Query psy2196
Match_columns 142
No_of_seqs 105 out of 267
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:41:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_G V-type proton ATPase su 100.0 3.3E-45 1.1E-49 272.8 11.1 113 2-114 6-118 (119)
2 3v6i_A V-type ATP synthase sub 96.2 0.047 1.6E-06 41.4 10.2 90 13-103 10-111 (187)
3 2k6i_A Uncharacterized protein 95.8 0.018 6E-07 37.5 5.2 35 8-42 18-52 (56)
4 1l2p_A ATP synthase B chain; a 94.9 0.34 1.2E-05 30.4 9.1 47 9-55 2-48 (61)
5 4efa_E V-type proton ATPase su 93.3 1.5 5.1E-05 34.2 11.6 94 12-105 26-131 (233)
6 3v6i_B V-type ATP synthase, su 92.5 2.2 7.4E-05 30.7 14.1 85 9-104 20-104 (105)
7 2kk7_A V-type ATP synthase sub 91.6 0.42 1.4E-05 29.9 5.2 31 13-43 18-48 (52)
8 2dm9_A V-type ATP synthase sub 88.9 0.46 1.6E-05 35.0 4.3 44 13-56 14-57 (198)
9 2dm9_A V-type ATP synthase sub 60.9 2 6.8E-05 31.5 0.3 71 11-84 23-97 (198)
10 3v6i_B V-type ATP synthase, su 58.9 47 0.0016 23.7 10.8 55 5-63 5-59 (105)
11 2kk7_A V-type ATP synthase sub 52.2 38 0.0013 20.7 6.0 47 1-53 1-47 (52)
12 1l2p_A ATP synthase B chain; a 42.3 56 0.0019 19.8 9.7 36 21-56 3-38 (61)
13 3v6i_A V-type ATP synthase sub 35.4 1.3E+02 0.0045 22.0 12.7 83 21-106 7-89 (187)
14 1use_A VAsp, vasodilator-stimu 31.1 84 0.0029 19.2 4.2 34 71-104 7-40 (45)
15 4efa_E V-type proton ATPase su 29.2 1.9E+02 0.0064 22.0 14.1 85 15-106 18-106 (233)
16 2w72_C Human hemoglobin A; iro 26.7 1.3E+02 0.0045 20.6 5.3 43 78-120 4-49 (141)
17 3ghg_A Fibrinogen alpha chain; 26.7 2.7E+02 0.0092 25.1 8.3 77 10-92 54-130 (562)
No 1
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=100.00 E-value=3.3e-45 Score=272.82 Aligned_cols=113 Identities=34% Similarity=0.535 Sum_probs=94.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q psy2196 2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKI 81 (142)
Q Consensus 2 asqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI 81 (142)
-|||+|||+||+||++|++||++||++|++||||||+||++||+.||.++|++|+.|++.++|+++++..+++.+|+.+|
T Consensus 6 mSqs~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki 85 (119)
T 4efa_G 6 MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGEL 85 (119)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccccccchhh
Q psy2196 82 DEMNKAVENNKENVIRKVLDLVYDIKPELHKNF 114 (142)
Q Consensus 82 ~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N~ 114 (142)
+.|+++|++|++.||++||++||||+|+||+|.
T Consensus 86 ~~i~~~~~~~k~~Vv~~Ll~~V~dvkpeiH~Na 118 (119)
T 4efa_G 86 AEIKKIAEKKKDDVVKILIETVIKPSAEVHINA 118 (119)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 999999999999999999999999999999995
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=96.24 E-value=0.047 Score=41.43 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCChhHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK------------FMGSRDDVAAKIESDTKLK 80 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~------------~~Gs~~~~~~~le~eT~~k 80 (142)
+|+.+|..|+++|+..-..-+.+|+.+|+...+.....-|.+.+..... .+.-......++-.++...
T Consensus 10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~ 89 (187)
T 3v6i_A 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA 89 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999888877776666544322 2334455556666666666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhh
Q psy2196 81 IDEMNKAVENNKENVIRKVLDLV 103 (142)
Q Consensus 81 I~~i~~~~~~nk~~Vv~~Ll~~V 103 (142)
|..+-.+ ..+.+-+.++++..+
T Consensus 90 L~~~~~~-~~Y~~~L~~Li~ea~ 111 (187)
T 3v6i_A 90 LEALPQK-PEWPEVVRKLALEAL 111 (187)
T ss_dssp HHHGGGS-TTHHHHHHHHHHHHH
T ss_pred HHhhhCC-ccHHHHHHHHHHHHH
Confidence 6665544 224444444444444
No 3
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=95.84 E-value=0.018 Score=37.52 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE 42 (142)
Q Consensus 8 IQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~ 42 (142)
|..+-.||.+|.+||.+|.+.+..++..|+.+|..
T Consensus 18 L~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke 52 (56)
T 2k6i_A 18 IKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK 52 (56)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455799999999999999999999999999974
No 4
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=94.95 E-value=0.34 Score=30.44 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 55 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eF 55 (142)
+.|-.|..+|..||..|+....+...++..+|..|.+....+--.+.
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~ei 48 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEI 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999888888777777777776655444433
No 5
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=93.31 E-value=1.5 Score=34.17 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--------HhcCChhHHHHHHHHHHHH
Q psy2196 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY----EA--------KFMGSRDDVAAKIESDTKL 79 (142)
Q Consensus 12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~----ea--------~~~Gs~~~~~~~le~eT~~ 79 (142)
-+|+..|.+|..+|...-..-..++..++...|..+...++++.... .+ ..+....+...++-.++..
T Consensus 26 qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~ 105 (233)
T 4efa_E 26 KEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKE 105 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999887555555555555555555554444443321 11 1234455666667777777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcc
Q psy2196 80 KIDEMNKAVENNKENVIRKVLDLVYD 105 (142)
Q Consensus 80 kI~~i~~~~~~nk~~Vv~~Ll~~V~d 105 (142)
+|..+..+-....+-+..+++..++.
T Consensus 106 ~L~~~~~d~~~Y~~lL~~Li~eal~~ 131 (233)
T 4efa_E 106 KLSGIANNRDEYKPILQSLIVEALLK 131 (233)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 77777554444555444555554444
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=92.49 E-value=2.2 Score=30.74 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2196 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAV 88 (142)
Q Consensus 9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~ 88 (142)
++|=.|-++|..+|..|...=..-|.+|...|...-.+|+..-+.+-. .+..+........-+.++...
T Consensus 20 ~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~-----------ri~~eara~Aeaea~~v~~~A 88 (105)
T 3v6i_B 20 ERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETE-----------ALLARYRERAEAEAKAVREKA 88 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555444444555555555555555555444433 344555666777788888999
Q ss_pred HhhHHHHHHHHHHhhc
Q psy2196 89 ENNKENVIRKVLDLVY 104 (142)
Q Consensus 89 ~~nk~~Vv~~Ll~~V~ 104 (142)
..+-+..|..+|..|+
T Consensus 89 ~~r~~~Av~~vLkeVL 104 (105)
T 3v6i_B 89 MARLDEAVALVLKEVL 104 (105)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHhhC
Confidence 9999999999999886
No 7
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=91.57 E-value=0.42 Score=29.94 Aligned_cols=31 Identities=39% Similarity=0.499 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQED 43 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~E 43 (142)
+|..+|..|+++|+..-..-+.+|+.+|+.+
T Consensus 18 eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 18 DAKAEANKIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888899999999998888888888888764
No 8
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=88.94 E-value=0.46 Score=35.02 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
+|+.+|..|+++|+.....-+.+|+.+|..+.+.+..+-+.+-.
T Consensus 14 ~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~ 57 (198)
T 2dm9_A 14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAE 57 (198)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999988887776666555444
No 9
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=60.94 E-value=2 Score=31.48 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q psy2196 11 LLAAEKRAAEKVAEAKKRK----ARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEM 84 (142)
Q Consensus 11 LL~AEkeA~~iV~eARk~K----~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i 84 (142)
|-+|+.+|.+|+.+|+..- ...+.+|+.++..+...-...-+.+++.. ...-.......+=..+...|..+
T Consensus 23 l~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~---~l~~~~ev~~~~~~~a~~~l~~l 97 (198)
T 2dm9_A 23 LNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRK---RLAIQEEIISSVLEEVKRRLETM 97 (198)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567777777777776653 33344444444443333333333333222 22333444445545555555554
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=58.89 E-value=47 Score=23.75 Aligned_cols=55 Identities=31% Similarity=0.379 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2196 5 TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFM 63 (142)
Q Consensus 5 s~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~ 63 (142)
..-|+.|-.=|..=...+.+||+.=...++.|..+|..=+.. -|..-+...++|.
T Consensus 5 ~gllk~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~e----Ae~~a~~l~ae~r 59 (105)
T 3v6i_B 5 LGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEE----AEAKAKALEAQYR 59 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 367889988888889999999999999999988888776654 4455555555553
No 11
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=52.18 E-value=38 Score=20.72 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=34.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 1 MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 53 (142)
Q Consensus 1 Masqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~ 53 (142)
|+..-.|+..| -.+|+.+|+..-..-|.+|+.+|..=++.-+.+-+.
T Consensus 1 ~~~~~~gle~i------~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 1 MAVKLMGVDKI------KSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp CCTTTSCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455555 468999999999999999999999888886665443
No 12
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=42.32 E-value=56 Score=19.83 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 21 KVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 56 (142)
Q Consensus 21 iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk 56 (142)
.+.+||..-...+.+|+..|...++....+-..+-.
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~ 38 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERT 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555444444
No 13
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=35.37 E-value=1.3e+02 Score=22.03 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2196 21 KVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVL 100 (142)
Q Consensus 21 iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll 100 (142)
|=.+|+..-..-+.+|+.+|..=+++.+.+-+............... ...+...-.-.-..+...-.-++.+++.++
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~---~~~~r~~s~a~le~r~~~L~ar~eli~~v~ 83 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYR---AALRRAESAGELLVATARTQARGEVLEEVR 83 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777788888888888888777777766655443311111 111111122222233344455566666666
Q ss_pred Hhhccc
Q psy2196 101 DLVYDI 106 (142)
Q Consensus 101 ~~V~dV 106 (142)
+.|..-
T Consensus 84 ~~a~~~ 89 (187)
T 3v6i_A 84 RRVREA 89 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 14
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=31.06 E-value=84 Score=19.19 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q psy2196 71 AKIESDTKLKIDEMNKAVENNKENVIRKVLDLVY 104 (142)
Q Consensus 71 ~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~V~ 104 (142)
.+++.=-++-|.++...+++-|+.+|+-+.+-.+
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788899999999999999998877654
No 15
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=29.20 E-value=1.9e+02 Score=21.97 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196 15 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK----IFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVEN 90 (142)
Q Consensus 15 EkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~----eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~ 90 (142)
++-.+-|.++|+..-..-+..|.+|+..|......+... .|.+.+.+..-... ..--.-....+...-.
T Consensus 18 ~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~-------i~~S~~~~~aR~~vL~ 90 (233)
T 4efa_E 18 NKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQ-------ITKSTIANKMRLKVLS 90 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 455677889999888888889999998887776554433 33333322211100 0111111233344455
Q ss_pred hHHHHHHHHHHhhccc
Q psy2196 91 NKENVIRKVLDLVYDI 106 (142)
Q Consensus 91 nk~~Vv~~Ll~~V~dV 106 (142)
-++.+|+.+++.+..-
T Consensus 91 ar~e~i~~v~~~a~~~ 106 (233)
T 4efa_E 91 AREQSLDGIFEETKEK 106 (233)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777776665544
No 16
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=26.74 E-value=1.3e+02 Score=20.61 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh---hHHHHHHHHHHhhcccccccchhhhhhhhh
Q psy2196 78 KLKIDEMNKAVEN---NKENVIRKVLDLVYDIKPELHKNFRAANQT 120 (142)
Q Consensus 78 ~~kI~~i~~~~~~---nk~~Vv~~Ll~~V~dVkpevh~N~~~~~~~ 120 (142)
..++..|+.++.. +.+.+...++..++...|++-.=|...++.
T Consensus 4 ~~~~~~v~~sw~~v~~~~~~~g~~~y~rlF~~~P~~~~~F~~~d~~ 49 (141)
T 2w72_C 4 PADKTNVKAAWGKVGAHAGEYGAEAYERMFLSFPTTKTYFPHFDLS 49 (141)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGCTTSCCS
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHChhHHHHHHhCCCC
Confidence 3445556665544 678899999999999999998877654433
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.70 E-value=2.7e+02 Score=25.09 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2196 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVE 89 (142)
Q Consensus 10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~ 89 (142)
.|++.|+.-..+|++=|+.- .+- ..--+++++|-...-..++.....+. .+++...++-.+-+..|.-|+..+.
T Consensus 54 lLdkqErDltkrINELKnqL----Edl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSL----FEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----THH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHH----HHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999888762 222 34456677776666666655444443 5555555555555555655555555
Q ss_pred hhH
Q psy2196 90 NNK 92 (142)
Q Consensus 90 ~nk 92 (142)
.+.
T Consensus 128 nQl 130 (562)
T 3ghg_A 128 EKV 130 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
Done!