Query psy2197
Match_columns 394
No_of_seqs 194 out of 308
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:42:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11945 WASH_WAHD: WAHD domai 100.0 7.2E-70 1.6E-74 532.3 18.9 231 42-277 1-239 (297)
2 KOG1772|consensus 99.9 2.9E-25 6.2E-30 187.8 10.3 76 315-390 1-78 (108)
3 TIGR01147 V_ATP_synt_G vacuola 99.9 4.3E-24 9.4E-29 183.8 10.7 76 315-390 1-78 (113)
4 PF03179 V-ATPase_G: Vacuolar 99.7 4.3E-17 9.3E-22 137.2 6.6 74 317-390 1-76 (105)
5 PRK01005 V-type ATP synthase s 96.2 0.037 8E-07 52.8 9.8 53 324-376 21-73 (207)
6 COG2811 NtpF Archaeal/vacuolar 94.8 0.27 5.8E-06 42.8 9.2 58 317-374 4-61 (108)
7 PF12072 DUF3552: Domain of un 93.6 0.42 9.1E-06 45.0 8.9 57 320-376 24-80 (201)
8 PRK09173 F0F1 ATP synthase sub 92.8 0.74 1.6E-05 41.3 8.9 51 321-371 59-109 (159)
9 PRK00106 hypothetical protein; 92.6 0.51 1.1E-05 51.0 8.8 51 321-371 33-83 (535)
10 PRK07352 F0F1 ATP synthase sub 91.9 1.1 2.3E-05 41.0 8.9 52 321-372 76-127 (174)
11 TIGR02926 AhaH ATP synthase ar 91.6 1.4 3E-05 36.0 8.3 46 325-370 4-49 (85)
12 PRK06568 F0F1 ATP synthase sub 91.5 1.4 3.1E-05 40.4 9.2 48 323-370 63-110 (154)
13 PRK14471 F0F1 ATP synthase sub 91.4 1.4 3E-05 39.8 8.9 50 323-372 67-120 (164)
14 KOG1830|consensus 91.2 0.49 1.1E-05 49.8 6.5 70 59-128 32-120 (518)
15 PRK06231 F0F1 ATP synthase sub 91.0 1.8 3.9E-05 41.1 9.7 53 321-373 105-161 (205)
16 PRK14473 F0F1 ATP synthase sub 90.6 2.3 5.1E-05 38.3 9.7 52 322-373 66-121 (164)
17 PRK14472 F0F1 ATP synthase sub 90.6 1.7 3.8E-05 39.7 8.9 51 321-371 75-129 (175)
18 PRK01558 V-type ATP synthase s 90.4 1.4 3E-05 41.5 8.3 40 327-366 19-58 (198)
19 PRK13454 F0F1 ATP synthase sub 90.3 1.9 4.1E-05 40.0 8.9 50 324-373 91-140 (181)
20 PRK13453 F0F1 ATP synthase sub 90.1 2.1 4.4E-05 39.3 8.9 56 320-375 74-133 (173)
21 PRK14475 F0F1 ATP synthase sub 90.0 2.1 4.6E-05 39.0 8.9 47 323-369 69-115 (167)
22 PF01991 vATP-synt_E: ATP synt 89.9 1.8 4E-05 39.3 8.4 46 327-372 5-50 (198)
23 TIGR03321 alt_F1F0_F0_B altern 89.8 1.9 4.1E-05 41.7 8.9 52 322-373 63-118 (246)
24 PF06188 HrpE: HrpE/YscL/FliH 89.8 2 4.3E-05 40.4 8.8 50 324-373 24-73 (191)
25 PRK14474 F0F1 ATP synthase sub 89.8 1.9 4.1E-05 42.1 8.9 56 320-375 61-120 (250)
26 TIGR01144 ATP_synt_b ATP synth 89.8 2.5 5.4E-05 37.2 8.9 40 322-361 53-92 (147)
27 PRK02292 V-type ATP synthase s 89.7 1.8 3.8E-05 39.9 8.2 49 327-375 13-61 (188)
28 PRK13461 F0F1 ATP synthase sub 89.6 2.5 5.3E-05 38.0 8.9 49 322-370 63-115 (159)
29 PRK08475 F0F1 ATP synthase sub 89.5 3 6.6E-05 38.2 9.5 19 323-341 81-99 (167)
30 CHL00118 atpG ATP synthase CF0 89.2 2.7 5.9E-05 37.8 8.9 53 320-372 78-134 (156)
31 PRK13460 F0F1 ATP synthase sub 89.2 2.7 5.8E-05 38.5 8.9 47 324-370 76-126 (173)
32 PRK13455 F0F1 ATP synthase sub 88.5 3 6.6E-05 38.4 8.9 22 324-345 87-108 (184)
33 PRK08404 V-type ATP synthase s 88.4 4 8.6E-05 34.9 8.9 48 324-371 18-69 (103)
34 CHL00019 atpF ATP synthase CF0 88.1 3.4 7.3E-05 38.2 8.9 47 323-369 83-133 (184)
35 PRK09174 F0F1 ATP synthase sub 87.7 3.4 7.3E-05 39.3 8.9 38 323-360 112-149 (204)
36 PRK12704 phosphodiesterase; Pr 87.5 2.6 5.7E-05 45.4 8.9 52 323-374 31-82 (520)
37 PRK01194 V-type ATP synthase s 87.2 3.5 7.5E-05 38.5 8.5 49 327-375 13-61 (185)
38 TIGR02926 AhaH ATP synthase ar 87.1 6.1 0.00013 32.2 8.9 45 319-363 9-53 (85)
39 TIGR03319 YmdA_YtgF conserved 86.5 3.1 6.8E-05 44.7 8.8 53 323-375 25-77 (514)
40 PRK05759 F0F1 ATP synthase sub 86.5 5.1 0.00011 35.5 8.9 47 323-369 63-113 (156)
41 PRK08404 V-type ATP synthase s 86.3 6.7 0.00015 33.5 9.1 53 321-373 4-56 (103)
42 PRK07353 F0F1 ATP synthase sub 85.8 6.2 0.00014 34.4 8.9 48 324-371 65-116 (140)
43 PRK03963 V-type ATP synthase s 85.7 3.1 6.8E-05 38.4 7.4 39 326-364 13-51 (198)
44 PRK13428 F0F1 ATP synthase sub 85.1 4.4 9.5E-05 42.8 8.9 45 323-367 60-104 (445)
45 COG0711 AtpF F0F1-type ATP syn 85.0 6.5 0.00014 35.9 8.9 45 329-373 60-104 (161)
46 COG0711 AtpF F0F1-type ATP syn 84.2 9.7 0.00021 34.7 9.7 51 322-372 64-118 (161)
47 PRK01005 V-type ATP synthase s 84.0 4.9 0.00011 38.5 7.9 43 320-362 28-70 (207)
48 PRK08476 F0F1 ATP synthase sub 83.9 8.9 0.00019 34.2 9.1 20 347-366 94-113 (141)
49 PF00430 ATP-synt_B: ATP synth 83.8 5.7 0.00012 33.8 7.6 43 330-372 54-96 (132)
50 cd03404 Band_7_HflK Band_7_Hfl 82.7 8 0.00017 37.2 9.0 56 318-373 178-233 (266)
51 PRK00106 hypothetical protein; 81.3 6.5 0.00014 42.7 8.5 50 323-372 46-95 (535)
52 TIGR01933 hflK HflK protein. H 78.7 12 0.00027 35.8 8.8 50 319-368 152-201 (261)
53 PF00430 ATP-synt_B: ATP synth 78.3 12 0.00025 31.9 7.6 38 323-360 58-95 (132)
54 PRK01558 V-type ATP synthase s 76.8 13 0.00027 35.1 8.0 32 324-355 27-58 (198)
55 CHL00118 atpG ATP synthase CF0 75.8 21 0.00046 32.1 8.9 81 288-373 40-120 (156)
56 PRK15354 type III secretion sy 74.9 13 0.00028 36.2 7.5 50 323-372 45-94 (224)
57 PRK05759 F0F1 ATP synthase sub 74.6 32 0.0007 30.4 9.7 45 330-374 59-103 (156)
58 PRK06568 F0F1 ATP synthase sub 73.8 25 0.00054 32.4 8.9 46 330-375 59-104 (154)
59 PRK14471 F0F1 ATP synthase sub 72.8 42 0.00091 30.2 10.1 50 320-369 42-91 (164)
60 PRK03963 V-type ATP synthase s 72.1 20 0.00044 33.1 8.0 42 329-370 5-46 (198)
61 PF04380 BMFP: Membrane fusoge 71.8 5.4 0.00012 32.6 3.7 42 65-106 38-79 (79)
62 PRK07353 F0F1 ATP synthase sub 71.3 34 0.00074 29.7 8.9 44 330-373 60-103 (140)
63 PRK08475 F0F1 ATP synthase sub 71.3 32 0.00068 31.5 9.0 44 329-372 76-119 (167)
64 PRK13454 F0F1 ATP synthase sub 69.8 33 0.00072 31.8 8.9 43 330-372 86-128 (181)
65 PRK06231 F0F1 ATP synthase sub 69.4 23 0.00049 33.7 7.9 20 285-304 63-82 (205)
66 PRK13428 F0F1 ATP synthase sub 69.2 32 0.00068 36.4 9.6 40 333-372 59-98 (445)
67 PRK14473 F0F1 ATP synthase sub 69.1 40 0.00087 30.3 9.1 54 319-372 41-94 (164)
68 CHL00019 atpF ATP synthase CF0 68.9 36 0.00077 31.4 8.9 42 330-371 79-120 (184)
69 TIGR03825 FliH_bacil flagellar 68.4 21 0.00046 34.7 7.6 39 325-363 46-87 (255)
70 COG2811 NtpF Archaeal/vacuolar 68.4 48 0.001 29.1 8.9 51 325-375 34-88 (108)
71 PRK13455 F0F1 ATP synthase sub 67.8 39 0.00084 31.1 8.9 39 333-371 85-123 (184)
72 cd03407 Band_7_4 A subgroup of 67.7 18 0.0004 35.0 7.1 50 314-363 141-190 (262)
73 PRK12705 hypothetical protein; 67.4 25 0.00053 38.2 8.5 46 331-376 34-79 (508)
74 COG1390 NtpE Archaeal/vacuolar 67.1 30 0.00065 32.8 8.2 48 327-374 14-61 (194)
75 KOG4025|consensus 66.9 40 0.00088 32.0 8.7 71 58-130 123-197 (207)
76 PRK09174 F0F1 ATP synthase sub 66.2 41 0.00089 32.0 8.9 43 330-372 108-150 (204)
77 TIGR01933 hflK HflK protein. H 66.1 21 0.00046 34.2 7.1 38 323-360 167-204 (261)
78 PRK13460 F0F1 ATP synthase sub 65.8 33 0.0007 31.4 7.9 42 331-372 72-113 (173)
79 PRK02292 V-type ATP synthase s 65.6 46 0.00099 30.6 8.9 42 325-366 22-63 (188)
80 TIGR03319 YmdA_YtgF conserved 65.6 24 0.00053 38.1 8.1 49 328-376 19-67 (514)
81 PRK13461 F0F1 ATP synthase sub 65.6 53 0.0012 29.4 9.2 55 318-372 37-91 (159)
82 PRK10930 FtsH protease regulat 65.4 14 0.00031 38.9 6.2 37 322-358 251-287 (419)
83 PRK07352 F0F1 ATP synthase sub 65.3 48 0.001 30.3 8.9 41 332-372 76-116 (174)
84 TIGR01144 ATP_synt_b ATP synth 65.3 25 0.00055 30.8 6.9 40 331-370 51-90 (147)
85 PF14712 Snapin_Pallidin: Snap 64.8 41 0.0009 27.3 7.6 52 60-111 36-91 (92)
86 COG2960 Uncharacterized protei 64.5 35 0.00075 29.7 7.2 48 61-108 42-90 (103)
87 PF01468 GA: GA module; Inter 63.9 20 0.00043 27.6 5.2 50 336-385 1-56 (60)
88 PRK14475 F0F1 ATP synthase sub 63.3 59 0.0013 29.6 9.1 37 333-369 68-104 (167)
89 PRK13453 F0F1 ATP synthase sub 63.2 59 0.0013 29.8 9.1 28 345-372 77-104 (173)
90 cd03404 Band_7_HflK Band_7_Hfl 61.7 37 0.0008 32.6 7.9 55 321-376 192-246 (266)
91 PRK14472 F0F1 ATP synthase sub 61.7 61 0.0013 29.6 8.9 40 332-371 75-114 (175)
92 PF06188 HrpE: HrpE/YscL/FliH 59.9 24 0.00052 33.2 6.0 41 319-359 30-70 (191)
93 PRK06669 fliH flagellar assemb 59.1 36 0.00079 33.4 7.4 43 318-360 76-118 (281)
94 PF01765 RRF: Ribosome recycli 58.8 87 0.0019 28.6 9.4 63 284-351 63-125 (165)
95 PF05597 Phasin: Poly(hydroxya 58.2 30 0.00066 31.1 6.1 52 63-114 80-132 (132)
96 TIGR02499 HrpE_YscL_not type I 58.1 71 0.0015 28.2 8.5 25 331-355 14-38 (166)
97 PRK01194 V-type ATP synthase s 57.4 35 0.00076 31.8 6.7 42 325-366 22-63 (185)
98 PF14942 Muted: Organelle biog 56.3 78 0.0017 28.9 8.5 56 319-376 79-134 (145)
99 PF11172 DUF2959: Protein of u 55.5 70 0.0015 30.9 8.3 55 56-110 36-97 (201)
100 PF01991 vATP-synt_E: ATP synt 54.9 1E+02 0.0022 27.8 9.2 43 325-367 14-56 (198)
101 PRK09173 F0F1 ATP synthase sub 53.5 1E+02 0.0022 27.5 8.9 38 334-371 61-98 (159)
102 PRK06669 fliH flagellar assemb 53.5 1E+02 0.0022 30.3 9.5 50 323-372 70-119 (281)
103 PRK14474 F0F1 ATP synthase sub 53.0 89 0.0019 30.6 8.9 42 331-372 61-102 (250)
104 PF10241 KxDL: Uncharacterized 52.9 63 0.0014 26.7 6.8 45 68-112 34-78 (88)
105 PF05739 SNARE: SNARE domain; 52.0 97 0.0021 23.1 7.4 47 59-109 4-50 (63)
106 TIGR03321 alt_F1F0_F0_B altern 51.9 1E+02 0.0022 29.8 9.2 39 332-370 62-100 (246)
107 PRK00083 frr ribosome recyclin 51.3 1.7E+02 0.0037 27.5 10.2 13 284-296 81-93 (185)
108 TIGR03825 FliH_bacil flagellar 51.3 63 0.0014 31.4 7.6 50 324-373 34-90 (255)
109 PF07889 DUF1664: Protein of u 49.7 1.1E+02 0.0024 27.4 8.2 54 59-112 43-96 (126)
110 PRK09098 type III secretion sy 49.5 59 0.0013 31.6 7.0 38 332-369 41-78 (233)
111 PF03179 V-ATPase_G: Vacuolar 48.9 88 0.0019 26.2 7.2 52 321-372 27-78 (105)
112 PF13747 DUF4164: Domain of un 47.6 1.1E+02 0.0024 25.6 7.5 54 58-112 7-67 (89)
113 PHA02675 ORF104 fusion protein 46.7 1.6E+02 0.0035 24.9 8.1 57 55-111 29-85 (90)
114 PRK09098 type III secretion sy 45.8 52 0.0011 32.0 6.0 34 323-356 43-76 (233)
115 PRK06569 F0F1 ATP synthase sub 45.6 1.5E+02 0.0033 27.4 8.7 47 327-373 62-108 (155)
116 cd03403 Band_7_stomatin_like B 45.4 1.2E+02 0.0026 27.9 8.1 60 316-375 144-204 (215)
117 TIGR00496 frr ribosome recycli 43.7 2.7E+02 0.0059 26.0 10.2 14 283-296 71-84 (176)
118 TIGR02132 phaR_Bmeg polyhydrox 43.4 1.1E+02 0.0023 29.4 7.4 51 61-111 81-134 (189)
119 PF10152 DUF2360: Predicted co 42.5 83 0.0018 28.5 6.5 45 64-112 5-49 (148)
120 cd00520 RRF Ribosome recycling 42.4 2.8E+02 0.0061 25.8 10.1 14 284-297 77-90 (179)
121 TIGR02499 HrpE_YscL_not type I 41.2 1.8E+02 0.0039 25.6 8.4 48 323-370 17-72 (166)
122 PRK10930 FtsH protease regulat 40.6 1.5E+02 0.0032 31.5 8.8 38 323-360 263-300 (419)
123 TIGR01837 PHA_granule_1 poly(h 40.4 98 0.0021 27.0 6.4 24 89-112 94-117 (118)
124 PRK12704 phosphodiesterase; Pr 38.8 1.2E+02 0.0027 32.9 8.1 31 328-358 47-77 (520)
125 PF04977 DivIC: Septum formati 38.1 48 0.001 25.7 3.7 44 80-123 20-63 (80)
126 TIGR01932 hflC HflC protein. H 34.6 1.6E+02 0.0036 29.5 7.8 43 327-373 231-273 (317)
127 PF04102 SlyX: SlyX; InterPro 34.4 2.1E+02 0.0046 22.6 6.9 42 66-111 11-52 (69)
128 cd03405 Band_7_HflC Band_7_Hfl 33.0 1.6E+02 0.0036 27.6 7.1 15 346-360 193-207 (242)
129 PRK14127 cell division protein 32.5 1.4E+02 0.0031 26.1 6.0 45 69-114 30-74 (109)
130 PF11471 Sugarporin_N: Maltopo 32.5 99 0.0021 24.2 4.6 31 81-111 29-59 (60)
131 KOG0163|consensus 31.6 1.8E+02 0.004 33.7 8.0 38 42-88 404-442 (1259)
132 PRK06937 type III secretion sy 31.5 3E+02 0.0064 25.8 8.5 23 323-345 34-56 (204)
133 PF05103 DivIVA: DivIVA protei 30.9 16 0.00035 31.1 0.0 35 321-355 76-110 (131)
134 cd00193 t_SNARE Soluble NSF (N 30.7 2E+02 0.0044 20.5 7.9 42 68-109 11-52 (60)
135 PRK06569 F0F1 ATP synthase sub 30.0 1.4E+02 0.0031 27.6 6.0 59 314-372 38-96 (155)
136 PF13874 Nup54: Nucleoporin co 29.5 2.8E+02 0.0061 24.6 7.7 38 79-116 67-104 (141)
137 cd03401 Band_7_prohibitin Band 29.5 1E+02 0.0022 27.9 4.9 15 346-360 174-188 (196)
138 KOG4571|consensus 29.4 1.9E+02 0.004 29.6 7.1 40 329-368 249-288 (294)
139 PF00517 GP41: Retroviral enve 29.1 3E+02 0.0065 26.2 8.2 47 62-108 17-63 (204)
140 PRK10428 hypothetical protein; 28.4 1.2E+02 0.0026 24.3 4.6 37 324-364 28-64 (69)
141 TIGR01069 mutS2 MutS2 family p 28.4 3.7E+02 0.008 30.7 10.0 41 68-108 235-278 (771)
142 COG1390 NtpE Archaeal/vacuolar 28.4 2.3E+02 0.005 26.9 7.3 36 327-362 3-38 (194)
143 cd03405 Band_7_HflC Band_7_Hfl 28.1 1.8E+02 0.004 27.2 6.6 16 317-332 153-168 (242)
144 PF06635 NolV: Nodulation prot 27.6 2.8E+02 0.0061 27.0 7.6 69 305-373 15-99 (207)
145 PRK15322 invasion protein OrgB 27.4 1.2E+02 0.0026 29.6 5.1 15 327-341 20-34 (210)
146 PF05531 NPV_P10: Nucleopolyhe 27.3 2.7E+02 0.0059 23.0 6.4 44 69-113 21-64 (75)
147 PF06005 DUF904: Protein of un 26.6 2.2E+02 0.0048 23.0 5.8 36 76-111 3-38 (72)
148 PHA02414 hypothetical protein 26.4 1.9E+02 0.0041 25.3 5.6 40 76-115 42-81 (111)
149 PF05739 SNARE: SNARE domain; 26.4 2.7E+02 0.0059 20.6 7.9 45 61-105 16-60 (63)
150 TIGR01843 type_I_hlyD type I s 26.2 3.4E+02 0.0074 27.1 8.5 39 85-123 240-278 (423)
151 cd02681 MIT_calpain7_1 MIT: do 26.1 2.6E+02 0.0056 22.8 6.2 45 56-100 21-71 (76)
152 PF12072 DUF3552: Domain of un 25.8 4.2E+02 0.0092 24.9 8.5 43 323-365 38-80 (201)
153 cd02678 MIT_VPS4 MIT: domain c 25.6 3.1E+02 0.0067 21.6 6.5 45 56-100 21-70 (75)
154 PF10393 Matrilin_ccoil: Trime 25.6 1.7E+02 0.0038 22.0 4.6 23 85-107 24-46 (47)
155 cd03401 Band_7_prohibitin Band 25.2 2.1E+02 0.0046 25.9 6.2 37 319-355 155-194 (196)
156 PRK00409 recombination and DNA 25.0 3.1E+02 0.0067 31.4 8.6 43 66-108 238-283 (782)
157 PF00261 Tropomyosin: Tropomyo 24.8 4.6E+02 0.01 25.2 8.7 54 58-111 147-203 (237)
158 PRK15322 invasion protein OrgB 24.6 2.6E+02 0.0057 27.3 6.8 32 325-356 7-38 (210)
159 PF11875 DUF3395: Domain of un 24.0 3.8E+02 0.0083 24.3 7.6 45 330-374 5-49 (151)
160 PF12699 phiKZ_IP: phiKZ-like 23.3 3.1E+02 0.0066 28.1 7.5 55 67-126 69-123 (339)
161 KOG4691|consensus 23.2 6E+02 0.013 24.9 8.9 30 359-388 154-187 (227)
162 PF13805 Pil1: Eisosome compon 22.1 5.2E+02 0.011 26.2 8.6 54 59-112 96-159 (271)
163 PF13747 DUF4164: Domain of un 22.0 4E+02 0.0086 22.2 6.7 46 64-110 6-51 (89)
164 cd00632 Prefoldin_beta Prefold 22.0 4.1E+02 0.009 22.2 6.9 37 75-111 61-97 (105)
165 PF04048 Sec8_exocyst: Sec8 ex 21.9 5.2E+02 0.011 22.9 7.9 30 78-107 73-102 (142)
166 PRK03947 prefoldin subunit alp 21.6 3.9E+02 0.0085 23.3 7.0 43 65-111 93-135 (140)
167 PF05531 NPV_P10: Nucleopolyhe 21.0 1.6E+02 0.0034 24.4 3.9 17 96-112 40-56 (75)
168 cd07630 BAR_SNX_like The Bin/A 20.7 5.9E+02 0.013 24.2 8.4 31 346-376 147-177 (198)
169 PF06295 DUF1043: Protein of u 20.6 2E+02 0.0042 25.4 4.8 29 343-371 26-54 (128)
170 PF09325 Vps5: Vps5 C terminal 20.4 5.8E+02 0.013 23.6 8.3 53 320-376 163-215 (236)
171 PRK00888 ftsB cell division pr 20.3 2.4E+02 0.0051 24.2 5.2 34 79-112 29-62 (105)
No 1
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=100.00 E-value=7.2e-70 Score=532.35 Aligned_cols=231 Identities=33% Similarity=0.511 Sum_probs=212.4
Q ss_pred cceeEEEeeeCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEee
Q psy2197 42 KITNIEIALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVS 121 (394)
Q Consensus 42 ~~~~Y~VplI~~DLr~EEtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gskKAItVfS 121 (394)
++|+|+||||++||||||||+||+++|++|++|++|||+||++||+++|+||++|++||++|||||++|+||+|||||||
T Consensus 1 ~~q~Y~vplI~~dLr~eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs 80 (297)
T PF11945_consen 1 EMQVYSVPLIPPDLRREETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAITVFS 80 (297)
T ss_pred CCceeEecccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccEEEeC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-CCcccccccccCCC-CccCccccccccc--ccccccccccceeeeeccccccccchhhhcccCCCCCCCC
Q psy2197 122 KSKYPYPYN-GNYSVHIQHEHVTP-MYKCPLLLYDKTE--INTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPI 197 (394)
Q Consensus 122 sAKYPa~~~-~~y~~sIF~~~~~~-~~~~~~~~i~~k~--~d~~~lqekl~Fy~Vk~~~~~~~~~~~~~~eGLG~LP~~I 197 (394)
|||||+++. ++|+ |||++..++ ...+.++++..++ .+++.++||++|||||.....+....+..++|||+||++|
T Consensus 81 ~akyP~~~~~~~y~-siF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ekl~f~~v~~~~~~~~~~~~~~~eGLG~lP~~i 159 (297)
T PF11945_consen 81 PAKYPAPDRLQDYS-SIFTGATDPIPQKRKRYKIRSKHRPIDEKALQEKLQFFHVKVNEKSERILVDQAEEGLGSLPRNI 159 (297)
T ss_pred cccCCCcccccccc-ccccCcCcccccccccccccccCCCccchhhhhhcceeEecccccccCcccccccccccCCCCCC
Confidence 999999999 9999 999985553 3345566666654 6789999999999999988665533478899999999999
Q ss_pred CCcchhhhccCCcccchhhhccCCccccccCccccccc---ccccccccCCCchh-hhcccccccCCCeeeeeCCCCccc
Q psy2197 198 DSVMSSILFNTSDNVYEKYIIVHPGQVIARKPITKKHD---HTEQVKMEDAPKSL-ISKGILRTDFSKLAVVLKLGAKTN 273 (394)
Q Consensus 198 ~SVsSLLLFNT~ENpYkkY~~lDP~q~ll~g~~~k~r~---~e~e~~L~dAP~SI-~re~l~r~~~~~y~YvP~lg~Vpn 273 (394)
+||||||||||+||||+||+++|| |+|++++++. .+++++|++||+|| +|++++++.+++|||+|+||+||+
T Consensus 160 ~SVssLLLFNT~eNpYkky~~lDp----l~g~~~kt~~~~~~~~~~~l~~AP~SI~~~~~l~~~~~~~y~Y~P~lg~vPe 235 (297)
T PF11945_consen 160 SSVSSLLLFNTNENPYKKYVFLDP----LRGAVTKTRKELEGEKEEKLADAPSSISKRDQLERQPADDYFYVPDLGEVPE 235 (297)
T ss_pred cchhHHHHhcCCcchhhcccccCc----cccccccccccccccccccccCCChhhhcccccccccCCceeecCCcccccc
Confidence 999999999999999999999999 9999998875 34689999999999 899999999999999999999999
Q ss_pred cchh
Q psy2197 274 KSII 277 (394)
Q Consensus 274 ~s~~ 277 (394)
++++
T Consensus 236 iDvP 239 (297)
T PF11945_consen 236 IDVP 239 (297)
T ss_pred CCCC
Confidence 9998
No 2
>KOG1772|consensus
Probab=99.92 E-value=2.9e-25 Score=187.76 Aligned_cols=76 Identities=55% Similarity=0.698 Sum_probs=72.9
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhhc
Q psy2197 315 PPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAAN 390 (394)
Q Consensus 315 ~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t~ 390 (394)
|+|+++||||||+|||+|++||++||++|.+||||||+||++||++||.++|+||+.+++.+ +.|+++.++|++|.
T Consensus 1 M~Sq~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~ 78 (108)
T KOG1772|consen 1 MASQSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETD 78 (108)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999 77999999999985
No 3
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=99.91 E-value=4.3e-24 Score=183.79 Aligned_cols=76 Identities=57% Similarity=0.718 Sum_probs=70.3
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhhc
Q psy2197 315 PPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAAN 390 (394)
Q Consensus 315 ~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t~ 390 (394)
|+||++|||+||+||++|++||++||++|++||||||+||++||++||+++|+||++|++++ +.+....+++++|+
T Consensus 1 M~sq~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~ 78 (113)
T TIGR01147 1 MASQTQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQ 78 (113)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34557799999999999999999999999999999999999999999999999999999999 44778899999885
No 4
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=99.68 E-value=4.3e-17 Score=137.15 Aligned_cols=74 Identities=46% Similarity=0.561 Sum_probs=60.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhhc
Q psy2197 317 VVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAAN 390 (394)
Q Consensus 317 ~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t~ 390 (394)
|+|+|||+||+||++|.+||.+||+.|.+|||+||+||+.||+.||.++|++|+.++..+ +.+....+++++|.
T Consensus 1 ~~~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~ 76 (105)
T PF03179_consen 1 SQSDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETE 76 (105)
T ss_dssp -----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999998888 45788888888774
No 5
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=96.18 E-value=0.037 Score=52.79 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
.|-+|+++|.+|+.+|++...+-+.+|+.||++.+++.+.+-|.+.++.++..
T Consensus 21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a 73 (207)
T PRK01005 21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESAL 73 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999988877654
No 6
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=94.76 E-value=0.27 Score=42.85 Aligned_cols=58 Identities=34% Similarity=0.370 Sum_probs=51.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 317 VVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 374 (394)
Q Consensus 317 ~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~ 374 (394)
..+.-|-.+-.||..|.+.|.+|+..+-+++++|+.+|...|++.-..-++.++++..
T Consensus 4 ~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~ 61 (108)
T COG2811 4 DDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILE 61 (108)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999988888887777743
No 7
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.61 E-value=0.42 Score=44.98 Aligned_cols=57 Identities=32% Similarity=0.402 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
.+=..|..|+++|..|+.+|+..=....++|..+|+.|+..+|.+-|.||+....+.
T Consensus 24 ~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 24 INRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999888888999999999999999999999999886654
No 8
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=92.83 E-value=0.74 Score=41.35 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
-=.+|-.|+++|++|+.+|+..-.+.+.+|+.+|+++++.....-+.+...
T Consensus 59 ~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ 109 (159)
T PRK09173 59 YQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQ 109 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999988899999999999988866655444443
No 9
>PRK00106 hypothetical protein; Provisional
Probab=92.60 E-value=0.51 Score=51.05 Aligned_cols=51 Identities=24% Similarity=0.190 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
.=-+||.|+++|.+|+.+|++.-.+-+++|+.+|+.++.+++.+-|+|+.+
T Consensus 33 ~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~ 83 (535)
T PRK00106 33 AELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARK 83 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777766544444555555544444444444444433
No 10
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=91.92 E-value=1.1 Score=41.02 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
-=++|-+|+++|++|+.+|+..-.+...++.++|++|++..+.+.+.+....
T Consensus 76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e 127 (174)
T PRK07352 76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAE 127 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999888887777666666666666666666555555443
No 11
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=91.61 E-value=1.4 Score=36.03 Aligned_cols=46 Identities=33% Similarity=0.460 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 325 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 325 LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
+=.||.++..++.+|+......|.+|+.+|...+++-..+-+.+-+
T Consensus 4 ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~ 49 (85)
T TIGR02926 4 IKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGE 49 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554444444333
No 12
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=91.54 E-value=1.4 Score=40.36 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
.+|-+|+++|++|+.+|+....+-..+|+++|..|++..+.+-.++..
T Consensus 63 ~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie 110 (154)
T PRK06568 63 AQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ 110 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888887777777777777777766665444333
No 13
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=91.41 E-value=1.4 Score=39.85 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQ----AKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKq----Ak~eA~~EI~~yr~~kE~ef~~~ 372 (394)
+.|-.|+++|++|+.+|+....+...+ |+.+|++.+++-+.+=|.|.++.
T Consensus 67 ~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a 120 (164)
T PRK14471 67 RLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAA 120 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888766655544 44444444444444444444333
No 14
>KOG1830|consensus
Probab=91.25 E-value=0.49 Score=49.82 Aligned_cols=70 Identities=17% Similarity=0.333 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------ccCceE--------EE
Q psy2197 59 DTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK-----------NIQKSV--------TI 119 (394)
Q Consensus 59 EtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~-----------gskKAI--------tV 119 (394)
-|+.-||.-|.-|-+-++|||+-|-+-+...-.|...|++||.++.-||.+|- +++||. +|
T Consensus 32 ~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkSStvqDQqi 111 (518)
T KOG1830|consen 32 ITLANIIRQLSSLSKHAEDIFGELFNDANNFNHRANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKSSTVQDQQI 111 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhhhhhhhhhh
Confidence 37889999999999999999999999999999999999999999999999985 366775 37
Q ss_pred eeCCCCCCC
Q psy2197 120 VSKSKYPYP 128 (394)
Q Consensus 120 fSsAKYPa~ 128 (394)
|+.+-.|.+
T Consensus 112 fdR~tlP~p 120 (518)
T KOG1830|consen 112 FDRNTLPTP 120 (518)
T ss_pred hccccCCch
Confidence 888877764
No 15
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=91.03 E-value=1.8 Score=41.08 Aligned_cols=53 Identities=30% Similarity=0.170 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
.=.+|-+|+.+|++|+.+|+..-. .-+++|+.+|++.+++-+.+-|.|-++..
T Consensus 105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~ 161 (205)
T PRK06231 105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELK 161 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877544 55777777777777777777776666653
No 16
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=90.64 E-value=2.3 Score=38.34 Aligned_cols=52 Identities=31% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 322 IQQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 322 Iq~LL~AEkeA~~iV~~Ar~~----k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
=+.|-+|.++|+.|+.+|+.. +..-+.+|+.||++.++.-+.+=+.|-++..
T Consensus 66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~ 121 (164)
T PRK14473 66 EAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRML 121 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888887763 3345666666666666666655555544443
No 17
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=90.61 E-value=1.7 Score=39.70 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
-=++|-.|+++|++|+.+|+..-.+- +.+|++||++-++.-+.+-+.|.++
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~ 129 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRR 129 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888887755544 4444444444444444444444333
No 18
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=90.39 E-value=1.4 Score=41.46 Aligned_cols=40 Identities=35% Similarity=0.362 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 366 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE 366 (394)
+|+.+|..|+++|++.-.+=+.+|+.+|++.++.-+.+-+
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999888899999999988877554444
No 19
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=90.30 E-value=1.9 Score=40.05 Aligned_cols=50 Identities=28% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
.|-.|.++|++|+.+|++.-.+...+++.+|+.|++...++-+++.....
T Consensus 91 ~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k 140 (181)
T PRK13454 91 ALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIR 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35557777777777777766666666666666666666666555555443
No 20
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=90.09 E-value=2.1 Score=39.34 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~ 375 (394)
.-=++|-+|+++|++|+.+|+..-. .-+.+|+++|++.+++-+.+-|.|.++...+
T Consensus 74 e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~ 133 (173)
T PRK13453 74 ENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIAD 133 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999998887554 4566666666666666666666665555433
No 21
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=90.02 E-value=2.1 Score=38.95 Aligned_cols=47 Identities=30% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 369 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef 369 (394)
++|-.|+.+|++|+.+|+....+...++.++|++|.+....+-+.+-
T Consensus 69 ~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 115 (167)
T PRK14475 69 AEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777666655555555555555555444444433
No 22
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=89.90 E-value=1.8 Score=39.26 Aligned_cols=46 Identities=33% Similarity=0.445 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
+|+.+|.+|+.+|++.-.+-+.+|+.+|+.+++.+....+++.+..
T Consensus 5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (198)
T PF01991_consen 5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQE 50 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999988888777766666544
No 23
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=89.83 E-value=1.9 Score=41.72 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 322 IQQLLAAEKRAAEKVAEAKK----RKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 322 Iq~LL~AEkeA~~iV~~Ar~----~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
=++|-+|+++|++|+.+|++ .+..-+.+|+.||++.++.-+.+-|.|-++..
T Consensus 63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~ 118 (246)
T TIGR03321 63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALS 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999996665 45566888888888888877777777766654
No 24
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=89.79 E-value=2 Score=40.37 Aligned_cols=50 Identities=30% Similarity=0.406 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
..|++.++|.+|+++||..-.+=|.+|+++|+.-++.-+.+-+++|....
T Consensus 24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a 73 (191)
T PF06188_consen 24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQA 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988888999999999999876667777776554
No 25
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=89.77 E-value=1.9 Score=42.15 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~----k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~ 375 (394)
..-++|-.|+++|++|+.+|++. |.+-+.+|++||++.++..+.+-|.|-++...+
T Consensus 61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~ 120 (250)
T PRK14474 61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKA 120 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999988874 445577888888888877777766666655443
No 26
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=89.77 E-value=2.5 Score=37.20 Aligned_cols=40 Identities=38% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKY 361 (394)
Q Consensus 322 Iq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~y 361 (394)
=+.|-+|..+|++|+.+|+..-.+...++..+|+.|++..
T Consensus 53 ~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~ 92 (147)
T TIGR01144 53 QVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKI 92 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888887777755544444444444443333
No 27
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=89.69 E-value=1.8 Score=39.87 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~ 375 (394)
+|+++|.+|..+|++....-+.+|+.+|++..+++..+-+++.......
T Consensus 13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r 61 (188)
T PRK02292 13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999888888888776543
No 28
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=89.64 E-value=2.5 Score=38.00 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 322 IQQLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 322 Iq~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
=++|-+|+++|+.|+.+|+..-.+. +.+|+.||++.+++-+.+-+.|-.
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~ 115 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE 115 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889888877754443 555555555555554444444333
No 29
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=89.46 E-value=3 Score=38.16 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKK 341 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~ 341 (394)
++|-+|+++|.+|+.+|++
T Consensus 81 ~~L~~Ar~eA~~Ii~~A~~ 99 (167)
T PRK08475 81 KKLEEAKEKAELIVETAKK 99 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554
No 30
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.24 E-value=2.7 Score=37.83 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKRKAR----RLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~----rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
..=+.|-+|.++|++|+++|+..-.+ .+.+|++||++.+++.+.+-+.|-++-
T Consensus 78 e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a 134 (156)
T CHL00118 78 QYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKA 134 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777778888888777765443 345555555555555554444444433
No 31
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=89.18 E-value=2.7 Score=38.48 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
+|-+|+++|++|+.+|+..-.+. +.+|+.+|++.++.-+.+-|.|-+
T Consensus 76 ~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~ 126 (173)
T PRK13460 76 RLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKG 126 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777654444 344444444444444433333333
No 32
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=88.54 E-value=3 Score=38.41 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKAR 345 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~ 345 (394)
+|-.|+++|++|+.+|++.-.+
T Consensus 87 ~L~~A~~ea~~Ii~~A~~~a~~ 108 (184)
T PRK13455 87 KQREVQEQADRIVAAAKDEAQA 108 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665554443
No 33
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=88.40 E-value=4 Score=34.89 Aligned_cols=48 Identities=31% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
.|-.|..+|+.|+.+|+..-. .-+.+|+.+|..-++..+.+-|.|-..
T Consensus 18 ~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~ 69 (103)
T PRK08404 18 RIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKK 69 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554332 225555555555555555544444433
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=88.10 E-value=3.4 Score=38.17 Aligned_cols=47 Identities=21% Similarity=0.088 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARR----LKQAKEEAQEDIEKYRQEREKIF 369 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~r----LKqAk~eA~~EI~~yr~~kE~ef 369 (394)
.+|-.|+++|++|+.+|++.-.+. +.+|+.+|++.+++.+.+-|.|-
T Consensus 83 ~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek 133 (184)
T CHL00019 83 ARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQ 133 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777654443 44444444444444444433333
No 35
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=87.72 E-value=3.4 Score=39.32 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~ 360 (394)
++|-+|.++|++|+.+||+.-.+...+++.+|+.|++.
T Consensus 112 ~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~ 149 (204)
T PRK09174 112 QELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777766665444433333333333333
No 36
>PRK12704 phosphodiesterase; Provisional
Probab=87.49 E-value=2.6 Score=45.41 Aligned_cols=52 Identities=38% Similarity=0.394 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 374 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~ 374 (394)
+.+-+|+++|..|+.+|+..--...++++.+|+.|+.++|.+-|++|+..+.
T Consensus 31 ~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~ 82 (520)
T PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN 82 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999999999988766778999999999999999998888755443
No 37
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=87.21 E-value=3.5 Score=38.50 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~ 375 (394)
+|+.+|..|+.+|++.-.+=++.|+.+|++..+.|..+.+++-......
T Consensus 13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~r 61 (185)
T PRK01194 13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKS 61 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999988888777665433
No 38
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=87.14 E-value=6.1 Score=32.24 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQ 363 (394)
Q Consensus 319 s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~ 363 (394)
...-..|-.|..+|.+|+.+|+....+-..+|..+|..|.+....
T Consensus 9 ~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~ 53 (85)
T TIGR02926 9 EDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIK 53 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999998877766666666555544433
No 39
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.52 E-value=3.1 Score=44.74 Aligned_cols=53 Identities=34% Similarity=0.380 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~ 375 (394)
+.+-.|+++|..+..+|...-....++++.+|+.|+..+|.+-|++|+..+.+
T Consensus 25 ~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r 77 (514)
T TIGR03319 25 KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE 77 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999988876667779999999999999999988887555433
No 40
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=86.47 E-value=5.1 Score=35.50 Aligned_cols=47 Identities=30% Similarity=0.196 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKK----RKARRLKQAKEEAQEDIEKYRQEREKIF 369 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~----~k~~rLKqAk~eA~~EI~~yr~~kE~ef 369 (394)
++|-+|+++|.+|+.+|+. .+.+.+.+|+.||+.-++.-+.+-+.+.
T Consensus 63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~ 113 (156)
T PRK05759 63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER 113 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666554 3334455555555555554444444443
No 41
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=86.35 E-value=6.7 Score=33.50 Aligned_cols=53 Identities=28% Similarity=0.375 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
-|-+.-+||.++.+++.+||.....-|.+|+.+|+++.++-..+-..+-....
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~il 56 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLI 56 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677789999999999999999999999999999998887777666666554
No 42
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=85.82 E-value=6.2 Score=34.40 Aligned_cols=48 Identities=38% Similarity=0.391 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
+|-+|.++|.+|+.+|+..-. ..+.+|++||++.++.-+.+-+.|-++
T Consensus 65 ~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~ 116 (140)
T PRK07353 65 QLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQA 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666555333 334444444444444444444444333
No 43
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=85.72 E-value=3.1 Score=38.38 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 326 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE 364 (394)
Q Consensus 326 L~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~ 364 (394)
=+|+++|.+|+++|++.-.+-+.+|+.+|+.|.+.+...
T Consensus 13 ~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~ 51 (198)
T PRK03963 13 REAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRK 51 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999998888888888888766655443
No 44
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=85.11 E-value=4.4 Score=42.76 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ 367 (394)
+.|-+|.++|++|+.+|++.-.+...++.++|+.|++..+.+-++
T Consensus 60 ~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~ 104 (445)
T PRK13428 60 KAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGAR 104 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777888888888887765555444444444444444433333
No 45
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=85.00 E-value=6.5 Score=35.87 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 329 EkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
..++...+.+||.....-+.+|+.+|+.+.++.+.+-|++..+..
T Consensus 60 ~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~ 104 (161)
T COG0711 60 LAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIK 104 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555565555555666666666666666666666665543
No 46
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=84.15 E-value=9.7 Score=34.71 Aligned_cols=51 Identities=29% Similarity=0.297 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy2197 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIE----KYRQEREKIFREY 372 (394)
Q Consensus 322 Iq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~----~yr~~kE~ef~~~ 372 (394)
=++|-+|..+|++||+.|++.-.+-..+++.+|+.|.+ ....+-+.+.++.
T Consensus 64 ~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a 118 (161)
T COG0711 64 EQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERA 118 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999988766555555555555544 4444444444443
No 47
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=83.99 E-value=4.9 Score=38.48 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYR 362 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr 362 (394)
..=.-|-+|+++|..|+.+|++...+.+.+|+.+|+.|.....
T Consensus 28 eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~ 70 (207)
T PRK01005 28 EAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGE 70 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999988889999999888866433
No 48
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=83.90 E-value=8.9 Score=34.17 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2197 347 LKQAKEEAQEDIEKYRQERE 366 (394)
Q Consensus 347 LKqAk~eA~~EI~~yr~~kE 366 (394)
+.+|+.+++.+++..+.+-+
T Consensus 94 ~~~A~~~~~~~~~~a~~~l~ 113 (141)
T PRK08476 94 IEAKKAELESKYEAFAKQLA 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 49
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=83.82 E-value=5.7 Score=33.77 Aligned_cols=43 Identities=33% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
.++.+++.+||....+-+++|+.+|+++.++...+-+++-...
T Consensus 54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~ 96 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERI 96 (132)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666666655555555555444
No 50
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=82.74 E-value=8 Score=37.18 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 318 VSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 318 ~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
....|..-+.||+++.....+|..++.+.+.+|+.||++-+..-.+.++..--+-+
T Consensus 178 i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 178 VQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 45568889999999999999998888888889998888877776666665544443
No 51
>PRK00106 hypothetical protein; Provisional
Probab=81.26 E-value=6.5 Score=42.73 Aligned_cols=50 Identities=30% Similarity=0.288 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
+-+-+|+++|.+|+.+|+..--...++++.+|++|+..+|.+-|++|++.
T Consensus 46 ~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eE 95 (535)
T PRK00106 46 NLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSE 95 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457999999999999887667789999999999999999988887433
No 52
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=78.74 E-value=12 Score=35.84 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI 368 (394)
Q Consensus 319 s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~e 368 (394)
..-|..-+.|++++...+.+|..++.+.+..|+.||++.+.+=.+.+++.
T Consensus 152 ~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~ 201 (261)
T TIGR01933 152 KEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERR 201 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888888888888888888878888877776655544444443
No 53
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=78.31 E-value=12 Score=31.87 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~ 360 (394)
..|-.|+.+|.+|+.+|+..-.+-..++..+|+++++.
T Consensus 58 ~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~ 95 (132)
T PF00430_consen 58 EKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAER 95 (132)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777766554333333333333333333
No 54
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=76.82 E-value=13 Score=35.06 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ 355 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~ 355 (394)
-|-+|+++|.+||.+|++.-.+-++.|+.||+
T Consensus 27 Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 27 IILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999886666666555555
No 55
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=75.80 E-value=21 Score=32.10 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=43.4
Q ss_pred hhcccccccchhhcccccccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 288 STAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367 (394)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ 367 (394)
..+.|.|-.+.--.|+.+..-.- ..-...=++.-....++.+++.+||.....-+.+|+.+|+++.++-..+-++
T Consensus 40 ~k~l~~Pi~~~l~~R~~~I~~~l-----~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ 114 (156)
T CHL00118 40 NIILYKPLLKVLDERKEYIRKNL-----TKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQK 114 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667775555555554431100 0001111222333355566666777777777777777777777666666666
Q ss_pred HHHHHH
Q psy2197 368 IFREYE 373 (394)
Q Consensus 368 ef~~~~ 373 (394)
|-.+..
T Consensus 115 ea~~~~ 120 (156)
T CHL00118 115 YIDSLL 120 (156)
T ss_pred HHHHHH
Confidence 655553
No 56
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=74.93 E-value=13 Score=36.21 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
-.|=+|-+.|.+||..|-..+..-|.||..+|++=+.+-+.+.|.+.-+-
T Consensus 45 ~il~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~~~~~~~E~~~L~q 94 (224)
T PRK15354 45 AIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQ 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999987543
No 57
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=74.62 E-value=32 Score=30.41 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 374 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~ 374 (394)
.++..++.+|+....+-+.+|+.+|+++.++...+-+++-+....
T Consensus 59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~ 103 (156)
T PRK05759 59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888888888887777777666543
No 58
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=73.75 E-value=25 Score=32.36 Aligned_cols=46 Identities=9% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~ 375 (394)
.+......+||....+-+++|+++|++.+++-+.+-+.+-++..+.
T Consensus 59 ~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~ 104 (154)
T PRK06568 59 EQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSD 104 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888888888777777776665443
No 59
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=72.84 E-value=42 Score=30.22 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 369 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef 369 (394)
..|..-|+.=+++.+-..+.+..-.++|.+|+.+|+.-|++.+.+.++..
T Consensus 42 ~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~ 91 (164)
T PRK14471 42 DSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMI 91 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333333333333333444455444444444444444443
No 60
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=72.08 E-value=20 Score=33.06 Aligned_cols=42 Identities=26% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 329 EkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
++-..+|.++|++...+-|.+|+.+|++.+++.+.+-+.+-+
T Consensus 5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~ 46 (198)
T PRK03963 5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAE 46 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666655555554433
No 61
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=71.81 E-value=5.4 Score=32.55 Aligned_cols=42 Identities=36% Similarity=0.425 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 65 ANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCAN 106 (394)
Q Consensus 65 ~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaK 106 (394)
-..|..||=|+.+=|+-..+.+.+.|++|+.|..||..+++|
T Consensus 38 ~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 38 QSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345888999999999999999999999999999999877653
No 62
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=71.32 E-value=34 Score=29.75 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
.++.+.+.+||.....-+.+|+.+|+++.+....+-+++-.+..
T Consensus 60 ~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~ 103 (140)
T PRK07353 60 AQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASK 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666665555555543
No 63
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=71.28 E-value=32 Score=31.54 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 329 EkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
..++.+++.+||+...+-+.+|+.+|+++.++.-.+-.++-...
T Consensus 76 ~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~ 119 (167)
T PRK08475 76 KEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENL 119 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666555544444444433
No 64
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=69.84 E-value=33 Score=31.81 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
.+...++.+||....+.+..|+.+|+++.++-+.+-++|-.+.
T Consensus 86 ~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~ 128 (181)
T PRK13454 86 KAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAK 128 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555565555555555555554444444
No 65
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.38 E-value=23 Score=33.66 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=11.6
Q ss_pred HHhhhcccccccchhhcccc
Q psy2197 285 RIKSTAGWNRTRSLALTRQT 304 (394)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ 304 (394)
.+-..++|.|-...--.|+.
T Consensus 63 ~lL~k~l~kPi~~~L~~R~~ 82 (205)
T PRK06231 63 LLGIFLFWKPTQRFLNKRKE 82 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556677776655444443
No 66
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=69.16 E-value=32 Score=36.44 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 333 AEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 333 ~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
.+++.+||.....-+.+|+.+|+++.++-..+-++|-.+.
T Consensus 59 e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i 98 (445)
T PRK13428 59 TKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERI 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554444
No 67
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=69.08 E-value=40 Score=30.34 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 319 s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
...|..-|+.=.++..-..+.+..-.++|.+|+.+|..-|++.+.+-+++....
T Consensus 41 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~ 94 (164)
T PRK14473 41 TRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEI 94 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333333333333344455555555555555555444444433
No 68
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=68.92 E-value=36 Score=31.43 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
.++.+++.+||+....-+++|+.+|+++.+....+-.++-..
T Consensus 79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~ 120 (184)
T CHL00019 79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLER 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666655555444444443
No 69
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=68.39 E-value=21 Score=34.68 Aligned_cols=39 Identities=28% Similarity=0.289 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy2197 325 LLAAEKRAAEKVAEAKKRKARRLKQA---KEEAQEDIEKYRQ 363 (394)
Q Consensus 325 LL~AEkeA~~iV~~Ar~~k~~rLKqA---k~eA~~EI~~yr~ 363 (394)
|=.|+.+|+.||.+|+..-.+-+.+| ..+|+.|.+..+.
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e 87 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQ 87 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999988766554444 3444444444443
No 70
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=68.37 E-value=48 Score=29.10 Aligned_cols=51 Identities=33% Similarity=0.348 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 325 LLAAEKRAAEKVAEA----KKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375 (394)
Q Consensus 325 LL~AEkeA~~iV~~A----r~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~ 375 (394)
+.+|..+|.+|+.+| ++....-|+.|+++|..|-+..+.+-+++-....+.
T Consensus 34 i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 34 IKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444432 233334455566666666666665555555555443
No 71
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=67.79 E-value=39 Score=31.12 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 333 AEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 333 ~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
.+.+.+||.....-+.+|+.+|+.+.++.+.+-+.+-..
T Consensus 85 e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~ 123 (184)
T PRK13455 85 ERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIAR 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666655555555444333
No 72
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=67.73 E-value=18 Score=34.98 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=41.3
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 314 RPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQ 363 (394)
Q Consensus 314 ~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~ 363 (394)
.+.....-|..-..||+++...+.+|..+|...+..|+.+|++.+.+=+.
T Consensus 141 ~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg 190 (262)
T cd03407 141 PDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVG 190 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34456778889999999999999999999999999999888888776433
No 73
>PRK12705 hypothetical protein; Provisional
Probab=67.44 E-value=25 Score=38.19 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 331 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 331 eA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
+|.+|+.+|++.-....|+|..+|+.|+..+|.+.|+|++....+.
T Consensus 34 ~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 34 EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888887766666688888898999999998888887765443
No 74
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=67.06 E-value=30 Score=32.83 Aligned_cols=48 Identities=31% Similarity=0.344 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 374 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~ 374 (394)
+||.+|..|..+|+..-.+...+|+.+|+.-++.+....+++-.....
T Consensus 14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~ 61 (194)
T COG1390 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQ 61 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988889999999999999888888877766543
No 75
>KOG4025|consensus
Probab=66.93 E-value=40 Score=31.99 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeeCCCCCCCCC
Q psy2197 58 NDTIIQIANSLDILDESMRNVFDHTK----KSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYPYPYN 130 (394)
Q Consensus 58 EEtI~qi~daL~~Ld~vsndVF~rIs----~RV~~nr~rLq~I~~RI~~aqaKIekL~gskKAItVfSsAKYPa~~~ 130 (394)
-|||.-|+.|+-.|-.++|.||..|- ..|+.-+........|-+.--+ ...+.-++-|+|.||..||..-.
T Consensus 123 LeTIK~IASaIKkLLd~vN~v~~~~p~t~~~AvE~rKkEFVkYSK~FS~TLK--tYFKdGk~~~~~~~~~~~~~~~n 197 (207)
T KOG4025|consen 123 LETIKLIASAIKKLLDAVNAVYRIVPLTAQPAVEKRKKEFVKYSKRFSNTLK--TYFKDGKKCIRVRQPTGFPNDND 197 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCceeEEeccccCCCcCc
Confidence 38999999999999999999998763 3377777777788888776543 34667888999999999997533
No 76
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=66.20 E-value=41 Score=32.03 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
.+..+.+.+||..-..-+.+|+.+|+++.+.-+.+-+++-.+.
T Consensus 108 ~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~ 150 (204)
T PRK09174 108 AAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKK 150 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556665556666666666665555555555444443
No 77
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=66.09 E-value=21 Score=34.21 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~ 360 (394)
+...+||.+|+.++.+|+....+.+-+|+.+|+..+..
T Consensus 167 ~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~ 204 (261)
T TIGR01933 167 RYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINR 204 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777666666666555555444
No 78
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=65.76 E-value=33 Score=31.38 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 331 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 331 eA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
++.+.+.+|+.....-+.+|+.+|+++.++...+-+++-.+.
T Consensus 72 e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~ 113 (173)
T PRK13460 72 DYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQ 113 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666667777777666666666555555544
No 79
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=65.61 E-value=46 Score=30.56 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 325 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 366 (394)
Q Consensus 325 LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE 366 (394)
|=+|+++|.+|+.+|++.=.+-..++..+|++|.+.++....
T Consensus 22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~ 63 (188)
T PRK02292 22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQEL 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999887666677888888888877755433
No 80
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=65.58 E-value=24 Score=38.09 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 328 AEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 328 AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
+++.|.+++.+|++.-.+-+++|+.+|+.++.+++.+-|+|+++..++.
T Consensus 19 ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~El 67 (514)
T TIGR03319 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL 67 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888777766666778888888888888888888887776555
No 81
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=65.56 E-value=53 Score=29.40 Aligned_cols=55 Identities=27% Similarity=0.442 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 318 VSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 318 ~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
....|..-|+.=.++..-..+.+..-.++|.+|+.||..-|++.+.+-+++.+..
T Consensus 37 R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i 91 (159)
T PRK13461 37 RQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEI 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544433333333333333344455555555555555555555554444
No 82
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=65.35 E-value=14 Score=38.92 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDI 358 (394)
Q Consensus 322 Iq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI 358 (394)
+..-+.|+++-+..+.+|..++.+-+-.|+-||++-|
T Consensus 251 f~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii 287 (419)
T PRK10930 251 FDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRIL 287 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444334444444444444444444433333
No 83
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=65.33 E-value=48 Score=30.27 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 332 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 332 A~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
+...+.+||+....-+.+|+.+|+++.+....+-+++-...
T Consensus 76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~ 116 (174)
T PRK07352 76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARL 116 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444444443
No 84
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=65.27 E-value=25 Score=30.84 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 331 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 331 eA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
++..++.+||..-..-+.+|+.+|+++.+....+-+++-.
T Consensus 51 e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~ 90 (147)
T TIGR01144 51 KAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREERE 90 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454444445555555555555544444444433
No 85
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=64.82 E-value=41 Score=27.32 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 60 TIIQIANSLDILDES--MRNVFD--HTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 60 tI~qi~daL~~Ld~v--sndVF~--rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
+|.+....|..+..+ ..+.|+ .-..++...+.++..|++|+..++.++.+|+
T Consensus 36 ~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 36 QIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555442 223443 2456677778888888888888888877765
No 86
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.45 E-value=35 Score=29.72 Aligned_cols=48 Identities=29% Similarity=0.351 Sum_probs=42.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 61 IIQIAN-SLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIE 108 (394)
Q Consensus 61 I~qi~d-aL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIe 108 (394)
+.++++ .|..||=|+..=|+-..+=+-+-|++|+.|..||..++||+.
T Consensus 42 ~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 42 FRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444 499999999999999999999999999999999999999987
No 87
>PF01468 GA: GA module; InterPro: IPR002988 Protein G-related albumin-binding (GA) modules occur on the surface of numerous Gram-positive bacterial pathogens. Protein G of group C and G Streptococci interacts with the constant region of IgG and with human serum albumin. The GA module is composed of a left-handed three-helix bundle and is found in a range of bacterial cell surface proteins [, ]. GA modules may promote bacterial growth and virulence in mammalian hosts by scavenging albumin-bound nutrients and camouflaging the bacteria. Variations in sequence give rise to differences in structure and function between GA modules in different proteins, which could alter pathogenesis and host specificity due to their varied affinities for different species of albumin []. Proteins containing a GA module include PAB from Peptostreptococcus magnus [].; GO: 0009405 pathogenesis; PDB: 2DGJ_B 1GJS_A 1GJT_A 2FS1_A 1GAB_A 2J5Y_B 1PRB_A 1TF0_B 2VDB_B 1XVH_B ....
Probab=63.92 E-value=20 Score=27.61 Aligned_cols=50 Identities=18% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccchHHHHH
Q psy2197 336 VAEAKKR--KARRLKQAKEEAQEDIEKYR----QEREKIFREYEAKVSHCNIVLII 385 (394)
Q Consensus 336 V~~Ar~~--k~~rLKqAk~eA~~EI~~yr----~~kE~ef~~~~~~~s~~~~~~e~ 385 (394)
|..|+.. -.++|.+||.+|..+|..+- .+|+..-.......+...+..-+
T Consensus 1 v~~ak~~Lng~~~L~~aK~~A~~~I~~L~~Ln~~Qk~~~~~~I~~A~t~~~V~~i~ 56 (60)
T PF01468_consen 1 VNQAKNALNGDQKLANAKQNAKQEINQLTNLNDAQKQALKNQINNATTRAEVNQIV 56 (60)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3445443 56899999999999999887 45544333333322334444333
No 88
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=63.26 E-value=59 Score=29.55 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 333 AEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 369 (394)
Q Consensus 333 ~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef 369 (394)
...+.+||.....-+.+|+.+|++++++-+.+-++|-
T Consensus 68 e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea 104 (167)
T PRK14475 68 KAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQI 104 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333
No 89
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=63.16 E-value=59 Score=29.79 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 345 RRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 345 ~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
++|.+|+.+|..-+++.+.+-+++....
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~ 104 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQQQEQI 104 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444443
No 90
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=61.67 E-value=37 Score=32.60 Aligned_cols=55 Identities=25% Similarity=0.261 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
--+...+||.+|..++.+|+....+...+|+.+++.++..=..+.++ |..+-...
T Consensus 192 ~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~-~~~~~~a~ 246 (266)
T cd03404 192 RERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAAR-FESLLAEY 246 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH
Confidence 45566677888888888888887777777777777777665444444 44443333
No 91
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=61.67 E-value=61 Score=29.59 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 332 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 332 A~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
+...+.+||+....-+.+|+.+|+++.++-..+-+++-.+
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~ 114 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKK 114 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444444444433
No 92
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=59.86 E-value=24 Score=33.21 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIE 359 (394)
Q Consensus 319 s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~ 359 (394)
..+=.-|=+|..+|.+|+.+|+.....-+++|.++|.+++-
T Consensus 30 ~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~ 70 (191)
T PF06188_consen 30 QQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFW 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567899999999999999888888878887766654
No 93
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=59.10 E-value=36 Score=33.37 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 318 VSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360 (394)
Q Consensus 318 ~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~ 360 (394)
+..-+..|++|..+|..|+.+||..-.+.+.+|+.+++...++
T Consensus 76 ~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~ 118 (281)
T PRK06669 76 EEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEE 118 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888887777777777666655443
No 94
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=58.84 E-value=87 Score=28.56 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=31.3
Q ss_pred HHHhhhcccccccchhhcccccccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 284 ARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAK 351 (394)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk 351 (394)
+..+|-+|+||+.-- ..-|+-+ ||...-...+-+..+=+.-.+|..-|..+|..-.++||..+
T Consensus 63 AI~~s~l~l~p~~d~---~~i~v~i--P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~ 125 (165)
T PF01765_consen 63 AIQKSNLNLNPQNDG---NTIRVPI--PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLK 125 (165)
T ss_dssp HHHHTTSSSEEEEET---TEEEEE----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCcccCC---cEEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445688999998532 2234444 44444444444444444444455555555554444444443
No 95
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=58.15 E-value=30 Score=31.06 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy2197 63 QIANSLDILDESMRNVFDHTKKSIW-RTRQCLHAIEKRSSVVCANIEKLKNIQ 114 (394)
Q Consensus 63 qi~daL~~Ld~vsndVF~rIs~RV~-~nr~rLq~I~~RI~~aqaKIekL~gsk 114 (394)
++...++.|++++++=..++-+|+. -++..|+.|..||..+.++|++|.+.+
T Consensus 80 ~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 80 RATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455555555444444444432 257889999999999999999998643
No 96
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=58.09 E-value=71 Score=28.20 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 331 RAAEKVAEAKKRKARRLKQAKEEAQ 355 (394)
Q Consensus 331 eA~~iV~~Ar~~k~~rLKqAk~eA~ 355 (394)
+|.+|+++||..-.+-+.+|+++++
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e 38 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAE 38 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 97
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=57.43 E-value=35 Score=31.84 Aligned_cols=42 Identities=10% Similarity=0.049 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 325 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 366 (394)
Q Consensus 325 LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE 366 (394)
|=+|+++|.+|+.+|++.=.+-...+...|++|++..+.+-.
T Consensus 22 ~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~rii 63 (185)
T PRK01194 22 NDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSII 63 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999887666666667777777766655443
No 98
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=56.25 E-value=78 Score=28.89 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 319 s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
..+|+.|++-|.+++. +......-+..++.+++-.+|+..=++.-+.||++.+...
T Consensus 79 ~~~~~~l~~~e~~~~~--~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l 134 (145)
T PF14942_consen 79 NSMCSRLQQKEQEKQK--DDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERL 134 (145)
T ss_pred HHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999887 5555555566888999999999999999999999887654
No 99
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=55.46 E-value=70 Score=30.92 Aligned_cols=55 Identities=9% Similarity=0.175 Sum_probs=47.2
Q ss_pred CchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 56 KHNDTIIQIANSLDILDESM-------RNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKL 110 (394)
Q Consensus 56 r~EEtI~qi~daL~~Ld~vs-------ndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL 110 (394)
..+|+-.|...+|+.|..++ .+.|+++....+..+.+...+..||..++..=+.|
T Consensus 36 sq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~AL 97 (201)
T PF11172_consen 36 SQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADAL 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999885 68999999999999999999999998877655544
No 100
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=54.90 E-value=1e+02 Score=27.81 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 325 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367 (394)
Q Consensus 325 LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ 367 (394)
+-+|+++|..++.+|.+.-..++....+.|+++++..+.....
T Consensus 14 ~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 56 (198)
T PF01991_consen 14 IAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREIS 56 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888888888887776666666666666666655554443
No 101
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=53.55 E-value=1e+02 Score=27.54 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 334 EKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 334 ~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
..+.+||..-..-+.+|+.+|+..+++-+.+-+++-.+
T Consensus 61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~ 98 (159)
T PRK09173 61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVAR 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555444444444444433
No 102
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=53.54 E-value=1e+02 Score=30.33 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
+..-.++.+|.+++.+|+..-..=|-.|+.+|++.+++++.+.|+.++.-
T Consensus 70 ~~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a 119 (281)
T PRK06669 70 EIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEA 119 (281)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556688999999999999999999999999999999999888877754
No 103
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=53.03 E-value=89 Score=30.60 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 331 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 331 eA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
++.+.+.+|++.+..-+.+|+.+|+++.+....+-.+|-...
T Consensus 61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~ 102 (250)
T PRK14474 61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATA 102 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666555544444444333
No 104
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=52.93 E-value=63 Score=26.75 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2197 68 LDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKN 112 (394)
Q Consensus 68 L~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~g 112 (394)
|.++...+..-|..+..+.++...-|..+...++-+..||..|++
T Consensus 34 L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~ 78 (88)
T PF10241_consen 34 LLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKA 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999888888888888888888888875
No 105
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=51.97 E-value=97 Score=23.06 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 59 DTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEK 109 (394)
Q Consensus 59 EtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIek 109 (394)
+.|..+...+..|..++ ..|..=|.....-|..|...+..+..+|.+
T Consensus 4 ~~l~~l~~~i~~l~~~~----~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 50 (63)
T PF05739_consen 4 EELDELEQSIQELKQMF----QDIGEEVEEQNEMLDRIEDNVDRANENLKK 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHCHhhHHHHHHHHHHHHHHHHH
Confidence 44555555555555444 455555555555555555555555555443
No 106
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=51.95 E-value=1e+02 Score=29.76 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 332 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 332 A~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
+...+.+|++....-+.+|+.+|+++.+....+-.+|-.
T Consensus 62 ~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~ 100 (246)
T TIGR03321 62 YEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEAD 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444433333
No 107
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=51.29 E-value=1.7e+02 Score=27.55 Aligned_cols=13 Identities=31% Similarity=0.228 Sum_probs=10.6
Q ss_pred HHHhhhccccccc
Q psy2197 284 ARIKSTAGWNRTR 296 (394)
Q Consensus 284 ~~~~~~~~~~~~~ 296 (394)
|...|-+|+||+.
T Consensus 81 AI~~s~lgl~P~~ 93 (185)
T PRK00083 81 AIRASDLGLNPSN 93 (185)
T ss_pred HHHHCCCCCCccc
Confidence 5567889999987
No 108
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=51.25 E-value=63 Score=31.40 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDI-------EKYRQEREKIFREYE 373 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI-------~~yr~~kE~ef~~~~ 373 (394)
++..+.++...++.+||..=..-+.+|+.+|+.-. +..+.++|+-+++-.
T Consensus 34 ~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~ 90 (255)
T TIGR03825 34 ELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAK 90 (255)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566678889999999988888999998888653 455555565555443
No 109
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.66 E-value=1.1e+02 Score=27.40 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2197 59 DTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKN 112 (394)
Q Consensus 59 EtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~g 112 (394)
.++..+...|+++-....+.=.++++||...-.+|+...+-+...+.+|..+++
T Consensus 43 ~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 43 DAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 345556666677666666666777777777777777766666666666665553
No 110
>PRK09098 type III secretion system protein HrpB; Validated
Probab=49.49 E-value=59 Score=31.61 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 332 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 369 (394)
Q Consensus 332 A~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef 369 (394)
..+++.+||+.-.+=|.+|+++|++=+++.+.+-|+.|
T Consensus 41 ~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~ 78 (233)
T PRK09098 41 RDAVLAAARARAERIVAEARAQAEAILEAARREADRSA 78 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444455555555555555444444433
No 111
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=48.89 E-value=88 Score=26.17 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
.-+.|-+|..+|...|...|..+-..++.-..++..+++.....-+++.+..
T Consensus 27 r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~ 78 (105)
T PF03179_consen 27 REQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEK 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 3344555666666666555555555555444444444444444444444444
No 112
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.64 E-value=1.1e+02 Score=25.55 Aligned_cols=54 Identities=9% Similarity=0.265 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Q psy2197 58 NDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIE-------KRSSVVCANIEKLKN 112 (394)
Q Consensus 58 EEtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~-------~RI~~aqaKIekL~g 112 (394)
++.+.++-.+|+.|+..++.=|++..++ .....+++.++ +++..+.++.++|.+
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 4566777788888888888888877776 33344444433 344445555554443
No 113
>PHA02675 ORF104 fusion protein; Provisional
Probab=46.66 E-value=1.6e+02 Score=24.94 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=48.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 55 LKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 55 Lr~EEtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.-.+|++.+=+-.|..+.+.+-+......+++.+.-.+++.|..=.-.+..||+-=.
T Consensus 29 ~~~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDVQT 85 (90)
T PHA02675 29 APSKESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKIDVQT 85 (90)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceec
Confidence 457899999999999999999899999999999999999999888888888886433
No 114
>PRK09098 type III secretion system protein HrpB; Validated
Probab=45.83 E-value=52 Score=31.99 Aligned_cols=34 Identities=38% Similarity=0.406 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE 356 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~ 356 (394)
.-|=+|.++|++||.+||..-.+=+.+|+.+++.
T Consensus 43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 43 AVLAAARARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688999999999998877777888887665
No 115
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=45.60 E-value=1.5e+02 Score=27.37 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
+++++..+.+.+||..-.+-..+|++.+..|.+.=|+..|++.+...
T Consensus 62 ~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~ 108 (155)
T PRK06569 62 KLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSI 108 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666665555566666666666666666676666553
No 116
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=45.36 E-value=1.2e+02 Score=27.92 Aligned_cols=60 Identities=23% Similarity=0.155 Sum_probs=43.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy2197 316 PVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDI-EKYRQEREKIFREYEAK 375 (394)
Q Consensus 316 a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI-~~yr~~kE~ef~~~~~~ 375 (394)
......|..-+.||+++...+.+|+..+......|..+++.++ ..+-+-++.|--+..++
T Consensus 144 ~~~~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~ 204 (215)
T cd03403 144 QEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK 204 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 3455678888999999999999999888888777777777665 45555555555444433
No 117
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=43.67 E-value=2.7e+02 Score=25.98 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=11.2
Q ss_pred HHHHhhhccccccc
Q psy2197 283 MARIKSTAGWNRTR 296 (394)
Q Consensus 283 ~~~~~~~~~~~~~~ 296 (394)
-|...|-+|+||+.
T Consensus 71 kAI~~s~lglnP~~ 84 (176)
T TIGR00496 71 KAIQRSDLGLNPNN 84 (176)
T ss_pred HHHHHCCCCCCccc
Confidence 35677899999985
No 118
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=43.45 E-value=1.1e+02 Score=29.38 Aligned_cols=51 Identities=12% Similarity=0.326 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Q psy2197 61 IIQIANSLDILDESMRNVFDHTKKSIWRT---RQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 61 I~qi~daL~~Ld~vsndVF~rIs~RV~~n---r~rLq~I~~RI~~aqaKIekL~ 111 (394)
++.+-.-+|.|+...+|+|+...+..+++ +..+..+..||..+..|+++|=
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445557888888999999999777665 4678889999999999999875
No 119
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=42.51 E-value=83 Score=28.48 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2197 64 IANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKN 112 (394)
Q Consensus 64 i~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~g 112 (394)
|+..-+.|++.+. .-..|+...-.+|+.|..++..+++|+..|-|
T Consensus 5 i~~tv~fLN~F~~----~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpg 49 (148)
T PF10152_consen 5 IVHTVQFLNRFAS----VCEEKLSDMEQRLQRLEATLNILEAKLSSIPG 49 (148)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444555555544 33455666777888999999999999988876
No 120
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=42.42 E-value=2.8e+02 Score=25.82 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=11.2
Q ss_pred HHHhhhcccccccc
Q psy2197 284 ARIKSTAGWNRTRS 297 (394)
Q Consensus 284 ~~~~~~~~~~~~~~ 297 (394)
|...|.+|.||+..
T Consensus 77 AI~~s~l~l~P~~d 90 (179)
T cd00520 77 AILNSDLGLNPNND 90 (179)
T ss_pred HHHHCCCCCCcCcC
Confidence 56678999999874
No 121
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=41.18 E-value=1.8e+02 Score=25.59 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKAR--------RLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~--------rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
+-|-+|..+|..|+.+|+..... =+.++..+|.+.+.....+.++-+.
T Consensus 17 ~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~~~~~~ 72 (166)
T TIGR02499 17 AILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEA 72 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999885433 2444555555555554444443333
No 122
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=40.60 E-value=1.5e+02 Score=31.49 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~ 360 (394)
+...+||..|++|+.+|+..+.+.+.+|+..+++.|..
T Consensus 263 ~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~ 300 (419)
T PRK10930 263 QYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILE 300 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888777777776666555554443
No 123
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=40.43 E-value=98 Score=26.99 Aligned_cols=24 Identities=17% Similarity=0.428 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy2197 89 TRQCLHAIEKRSSVVCANIEKLKN 112 (394)
Q Consensus 89 nr~rLq~I~~RI~~aqaKIekL~g 112 (394)
.++.++.|..||..+.++|++|.+
T Consensus 94 tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 94 SREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999999875
No 124
>PRK12704 phosphodiesterase; Provisional
Probab=38.82 E-value=1.2e+02 Score=32.89 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 328 AEKRAAEKVAEAKKRKARRLKQAKEEAQEDI 358 (394)
Q Consensus 328 AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI 358 (394)
|+.+|.++..+++..--+.+++.|.++++|+
T Consensus 47 A~~eAke~~ke~~leaeeE~~~~R~Ele~e~ 77 (520)
T PRK12704 47 AKKEAEAIKKEALLEAKEEIHKLRNEFEKEL 77 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334434433333333333444444444443
No 125
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.10 E-value=48 Score=25.65 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeeCC
Q psy2197 80 DHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKS 123 (394)
Q Consensus 80 ~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gskKAItVfSsA 123 (394)
..+.+.+.....+++.+..+....+..|+.|+++...|.=++..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 36777888899999999999999999999997665555444433
No 126
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=34.60 E-value=1.6e+02 Score=29.52 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~ 373 (394)
+||.+|+.|..+|+..+.+-+.+| +++-...|++=|++..+..
T Consensus 231 ege~~a~~i~a~A~~e~~~~~aeA----~a~a~~~~Aegea~a~~~~ 273 (317)
T TIGR01932 231 QGEEKAEEILGKAEYEVRKILSEA----YRTARIIKGEGDAEAAKIY 273 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHH
Confidence 344445555555555544433333 3333444455555554443
No 127
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=34.41 E-value=2.1e+02 Score=22.57 Aligned_cols=42 Identities=5% Similarity=0.244 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 66 NSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 66 daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
--|.+++.+++ .++.-|.+-..+|+.+..++..+..||..+.
T Consensus 11 ~~la~qe~~ie----~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 11 IKLAFQEDTIE----ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33555555544 6777778888888888888888888888876
No 128
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=33.00 E-value=1.6e+02 Score=27.56 Aligned_cols=15 Identities=7% Similarity=-0.039 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy2197 346 RLKQAKEEAQEDIEK 360 (394)
Q Consensus 346 rLKqAk~eA~~EI~~ 360 (394)
.+.+|+.+|++-|..
T Consensus 193 ~~~~Aea~a~a~~~~ 207 (242)
T cd03405 193 TVILAEAYREAQEIR 207 (242)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555444444
No 129
>PRK14127 cell division protein GpsB; Provisional
Probab=32.55 E-value=1.4e+02 Score=26.11 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy2197 69 DILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQ 114 (394)
Q Consensus 69 ~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gsk 114 (394)
++|+.|+. -|+.+...+.+.++++..+..++...++++.....+.
T Consensus 30 ~FLd~V~~-dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~ 74 (109)
T PRK14127 30 KFLDDVIK-DYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSS 74 (109)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 45666655 3566777777888888888888888888777655443
No 130
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.53 E-value=99 Score=24.24 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 81 HTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 81 rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.|++|++..-++|+....|...+++++.+.+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999999999999988754
No 131
>KOG0163|consensus
Probab=31.60 E-value=1.8e+02 Score=33.69 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=18.9
Q ss_pred cceeEEEeeeCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy2197 42 KITNIEIALIQDDLKHNDTIIQIANSLDILDE-SMRNVFDHTKKSIWR 88 (394)
Q Consensus 42 ~~~~Y~VplI~~DLr~EEtI~qi~daL~~Ld~-vsndVF~rIs~RV~~ 88 (394)
.+.++.|||-... .-.+=|-|-+ |-...|++|-.||++
T Consensus 404 kGTvIrVPLK~~e---------A~n~RDALaKaiYSkLFD~lV~~iNq 442 (1259)
T KOG0163|consen 404 KGTVIRVPLKIHE---------ASNARDALAKAIYSKLFDWLVGRINQ 442 (1259)
T ss_pred cceEEEeeccHHh---------hcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556777764332 2233333322 345566666666654
No 132
>PRK06937 type III secretion system protein; Reviewed
Probab=31.51 E-value=3e+02 Score=25.80 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKAR 345 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~ 345 (394)
+-|=+|..+|.+|+.+|++...+
T Consensus 34 ~il~~A~~~A~~i~~~A~~~~e~ 56 (204)
T PRK06937 34 ELVEAARQRAEEIEAEAQEVYEQ 56 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445668888888888875443
No 133
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.94 E-value=16 Score=31.14 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ 355 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~ 355 (394)
.-+..-.|+++|..|+.+|+..-..-+..|+.++.
T Consensus 76 a~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~ 110 (131)
T PF05103_consen 76 ADEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAE 110 (131)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666665554444444444433
No 134
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=30.66 E-value=2e+02 Score=20.51 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 68 LDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEK 109 (394)
Q Consensus 68 L~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIek 109 (394)
|+.--.-...+|..|..-|....+.|..|..-+..+...++.
T Consensus 11 l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~ 52 (60)
T cd00193 11 LEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKR 52 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445566667777777777777777777777766654
No 135
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.98 E-value=1.4e+02 Score=27.56 Aligned_cols=59 Identities=12% Similarity=0.002 Sum_probs=38.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 314 RPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 314 ~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
+.....+.|..=|++=.++.+-..++++.-.+.|+.|+.||..-.++-|..-++++-..
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~ 96 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIK 96 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666556666666777777778888888888877665555555555443
No 136
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.51 E-value=2.8e+02 Score=24.64 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q psy2197 79 FDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKS 116 (394)
Q Consensus 79 F~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gskKA 116 (394)
......|+++.+.+-..|..|+=.+-.+++-+++...|
T Consensus 67 ~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~ 104 (141)
T PF13874_consen 67 DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYA 104 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34678899999999999999999999999988876554
No 137
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=29.46 E-value=1e+02 Score=27.92 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy2197 346 RLKQAKEEAQEDIEK 360 (394)
Q Consensus 346 rLKqAk~eA~~EI~~ 360 (394)
.+.+|+.||++.+.+
T Consensus 174 ~~~~a~~ea~~~~~~ 188 (196)
T cd03401 174 VVEKAEQEKQAAVIR 188 (196)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666665555
No 138
>KOG4571|consensus
Probab=29.42 E-value=1.9e+02 Score=29.60 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI 368 (394)
Q Consensus 329 EkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~e 368 (394)
|+||..=--++-..|+.+||+--.+-++||.-+|.--.+-
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344445555555555555555555444433
No 139
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=29.05 E-value=3e+02 Score=26.18 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 62 IQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIE 108 (394)
Q Consensus 62 ~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIe 108 (394)
..+....++|-++.+.+-..+..+|...++.+-.|+.|+..++.-++
T Consensus 17 ~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~ 63 (204)
T PF00517_consen 17 NGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALERYLK 63 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 34444455555555555555555555555555555555555555443
No 140
>PRK10428 hypothetical protein; Provisional
Probab=28.43 E-value=1.2e+02 Score=24.34 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE 364 (394)
Q Consensus 324 ~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~ 364 (394)
.+++||=.+.+++-.+++ +...+|++|+++|+.|...
T Consensus 28 ~~~~~eG~~dql~GkiQe----~~G~~Kd~a~~~~~~~~~~ 64 (69)
T PRK10428 28 DMTVIEGKRDQLVGKIQE----RYGYQKDQAEKEVVDWETR 64 (69)
T ss_pred HHHHHcCcHHHHHHHHHH----HHhHHHHHHHHHHHHHHHh
Confidence 356777777777766644 4889999999999999765
No 141
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.42 E-value=3.7e+02 Score=30.75 Aligned_cols=41 Identities=7% Similarity=-0.036 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy2197 68 LDILDESMRNVFDHTKKSIWRTRQCLHAIEK---RSSVVCANIE 108 (394)
Q Consensus 68 L~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~---RI~~aqaKIe 108 (394)
..........|+..++.+|..+...|..+.+ .+..+.++..
T Consensus 235 ~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~ 278 (771)
T TIGR01069 235 KNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARAR 278 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777888888777777666555 4444444443
No 142
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=28.41 E-value=2.3e+02 Score=26.89 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYR 362 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr 362 (394)
.+|+-.++|..+|+..--.=+..|+.+|+++.++-+
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~ 38 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAK 38 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666633322223344444444444433
No 143
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=28.07 E-value=1.8e+02 Score=27.23 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=8.0
Q ss_pred cchhhHHHHHHHHHHH
Q psy2197 317 VVSLGIQQLLAAEKRA 332 (394)
Q Consensus 317 ~~s~GIq~LL~AEkeA 332 (394)
....-|.+-+.||++.
T Consensus 153 ~i~~ai~~~~~ae~~~ 168 (242)
T cd03405 153 EVSESVYRRMRAERER 168 (242)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555543
No 144
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=27.60 E-value=2.8e+02 Score=27.02 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=44.8
Q ss_pred cccCCCCCCCCccchh-hHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--HHHHHHHHHHHHHHHH
Q psy2197 305 RYALPTKPTRPPVVSL-GIQQLLAAEKRAAEKVAEAKKRKARR-------------LKQAKE--EAQEDIEKYRQEREKI 368 (394)
Q Consensus 305 ~~~~~~~~~~~a~~s~-GIq~LL~AEkeA~~iV~~Ar~~k~~r-------------LKqAk~--eA~~EI~~yr~~kE~e 368 (394)
|-.-|--|+.-+.++. |-+-+-+|+.+|+.|..+||..-.+. -++|.. ++-.|++.|.+..|.+
T Consensus 15 rp~~~ii~Aae~~~w~da~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~ 94 (207)
T PF06635_consen 15 RPAGRIIPAAEAAQWRDAAAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAARLLAQATAEVARYLAGLEQE 94 (207)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444454 88899999999999999999854432 233333 4456777788888877
Q ss_pred HHHHH
Q psy2197 369 FREYE 373 (394)
Q Consensus 369 f~~~~ 373 (394)
.-...
T Consensus 95 l~~LV 99 (207)
T PF06635_consen 95 LAELV 99 (207)
T ss_pred HHHHH
Confidence 76554
No 145
>PRK15322 invasion protein OrgB; Provisional
Probab=27.40 E-value=1.2e+02 Score=29.57 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKK 341 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~ 341 (394)
+|.+.|.+|+.+|..
T Consensus 20 qA~~kA~~ii~qA~~ 34 (210)
T PRK15322 20 QARRRAKRILRQAEE 34 (210)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555544444
No 146
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.35 E-value=2.7e+02 Score=23.00 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2197 69 DILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNI 113 (394)
Q Consensus 69 ~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gs 113 (394)
+-|..-++++=..+ .+|...-.||+++..++..++.+|..|+..
T Consensus 21 daLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 21 DALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333 345556677888888888888888887754
No 147
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.57 E-value=2.2e+02 Score=23.02 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 76 RNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 76 ndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.++|+.+..+|..-=+.++.++.++..++.+-..|.
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456666666666666666666666666666544443
No 148
>PHA02414 hypothetical protein
Probab=26.44 E-value=1.9e+02 Score=25.27 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q psy2197 76 RNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQK 115 (394)
Q Consensus 76 ndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gskK 115 (394)
.||-..|+.++.-+.++-.+|-=.|..+..+|++|.++.+
T Consensus 42 RdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~ 81 (111)
T PHA02414 42 RDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNK 81 (111)
T ss_pred HHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhccc
Confidence 3455589999999999999999999999999999999754
No 149
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=26.40 E-value=2.7e+02 Score=20.60 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 61 IIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCA 105 (394)
Q Consensus 61 I~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqa 105 (394)
+.+++..|..+-.-=+.+.++|+..+.....++..-..++..+..
T Consensus 16 l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 16 LKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666676777788888888888888888888887776643
No 150
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.16 E-value=3.4e+02 Score=27.15 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeeCC
Q psy2197 85 SIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKS 123 (394)
Q Consensus 85 RV~~nr~rLq~I~~RI~~aqaKIekL~gskKAItVfSsA 123 (394)
+......++..+...+..++++++.++..-+.++|.||.
T Consensus 240 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~ 278 (423)
T TIGR01843 240 FREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPV 278 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCC
Confidence 334444556777778888888888888777778888875
No 151
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.14 E-value=2.6e+02 Score=22.75 Aligned_cols=45 Identities=4% Similarity=0.034 Sum_probs=31.1
Q ss_pred CchhhHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 56 KHNDTIIQIANSLDILDES--MR----NVFDHTKKSIWRTRQCLHAIEKRS 100 (394)
Q Consensus 56 r~EEtI~qi~daL~~Ld~v--sn----dVF~rIs~RV~~nr~rLq~I~~RI 100 (394)
+.+|++.---+++++|..+ .+ .....|..++.+..+|++.|...+
T Consensus 21 ~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 21 RYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888899999774 23 556666666766666666666554
No 152
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=25.79 E-value=4.2e+02 Score=24.86 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER 365 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~k 365 (394)
+-|=.|+.+|..++.+|...=-.-..+.|.+++.|+...+.+-
T Consensus 38 ~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 38 QILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888888887766544557777888888888877653
No 153
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.58 E-value=3.1e+02 Score=21.62 Aligned_cols=45 Identities=2% Similarity=0.049 Sum_probs=29.3
Q ss_pred CchhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 56 KHNDTIIQIANSLDILDESMR-----NVFDHTKKSIWRTRQCLHAIEKRS 100 (394)
Q Consensus 56 r~EEtI~qi~daL~~Ld~vsn-----dVF~rIs~RV~~nr~rLq~I~~RI 100 (394)
...|++.-..+++++|..++. ..=..+..++.+...|++.|..-|
T Consensus 21 ~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l 70 (75)
T cd02678 21 NYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYL 70 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999988873 333455555555555555555444
No 154
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=25.55 E-value=1.7e+02 Score=22.01 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 85 SIWRTRQCLHAIEKRSSVVCANI 107 (394)
Q Consensus 85 RV~~nr~rLq~I~~RI~~aqaKI 107 (394)
.+.....+|+++..|+...+.++
T Consensus 24 ~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 24 ALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334445666666666555543
No 155
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=25.24 E-value=2.1e+02 Score=25.86 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy2197 319 SLGIQQLLAAEKRAAE---KVAEAKKRKARRLKQAKEEAQ 355 (394)
Q Consensus 319 s~GIq~LL~AEkeA~~---iV~~Ar~~k~~rLKqAk~eA~ 355 (394)
...|..=..|+++|.. .+.+|+.++.+++.+|+.||+
T Consensus 155 ~~ai~~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 155 TKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444445544333 466677777777777776664
No 156
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.95 E-value=3.1e+02 Score=31.37 Aligned_cols=43 Identities=7% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy2197 66 NSLDILDESMRNVFDHTKKSIWRTRQCLHAIEK---RSSVVCANIE 108 (394)
Q Consensus 66 daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~---RI~~aqaKIe 108 (394)
+...........|+..++..|..+...|..+.+ ++..+.++..
T Consensus 238 ~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~ 283 (782)
T PRK00409 238 ELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARAR 283 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666777888888888888887777555 4444444443
No 157
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=24.78 E-value=4.6e+02 Score=25.16 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 58 NDTIIQIANSLDILDESMRNV---FDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 58 EEtI~qi~daL~~Ld~vsndV---F~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
++.+..+...|..|+...... .+.+..+|.....+|.....|...+..+|.+|.
T Consensus 147 E~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 147 EEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665544333 456677788888888888888888888777765
No 158
>PRK15322 invasion protein OrgB; Provisional
Probab=24.58 E-value=2.6e+02 Score=27.28 Aligned_cols=32 Identities=34% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 325 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE 356 (394)
Q Consensus 325 LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~ 356 (394)
=|.+-+.|..++++|++.=..-+++|..||++
T Consensus 7 ~l~~~~~a~~l~~qA~~kA~~ii~qA~~eaE~ 38 (210)
T PRK15322 7 TLERYFSAERLEQQARRRAKRILRQAEEEAET 38 (210)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888888888777778888877764
No 159
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=24.01 E-value=3.8e+02 Score=24.33 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 330 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 374 (394)
Q Consensus 330 keA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~ 374 (394)
+.....+.+.|+.-..++.++|.||...++..+..-++...+.++
T Consensus 5 ~~~~~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E~~ 49 (151)
T PF11875_consen 5 RRKKREIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKEEE 49 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777777889999999999999988776665555443
No 160
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=23.26 E-value=3.1e+02 Score=28.08 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeeCCCCC
Q psy2197 67 SLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQKSVTIVSKSKYP 126 (394)
Q Consensus 67 aL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gskKAItVfSsAKYP 126 (394)
.+..|-....+.|.++..-+.+.+.|++.|.+|+..+ +..+-.+-|+|-.+.+|-
T Consensus 69 ~i~kl~~~l~~~~~~~~~~~~~~~~r~~~L~~~~~~l-----~~~~~~~~i~v~~~~~l~ 123 (339)
T PF12699_consen 69 FIKKLIADLKDYAVKFMSGIERVEERIDKLQERAKKL-----KKPDEKKEITVKNNQRLS 123 (339)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh-----ccCCCCceEEecCcccee
Confidence 3444455555555555555555555555555555444 222344555555444433
No 161
>KOG4691|consensus
Probab=23.19 E-value=6e+02 Score=24.85 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHh----ccchHHHHHHHh
Q psy2197 359 EKYRQEREKIFREYEAKV----SHCNIVLIIKAA 388 (394)
Q Consensus 359 ~~yr~~kE~ef~~~~~~~----s~~~~~~e~e~~ 388 (394)
++.+.+.|.|-......+ ..+|+.+.||+.
T Consensus 154 ~a~k~qae~eVl~~iersknfITReNLea~Ie~A 187 (227)
T KOG4691|consen 154 QAWKQQAEREVLQLIERSKNFITRENLEARIEAA 187 (227)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHH
Confidence 344455555554443222 567777777654
No 162
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.08 E-value=5.2e+02 Score=26.16 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhc
Q psy2197 59 DTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEK----------RSSVVCANIEKLKN 112 (394)
Q Consensus 59 EtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~----------RI~~aqaKIekL~g 112 (394)
+.|-.|.|-|..|.....+.......+++..|..|-.|.+ |=..++.+|.+|+-
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~ 159 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKY 159 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHh
Confidence 4566777777777777777788888888888888777665 45577888888863
No 163
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.01 E-value=4e+02 Score=22.25 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 64 IANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKL 110 (394)
Q Consensus 64 i~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL 110 (394)
+-.+|..|+..++..=+.|..|++..+.. ..+..+|....+.-.+|
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rL 51 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRL 51 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHH
Confidence 34567777777777777777777766665 66666666555544443
No 164
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.97 E-value=4.1e+02 Score=22.18 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 75 MRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 75 sndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.+++-..++.|++....++..+...+...+.++..++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444444444443
No 165
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=21.88 E-value=5.2e+02 Score=22.95 Aligned_cols=30 Identities=7% Similarity=0.133 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 78 VFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107 (394)
Q Consensus 78 VF~rIs~RV~~nr~rLq~I~~RI~~aqaKI 107 (394)
-|+.|..+|..+++++..|.+++..|...+
T Consensus 73 sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L 102 (142)
T PF04048_consen 73 SYSQILSSISESQERIRELKESLQEAKSLL 102 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777776666655
No 166
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.57 E-value=3.9e+02 Score=23.28 Aligned_cols=43 Identities=16% Similarity=0.402 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 65 ANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 65 ~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.+|++.|++-.+ .+...++...+.+..++++++..+..+.++.
T Consensus 93 ~eA~~~l~~~~~----~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 93 DEAIEILDKRKE----ELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 3344444445555555555555555555443
No 167
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.95 E-value=1.6e+02 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy2197 96 IEKRSSVVCANIEKLKN 112 (394)
Q Consensus 96 I~~RI~~aqaKIekL~g 112 (394)
|+.|+....+.++.|..
T Consensus 40 l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 168
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.72 E-value=5.9e+02 Score=24.16 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 346 RLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 346 rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
+..+--+-|..|++.|+.+|=.+|+.-.-..
T Consensus 147 ~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~ 177 (198)
T cd07630 147 EFEEISSLAKKELERFHRQRVLELQSALVCY 177 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566777777777777777665444
No 169
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.58 E-value=2e+02 Score=25.42 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 343 KARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 343 k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
+...|++--++++.|+++||.+-+..|-.
T Consensus 26 ~q~~l~~eL~~~k~el~~yk~~V~~HF~~ 54 (128)
T PF06295_consen 26 KQAKLEQELEQAKQELEQYKQEVNDHFAQ 54 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999999999976
No 170
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.39 E-value=5.8e+02 Score=23.58 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
.=+.++...=.++...+..|+. ++...-+.+..|++.|..+|-.+|+.....+
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~----~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~ 215 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKD----EFEEISENIKKELERFEKEKVKDFKSMLEEY 215 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544566666666654 4788888999999999999999999887665
No 171
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.31 E-value=2.4e+02 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2197 79 FDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKN 112 (394)
Q Consensus 79 F~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~g 112 (394)
+..+.+++...+++++.++.|-..+.++|+.|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4578888999999999999999999999999985
Done!