BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2198
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ---------------- 86
+ST S + DS+L GG+ + +TE +G G GKTQ+ Q C++LQ
Sbjct: 22 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 81
Query: 87 VSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQS 145
V+QP +YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 82 VAQPK--AVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIE 138
Query: 146 GFIE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTN 202
I+ N + ++VIDS+ FRN Y K +R + L++L+ VV+ TN
Sbjct: 139 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 198
Query: 203 QVTS 206
QV++
Sbjct: 199 QVSA 202
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ---------------- 86
+ST S + DS+L GG+ + +TE +G G GKTQ+ Q C++LQ
Sbjct: 24 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 83
Query: 87 VSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQS 145
V+QP +YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 84 VAQPK--AVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIE 140
Query: 146 GFIE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTN 202
I+ N + ++VIDS+ FRN Y K +R + L++L+ VV+ TN
Sbjct: 141 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 200
Query: 203 QVTS 206
QV++
Sbjct: 201 QVSA 204
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ---------------- 86
+ST S + DS+L GG+ + +TE +G G GKTQ+ Q C++LQ
Sbjct: 80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 139
Query: 87 VSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQS 145
V+QP +YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 140 VAQPK--AVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIE 196
Query: 146 GFIE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTN 202
I+ N + ++VIDS+ FRN Y K +R + L++L+ VV+ TN
Sbjct: 197 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256
Query: 203 QVTS 206
QV++
Sbjct: 257 QVSA 260
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ---------------- 86
+ST S + DS+L GG+ + +TE +G G GKTQ+ Q C++LQ
Sbjct: 77 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 136
Query: 87 VSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQS 145
V+QP +YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 137 VAQPK--AVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIE 193
Query: 146 GFIE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTN 202
I+ N + ++VIDS+ FRN Y K +R + L++L+ VV+ TN
Sbjct: 194 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 253
Query: 203 QVTS 206
QV++
Sbjct: 254 QVSA 257
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ---------------- 86
+ST S + DS+L GG+ + +TE +G G GKTQ+ Q C++LQ
Sbjct: 80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 139
Query: 87 VSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQS 145
V+QP +YI T+ F R+ Q+ E + + D F+ Y D++ E
Sbjct: 140 VAQPK--AVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIE 196
Query: 146 GFIE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTN 202
I+ N + ++VIDS+ FRN Y K +R + L++L+ VV+ TN
Sbjct: 197 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256
Query: 203 QVTS 206
QV++
Sbjct: 257 QVSA 260
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP------------ 90
+STGS + D++L GGI + +TE +G G GKTQ+ Q C++LQ+ +
Sbjct: 80 LSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFADLEGVVEEE 139
Query: 91 --HKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQSGF 147
+YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 140 LEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIEDL 198
Query: 148 IE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
I+ N + +++IDS+ FRN + K +R + L++L+ + +V+ TNQV
Sbjct: 199 IKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLYNCIVLVTNQV 258
Query: 205 TS 206
+
Sbjct: 259 AA 260
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 28 AFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV 87
A +V K +++ +I STGS+ D +L GGI +TE G G GKTQLC Q+ +++Q+
Sbjct: 76 ALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 88 SQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF------ITHCYEFID 136
P KG L YI TE F R+ + + L + I+ H +D
Sbjct: 134 P-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVD 192
Query: 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHR 195
+ L S+ I+ +IV+DS+ FR Y + R + H L L+ +
Sbjct: 193 DLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYD 248
Query: 196 IVVICTNQVTSA--MTHSDKNIPALGLT 221
I VI TNQV + M + D + G T
Sbjct: 249 IAVIITNQVMARPDMFYGDPTVAVGGHT 276
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 19/191 (9%)
Query: 28 AFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV 87
A +V K ++ +I STGS+ D +L GGI TE G G GKTQLC Q+ +++Q+
Sbjct: 76 ALEVKKERXNVKKI--STGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 88 SQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF------ITHCYEFID 136
P KG L YI TE F R+ + L + I+ H +D
Sbjct: 134 P-PEKGGLSGKAVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVD 192
Query: 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHR 195
+ L S+ I+ +IV+DS+ FR Y + R + H L L+ +
Sbjct: 193 DLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYD 248
Query: 196 IVVICTNQVTS 206
I VI TNQV +
Sbjct: 249 IAVIITNQVXA 259
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV----SQPHKGVLYIC 98
++TGS++FD +L GGI + ITE G GKTQL +C++ Q+ P +++I
Sbjct: 104 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCY------EFID-LKRTLESQSGFIENK 151
TE+ F RL + + + D + Y E +D + ++G +
Sbjct: 164 TENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK-- 221
Query: 152 VGMIVIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+++IDSI +FR ++ + +R + + L ++S ++ + V TNQ+T+
Sbjct: 222 --LLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV----SQPHKGVLYIC 98
++TGS++FD +L GGI + ITE G GKTQL +C++ Q+ P +++I
Sbjct: 104 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCY------EFID-LKRTLESQSGFIENK 151
TE+ F RL + + + D + Y E +D + ++G +
Sbjct: 164 TENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDYVAAKFHEEAGIFK-- 221
Query: 152 VGMIVIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+++IDSI +FR ++ + +R + + L ++S ++ + V TNQ+T+
Sbjct: 222 --LLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
++STG++ DS+L GG G +T++ G GKT L LQ L K V Y+ TE
Sbjct: 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEG 55
Query: 102 VFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIA 161
F RL Q+ E L + + + +F + +R + S +++ ++V+DSI
Sbjct: 56 GFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115
Query: 162 GIFRNTYAEDKYVQRAHDMRDLAHYLHEL---SIKHRIVVICTNQV 204
+R AE+ R+ + +L+ L L + KH I VI NQV
Sbjct: 116 AHYR---AEE---NRSGLIAELSRQLQVLLWIARKHNIPVIVINQV 155
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-----VLYI 97
+STGS+ D +L GGI ITE+ G G GKTQL + + +Q+ P +G V++I
Sbjct: 7 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-PEEGGLNGSVIWI 65
Query: 98 CTESVFPTARLAQLCELSPLAKPKCSDKIFITHCY----EFIDLKRTLESQSGFI--ENK 151
TE+ F R+ ++ + L + I++ + + + +++ + + +
Sbjct: 66 DTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRP 125
Query: 152 VGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210
V ++++DS+ FR+ Y +R + LH L+ + I V TNQV + H
Sbjct: 126 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGH 185
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 13/176 (7%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-----VLYI 97
+STGS+ D +L GGI ITE+ G G GKTQL + + +Q+ P +G V++I
Sbjct: 113 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVXVQLP-PEEGGLNGSVIWI 171
Query: 98 CTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI------ENK 151
TE+ F R+ ++ + L + I++ + ++ I +
Sbjct: 172 DTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKELLNTDRP 231
Query: 152 VGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
V ++++DS+ FR+ Y +R + LH L+ + I V TNQV +
Sbjct: 232 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I ++TGS+ D++L GG+ G ITEL G GK+QLC + ++ Q+ G LY
Sbjct: 79 ICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 138
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMI 155
I TE F RL + + L + + Y R L++ + + E++ +I
Sbjct: 139 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 198
Query: 156 VIDSIAGIFRNTYA 169
V+DS+ ++R ++
Sbjct: 199 VVDSVMALYRTDFS 212
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 13/180 (7%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-----VLYI 97
+STGS+ D +L GGI ITE+ G G GKTQL + + +Q+ P +G V++I
Sbjct: 7 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-PEEGGLNGSVMWI 65
Query: 98 CTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI------ENK 151
TE+ F R+ ++ + L + I + ++ I +
Sbjct: 66 DTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMIKELLNTDRP 125
Query: 152 VGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210
V ++++DS+ FR+ Y +R + LH L+ + I V TNQV + H
Sbjct: 126 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGH 185
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I ++TGS+ D++L GG+ G ITEL G GK+QLC + ++ Q+ G LY
Sbjct: 158 ICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 217
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMI 155
I TE F RL + + L + + Y R L++ + + E++ +I
Sbjct: 218 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 277
Query: 156 VIDSIAGIFRNTYA 169
V+DS+ ++R ++
Sbjct: 278 VVDSVMALYRTDFS 291
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I ++TGS++ D +L+GGI G ITE G GKTQ+C + ++ Q+ G Y
Sbjct: 4 IQITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXY 63
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQSGFIENKVGMI 155
I TE F RL + E L+ D + + + L ++ + +E++ ++
Sbjct: 64 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAXXVESRYALL 123
Query: 156 VIDSIAGIFRNTYA 169
++DS ++R Y+
Sbjct: 124 IVDSATALYRTDYS 137
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 35/200 (17%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQ-MCLSLQVSQPHKGVLYICTE- 100
+STG FD +++GGI G L+G G GKT L + L+ P +Y+ TE
Sbjct: 5 LSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDP---CIYVTTEE 61
Query: 101 ---SVFPTARL----------AQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGF 147
S+ A+ +L + L K K + E + + + +E++
Sbjct: 62 SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEEL-VNKVIEAKQKL 120
Query: 148 IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207
K +VIDS++ +F + A R +++YL + K + T+Q A
Sbjct: 121 GYGK-ARLVIDSVSALFLDKPAM---------ARKISYYLKRVLNKWNFTIYATSQY--A 168
Query: 208 MTHSDKNIPALGLTYERAHD 227
+T S A G E D
Sbjct: 169 ITTSQ----AFGFGVEHVAD 184
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78
+ + VS+G + D + GG I +GA+G GKT L
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 298
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 AES 320
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 AES 320
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 66
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 246 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 304
Query: 99 TES 101
ES
Sbjct: 305 EES 307
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKT-LLVSRFVENACANKERAILFAY 317
Query: 99 TES 101
ES
Sbjct: 318 EES 320
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With
Atp-Gamma-S"
Length = 366
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 42 VVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
VVSTGS D L GGI G ITE+ G GKT L L + Q
Sbjct: 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ 99
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLS-LQVSQPHKGVLYICTES 101
V TG D IL GGI + LSG G GKT Q + L++ +P +Y+ E
Sbjct: 5 VKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPG---IYVALEE 61
Query: 102 VFPTARLAQLCELSPLAKPKCSDKIF 127
P + + KP +F
Sbjct: 62 -HPVQVRQNMAQFGWDVKPYEEKGMF 86
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 15 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 59
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 1063 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1107
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 15 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 59
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 1062 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 1408 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 1756 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1800
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 15 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 59
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 1063 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1107
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 1412 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1456
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 40 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 84
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed
Helical Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed
Helical Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 VSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86
+STGS D L GG+ G I E+ G GKT L LQ+ + Q
Sbjct: 44 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF 103
+ G I + GASGCGKT L CL+ QP G + + +++F
Sbjct: 27 LDPGEILFIIGASGCGKTTLL--RCLA-GFEQPDSGEISLSGKTIF 69
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCL 83
+KF+S + I + + GA+GCGKT Q L
Sbjct: 63 KKFESEILEAISQNSVVIIRGATGCGKTTQVPQFIL 98
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 54 LKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE------------- 100
L ++ G I + G +GCGK+ L + L L + +P +G + +
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTL---LDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFA 80
Query: 101 -SVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDL----KRTLESQSG 146
SV + + ++ AKPK D ++++L KR S SG
Sbjct: 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,671,214
Number of Sequences: 62578
Number of extensions: 280516
Number of successful extensions: 774
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 90
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)