RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2196
         (142 letters)



>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 28.5 bits (62), Expect = 0.28
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 33  LKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNK 92
           L   K +  E           +        +G    VAA+I     L ID    +   + 
Sbjct: 276 LHNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYAALGIDSFVLSGYPHL 335

Query: 93  ENVIR---KVLDLVYDIKPEL 110
           E   R    +  L+    PE+
Sbjct: 336 EEAYRVGELLFPLLDVAIPEI 356


>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 471

 Score = 26.3 bits (56), Expect = 1.7
 Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 17/58 (29%)

Query: 8   IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQED-----------IEKYRQEREKI 54
           ++ L+  E+       +  + K + LK+A     +D             K++  ++++
Sbjct: 418 VKGLMEGEE------GKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKEL 469


>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio
           harveyi [TaxId: 669]}
          Length = 320

 Score = 26.1 bits (56), Expect = 2.0
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 34  KQAKEEAQEDIEKYRQE-------REKIFREYEAKFMGSRDDVAAKIESDTKLK-IDEMN 85
           + A+ EA+  +E++ +E        +K+        +G+ ++         +     ++ 
Sbjct: 237 EAARAEARVYLEEFVRESYSNTDFEQKMGELLSENAIGTYEESTQAARVAIECCGAADLL 296

Query: 86  KAVENNK-ENVIRKVLDLV 103
            + E+ + +   R V+D+V
Sbjct: 297 MSFESMEDKAQQRAVIDVV 315


>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
           {Clostridium sticklandii [TaxId: 1511]}
          Length = 516

 Score = 25.9 bits (57), Expect = 2.1
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 6   QGIQQLLAAEKRAAEKVAEAKKRKARR-LKQAKEEAQEDIEKYRQEREKIFREY 58
           Q I Q ++A +    K+      + +       +E  E I+  R  RE  F EY
Sbjct: 92  QEIAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRESRFEEY 145


>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
           {Bacillus subtilis [TaxId: 1423]}
          Length = 154

 Score = 25.0 bits (55), Expect = 3.0
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 33  LKQAKEEAQEDIEKYRQEREKIF 55
           L+ AK   +  + + ++E  K+F
Sbjct: 131 LEGAKRLMRFWLSQDKEELLKVF 153


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 24.8 bits (53), Expect = 5.2
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 9   QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDI-EKY---RQEREKIFREYEAK 61
           ++     ++A E++ EA K+     KQ   +    + E+     +E+ +I++E E+K
Sbjct: 309 EEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK 365


>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
           islandicum [TaxId: 2277]}
          Length = 242

 Score = 24.0 bits (51), Expect = 8.3
 Identities = 8/53 (15%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 90  NNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKRAAEKVAEAKK 142
            ++E   +++ +++ +    + + ++   + +G     AA   A E++  A K
Sbjct: 188 WDEEETRKRLENIMVNN---VERVYKRWQREKGWTMRDAAIVTALERIYNAMK 237


>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
           dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 361

 Score = 24.1 bits (51), Expect = 9.5
 Identities = 8/73 (10%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 41  QEDIEKYRQERE--KIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRK 98
           +E+I++ R + +   + ++       +  +   +I+ + + +I++  +    + E  + +
Sbjct: 275 REEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEE 334

Query: 99  VLDLVYDIKPELH 111
           +   +Y   P   
Sbjct: 335 LGYHIYSSDPPFE 347


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.123    0.308 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 464,840
Number of extensions: 21550
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 97
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.5 bits)