RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2197
         (394 letters)



>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
           {Escherichia coli [TaxId: 562]}
          Length = 61

 Score = 32.3 bits (74), Expect = 0.008
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK 360
            QL  A+  A   + +A KR+++ L +AK EA+++  K
Sbjct: 2   DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTK 39



 Score = 26.9 bits (60), Expect = 0.84
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 334 EKVAEAKKRKARRLKQAKEEAQEDIE----KYRQEREKI 368
           +++ +AK      ++QA +   + ++    +  QER KI
Sbjct: 2   DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKI 40



 Score = 26.1 bits (58), Expect = 1.3
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 328 AEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371
           A KR ++ + EAK    +   +   +AQ +IE    ER++   E
Sbjct: 18  ANKRRSQILDEAKAEAEQERTKIVAQAQAEIE---AERKRAREE 58



 Score = 25.3 bits (56), Expect = 2.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 347 LKQAKEEAQEDIEKYRQEREKIFREYEAK 375
           LK+AK EAQ  IE+  + R +I  E +A+
Sbjct: 4   LKKAKAEAQVIIEQANKRRSQILDEAKAE 32


>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus
           subtilis [TaxId: 1423]}
          Length = 126

 Score = 33.2 bits (75), Expect = 0.018
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 23/109 (21%)

Query: 191 GKLPAPIDSVMSSILFNTSDNVYEKYIIVHPGQV----IARKPITKKHDHTEQVKMEDAP 246
           G+ P P D V S+ +  T D V E  ++   G+V    +A K I++  D + +++     
Sbjct: 23  GRAPGPTDGVKSATVTFTEDEVVETEVMEGRGEVQLPFMAYKVISQSTDGSIEIQYLGPY 82

Query: 247 KSLISKGILRTDFSKLAVVLKLGAKTNKSIIWCQN----SMARIKSTAG 291
             L S              LK G   N ++IW QN    +M RI+S  G
Sbjct: 83  YPLKS-------------TLKRG--ENGTLIWEQNGQRKTMTRIESKTG 116


>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 160

 Score = 29.3 bits (66), Expect = 0.47
 Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 321 GIQQLLAAEKRAAEKVAE-AKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKVS 377
           G++ +  AE++  + + +  ++   R L Q      E+ +K  +  +++F++   K S
Sbjct: 18  GLRDIYYAEQQITKALPKMIEQATNRDLSQGLTSHLEETQKQIERLDQVFKKLGQKPS 75


>d1i0va_ d.1.1.4 (A:) RNase T1 {Aspergillus oryzae [TaxId: 5062]}
          Length = 104

 Score = 27.5 bits (61), Expect = 1.2
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 100 SSVVCANIEKLKNIQKSVTIVSKSKYPYPYNGNYSVHIQHEHVTPMYKCPLL 151
           SS V         + +    V  + YP+ YN NY         +P Y+ P+L
Sbjct: 13  SSDVSTAQAAGYKLHEDGETVGSNSYPHKYN-NYE-GFDFSVSSPYYEWPIL 62


>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B
           [TaxId: 5061]}
          Length = 359

 Score = 27.8 bits (61), Expect = 2.3
 Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 15/134 (11%)

Query: 12  SSDVQIEEVTVEGGLNNSSHNGNKVQSNMIKITNIEIALIQDDLKHNDTIIQIANSLDIL 71
           +S+  I     +G +            N+I I NI +  I          I + +S  + 
Sbjct: 107 NSNKSIVGQGTKGVIKGKGLRVVSGAKNVI-IQNIAVTDINPKYVWGGDAITVDDSDLVW 165

Query: 72  DESMRNVFDHTKKSIWRTRQCLHAIEKRSSVV----CANIEKLKNIQKSVTIVSKSKYPY 127
                   DH   +    RQ +       + V         +      +          Y
Sbjct: 166 -------IDHVTTA-RIGRQHIVLGTSADNRVTISYSLIDGRSDY--SATCNGHHYWGVY 215

Query: 128 PYNGNYSVHIQHEH 141
               N  V ++  +
Sbjct: 216 LDGSNDMVTLKGNY 229


>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
           malonyl-CoA ACP transacylase {Streptomyces coelicolor
           A3(2) [TaxId: 100226]}
          Length = 62

 Score = 25.1 bits (55), Expect = 3.7
 Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 3/29 (10%)

Query: 323 QQLLAAEKRAAEKVAEAKK---RKARRLK 348
           Q + A        + E K    RK   LK
Sbjct: 34  QIVAAGTMEQLAALNEDKPEGVRKVVPLK 62


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 27.1 bits (59), Expect = 3.7
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDI-----EKYRQEREKIFREYEAK 375
           ++     ++A E++ EA K+     KQ   +    +        +++ E I++E E+K
Sbjct: 309 EEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYE-IYKEKESK 365


>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 68

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 76  RNVFDHTK--KSIWRTRQCLHAIEKRSSVVCANIEKLKN 112
            N +  +K    I   R+C     K  SVVC+  EK + 
Sbjct: 20  ANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKEEE 58


>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 138

 Score = 26.0 bits (57), Expect = 5.0
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query: 323 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE 366
           ++ LA +  + ++  EA         Q K++  E++ K ++ +E
Sbjct: 95  KEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138


>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 74

 Score = 25.1 bits (55), Expect = 5.1
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 322 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE 371
           I  LL      A+ + + KK     ++  K E +  + +   E  +IF +
Sbjct: 17  IISLLKKRLEIAQAIGKIKKELNLPIEDRKREEE--VLRRAGEFREIFEK 64


>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein
           Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 89

 Score = 25.0 bits (55), Expect = 5.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 331 RAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE 364
           R      + KK+    +++  EEA+E +E+   E
Sbjct: 20  RVPRLPPDEKKQMVANVEKQLEEARELLEQMDLE 53


>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
           {Clostridium sticklandii [TaxId: 1511]}
          Length = 516

 Score = 26.7 bits (59), Expect = 6.3
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 322 IQQLLAAEKRAAEKVAEAKKRKARR-LKQAKEEAQEDIEKYRQEREKIFREY 372
           I Q ++A +    K+      + +       +E  E I+  R  RE  F EY
Sbjct: 94  IAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRESRFEEY 145


>d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 127

 Score = 25.6 bits (55), Expect = 7.1
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 40 MIKITNIEIALIQDDLKHNDTI 61
          M KI   EI + +  LK     
Sbjct: 2  MFKIEAAEIVVARLPLKFRFET 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,361,294
Number of extensions: 61763
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 35
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)