv~~Ll~~V 103 (142)
.. ..++..||...
T Consensus 100 ~y-~~~l~~li~~~ 112 (188)
T PRK02292 100 KR-EELTKSLLDAA 112 (188)
T ss_pred hH-HHHHHHHHHhc
Confidence 22 34555555444
No 57
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=87.07 E-value=12 Score=28.86 Aligned_cols=33 Identities=33% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ 41 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~ 41 (142)
+.|-+|..+|+.||+.|+..-..-...++.+|+
T Consensus 65 ~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~ 97 (161)
T COG0711 65 QELEEAREQASEIIEQAKKEAEQIAEEIKAEAE 97 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543333333333333
No 58
>PRK00106 hypothetical protein; Provisional
Probab=86.91 E-value=20 Score=33.27 Aligned_cols=48 Identities=31% Similarity=0.313 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 57 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~ 57 (142)
-+-.|+.+|..|+.+|...--...++++.+|+.|+..+|.+-+.+|+.
T Consensus 47 IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~e 94 (535)
T PRK00106 47 LRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKS 94 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999988776778999999999999999999888743
No 59
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=86.47 E-value=14 Score=29.01 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2196 18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIR 97 (142)
Q Consensus 18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~ 97 (142)
+..-...++..-...|..|+.+|..=..+-|..-..++-. .......+|..--...|+.|.....+-+....+
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~-------~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~ 128 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLI-------KKKNLEQDLKNSINQNIEDINLAAKQFRTNKSE 128 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444444555555555555555554433333333333321 122233334444455566666666666666666
Q ss_pred HHHHhhcccc
Q psy2196 98 KVLDLVYDIK 107 (142)
Q Consensus 98 ~Ll~~V~dVk 107 (142)
-|+++.|+|=
T Consensus 129 ~~i~~~~~i~ 138 (155)
T PRK06569 129 AIIKLAVNII 138 (155)
T ss_pred HHHHHHHHHH
Confidence 7777766664
No 60
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=85.53 E-value=12 Score=28.59 Aligned_cols=73 Identities=12% Similarity=0.256 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCChhHHHHHHHHHHHHHHHHH
Q psy2196 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE-AKFMGSRDDVAAKIESDTKLKIDEM 84 (142)
Q Consensus 12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e-a~~~Gs~~~~~~~le~eT~~kI~~i 84 (142)
-+|+.++..|+.++...-..++......+.++++..+........... ...+.-......++-.++...|..+
T Consensus 15 ~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~ 88 (198)
T PF01991_consen 15 AEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEVKEKLKSF 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666655555555555555555555444433332111 1222333344444444444444443
No 61
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=85.43 E-value=15 Score=28.43 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
-....++..++.+||......+.+|+.+|+.+.+..-.+-..+.....
T Consensus 73 ~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~ 120 (167)
T PRK08475 73 KEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI 120 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888888888888888887776666666655444
No 62
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=85.42 E-value=12 Score=27.15 Aligned_cols=51 Identities=29% Similarity=0.354 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRK----ARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K----~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
+.|-.|..+|..||..|+..- ..-+.+|+.+|..-++..+.+-+.+-..-.
T Consensus 17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~ 71 (103)
T PRK08404 17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKIL 71 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777653 444666666666666666665555554433
No 63
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=85.39 E-value=16 Score=28.54 Aligned_cols=30 Identities=30% Similarity=0.129 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 30 ARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
..+|.+|+.+|..-|+..+.+-+.+.....
T Consensus 82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il 111 (184)
T CHL00019 82 RARLRQAELEADEIRVNGYSEIEREKENLI 111 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555544443
No 64
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=85.17 E-value=19 Score=29.29 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKY 47 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~y 47 (142)
.-|-.|.++|..||.+|+....+.+.+|+.+++.|....
T Consensus 31 ~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~ 69 (207)
T PRK01005 31 AIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQG 69 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777766643
No 65
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=84.90 E-value=14 Score=27.58 Aligned_cols=82 Identities=27% Similarity=0.284 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2196 16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENV 95 (142)
Q Consensus 16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~V 95 (142)
.++..++.+|+......+.+|+.+|..+.+....+-+.+-..... .....+..+...-+..++..+..--..+
T Consensus 59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~~~~lA~~~ 131 (156)
T PRK05759 59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA-------QAQAEIEQERKRAREELRKQVADLAVAG 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666665555544332 2344566666777777777666666666
Q ss_pred HHHHHHhhc
Q psy2196 96 IRKVLDLVY 104 (142)
Q Consensus 96 v~~Ll~~V~ 104 (142)
+..+|..-+
T Consensus 132 a~k~l~~~~ 140 (156)
T PRK05759 132 AEKILGREL 140 (156)
T ss_pred HHHHHHhHc
Confidence 666666543
No 66
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=84.36 E-value=19 Score=28.65 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ 41 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~ 41 (142)
-|-+|+++|.+||.+|++.-..-++.|+.+|.
T Consensus 27 Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 27 IILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678899999999998886666666554444
No 67
>PRK09098 type III secretion system protein HrpB; Validated
Probab=84.33 E-value=22 Score=29.29 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
..+++++||+.=.+-|-+|+.+|+.=++..+.+-|..|+
T Consensus 41 ~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~ 79 (233)
T PRK09098 41 RDAVLAAARARAERIVAEARAQAEAILEAARREADRSAR 79 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555444
No 68
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=84.15 E-value=23 Score=29.38 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
.+-.+..+|..++.+|+..-..-|-.|+.+++..+..++.+.|.-+..-.
T Consensus 71 ~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~ 120 (281)
T PRK06669 71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAK 120 (281)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778999999999999999999999999999999988888776433
No 69
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=83.15 E-value=19 Score=27.77 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2196 27 KRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSR----DDVAAKIESDTKLKIDEMNKAVENNKENVIRKVL 100 (142)
Q Consensus 27 k~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~----~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll 100 (142)
..-..+|.+|+.+|..-++..+.+-+...........-.. ......++.+...-+..++..+..---.++..+|
T Consensus 73 ~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil 150 (175)
T PRK14472 73 RKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKII 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666666666666666666554443332211 1223334444444444444444433333333333
No 70
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=82.64 E-value=18 Score=27.20 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVE 89 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~ 89 (142)
++-....+...++..||..-......+..+|..|.+....+--.+....... ....++.+...-...++..+.
T Consensus 56 ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~-------a~~~l~~e~~~~~~~l~~qv~ 128 (141)
T PRK08476 56 DVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEA-------FAKQLANQKQELKEQLLSQMP 128 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHH
Confidence 3444556666677777766555555555555555544444443333322222 223334444444444444444
Q ss_pred hhHHHHHHH
Q psy2196 90 NNKENVIRK 98 (142)
Q Consensus 90 ~nk~~Vv~~ 98 (142)
.-++.++..
T Consensus 129 ~~~~~~~~~ 137 (141)
T PRK08476 129 EFKEALNAK 137 (141)
T ss_pred HHHHHHHHH
Confidence 444444433
No 71
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=82.56 E-value=19 Score=27.35 Aligned_cols=77 Identities=16% Similarity=0.309 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2196 16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENV 95 (142)
Q Consensus 16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~V 95 (142)
.++..++.+||..-...+.+|+.+|+.+.+....+-..+....... ...+++.+...-+..++.....-...+
T Consensus 77 ~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~-------a~~~i~~ek~~a~~~l~~~v~~lA~~i 149 (156)
T CHL00118 77 KQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNE-------ATKQLEAQKEKALKSLEEQVDTLSDQI 149 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555666666555555555554444433322 223444444555555555544444444
Q ss_pred HHHH
Q psy2196 96 IRKV 99 (142)
Q Consensus 96 v~~L 99 (142)
...|
T Consensus 150 a~ki 153 (156)
T CHL00118 150 EEKL 153 (156)
T ss_pred HHhh
Confidence 4443
No 72
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=82.49 E-value=17 Score=26.70 Aligned_cols=45 Identities=42% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRK----ARRLKQAKEEAQEDIEKYRQEREKI 54 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K----~krLKqAK~EA~~EIe~yr~~kE~e 54 (142)
+|-.|..+|..|+..|+..- ...+.+|+.+|...++..+..=+.+
T Consensus 65 ~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e 113 (140)
T PRK07353 65 QLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQ 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555543 3333344444444444333333333
No 73
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=81.94 E-value=20 Score=27.12 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 51 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~k 51 (142)
++|-.|.++|..|+.+|+..-.........+|..|++....+-
T Consensus 64 ~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a 106 (159)
T PRK13461 64 RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERA 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776644444444444444444433333
No 74
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=80.03 E-value=19 Score=25.56 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2196 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFM 63 (142)
Q Consensus 12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~ 63 (142)
=+|.+....++.+||..=...+...+.+++.+...|..+-+.+.........
T Consensus 21 ~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~ 72 (105)
T PF03179_consen 21 EEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELE 72 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 3566677777777777777777777777777777766666655554444443
No 75
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=79.66 E-value=26 Score=27.02 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 32 RLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 32 rLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
+|.+|+.+|..-++..+.+-+....
T Consensus 76 ~l~~a~~ea~~ii~~A~~ea~~~~~ 100 (173)
T PRK13460 76 RLNSAKDEANAIVAEAKSDALKLKN 100 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 76
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=79.61 E-value=26 Score=27.00 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60 (142)
Q Consensus 18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea 60 (142)
+..-.......-..+|.+|+.+|..-++..+.+-+........
T Consensus 65 ~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~ 107 (174)
T PRK07352 65 RLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEK 107 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445567777777777777777666666554443
No 77
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=79.54 E-value=46 Score=29.81 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea 60 (142)
|-.|| .+..-..+++..-.+.|.+|+.+|..-|+..+.+-+........
T Consensus 41 L~eAe-~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~ 89 (445)
T PRK13428 41 LAESA-TAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRA 89 (445)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 35666666666666667777777777777766666666554443
No 78
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=78.64 E-value=31 Score=30.95 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK-IFREYEAKF 62 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~-eFk~~ea~~ 62 (142)
...+||..|.+|+.+|+....+.+-+|...++..|.. ++=|. .|.....+.
T Consensus 264 ~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~--AeGda~rF~~i~~~Y 315 (419)
T PRK10930 264 YIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILE--AQGEVARFAKLLPEY 315 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHH
Confidence 3446666666666666666666666555555444443 23333 455444433
No 79
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=78.60 E-value=24 Score=26.07 Aligned_cols=51 Identities=29% Similarity=0.312 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 58 (142)
Q Consensus 8 IQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ 58 (142)
=..|-.|..+|..|+.+|+..-.+...++..+|..|++....+-+.+....
T Consensus 53 ~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e 103 (147)
T TIGR01144 53 QVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAE 103 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999888887655555555555555555444444444433
No 80
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.26 E-value=47 Score=30.49 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2196 14 AEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFM 63 (142)
Q Consensus 14 AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~ 63 (142)
+.+.|..++..|+..-..-+++|..+|+.++..++.+-+.++.....+..
T Consensus 19 ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele 68 (514)
T TIGR03319 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELE 68 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999988877888999999999999999999999888777664
No 81
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=76.56 E-value=34 Score=26.62 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 17 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI 54 (142)
Q Consensus 17 eA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~e 54 (142)
++...+++||......+.+|+.+|+.+.+..+.+-+.+
T Consensus 83 e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~e 120 (184)
T PRK13455 83 SYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEAS 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666665555555444
No 82
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=76.34 E-value=44 Score=27.92 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAA 71 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~ 71 (142)
|=.|-+.|.+||..|-..+..-|.||..+|.+=+.+-+.+.|.+.-+---...-..+....
T Consensus 47 l~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~~~~~~~E~~~L~qHV~wLve~e~lE~ 107 (224)
T PRK15354 47 VSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQHVKHLQEDENQFR 107 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4567788999999999999999999999999999999999999987554444433333333
No 83
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=76.31 E-value=35 Score=26.77 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF 62 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~ 62 (142)
.+-.++.+..+.+.+||..-.+-..+|++.+..|.+.=+..-|.+++....+.
T Consensus 59 eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~ 111 (155)
T PRK06569 59 EVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQN 111 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677889999999999999999999999999999999999998666444
No 84
>PRK06328 type III secretion system protein; Validated
Probab=75.96 E-value=41 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 46 (142)
Q Consensus 16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~ 46 (142)
-+|+.|++.||..-.+-+.+|..+++.-.+.
T Consensus 29 ~~A~~il~~a~~~ae~i~~ea~~e~E~i~ee 59 (223)
T PRK06328 29 LDAQELLEKTKEDSEAYTQETHEECEKLREE 59 (223)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999988888888887777765543
No 85
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=72.81 E-value=51 Score=27.01 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQED-------IEKYRQEREKIFREYEAK 61 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~E-------Ie~yr~~kE~eFk~~ea~ 61 (142)
.+..+..+...+++.||..=..-+.+|+.+|+.- ++.++.+.+.-+..-..+
T Consensus 34 ~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~e 92 (255)
T TIGR03825 34 ELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE 92 (255)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667888999999999999999999888865 355566666666654433
No 86
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=71.46 E-value=52 Score=26.47 Aligned_cols=47 Identities=32% Similarity=0.353 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
.|+.+|..|..+|+..-.+...+|+.+|+.-++.+....+.+-....
T Consensus 14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~ 60 (194)
T COG1390 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER 60 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887777888888888877777776666655443
No 87
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=70.68 E-value=41 Score=24.99 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 17 RAAEKVAEAKKRKARRLKQAKEEAQED 43 (142)
Q Consensus 17 eA~~iV~eARk~K~krLKqAK~EA~~E 43 (142)
+|..|++.||..-.+-+.+|..+++..
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~ 40 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEAS 40 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999888888888888877653
No 88
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=70.31 E-value=56 Score=26.39 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q psy2196 6 QGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMN 85 (142)
Q Consensus 6 ~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~ 85 (142)
.-|..-+.|+.++...+.+|..++.+.+..|+.+|.+-+-.-...++...-.-+ .+ -..+..+.
T Consensus 180 ~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae---------------~~-a~~~~~~~ 243 (266)
T cd03404 180 DAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ---------------GE-AARFESLL 243 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH---------------HH-HHHHHHHH
Confidence 457778889999999999999888888888988888877665555555432221 11 22355667
Q ss_pred HHHHhhHHHH
Q psy2196 86 KAVENNKENV 95 (142)
Q Consensus 86 ~~~~~nk~~V 95 (142)
..|+++.+-+
T Consensus 244 ~a~~~~~~~~ 253 (266)
T cd03404 244 AEYKKAPDVT 253 (266)
T ss_pred HHHhhChHHH
Confidence 7777764433
No 89
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=67.86 E-value=62 Score=25.97 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 23 AEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60 (142)
Q Consensus 23 ~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea 60 (142)
......-..+|.+|+.+|..-++..+.+-+........
T Consensus 99 ~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~ 136 (205)
T PRK06231 99 QQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEK 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344557777777777777777777766655544
No 90
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=65.71 E-value=73 Score=25.98 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 55 (142)
Q Consensus 18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eF 55 (142)
+...+++|+......+.+|+.+|+.+.+....+-..+.
T Consensus 62 ~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea 99 (246)
T TIGR03321 62 YEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEA 99 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444443333333
No 91
>KOG0163|consensus
Probab=65.67 E-value=1.2e+02 Score=30.51 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q psy2196 6 QGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMN 85 (142)
Q Consensus 6 ~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~ 85 (142)
.-||.|+++|..+.+-- .|.+|--..+..|+.|.+.-|...|++-+.-+..-.--.......+.++++++.+.-+
T Consensus 927 rk~qE~~E~ER~rrEae-----ek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~ 1001 (1259)
T KOG0163|consen 927 RKIQELAEAERKRREAE-----EKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQN 1001 (1259)
T ss_pred HHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777777776544321 2334445566667777776666555554433322222233444566677777666655
Q ss_pred HHHHhhHHHHHHH
Q psy2196 86 KAVENNKENVIRK 98 (142)
Q Consensus 86 ~~~~~nk~~Vv~~ 98 (142)
..-....|.-+..
T Consensus 1002 ~~Eqer~D~~la~ 1014 (1259)
T KOG0163|consen 1002 QLEQERRDHELAL 1014 (1259)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 92
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=65.00 E-value=56 Score=24.41 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDV 69 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~ 69 (142)
+..=+|..++..+|.+||..=..-+-+|-.+|+.+-..|=...+++-...-.+.++.....
T Consensus 21 ~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~ 81 (108)
T COG2811 21 EEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKE 81 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777788888877777777777777777777776666666665555555544433
No 93
>PRK12705 hypothetical protein; Provisional
Probab=64.85 E-value=1.2e+02 Score=28.11 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196 17 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF 62 (142)
Q Consensus 17 eA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~ 62 (142)
.|.+|+.+|++.-....+++-.+|..|+..+|.+-|.+++....+.
T Consensus 34 ~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 34 EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999888876666799999999999999999999998765544
No 94
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=62.68 E-value=61 Score=24.07 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 29 KARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 29 K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
-..+|.+|+.+|..-++.-+.+-+.......
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~ 91 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAK 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666665555555555444
No 95
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=62.33 E-value=75 Score=25.61 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 7 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 46 (142)
Q Consensus 7 GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~ 46 (142)
-|..-+.|+.++...+.+|..++...+..|+.+|++-+..
T Consensus 154 a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~ 193 (261)
T TIGR01933 154 AFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEE 193 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777777777665543
No 96
>PRK06937 type III secretion system protein; Reviewed
Probab=61.88 E-value=78 Score=25.01 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2196 17 RAAEKVAEAKKRKARRLKQAKE 38 (142)
Q Consensus 17 eA~~iV~eARk~K~krLKqAK~ 38 (142)
+|.+||+.||..-..-+.+|++
T Consensus 31 ~A~~il~~A~~~A~~i~~~A~~ 52 (204)
T PRK06937 31 SAEELVEAARQRAEEIEAEAQE 52 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777665555555543
No 97
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=60.55 E-value=44 Score=26.96 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 46 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~ 46 (142)
+...+||.+|..++.+|+....+.+-+|+.+++..+..
T Consensus 167 ~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~ 204 (261)
T TIGR01933 167 RYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINR 204 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888777777777666665554
No 98
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=60.32 E-value=90 Score=25.19 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF 62 (142)
Q Consensus 8 IQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~ 62 (142)
-+...+||.+|..++.+|+....+..-+|+.+++..+..=..+-+. |..+-...
T Consensus 193 ~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~-~~~~~~a~ 246 (266)
T cd03404 193 ERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAAR-FESLLAEY 246 (266)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH
Confidence 3445567777777777777777777777776666666554444443 44444443
No 99
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=59.10 E-value=30 Score=31.04 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDI 44 (142)
Q Consensus 8 IQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EI 44 (142)
+..-+.|+.+-...+.+|..++.+-+-.|+-+|++=|
T Consensus 251 f~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii 287 (419)
T PRK10930 251 FDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRIL 287 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666655
No 100
>PRK12704 phosphodiesterase; Provisional
Probab=56.56 E-value=1.6e+02 Score=27.04 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2196 15 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFM 63 (142)
Q Consensus 15 EkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~ 63 (142)
.+.|..++..|+..-..-+++|..+|+.++...+.+-+.++.....+..
T Consensus 26 k~~a~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele 74 (520)
T PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE 74 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336677777777666667788888888888777777777776665543
No 101
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=51.11 E-value=1.2e+02 Score=24.01 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 7 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIE 45 (142)
Q Consensus 7 GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe 45 (142)
+=.-|=.|..+|..||..|+.....-+.+|.++|..++-
T Consensus 32 a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~ 70 (191)
T PF06188_consen 32 AREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFW 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466899999999999999999888988888866653
No 102
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=49.50 E-value=1.4e+02 Score=24.05 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
+.+|+-.++|..+|+..--.-+..|+.+|+++.+.-+..-+..+.
T Consensus 2 ~~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~ 46 (194)
T COG1390 2 MELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIE 46 (194)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999996665555556666666666655555444444
No 103
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=49.24 E-value=1.1e+02 Score=25.96 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2196 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENN 91 (142)
Q Consensus 12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~n 91 (142)
.++|.+|+.|..+|+....+-+-+| .++-...+++=|.++-+......+.+..... ...-|+.+++.+..+
T Consensus 230 ~ege~~a~~i~a~A~~e~~~~~aeA----~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~-----~~~~le~~~~~~~~~ 300 (317)
T TIGR01932 230 SQGEEKAEEILGKAEYEVRKILSEA----YRTARIIKGEGDAEAAKIYSDAYGKDPEFYS-----FWRSLEAYEKSFKDN 300 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHccCHHHHH-----HHHHHHHHHHHhCCC
Confidence 3455556666666666655555443 3333455566666666555555554443322 134455555555433
No 104
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=49.19 E-value=1.1e+02 Score=22.72 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKAR 31 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~k 31 (142)
-|-.|..+|..|+.+|+.....
T Consensus 18 il~~A~~~a~~i~~~A~~~~e~ 39 (166)
T TIGR02499 18 ILAAARQRAEAILADAEEEAEA 39 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999986433
No 105
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=49.15 E-value=1.2e+02 Score=23.38 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 6 QGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 6 ~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
.+|+.|++-|.+... +......-+..++-+++=..++..-+..=+.+|+
T Consensus 80 ~~~~~l~~~e~~~~~--~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~ 128 (145)
T PF14942_consen 80 SMCSRLQQKEQEKQK--DDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFR 128 (145)
T ss_pred HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544 2222222223333444444444444444444443
No 106
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=48.56 E-value=98 Score=25.22 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 6 QGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 46 (142)
Q Consensus 6 ~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~ 46 (142)
+-|..-..|+.+....+.+|..+|...+..|+.+|++.+..
T Consensus 147 ~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~ 187 (262)
T cd03407 147 RAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQ 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 45667788999999999999999999999998888887765
No 107
>PRK09098 type III secretion system protein HrpB; Validated
Probab=46.80 E-value=1.6e+02 Score=24.14 Aligned_cols=33 Identities=39% Similarity=0.420 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE 42 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~ 42 (142)
-|=.|..+|++||++||..-..-+-+|+.+++.
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999988888888888765
No 108
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=42.54 E-value=1.4e+02 Score=22.05 Aligned_cols=7 Identities=14% Similarity=0.454 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy2196 40 AQEDIEK 46 (142)
Q Consensus 40 A~~EIe~ 46 (142)
-+.+++.
T Consensus 48 ~~~~l~~ 54 (158)
T PF03938_consen 48 LQKELQA 54 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333433
No 109
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.16 E-value=2e+02 Score=23.79 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2196 18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIR 97 (142)
Q Consensus 18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~ 97 (142)
+...+..|+......+.+|+.+|+.+.+....+-..+-.... ......++.+...-+..++..+..--=.+..
T Consensus 62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~-------~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~ 134 (250)
T PRK14474 62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATAR-------DEWLEQLEREKQEFFKALQQQTGQQMVKIIR 134 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555544443333333332222 2233445555555555555554444444444
Q ss_pred HHHHh
Q psy2196 98 KVLDL 102 (142)
Q Consensus 98 ~Ll~~ 102 (142)
.+|..
T Consensus 135 kiL~~ 139 (250)
T PRK14474 135 AALAD 139 (250)
T ss_pred HHHHh
Confidence 44443
No 110
>PF01468 GA: GA module; InterPro: IPR002988 Protein G-related albumin-binding (GA) modules occur on the surface of numerous Gram-positive bacterial pathogens. Protein G of group C and G Streptococci interacts with the constant region of IgG and with human serum albumin. The GA module is composed of a left-handed three-helix bundle and is found in a range of bacterial cell surface proteins [, ]. GA modules may promote bacterial growth and virulence in mammalian hosts by scavenging albumin-bound nutrients and camouflaging the bacteria. Variations in sequence give rise to differences in structure and function between GA modules in different proteins, which could alter pathogenesis and host specificity due to their varied affinities for different species of albumin []. Proteins containing a GA module include PAB from Peptostreptococcus magnus [].; GO: 0009405 pathogenesis; PDB: 2DGJ_B 1GJS_A 1GJT_A 2FS1_A 1GAB_A 2J5Y_B 1PRB_A 1TF0_B 2VDB_B 1XVH_B ....
Probab=41.25 E-value=64 Score=20.93 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy2196 23 AEAKKR--KARRLKQAKEEAQEDIEKYR 48 (142)
Q Consensus 23 ~eARk~--K~krLKqAK~EA~~EIe~yr 48 (142)
..|+.. -..+|..||..|..+|+.+-
T Consensus 2 ~~ak~~Lng~~~L~~aK~~A~~~I~~L~ 29 (60)
T PF01468_consen 2 NQAKNALNGDQKLANAKQNAKQEINQLT 29 (60)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHCCT
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344443 57899999999999999876
No 111
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=30.64 E-value=1.7e+02 Score=23.17 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccccccchhhh
Q psy2196 81 IDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115 (142)
Q Consensus 81 I~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N~~ 115 (142)
...+-....+|++. ++.++..=+.+.|+-+.|--
T Consensus 99 a~~i~~~l~~~~~~-~~~m~~ee~g~~~~~~~~p~ 132 (213)
T PF01988_consen 99 AEEIAEELSKDKDA-LDFMMREELGLSPEEEESPW 132 (213)
T ss_pred HHHHHHHHHhCchH-HHHHHhhhccCCccccchHH
Confidence 34455677788888 99999888888886554433
No 112
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=30.35 E-value=2.3e+02 Score=21.15 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 19 AEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59 (142)
Q Consensus 19 ~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e 59 (142)
.+-|+.-++..-.-+|.|+..-+.++..+-.+....|+.+.
T Consensus 23 dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l 63 (111)
T PRK06397 23 DKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAAL 63 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444555555555555555544555554443
No 113
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=29.44 E-value=1.2e+02 Score=23.80 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=47.5
Q ss_pred HHHHHHHHH--HHhcCChhHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccch
Q psy2196 51 REKIFREYE--AKFMGSRDDVA-----------AKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHK 112 (142)
Q Consensus 51 kE~eFk~~e--a~~~Gs~~~~~-----------~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~ 112 (142)
+..||..|- ....|-+++-. -++|.+|...+..|-.+.-.-...|-.++-.+--+.+|++|.
T Consensus 33 r~AE~esfs~q~~~lGl~~n~alRVavrri~GFLEiDa~tr~~l~~il~sIg~la~Nin~i~~Aa~~~~~pd~e~ 107 (147)
T PF07328_consen 33 RSAEYESFSAQARELGLSDNMALRVAVRRIGGFLEIDAETRQKLEDILRSIGGLATNINQILKAANRTPRPDYEA 107 (147)
T ss_pred hHHHHHHHHHHHHHhCCchhhHHHHHHHHHcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHH
Confidence 345555443 33456555432 257899999999999999999999999999999999999985
No 114
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=29.09 E-value=3e+02 Score=22.01 Aligned_cols=123 Identities=13% Similarity=0.253 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHH
Q psy2196 5 TQGIQQLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDD-VAAKIESDTKL 79 (142)
Q Consensus 5 s~GIQqLL~AEkeA~~iV~eARk~K~kr----LKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~-~~~~le~eT~~ 79 (142)
+.|+-.=|.+=-.+.+=|.++--...+- |+-..++=+++..++...-+.-|..+........+. ....+. +-..
T Consensus 14 w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~in-E~t~ 92 (165)
T PF09602_consen 14 WKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSIN-EWTD 92 (165)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3344444444444444444443333222 666788888888888888888888877666222222 223333 5566
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccccccchhhhhh-----hhhhhHHHHHH
Q psy2196 80 KIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAA-----NQTQGIQQLLA 128 (142)
Q Consensus 80 kI~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N~~~~-----~~~~~~~~~~~ 128 (142)
+..+|...+...--.-.+-.++++..++-.+|++...- .+..++|-.+.
T Consensus 93 k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~ 146 (165)
T PF09602_consen 93 KLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLD 146 (165)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777666666667777888888888899888766 44556665443
No 115
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=27.64 E-value=3e+02 Score=21.58 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy2196 15 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKEN 94 (142)
Q Consensus 15 EkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~ 94 (142)
|+=-.+|..+|+.....-+.+|+.+|..=+..-+..-+.....+....-........++.. ..+|. .+...-.-++.
T Consensus 4 e~i~~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis--~A~Le-~R~~~L~aree 80 (185)
T PRK01194 4 EDVIKDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIID--KANIE-ARSIKREKRRE 80 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHH-HHHHHHHHHHH
Confidence 3445678899999988888888888888777777777777666665443222222222221 11221 12244445566
Q ss_pred HHHHHHHhhcccccccc
Q psy2196 95 VIRKVLDLVYDIKPELH 111 (142)
Q Consensus 95 Vv~~Ll~~V~dVkpevh 111 (142)
||+.+++.+.+-=-.++
T Consensus 81 ~I~~v~~~a~e~L~~l~ 97 (185)
T PRK01194 81 ILKDYLDIAYEHLMNIT 97 (185)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 67666666654433333
No 116
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.13 E-value=21 Score=25.66 Aligned_cols=35 Identities=37% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIE 45 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe 45 (142)
|..|++.+.+++..|...-...+..|+.+|..=|+
T Consensus 69 l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~ 103 (131)
T PF05103_consen 69 LIQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIE 103 (131)
T ss_dssp -----------------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555555555555554333
No 117
>PF12750 Maff2: Maff2 family; InterPro: IPR024272 This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein family may contain transmembrane helices.
Probab=26.48 E-value=35 Score=23.59 Aligned_cols=11 Identities=55% Similarity=0.933 Sum_probs=9.1
Q ss_pred chhHHHHHHHH
Q psy2196 3 SQTQGIQQLLA 13 (142)
Q Consensus 3 sqs~GIQqLL~ 13 (142)
+.||||.||+.
T Consensus 41 aksqgiKQlma 51 (70)
T PF12750_consen 41 AKSQGIKQLMA 51 (70)
T ss_pred hhhhhHHHHHc
Confidence 56899999974
No 118
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.92 E-value=2.9e+02 Score=20.47 Aligned_cols=28 Identities=36% Similarity=0.629 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 29 KARRLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 29 K~krLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
+...|++--++++.|++.||.+=...|-
T Consensus 26 ~q~~l~~eL~~~k~el~~yk~~V~~HF~ 53 (128)
T PF06295_consen 26 KQAKLEQELEQAKQELEQYKQEVNDHFA 53 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888999999999999998885
No 119
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=24.68 E-value=1.9e+02 Score=22.78 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 52 (142)
Q Consensus 16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE 52 (142)
.+|..+.++|... ..+..|+.+|+.-|..=+.+-+
T Consensus 179 ~~a~~~~aea~~~--~~~~~Aea~a~a~~~~a~gea~ 213 (242)
T cd03405 179 EEAERIRADADRE--RTVILAEAYREAQEIRGEGDAE 213 (242)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHH
Confidence 4444444444444 3344555555555544333333
No 120
>PRK11677 hypothetical protein; Provisional
Probab=23.23 E-value=3.5e+02 Score=20.71 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 28 RKARRLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 28 ~K~krLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
.+.+.|..--+.++.|+++||.+=...|-
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999985
No 121
>PRK15322 invasion protein OrgB; Provisional
Probab=22.82 E-value=4.5e+02 Score=21.87 Aligned_cols=31 Identities=35% Similarity=0.385 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQE 42 (142)
Q Consensus 12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~ 42 (142)
|.+=+.|..++.+|++.=..-+++|..||+.
T Consensus 8 l~~~~~a~~l~~qA~~kA~~ii~qA~~eaE~ 38 (210)
T PRK15322 8 LERYFSAERLEQQARRRAKRILRQAEEEAET 38 (210)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777666654
No 122
>PRK10428 hypothetical protein; Provisional
Probab=20.79 E-value=2.7e+02 Score=18.82 Aligned_cols=36 Identities=14% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE 50 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~ 50 (142)
++++|=.+...+..+... .-.+|++|..+|+.|...
T Consensus 29 ~~~~eG~~dql~GkiQe~----~G~~Kd~a~~~~~~~~~~ 64 (69)
T PRK10428 29 MTVIEGKRDQLVGKIQER----YGYQKDQAEKEVVDWETR 64 (69)
T ss_pred HHHHcCcHHHHHHHHHHH----HhHHHHHHHHHHHHHHHh
Confidence 566666666666666554 678999999999998764
No 123
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.17 E-value=1.7e+02 Score=19.90 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2196 71 AKIESDTKLKIDEMNKAVENNKENVIRKVLDLV 103 (142)
Q Consensus 71 ~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~V 103 (142)
++||.++.-.+++|...++..-..|-+.+|=.|
T Consensus 2 E~ldQ~iTl~LQeID~N~s~~~~iit~~IlP~v 34 (66)
T PF08655_consen 2 EQLDQEITLLLQEIDSNFSRCHRIITDKILPAV 34 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 478999999999999999999988877765433
Done!