Query psy2197
Match_columns 394
No_of_seqs 194 out of 308
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:42:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_G V-type proton ATPase su 99.9 1.7E-25 5.7E-30 192.9 8.0 79 312-390 2-82 (119)
2 2k6i_A Uncharacterized protein 95.5 0.0087 3E-07 45.3 3.1 43 314-356 10-52 (56)
3 1l2p_A ATP synthase B chain; a 94.1 0.41 1.4E-05 35.4 9.2 48 323-370 2-49 (61)
4 3v6i_A V-type ATP synthase sub 91.5 0.82 2.8E-05 40.7 9.0 46 327-372 10-55 (187)
5 3p8c_D Wiskott-aldrich syndrom 91.4 0.49 1.7E-05 45.9 7.9 54 60-113 33-86 (279)
6 2kk7_A V-type ATP synthase sub 88.1 0.68 2.3E-05 34.0 4.6 31 327-357 18-48 (52)
7 4efa_E V-type proton ATPase su 74.8 10 0.00034 34.8 8.3 45 326-370 26-70 (233)
8 3v6i_A V-type ATP synthase sub 73.0 18 0.00062 31.9 9.2 41 323-363 17-57 (187)
9 3v6i_B V-type ATP synthase, su 71.2 28 0.00096 29.1 9.2 55 322-376 19-73 (105)
10 2dm9_A V-type ATP synthase sub 70.4 0.89 3E-05 39.6 0.0 44 327-370 14-57 (198)
11 1l2p_A ATP synthase B chain; a 64.4 38 0.0013 24.5 8.0 36 336-371 4-39 (61)
12 1eh1_A Ribosome recycling fact 53.2 89 0.003 28.3 10.0 30 267-296 51-94 (185)
13 1dd5_A Ribosome recycling fact 53.1 81 0.0028 28.6 9.6 30 267-296 50-93 (185)
14 1ise_A Ribosome recycling fact 52.9 81 0.0028 28.6 9.6 30 267-296 50-93 (185)
15 1wqg_A Ribosome recycling fact 52.1 91 0.0031 28.2 9.8 30 267-296 50-93 (185)
16 2yny_A General control protein 45.1 44 0.0015 28.1 6.0 35 77-111 69-103 (106)
17 3v6i_B V-type ATP synthase, su 44.0 1.4E+02 0.0048 24.9 9.4 41 320-360 6-46 (105)
18 2kk7_A V-type ATP synthase sub 43.4 90 0.0031 22.5 6.9 41 321-367 7-47 (52)
19 3b5n_D Protein transport prote 39.7 1.2E+02 0.004 22.8 8.0 49 62-110 13-64 (64)
20 1is1_A Ribosome recycling fact 36.4 2.4E+02 0.0082 25.4 10.0 31 267-297 50-94 (185)
21 3pp5_A BRK1, protein brick1; t 34.9 1.6E+02 0.0056 23.0 8.0 52 59-110 20-71 (73)
22 1nkp_B MAX protein, MYC proto- 33.9 1.1E+02 0.0039 23.5 6.5 32 82-113 52-83 (83)
23 2o6n_A RH4B designed peptide; 29.4 1.2E+02 0.0042 20.2 5.0 25 337-361 5-29 (35)
24 2yy0_A C-MYC-binding protein; 28.1 89 0.003 22.8 4.7 43 66-108 2-50 (53)
25 2zuo_A MVP, major vault protei 26.4 3E+02 0.01 30.6 10.3 18 353-370 754-771 (861)
26 4gif_A Polycystic kidney disea 26.3 83 0.0028 22.6 4.0 37 74-110 4-40 (45)
27 2yo3_A General control protein 25.8 2.3E+02 0.0079 27.2 8.3 61 59-119 198-262 (268)
28 2pnv_A Small conductance calci 25.8 1.6E+02 0.0054 20.8 5.4 37 73-109 5-41 (43)
29 2dm9_A V-type ATP synthase sub 25.3 15 0.00051 31.7 0.0 42 323-364 21-66 (198)
30 4efa_E V-type proton ATPase su 24.7 3.6E+02 0.012 24.3 9.2 36 329-364 18-53 (233)
31 2xdj_A Uncharacterized protein 24.7 2.6E+02 0.0089 22.1 8.2 38 76-113 19-56 (83)
32 1kd8_B GABH BLL, GCN4 acid bas 24.5 84 0.0029 21.6 3.6 29 84-112 1-29 (36)
33 1aq5_A Matrilin-1, CMP, cartil 23.4 1.8E+02 0.006 21.1 5.3 29 71-99 17-45 (47)
34 1fxk_C Protein (prefoldin); ar 23.0 2.3E+02 0.0079 23.2 7.0 31 81-111 99-129 (133)
35 2bez_C E2 glycoprotein; coiled 22.3 2.8E+02 0.0095 22.0 6.7 33 65-97 43-75 (77)
36 4gfq_A Ribosome-recycling fact 21.4 4.8E+02 0.016 24.0 9.5 39 259-297 66-118 (209)
37 2zqm_A Prefoldin beta subunit 21.0 1.9E+02 0.0066 22.9 6.0 33 81-113 81-113 (117)
38 2nps_B Syntaxin 13, vesicle-as 21.0 2.6E+02 0.009 20.8 7.7 49 57-109 4-52 (71)
39 2o6n_A RH4B designed peptide; 20.9 1.9E+02 0.0065 19.3 4.6 28 326-353 5-32 (35)
40 1fxk_A Prefoldin; archaeal pro 20.8 2E+02 0.0069 22.4 6.0 37 75-111 63-99 (107)
41 1tzy_B Histone H2B; histone-fo 20.7 88 0.003 26.9 3.9 38 42-85 34-77 (126)
42 2nqb_D Histone H2B; nucleosome 20.7 89 0.0031 26.8 3.9 21 65-85 54-74 (123)
43 1l4a_D S-SNAP25 fusion protein 20.6 2.5E+02 0.0085 22.1 6.4 61 51-111 19-85 (87)
44 2zqm_A Prefoldin beta subunit 20.5 3.2E+02 0.011 21.6 7.5 38 75-112 68-105 (117)
45 3gpv_A Transcriptional regulat 20.5 2.1E+02 0.0071 24.2 6.3 39 75-113 93-131 (148)
46 3gp4_A Transcriptional regulat 20.4 2.2E+02 0.0075 24.0 6.4 32 80-111 84-115 (142)
47 1gl2_D Syntaxin 8, vesicle tra 20.2 2.6E+02 0.0088 20.4 7.4 52 59-110 9-63 (65)
No 1
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=99.92 E-value=1.7e-25 Score=192.89 Aligned_cols=79 Identities=34% Similarity=0.493 Sum_probs=65.2
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHhh
Q psy2197 312 PTRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV--SHCNIVLIIKAAA 389 (394)
Q Consensus 312 ~~~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~--s~~~~~~e~e~~t 389 (394)
|.|+.|||+|||+||+||++|++||++||++|++||||||+||++||++||+++|+||+++++++ +.+++..++|++|
T Consensus 2 ~~~~mSqs~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT 81 (119)
T 4efa_G 2 PKVPMSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGV 81 (119)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSS
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999 5588888888887
Q ss_pred c
Q psy2197 390 N 390 (394)
Q Consensus 390 ~ 390 (394)
.
T Consensus 82 ~ 82 (119)
T 4efa_G 82 Q 82 (119)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=95.48 E-value=0.0087 Score=45.25 Aligned_cols=43 Identities=30% Similarity=0.321 Sum_probs=36.7
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 314 RPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE 356 (394)
Q Consensus 314 ~~a~~s~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~ 356 (394)
|..+...-|..+-.||.+|.+||.+|.+.+.+++..|++||..
T Consensus 10 ~~~~~~EvL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke 52 (56)
T 2k6i_A 10 MGVSVMEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK 52 (56)
T ss_dssp CCCCCTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677788999999999999999999999999999975
No 3
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=94.08 E-value=0.41 Score=35.39 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
++|-.|..+|..||.+|++...+-..+++.+|..|.+....+-..+..
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie 49 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999988877777777777666665554444433
No 4
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=91.50 E-value=0.82 Score=40.71 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY 372 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~ 372 (394)
+|+.+|..|+++|++.-.+=+.+|+++|++..+....+-|.+-+..
T Consensus 10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~ 55 (187)
T 3v6i_A 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAA 55 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998888899999999988888877766666544
No 5
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=91.43 E-value=0.49 Score=45.93 Aligned_cols=54 Identities=11% Similarity=0.219 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2197 60 TIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNI 113 (394)
Q Consensus 60 tI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gs 113 (394)
|+.-|+.-|..|...+++||+-+..-+.....|+..|+.||..++++|.++-..
T Consensus 33 tL~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~ 86 (279)
T 3p8c_D 33 SLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPK 86 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 456667778888999999999999999999999999999999999999876543
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=88.09 E-value=0.68 Score=33.99 Aligned_cols=31 Identities=39% Similarity=0.499 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQED 357 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~E 357 (394)
+|+++|..|+.+|++.-..=+.+|+.+|+++
T Consensus 18 eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 18 DAKAEANKIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999888888888888888765
No 7
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=74.81 E-value=10 Score=34.78 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 326 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 326 L~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
=+|+.+|.+|..+|...-..-..++.++|...|.++...++++-.
T Consensus 26 qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e 70 (233)
T 4efa_E 26 KEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAM 70 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999998876666666666666666666555555444
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=72.97 E-value=18 Score=31.89 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQ 363 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~ 363 (394)
.-|=+|+++|.+|+++|++.=.+....+..+|+++++..+.
T Consensus 17 ~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~ 57 (187)
T 3v6i_A 17 ALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALR 57 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668999999999999987666666666666666665543
No 9
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=71.25 E-value=28 Score=29.13 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376 (394)
Q Consensus 322 Iq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~~~~~~ 376 (394)
-++|=.|-++|..+|.+|...=..=|.+|...|+..-.+|+.+-+.|-.+...+.
T Consensus 19 ~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 19 LERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777777776666666777777788888888888777776665443
No 10
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=70.41 E-value=0.89 Score=39.65 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 327 ~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~ 370 (394)
+|+.+|..|+++|+....+-+.+|+++|+.|.+....+-+++-.
T Consensus 14 ~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~ 57 (198)
T 2dm9_A 14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAE 57 (198)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999988888888988888877776665554443
No 11
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=64.41 E-value=38 Score=24.53 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 336 VAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371 (394)
Q Consensus 336 V~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ef~~ 371 (394)
+.+||..-..-+.+|+.+|+..+++.+.+-..+-.+
T Consensus 4 L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~ 39 (61)
T 1l2p_A 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTK 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 12
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=53.22 E-value=89 Score=28.31 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCCCccccchh---------chhhHH-----HHHhhhccccccc
Q psy2197 267 KLGAKTNKSII---------WCQNSM-----ARIKSTAGWNRTR 296 (394)
Q Consensus 267 ~lg~Vpn~s~~---------~~~~~~-----~~~~~~~~~~~~~ 296 (394)
-|.+|++++++ |--+.+ |..+|-+|+||+.
T Consensus 51 pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~ 94 (185)
T 1eh1_A 51 PLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSN 94 (185)
T ss_dssp EGGGTCEEECSSTTEEEEECSSHHHHHHHHHHHSSSTTCCCEEE
T ss_pred cHHHceeeecCCCCEEEEecCCHhHHHHHHHHHHHcCCCCCccc
Confidence 47788888776 555554 3456889999985
No 13
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=53.09 E-value=81 Score=28.59 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=21.5
Q ss_pred CCCCccccchh---------chhhHH-----HHHhhhccccccc
Q psy2197 267 KLGAKTNKSII---------WCQNSM-----ARIKSTAGWNRTR 296 (394)
Q Consensus 267 ~lg~Vpn~s~~---------~~~~~~-----~~~~~~~~~~~~~ 296 (394)
-|.+|++++++ |--+.+ |..+|-+|.||+.
T Consensus 50 pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~ 93 (185)
T 1dd5_A 50 PVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPIN 93 (185)
T ss_dssp EGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCEE
T ss_pred cHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCccc
Confidence 37777777776 544444 4567899999995
No 14
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=52.89 E-value=81 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=21.6
Q ss_pred CCCCccccchh---------chhhHH-----HHHhhhccccccc
Q psy2197 267 KLGAKTNKSII---------WCQNSM-----ARIKSTAGWNRTR 296 (394)
Q Consensus 267 ~lg~Vpn~s~~---------~~~~~~-----~~~~~~~~~~~~~ 296 (394)
-|.+|++++++ |--+.+ |..+|-+|.||+.
T Consensus 50 pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~ 93 (185)
T 1ise_A 50 PLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNS 93 (185)
T ss_dssp EGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTTCTTCCCEE
T ss_pred cHHHceeeecCCCCEEEEeccCHhHHHHHHHHHHHcCCCCCccc
Confidence 37778888776 554544 4567899999995
No 15
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=52.13 E-value=91 Score=28.20 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=21.6
Q ss_pred CCCCccccchh---------chhhHH-----HHHhhhccccccc
Q psy2197 267 KLGAKTNKSII---------WCQNSM-----ARIKSTAGWNRTR 296 (394)
Q Consensus 267 ~lg~Vpn~s~~---------~~~~~~-----~~~~~~~~~~~~~ 296 (394)
-|.+|++++++ |--+.+ |..+|-+|+||+.
T Consensus 50 pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~ 93 (185)
T 1wqg_A 50 PITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTN 93 (185)
T ss_dssp EGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCEE
T ss_pred cHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHcCCCCCccc
Confidence 37777777776 554544 4567899999995
No 16
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=45.07 E-value=44 Score=28.08 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 77 NVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 77 dVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
|-|..++.+|..+..++..+..+|..++..|.+|+
T Consensus 69 dAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 69 SALSALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666667777777776666654
No 17
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=44.05 E-value=1.4e+02 Score=24.92 Aligned_cols=41 Identities=34% Similarity=0.395 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 320 LGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360 (394)
Q Consensus 320 ~GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~ 360 (394)
.-|+.|-.=|++=...+.+||+.=...+++|..||..=+.+
T Consensus 6 gllk~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~e 46 (105)
T 3v6i_B 6 GLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEE 46 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888899999998888899998888775554
No 18
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=43.37 E-value=90 Score=22.49 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 321 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367 (394)
Q Consensus 321 GIq~LL~AEkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~kE~ 367 (394)
|+..|. .+|+.+|+..-..-|.+|+.+|+.=+++-+.+-|+
T Consensus 7 gle~i~------~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 7 GVDKIK------SKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp CHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554 68999999998889999999999988886655443
No 19
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=39.73 E-value=1.2e+02 Score=22.79 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 62 IQIANSLDILDESMRNVFDHT---KKSIWRTRQCLHAIEKRSSVVCANIEKL 110 (394)
Q Consensus 62 ~qi~daL~~Ld~vsndVF~rI---s~RV~~nr~rLq~I~~RI~~aqaKIekL 110 (394)
-++...+..|....-.+-.-| ..+|.+.-.+...+..||..+..+|.+|
T Consensus 13 d~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 13 DQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444444444444444444 4457777778888888888888888764
No 20
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=36.39 E-value=2.4e+02 Score=25.41 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=20.8
Q ss_pred CCCCccccchh---------chhhHH-----HHHhhhcccccccc
Q psy2197 267 KLGAKTNKSII---------WCQNSM-----ARIKSTAGWNRTRS 297 (394)
Q Consensus 267 ~lg~Vpn~s~~---------~~~~~~-----~~~~~~~~~~~~~~ 297 (394)
-|.+|++++++ |--+.+ |..+|-+|+||+..
T Consensus 50 pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~d 94 (185)
T 1is1_A 50 PLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSA 94 (185)
T ss_dssp EGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCEEE
T ss_pred cHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcccC
Confidence 36677777665 444443 45679999999953
No 21
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=34.88 E-value=1.6e+02 Score=23.03 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 59 DTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKL 110 (394)
Q Consensus 59 EtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL 110 (394)
|-|.-|...+-++-+-.|.-=..-..|+...-.||+.|..++..++|||..+
T Consensus 20 e~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAklsSI 71 (73)
T 3pp5_A 20 EFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKTV 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444444443333556677778888899999999999998754
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.93 E-value=1.1e+02 Score=23.46 Aligned_cols=32 Identities=6% Similarity=0.224 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2197 82 TKKSIWRTRQCLHAIEKRSSVVCANIEKLKNI 113 (394)
Q Consensus 82 Is~RV~~nr~rLq~I~~RI~~aqaKIekL~gs 113 (394)
+..++......++.+..+...++++|.+|.|+
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~~ 83 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRALGGC 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556666778888888888899999988875
No 23
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=29.41 E-value=1.2e+02 Score=20.15 Aligned_cols=25 Identities=48% Similarity=0.502 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 337 AEAKKRKARRLKQAKEEAQEDIEKY 361 (394)
Q Consensus 337 ~~Ar~~k~~rLKqAk~eA~~EI~~y 361 (394)
.+|++.-+--+|.||+|--.||..-
T Consensus 5 eqakkeiaylikkakeeileeikka 29 (35)
T 2o6n_A 5 EQAKKEIAYLIKKAKEEILEEIKKA 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666777766666543
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.12 E-value=89 Score=22.80 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 66 NSLDILDESMR------NVFDHTKKSIWRTRQCLHAIEKRSSVVCANIE 108 (394)
Q Consensus 66 daL~~Ld~vsn------dVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIe 108 (394)
++|+++-+... .=++.+..-....+.++..+..++...+++++
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555544433 33445555566666666666666666666654
No 25
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=26.41 E-value=3e+02 Score=30.57 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2197 353 EAQEDIEKYRQEREKIFR 370 (394)
Q Consensus 353 eA~~EI~~yr~~kE~ef~ 370 (394)
|++.|++..++.+|.|..
T Consensus 754 ~~~ael~~~~~~~~~el~ 771 (861)
T 2zuo_A 754 ETEAELERVKKVREMELI 771 (861)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455566655665655554
No 26
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=26.28 E-value=83 Score=22.62 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 74 SMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKL 110 (394)
Q Consensus 74 vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL 110 (394)
|+.+=|.++..||-+...-|..|-.+|+.+-.|++-+
T Consensus 4 Vs~eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~ 40 (45)
T 4gif_A 4 VSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKML 40 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998888887754
No 27
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=25.85 E-value=2.3e+02 Score=27.21 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCceEEE
Q psy2197 59 DTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK----NIQKSVTI 119 (394)
Q Consensus 59 EtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~----gskKAItV 119 (394)
-.+-|.-.+|.....-.+.-|+.|.++|.....++.++.+||+..--||..|- -.||-|+.
T Consensus 198 VNv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (268)
T 2yo3_A 198 VNYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKL 262 (268)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34566666777777788888889999999999999999998888888876654 34555554
No 28
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.79 E-value=1.6e+02 Score=20.82 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 73 ESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEK 109 (394)
Q Consensus 73 ~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIek 109 (394)
.++-|+-+-++.|=+..-.||..+..|+...++.+.+
T Consensus 5 n~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455565666666655555555555555555555443
No 29
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=25.30 E-value=15 Score=31.70 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy2197 323 QQLLAAEKRAAEKVAEAKKRKA----RRLKQAKEEAQEDIEKYRQE 364 (394)
Q Consensus 323 q~LL~AEkeA~~iV~~Ar~~k~----~rLKqAk~eA~~EI~~yr~~ 364 (394)
.-|-+|+++|.+|+.+|++.-. +.+.+|+.+|+.+...-.+.
T Consensus 21 ~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~ 66 (198)
T 2dm9_A 21 YILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIAN 66 (198)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888776543 33444444444444443333
No 30
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=24.74 E-value=3.6e+02 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE 364 (394)
Q Consensus 329 EkeA~~iV~~Ar~~k~~rLKqAk~eA~~EI~~yr~~ 364 (394)
++-.+.|.++|+..-..=+..|.+||+.|......+
T Consensus 18 ~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~ 53 (233)
T 4efa_E 18 NKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRN 53 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778887766666778888888776665443
No 31
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.72 E-value=2.6e+02 Score=22.09 Aligned_cols=38 Identities=0% Similarity=0.070 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2197 76 RNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNI 113 (394)
Q Consensus 76 ndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gs 113 (394)
+..-.-+.++|...+..+..|.+.|+..+..|++++..
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445577888889999999999999999988888753
No 32
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.54 E-value=84 Score=21.58 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2197 84 KSIWRTRQCLHAIEKRSSVVCANIEKLKN 112 (394)
Q Consensus 84 ~RV~~nr~rLq~I~~RI~~aqaKIekL~g 112 (394)
.|+++...+++.+-.+-+.++++|..|++
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36677778888888888888888888774
No 33
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=23.37 E-value=1.8e+02 Score=21.08 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 71 LDESMRNVFDHTKKSIWRTRQCLHAIEKR 99 (394)
Q Consensus 71 Ld~vsndVF~rIs~RV~~nr~rLq~I~~R 99 (394)
+...+......+++++.....||+++..|
T Consensus 17 FQ~~v~~~l~~Lt~kL~~vt~rle~lEnr 45 (47)
T 1aq5_A 17 FQTKVEELINTLQQKLEAVAKRIEALENK 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444
No 34
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.00 E-value=2.3e+02 Score=23.22 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 81 HTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 81 rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.+..+++.....++.+.++|..++..|+++.
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666666666654
No 35
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=22.26 E-value=2.8e+02 Score=21.99 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 65 ANSLDILDESMRNVFDHTKKSIWRTRQCLHAIE 97 (394)
Q Consensus 65 ~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~ 97 (394)
..+|.+|-.-.+.=|+-|+..|...=.||+.|.
T Consensus 43 ~~aL~~L~~qL~~NFgAISssi~dIy~RLd~le 75 (77)
T 2bez_C 43 AQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 344555555556667777777666666666554
No 36
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=21.38 E-value=4.8e+02 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=26.9
Q ss_pred CCCeeeeeCCCCccccchh---------chhhHH-----HHHhhhcccccccc
Q psy2197 259 FSKLAVVLKLGAKTNKSII---------WCQNSM-----ARIKSTAGWNRTRS 297 (394)
Q Consensus 259 ~~~y~YvP~lg~Vpn~s~~---------~~~~~~-----~~~~~~~~~~~~~~ 297 (394)
.+-|+=.=-|.+|++++++ |=.+.+ |..+|-+|-||+..
T Consensus 66 VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI~~S~LglnP~~d 118 (209)
T 4gfq_A 66 VDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSND 118 (209)
T ss_dssp EESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHHHHHTSSCCCEEC
T ss_pred EeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHHHHcCCCCCCCcC
Confidence 3334444457888888887 666655 45588999999874
No 37
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.02 E-value=1.9e+02 Score=22.88 Aligned_cols=33 Identities=6% Similarity=0.005 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2197 81 HTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNI 113 (394)
Q Consensus 81 rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gs 113 (394)
.|..+|+....++..+...+..++.++.++.+.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 335556666666666666777777777666543
No 38
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=20.98 E-value=2.6e+02 Score=20.79 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=33.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 57 HNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEK 109 (394)
Q Consensus 57 ~EEtI~qi~daL~~Ld~vsndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIek 109 (394)
+.+.|.+|..++..|..+ |.-+..=|..-.+-|+.|..-|..+...|++
T Consensus 4 R~~ei~~ie~~i~eL~~i----F~dla~lV~eQge~id~Ie~nv~~a~~~v~~ 52 (71)
T 2nps_B 4 RETAIQQLEADILDVNQI----FKDLAMMIHDQGDLIDSIEANVESSEVHVER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445688888888777655 5555666667777777777777777666654
No 39
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=20.86 E-value=1.9e+02 Score=19.25 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 326 LAAEKRAAEKVAEAKKRKARRLKQAKEE 353 (394)
Q Consensus 326 L~AEkeA~~iV~~Ar~~k~~rLKqAk~e 353 (394)
-+|.++-+-.+.+|+..-...+|.||.|
T Consensus 5 eqakkeiaylikkakeeileeikkakqe 32 (35)
T 2o6n_A 5 EQAKKEIAYLIKKAKEEILEEIKKAKQE 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777778877777777777655
No 40
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.84 E-value=2e+02 Score=22.43 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 75 MRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 75 sndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.+++-..+..|++.....+..+...+..++.+++.++
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666554
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=20.71 E-value=88 Score=26.93 Aligned_cols=38 Identities=11% Similarity=0.326 Sum_probs=25.7
Q ss_pred cceeEEEee------eCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2197 42 KITNIEIAL------IQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKS 85 (394)
Q Consensus 42 ~~~~Y~Vpl------I~~DLr~EEtI~qi~daL~~Ld~vsndVF~rIs~R 85 (394)
....|+++| |.+|++-- -++++-++..+||||+||...
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gIS------skAm~ImnSfvnDiferIA~E 77 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGIS------SKAMGIMNSFVNDIFERIAGE 77 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEEC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcC------HHHHHHHHHHHHHHHHHHHHH
Confidence 344565554 45564422 467888999999999988654
No 42
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=20.66 E-value=89 Score=26.80 Aligned_cols=21 Identities=10% Similarity=0.461 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2197 65 ANSLDILDESMRNVFDHTKKS 85 (394)
Q Consensus 65 ~daL~~Ld~vsndVF~rIs~R 85 (394)
-++++-++..+||||+||...
T Consensus 54 skAm~ImnSfvnDiferIA~E 74 (123)
T 2nqb_D 54 SKAMSIMNSFVNDIFERIAAE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999988654
No 43
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.64 E-value=2.5e+02 Score=22.08 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=39.5
Q ss_pred eCCCCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 51 IQDDLKHN---DTIIQIANSLDILDESMRNVFDHTKKS---IWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 51 I~~DLr~E---EtI~qi~daL~~Ld~vsndVF~rIs~R---V~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
+..|.++. +.+-++...|..|-..+-++-.-|+.. +...-.++...+.||..+..++.+|-
T Consensus 19 ~~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll 85 (87)
T 1l4a_D 19 ITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85 (87)
T ss_dssp SSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34454443 345555556666777777776666554 66666777777778888888877764
No 44
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.50 E-value=3.2e+02 Score=21.56 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2197 75 MRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKN 112 (394)
Q Consensus 75 sndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~g 112 (394)
.+++-..+..|++.....+..+...+..++.+++.++.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777664
No 45
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.49 E-value=2.1e+02 Score=24.22 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2197 75 MRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNI 113 (394)
Q Consensus 75 sndVF~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~gs 113 (394)
..++..-+..++....++++.++..+..+..+|+.+...
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777777777777776653
No 46
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.38 E-value=2.2e+02 Score=23.98 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2197 80 DHTKKSIWRTRQCLHAIEKRSSVVCANIEKLK 111 (394)
Q Consensus 80 ~rIs~RV~~nr~rLq~I~~RI~~aqaKIekL~ 111 (394)
.-+..++....++++.++..+..+..+|+...
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 47
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.21 E-value=2.6e+02 Score=20.38 Aligned_cols=52 Identities=2% Similarity=0.021 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2197 59 DTIIQIANSLDILDESMRNVFDHTKKS---IWRTRQCLHAIEKRSSVVCANIEKL 110 (394)
Q Consensus 59 EtI~qi~daL~~Ld~vsndVF~rIs~R---V~~nr~rLq~I~~RI~~aqaKIekL 110 (394)
+.+-.+...+..|-.++-+|-+-|... +......+...+.|+..+..|+.+|
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777776666554 4445555556666666666665543
Done!