RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2196
(142 letters)
>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P,
hydrogen ION transport, hydrolase, ION transport,
transport; NMR {Saccharomyces cerevisiae}
Length = 60
Score = 47.3 bits (112), Expect = 1e-08
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 1 MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59
M SQ GI LL AEK A E V++A+K + +LKQAK +A ++I+ Y+ +++K +E+E
Sbjct: 1 MVSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFE 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 9e-05
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 25/104 (24%)
Query: 36 AKEEAQEDIEKYRQEREKIFREYEAKFMGSRD--DVAAKIESDTKLKIDEMNKAVENNKE 93
+ + ++ Q E+E ++ D +AAK+ + + + +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK--------TK 120
Query: 94 NVIRKVLDLVYDIKPELHKN-----FRAANQT----------QG 122
+I+ + K K FRA + QG
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Score = 34.3 bits (78), Expect = 0.011
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 9 QQLLAA-EKRAAEKVAEA-KKRKARRLKQAKEEAQEDIEKYRQEREKIF 55
QQ +AA + RA + V K +++ + + +E+ +F
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV---EGHLF 1896
Score = 26.9 bits (59), Expect = 2.6
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 18/80 (22%)
Query: 64 GSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRK---VLDLVYDIKPELHKNFRAANQT 120
S + A + +A++ E V ++ ++++V N+ NQ
Sbjct: 1804 RSNYGMIAINPGRVAASFSQ--EALQYVVERVGKRTGWLVEIV---------NYNVENQ- 1851
Query: 121 QGIQQLLAAEKRAAEKVAEA 140
Q + A + RA + V
Sbjct: 1852 ---QYVAAGDLRALDTVTNV 1868
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 6e-04
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 15 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF---REYEAKFMGSRDD 68
KR E A +K + ++AK++ +E ++ ++ EK R + F D
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 27.8 bits (61), Expect = 0.95
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 32 RLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENN 91
+ + +E E I K+R+E+ K +E +A + K + D + ++ VE N
Sbjct: 76 QADRLTQEP-ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 92 KEN 94
K N
Sbjct: 135 KIN 137
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 35.2 bits (80), Expect = 0.005
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 2/128 (1%)
Query: 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAK 72
A + R EA AK EA+ E R E E + + K + A+
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Query: 73 IESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKR 132
+E K++ E+ A + V + + +++ + K A I+ L A
Sbjct: 759 LERVKKVREMELIYARAQLELEVSKA--QQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
Query: 133 AAEKVAEA 140
K+ ++
Sbjct: 817 MQVKLLQS 824
Score = 25.2 bits (54), Expect = 9.7
Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 1/142 (0%)
Query: 2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI-FREYEA 60
+ + +Q + + E A+ + ++ + + + E Q+ +++ E+ + E EA
Sbjct: 652 DALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA 711
Query: 61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQT 120
M AK E++++ + + + + + L + + + E K R
Sbjct: 712 MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELI 771
Query: 121 QGIQQLLAAEKRAAEKVAEAKK 142
QL +A + K
Sbjct: 772 YARAQLELEVSKAQQLANVEAK 793
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.070
Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 35/166 (21%)
Query: 1 MASQTQGIQQLLAAEKRA-----AEKVAEAKKRKARRLK---QAKEEAQEDIE---KYRQ 49
++ Q + +Q+ + R + +++ + + + ++ D + KY
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 50 EREKIFREYEAKFMGSRDD---------------VAAKIESDTKLKIDEMNKAV------ 88
R + + + + R VA + K++ +M+ +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLK 190
Query: 89 -ENNKENVIRKVLDLVYDIKPELHKN-FRAANQTQGIQQLLAAEKR 132
N+ E V+ + L+Y I P ++N I + A +R
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.0 bits (70), Expect = 0.11
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 4/137 (2%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAK--EEAQEDIEKYRQEREKIFREYEAKFMGS 65
+ L EK K K + E + EK RQE EKI R+ E +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072
Query: 66 RDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQ 125
+ +A +LK E + + ++ D L K + +Q+
Sbjct: 1073 HEQIAELQAQIAELK--AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130
Query: 126 LLAAEKRAAEKVAEAKK 142
L +EK A K + K+
Sbjct: 1131 DLESEKAARNKAEKQKR 1147
Score = 29.4 bits (66), Expect = 0.47
Identities = 19/134 (14%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE---YEAKFMGSRDD 68
+ A E+ ++ + + ++++Q + +E +E+ R+K+ E + K DD
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 69 VAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLA 128
+ + + KL + K +E ++ + + K + + ++ L
Sbjct: 992 ILIMEDQNNKLT--KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049
Query: 129 AEKRAAEKVAEAKK 142
E+++ +++ + K+
Sbjct: 1050 KEEKSRQELEKIKR 1063
Score = 25.6 bits (56), Expect = 9.2
Identities = 16/126 (12%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 17 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESD 76
+ + + K + L EE + + +QE E+I E EA+ + E +
Sbjct: 891 CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR---------IEEEEE 941
Query: 77 TKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKRAAEK 136
++ K ++ ++ ++ + + + A + + ++ + + K
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 137 VAEAKK 142
+ + +K
Sbjct: 1002 LTKERK 1007
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 29.3 bits (65), Expect = 0.53
Identities = 7/72 (9%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 23 AEAKKRKARRLKQAKEEAQEDIEKYRQER-----EKIFRE-YEAKFMGSRDDVAAKIESD 76
+ + +AK++ + ++ + RE +E + ++ K
Sbjct: 673 GPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRL 732
Query: 77 TKLKIDEMNKAV 88
++ + ++N
Sbjct: 733 AEVNLKDLNNVK 744
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 28.5 bits (64), Expect = 0.86
Identities = 6/60 (10%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 4 QTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQ------AKEEAQEDIEKYRQEREKIFRE 57
+ + + + EA+ R + +++ K +++R+++F +
Sbjct: 212 TYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEK 271
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.5 bits (63), Expect = 0.97
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 23 AEAKKRKARRLKQAKEEAQEDIEKYRQER-----EKIFRE-YEAKFMGSRDDVAAKIESD 76
A+ K R +K+A+ + E I+ + R RE +EAK +
Sbjct: 679 ADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRS 738
Query: 77 TKLKIDEMNKAV 88
+ + + N
Sbjct: 739 AEHSLKDSNNVK 750
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 27.9 bits (62), Expect = 1.3
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 23 AEAKKRKARRLKQAKEEAQEDIEKYRQER------EKIFREYEAKFMGSRDDVAAKIESD 76
+ KK + +AK E I+KY+ + E + + D + +
Sbjct: 655 DDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDI 714
Query: 77 TKLKIDEMN 85
+D N
Sbjct: 715 ASKYLDPFN 723
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.9 bits (61), Expect = 1.4
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Query: 9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDD 68
++L A + + L Q +EE +E + K ++ ++ + +E K
Sbjct: 293 RKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQK 352
Query: 69 VAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLA 128
+ E++ + + ++M K +E + + K D K R Q + L
Sbjct: 353 LKDS-EAELQRRHEQMKKNLEAQHKELEEKRRQF-EDEKANWEAQQRILEQQNSSRTLEK 410
Query: 129 AEKR 132
+K+
Sbjct: 411 NKKK 414
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 27.6 bits (62), Expect = 1.4
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI 54
I+ L ++ E V + Q + Q + R+ R+++
Sbjct: 86 IRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQL 132
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 27.0 bits (60), Expect = 2.2
Identities = 6/50 (12%), Positives = 18/50 (36%)
Query: 2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 51
+G+ L + + K+ + +R +Q + + + +R
Sbjct: 242 GLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHERLHQR 291
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.4 bits (61), Expect = 2.2
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 13/143 (9%)
Query: 13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAK 72
+ + R +A Q + +RE + EA+ + +
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Query: 73 IES---DTKLKIDEMN----------KAVENNKENVIRKVLDLVYDIKPELHKNFRAANQ 119
+E+ + KIDE N +E K+ V ++ + A N+
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
Query: 120 TQGIQQLLAAEKRAAEKVAEAKK 142
+Q+ +A ++ + KK
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKK 1008
Score = 25.8 bits (57), Expect = 6.3
Identities = 14/146 (9%), Positives = 44/146 (30%), Gaps = 11/146 (7%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ------EDIEKYRQEREKIFREYEAK 61
+ + A++ + K +AR +++ K+ +++ E+ K ++ K
Sbjct: 891 VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950
Query: 62 FMGSRDDVAAKIES-----DTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRA 116
+ + E + +E K N ++ ++ L ++ +
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Query: 117 ANQTQGIQQLLAAEKRAAEKVAEAKK 142
+ ++ K
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLK 1036
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 26.7 bits (60), Expect = 2.6
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI 54
+ L++ +E+ + + + + +++K + EKI
Sbjct: 184 MCDLVSDFDGFSERFKVLANQYKSIYPTLEIDIEGELQKLKGYMEKI 230
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 26.7 bits (59), Expect = 3.1
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 55
+L AA +R+ ++ RR+ +E+ + Y E +
Sbjct: 373 ELDAAIERSLTRLDGDAVLANRRMLNLADESPDGFRAYMAEFALMQ 418
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 26.7 bits (59), Expect = 3.1
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 51
A + +G+ +L +R + + A + ARR Q + + + +R
Sbjct: 265 AVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDR 314
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 26.4 bits (57), Expect = 3.7
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 15 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF---REYEAKFMGSRDD 68
KR E A +K + ++AK++ +E ++ ++ EK R + F D
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 166
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 25.7 bits (56), Expect = 3.7
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 20 EKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 52
+ AE + + K+A EEA + ++ +
Sbjct: 75 KSFAEGQTSINKTFKKALEEAAKRFQELKASGP 107
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 26.4 bits (58), Expect = 4.3
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 51
A +GI ++ K + + + + A+R KQ K I++ E
Sbjct: 260 ARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLIQESVLEH 309
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 26.3 bits (58), Expect = 4.5
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 51
A + +GI ++ A + + + + R +Q+ E ++ E+
Sbjct: 242 ALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNH 291
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; HET: SSA; 2.60A
{Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A*
2zr3_A
Length = 455
Score = 26.0 bits (58), Expect = 4.6
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARR---------LKQAKEEAQEDIEKYRQEREKI 54
+ ++L + K+ E + + R ++ E E + K R+ ++I
Sbjct: 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRI 85
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold,
hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4}
PDB: 2o0h_A* 2o0k_A*
Length = 385
Score = 26.2 bits (56), Expect = 5.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 32 RLKQAKEEAQEDIEKYRQER----EKIFR-EYEAKFMGS 65
RL ++ + + Q FR E+ A F G+
Sbjct: 346 RLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGT 384
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron}
SCOP: b.7.5.1
Length = 147
Score = 25.6 bits (56), Expect = 5.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 73 IESDTKLKIDEMNKAVENNKENVIRKVL----DLVYDIKPELHKNFR 115
+E +TKL ++E K V N E V +++ IKP + R
Sbjct: 62 VEPNTKLLLEEFTKDVLNEMERVAVQLIAFKDGKPAAIKPAVSVELR 108
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 25.9 bits (57), Expect = 6.3
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRD 67
I+ +LA R + A K K+ + + +K EK+ ++ +
Sbjct: 12 IESILALNPRTQ---SHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLG 68
Query: 68 DVAAKIESD 76
+ A E+
Sbjct: 69 ERGALREAM 77
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 25.7 bits (57), Expect = 6.9
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 33 LKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAK-IESDTKLKI 81
LK A D + ++ EK+ E M + + +E L+I
Sbjct: 39 LKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRI 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 8.0
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 6/24 (25%)
Query: 72 KIESDTKLKIDE------MNKAVE 89
K+++ KL D+ + +E
Sbjct: 24 KLQASLKLYADDSAPALAIKATME 47
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 25.5 bits (56), Expect = 8.5
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 108 PELHKNFRAANQTQGIQQ--LLAA 129
PEL F A+Q QG QQ L A
Sbjct: 37 PELKNVFNMAHQEQGQQQQALARA 60
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
3fgc_B*
Length = 324
Score = 25.1 bits (55), Expect = 9.6
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 35 QAKEEAQEDIEKY-------RQEREKIFREYEAKFMGSRDDVAAKIE 74
A+ EA+ +E++ +K+ +G+ ++
Sbjct: 238 AARAEARVYLEEFVRESYSNTDFEQKMGELLSENAIGTYEESTQAAR 284
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB:
3qo7_A* 3qo8_A* 3qo5_A
Length = 485
Score = 25.3 bits (56), Expect = 9.9
Identities = 7/56 (12%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARR---------LKQAKEEAQEDIEKYRQEREKI 54
+ +++A K + + + + +AKE+A++ I + + +
Sbjct: 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEK 87
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural
genomics, NPPSFA, nationa on protein structural and
functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 25.2 bits (56), Expect = 9.9
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 8 IQQLLAAEKRAAEKVAEAKKRKARR---------LKQAKEEAQEDIEKYRQEREKI 54
+ ++L +KR E + + ++ R LK+ ++ E + ++ +E+I
Sbjct: 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEI 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.123 0.308
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,064,324
Number of extensions: 125117
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 222
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.0 bits)