RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2197
(394 letters)
>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P,
hydrogen ION transport, hydrolase, ION transport,
transport; NMR {Saccharomyces cerevisiae}
Length = 60
Score = 74.2 bits (182), Expect = 3e-17
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 319 SLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 373
GI LL AEK A E V++A+K + +LKQAK +A ++I+ Y+ +++K +E+E
Sbjct: 5 KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFE 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 3e-08
Identities = 64/495 (12%), Positives = 136/495 (27%), Gaps = 159/495 (32%)
Query: 28 NSSHNGNKVQSNMI-----KITNIEIALIQDDLKHNDTII--------------QIANSL 68
+ +N N+V + + AL++ L+ ++ + S
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 69 DILDESMRNVFDHTKKSIWRT-RQCLHAIEKRSSVVCANIEKL-KNIQKSVTIVSKSKYP 126
+ + +F W + C V ++KL I + T S
Sbjct: 175 KVQCKMDFKIF-------WLNLKNC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 127 YPYNGN-YSVHIQHEHVTPMYKCPLLLYD---------------KTEINTRDID--NKLK 168
+ ++ + Y+ LL+ K + TR + L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 169 FYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV--IA 226
++ H ++ L +E S++ L ++ + + +P ++ IA
Sbjct: 283 AATTTHISLDHHSMTLTPDEVK--------SLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 227 RKPITKKHDHTEQVKMEDAPK--SLISKGI-------LRTDFSKLAV----------VLK 267
I + K + K ++I + R F +L+V +L
Sbjct: 335 ES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL- 392
Query: 268 LGAKTNKSIIWCQ----------NSMARIKSTAGWN--RTRSL---------------AL 300
S+IW N + + T S+ AL
Sbjct: 393 -------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 301 TRQ--TRYALPTK----PTRPPVVSLGIQQLLA---AEKRAAEKVAEAKK---------R 342
R Y +P PP + + E++ + +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 343 KARRLKQAKEEAQ------EDIEKYRQEREKIFREYEAKVS-----------------HC 379
K R A + + ++ Y+ +YE V+ +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 380 NIVLIIKAAANYFMF 394
+++ I A + +F
Sbjct: 566 DLLRIALMAEDEAIF 580
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 43.2 bits (101), Expect = 3e-05
Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK-YRQEREKI 368
KR E A +K + + +E+A++D+E+ +++ E++
Sbjct: 95 RKRLQELDAASKVMEQ----EWREKAKKDLEEWNQRQSEQV 131
Score = 38.6 bits (89), Expect = 0.001
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 326 LAAEKRA---AEKVAEAKKRKARRLKQAKEEA----QEDIEKYRQEREKIFREYEAKVS 377
+A R E + + ++ + +RL++ + QE EK +++ E+ + +V
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Score = 36.3 bits (83), Expect = 0.009
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 322 IQQLLAAEKRAAEKVAE-AKK-------RKARRLKQAKEEAQEDIEKYRQERE 366
+Q+L AA K ++ E AKK R++ ++++ K + + + Q+ +
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 35/272 (12%), Positives = 79/272 (29%), Gaps = 106/272 (38%)
Query: 3 QTTRVYRLTSSDVQIEEVTVEGGLNNSSHNGNKVQSNMIKITNIEIALIQDDLKHNDTII 62
+ L S ++ +S N V S M+ I+N+ +QD + ++ +
Sbjct: 312 EAYPNTSLPPSILE-----------DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 63 QIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANIEKLKNIQ------KS 116
++I S+ N + L VV + L + K+
Sbjct: 361 PAGKQVEI---SLVN-----------GAKNL--------VVSGPPQSLYGLNLTLRKAKA 398
Query: 117 VTIVSKSKYPY----------------PYNGNYSVHIQHEHVTPMYKCPLLLYDKTEINT 160
+ + +S+ P+ P+ H H LL +++
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPF---------HSH---------LLVPASDLIN 440
Query: 161 RDIDNK--------LKF--YHVKT--------NNMLHKNVELVCEESLGKLPAPIDSVMS 202
+D+ ++ Y ++ + V+ + P+
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL-------PVK---- 489
Query: 203 SILFNTSDNVYEKYIIVH-PGQVIARKPITKK 233
+ T+ +I+ PG +T +
Sbjct: 490 ---WETTTQFKATHILDFGPGGASGLGVLTHR 518
Score = 39.3 bits (91), Expect = 0.003
Identities = 53/339 (15%), Positives = 96/339 (28%), Gaps = 113/339 (33%)
Query: 48 IALIQDDLKHNDTIIQIANSLDILDESMRNVFDHTKKSIWRTRQCLHAIEKRSSVVCANI 107
I +IQ + + +L + + + K + + V I
Sbjct: 241 IGVIQ--------LAHYVVTAKLLGFTPGELRSYLKGAT----GHSQGL-----VTAVAI 283
Query: 108 EK-------LKNIQKSVT----IVSKSKYPYPYNGNYSVH-------IQHEHVTPMYKCP 149
+ +++K++T I + YP N S+ +++ P P
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYP---NTSLPPSILEDSLENNEGVP---SP 337
Query: 150 LLLYDKTEINTRDIDNKLKFYHV-KTNNMLHKNVELVCEESLGKLPAPIDSVMSSILFNT 208
+L + ++ + +V KTN+ L P + L N
Sbjct: 338 ML-------SISNLTQEQVQDYVNKTNSHL-----------------PAGKQVEISLVNG 373
Query: 209 SDNVYEKYIIV--HP----GQVIA-RKPITKKHDHTEQVKMEDAP----KSLISKGILRT 257
+ N+ +V P G + RK K +Q + P K S L
Sbjct: 374 AKNL-----VVSGPPQSLYGLNLTLRK--AKAPSGLDQSR---IPFSERKLKFSNRFLPV 423
Query: 258 D--F-SKL---AVVLKLGAKTNKSIIWCQNSMAR-IKSTAGWNRTRSLA------LTRQ- 303
F S L A L ++ + + + T + R L+ +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 304 TRY------ALPTKPTR-----PPVVSLGIQQLLAAEKR 331
R K T P S G+ L K
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGAS-GLGVLTHRNKD 521
Score = 36.2 bits (83), Expect = 0.021
Identities = 48/329 (14%), Positives = 97/329 (29%), Gaps = 118/329 (35%)
Query: 84 KSIWRTRQCLHAIEKRS-SVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHV 142
+ +W R H + S+ ++ + N ++TI + G I+ +
Sbjct: 1643 QDVW-NRADNHFKDTYGFSI----LDIVINNPVNLTI-----HFGGEKGKR---IRENYS 1689
Query: 143 TPMYKCPLLLYDKTEINTRDIDNKLK---FYHVK-----TNN-----MLHKNVELVCEES 189
+++ + KTE ++I+ F K T L +E E
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL---MEKAAFED 1746
Query: 190 L---GKLPAPIDSVM---S----SIL------FNTSDNVYEKYIIVHP-GQVIARKPITK 232
L G +PA D+ S + L + V +V G +
Sbjct: 1747 LKSKGLIPA--DATFAGHSLGEYAALASLADVMSIESLVE----VVFYRGMTMQ------ 1794
Query: 233 KHDHTEQVKMEDAPKSLISKGILRTDFSKLAV-----VLKLGAKTNKSIIWCQNSMARIK 287
P+ G R+++ +A+ + + ++ R+
Sbjct: 1795 ----------VAVPRD--ELG--RSNYGMIAINPGRVAASFSQEALQYVV------ERVG 1834
Query: 288 STAGW-----NRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAA-EKRAAEKVAEA-K 340
GW N Y + QQ +AA + RA + V
Sbjct: 1835 KRTGWLVEIVN------------YNVEN------------QQYVAAGDLRALDTVTNVLN 1870
Query: 341 KRKARRLKQAKEEAQEDIEKYRQEREKIF 369
K +++ + + +E+ +F
Sbjct: 1871 FIKLQKIDIIELQKSLSLEEV---EGHLF 1896
Score = 33.9 bits (77), Expect = 0.11
Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 42/175 (24%)
Query: 234 HDHTEQVKMEDAPKSL----------ISKGILRTDFSKLAVVLKLGAKTNKSIIWCQNSM 283
+ TE +D P + +S + + + VL L ++ N
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND- 100
Query: 284 ARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEAKKRK 343
I + A L L T I+ + A R K KK
Sbjct: 101 --IHALAA-----KL---------LQENDTTLVKTKELIKNYITA--RIMAKRPFDKKSN 142
Query: 344 ARRLKQAKEEA---------QEDIEKYRQEREKIFREYEAKVSHCNIVLIIKAAA 389
+ + E Q + + Y +E +++ Y V LI +A
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD----LIKFSAE 193
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia
coli} SCOP: f.23.21.1
Length = 61
Score = 32.5 bits (74), Expect = 0.019
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376
QL A+ A + +A KR+++ L +AK EA QER KI + +A++
Sbjct: 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEA-------EQERTKIVAQAQAEI 48
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP
synthesis, inner membrane, cell membrane, CF(0),
hydrogen ION transpor transport; NMR {Escherichia coli}
Length = 53
Score = 31.3 bits (71), Expect = 0.047
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 326 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360
LA+ +RA + + AK +LK+AK EAQ IE+
Sbjct: 15 LASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQ 49
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 33.4 bits (76), Expect = 0.076
Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 321 GIQQLLA-----AEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367
G + ++ AE++ + EA+++ + ++A+ A+ E + +
Sbjct: 3 GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKT 54
Score = 31.1 bits (70), Expect = 0.37
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
E E EA+++ L +A+++A++ E+ R+ E +
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRR 51
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 32.6 bits (73), Expect = 0.13
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 329 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367
KR E A +K + ++AK++ +E ++ ++ EK
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 148
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 33.2 bits (75), Expect = 0.18
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 323 QQLLAAEKRAAEKVAEAKKRKA-RRLKQAKEEAQEDIEKYRQEREKIFREYEAKVSH 378
+ K AE AEA + + + QAK +AQ + E E++ + E ++ +
Sbjct: 716 VESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIY 772
Score = 32.9 bits (74), Expect = 0.23
Identities = 13/49 (26%), Positives = 17/49 (34%)
Query: 327 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
A + R EA AK EA+ E R E E + + K
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 30.3 bits (68), Expect = 0.30
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 374
+++L E+R +++ + +K + + + E+ Q + E+ QE + REY
Sbjct: 13 LKELALEEERLIQELEDVEKNRK-VVAENLEKVQAEAERLDQEEAQYQREYSE 64
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.0 bits (73), Expect = 0.32
Identities = 6/56 (10%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQ------AKEEAQEDIEKYRQEREKIFRE 371
+ + + EA+ R + +++ K +++R+++F +
Sbjct: 216 PGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEK 271
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 31.4 bits (71), Expect = 0.44
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 314 RPPVVSL------GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER-- 365
RPPV+++ G+ +L +R + + A + ARR Q + + + +R
Sbjct: 257 RPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVW 316
Query: 366 -----EKIFREYEAKVS 377
K+ E E +V
Sbjct: 317 SNPTVRKVRSELERRVR 333
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 31.3 bits (71), Expect = 0.45
Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 314 RPPVVSL------GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKY------ 361
+P V++ GI ++ A + + + + R +Q+ E ++ E+
Sbjct: 234 QPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNHLF 293
Query: 362 -RQEREKIFREYEAKV 376
++ ++ +R+ V
Sbjct: 294 ANEDFDRYYRQTLLAV 309
>2joz_A Hypothetical protein YXEF; structure, GFT, NESG, lipoprotein,
structural genomics, PSI-2, protein structure
initiative; NMR {Bacillus subtilis} SCOP: b.60.1.1
Length = 135
Score = 30.2 bits (67), Expect = 0.48
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 191 GKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV----IARKPITKKHDHTEQVKMEDAP 246
G+ P P D V S+ + T D V E ++ G+V +A K I++ D + +++
Sbjct: 24 GRAPGPTDGVKSATVTFTEDEVVETEVMEGRGEVQLPFMAYKVISQSTDGSIEIQYLGP- 82
Query: 247 KSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQN----SMARIKSTAG 291
+ L LK G N ++IW QN +M RI+S G
Sbjct: 83 ------------YYPLKSTLKRG--ENGTLIWEQNGQRKTMTRIESKTG 117
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 31.4 bits (71), Expect = 0.50
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 18/104 (17%)
Query: 291 GWNRTRSLALTRQTRYAL-----PTKPTRPPVVSL------GIQQLLAAEKRAAEKVAEA 339
G + + + AL ++ +P V+ + GI ++ K + + +
Sbjct: 224 GDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLAS 283
Query: 340 KKRKARRLKQAKEEAQEDIEKYRQER-------EKIFREYEAKV 376
+ A+R KQ K I++ E + E KV
Sbjct: 284 GELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKV 327
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 31.3 bits (71), Expect = 0.57
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 314 RPPVVSL------GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER-- 365
PPVV++ G+ L + + K+ + +R +Q + + + +R
Sbjct: 234 TPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHERLHQRLV 293
Query: 366 -----EKIFREYEAKV 376
+ E E V
Sbjct: 294 GSAEVRQATAEAERAV 309
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 28.7 bits (65), Expect = 0.79
Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKE---EAQEDIEKYRQEREKIFREYE 373
Q + E++ E + A+ ++ + + ++ + R + ++ +YE
Sbjct: 16 QGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE 68
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.0 bits (70), Expect = 0.80
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAK--EEAQEDIEKYRQEREKIFREYEAKVS 377
+ L EK K K + E + EK RQE EKI R+ E + S
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Score = 30.6 bits (69), Expect = 1.2
Identities = 8/52 (15%), Positives = 24/52 (46%)
Query: 326 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVS 377
+ A E+ ++ + + ++++Q + +E +E+ R+K+ E
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Score = 27.9 bits (62), Expect = 7.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 329 EKRAAEKVAEAKKRKARRLKQA-KEEAQEDIEKYRQEREKIFREYEAKV 376
+ EK +K +A A EE + + +QE E+I E EA++
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 31.0 bits (70), Expect = 0.80
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 324 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF 369
+L AA +R+ ++ RR+ +E+ + Y E +
Sbjct: 373 ELDAAIERSLTRLDGDAVLANRRMLNLADESPDGFRAYMAEFALMQ 418
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 29.5 bits (66), Expect = 1.4
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 328 AEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVS 377
E + EA+ + ++A+E+A+ ++ + +Y A +
Sbjct: 11 VEAEIQALLQEAEAKAEAVKREAEEKAKALLQ---ARERALEAQYRAALR 57
Score = 27.6 bits (61), Expect = 6.0
Identities = 5/39 (12%), Positives = 18/39 (46%)
Query: 338 EAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV 376
E + L++A+ +A+ + ++ + + + E +
Sbjct: 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERAL 48
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 29.5 bits (67), Expect = 2.2
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 322 IQQLLAAEKRAAEKVAEAKKRKARR---------LKQAKEEAQEDIEKYRQEREKIFREY 372
+ ++L + K+ E + + R ++ E E + K R+ ++I E
Sbjct: 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRI-GEL 88
Query: 373 EAKVS 377
E +V
Sbjct: 89 ENEVE 93
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 28.0 bits (62), Expect = 2.3
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 334 EKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 366
+ AE + + K+A EEA + ++ +
Sbjct: 75 KSFAEGQTSINKTFKKALEEAAKRFQELKASGP 107
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.5 bits (67), Expect = 2.3
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI 368
I+ L ++ E V + Q + Q + R+ R+++
Sbjct: 86 IRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQL 132
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 27.2 bits (61), Expect = 2.5
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKE---EAQEDIEKYRQEREKIFREYE 373
+ QL K+ + + AR ++ E + ++ + R ++ EY+
Sbjct: 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 59
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic
binding protein, pectin degradation, trigalacturonic
acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB:
2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Length = 408
Score = 29.0 bits (65), Expect = 2.6
Identities = 5/60 (8%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 306 YALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEAKK--RKARRLKQAKEEAQEDIEKYRQ 363
AL Q+++ A + + +K ++ + ++ +++ +
Sbjct: 351 MALELPHKMTTSPYFDDPQIVSLFGDAIQYIDYGQKTVQET--AEYFNKQGDRILKRAMR 408
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.7
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 22/51 (43%)
Query: 154 DKTEINTRDIDNKLKFYHVKTNNMLHKNVELVCEESLGKLPAPIDSVMSSI 204
+K + + + LK Y ++S AP ++ +++
Sbjct: 18 EKQAL--KKLQASLKLY---------------ADDS-----APALAIKATM 46
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 28.4 bits (62), Expect = 3.7
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK 375
+ L + E + A + +K AKE+ + +E ++ RE F +
Sbjct: 67 KHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLER 119
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein;
HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Length = 35
Score = 25.5 bits (55), Expect = 4.3
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 335 KVAEAKKRKARRLKQAKEEAQEDIEKYRQE 364
++ +AKK A +K+AKEE E+I+K +QE
Sbjct: 3 EIEQAKKEIAYLIKKAKEEILEEIKKAKQE 32
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 4.3
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 322 IQQLLAAEKRAAEKVAEAKKRKARR---------LKQAKEEAQEDIEKYRQEREKIFREY 372
+ +++A K + + + + +AKE+A++ I + + + +E
Sbjct: 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEK-KEI 90
Query: 373 EAKVS 377
K +
Sbjct: 91 IEKEA 95
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein,
periplasmic-binding protein, maltose, SUG binding
protein; 2.20A {Xanthomonas axonopodis PV}
Length = 458
Score = 28.2 bits (63), Expect = 4.7
Identities = 7/55 (12%), Positives = 21/55 (38%)
Query: 313 TRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK 367
+ L ++++ + E+V + +++ + E + K R E+
Sbjct: 368 VKATPKVLEWERIVQEMRLVTERVVRGGQSHDAAVQELDQRVDEILAKRRWIFEQ 422
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 28.1 bits (63), Expect = 5.5
Identities = 10/106 (9%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Query: 280 QNSMARIKSTAGWNRTRSLALTRQTRYALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEA 339
++++A +K T +T + A T+ +S + E+
Sbjct: 68 ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGE 127
Query: 340 KKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKV-SHCNIVLI 384
+ + ++ + + + ++ + H + V++
Sbjct: 128 RNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVL 173
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 27.5 bits (62), Expect = 9.0
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 313 TRPPVVSLGIQQLLAAEKRAAEKVAEAKKRKARR---------LKQAKEEAQEDIEKYRQ 363
TR + + ++L +KR E + + ++ R LK+ ++ E + ++
Sbjct: 20 TRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKE 79
Query: 364 EREKI 368
+E+I
Sbjct: 80 LKEEI 84
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 27.7 bits (61), Expect = 9.0
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 30 SHNGNKVQSNMIKITNIEIALIQDDLKHNDTIIQ-IANSLDILDESMRNVFDHTKKSI 86
H+ + S+MI+I I++ L ++ ++ I L I E + + F+ ++
Sbjct: 2 GHHHHH-HSHMIRINEIKLPLDHEE----GALLDAITKKLGIPAEKVIS-FNVFRRGY 53
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 27.1 bits (59), Expect = 9.8
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 285 RIKSTAGWNRTRSLALTRQ--TRYALPTKPTRPPVVSLGIQQLLAAEKRAAEKVAEA-KK 341
IK G + L ++ R T + IQ+L+ E+ +KV +A K
Sbjct: 140 NIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDRTKCPKIQRLITPERILRKKVYKAEKT 199
Query: 342 RKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVS 377
++ + AKEE ++ + +++++R A V
Sbjct: 200 QRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVV 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.365
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,641,856
Number of extensions: 329092
Number of successful extensions: 1148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 110
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)