BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2197
         (394 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JOZ|A Chain A, Solution Nmr Structure Of Protein Yxef, Northeast
           Structural Genomics Consortium Target Sr500a
          Length = 135

 Score = 35.4 bits (80), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 23/109 (21%)

Query: 191 GKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV----IARKPITKKHDHTEQVKMEDAP 246
           G+ P P D V S+ +  T D V E  ++   G+V    +A K I++  D + +++     
Sbjct: 24  GRAPGPTDGVKSATVTFTEDEVVETEVMEGRGEVQLPFMAYKVISQSTDGSIEIQ----- 78

Query: 247 KSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQN----SMARIKSTAG 291
                       +  L   LK G   N ++IW QN    +M RI+S  G
Sbjct: 79  --------YLGPYYPLKSTLKRGE--NGTLIWEQNGQRKTMTRIESKTG 117


>pdb|1I04|A Chain A, Crystal Structure Of Mouse Major Urinary Protein-I From
           Mouse Liver
 pdb|1I05|A Chain A, Crystal Structure Of Mouse Major Urinary Protein (Mup-I)
           Complexed With Hydroxy-Methyl-Heptanone
 pdb|1I06|A Chain A, Crystal Structure Of Mouse Major Urinary Protein (Mup-I)
           Complexed With Sec-Butyl-Thiazoline
          Length = 180

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 92  CLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHV 142
           C+HA E  S+    N+EK+     ++ + S  +     NGN+ + ++  HV
Sbjct: 15  CVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHV 65


>pdb|1MUP|A Chain A, Pheromone Binding To Two Rodent Urinary Proteins Revealed
           By X-Ray Crystallography
          Length = 166

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 92  CLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHV 142
           C+HA E  S+    N+EK+     ++ + S  +     NGN+ + ++  HV
Sbjct: 1   CVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHV 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,851,150
Number of Sequences: 62578
Number of extensions: 353680
Number of successful extensions: 1069
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 6
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)