BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2198
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43542|XRCC3_HUMAN DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1
Length = 346
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 27/222 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+S G D++L+GG+ GITEL+G S GKTQL LQ+CL++Q + H G+ +YIC
Sbjct: 82 LSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYIC 141
Query: 99 TESVFPTARLAQLCELSP----------LAKPKCSDKIFITHCYEFIDLKRTLESQSGFI 148
TE FP RL QL P L K + +IFI H + L + + +
Sbjct: 142 TEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVL 201
Query: 149 ENK--VGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
++ ++VIDS+A FR + RA ++ L L ELS + V+C NQVT
Sbjct: 202 LSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTE 261
Query: 207 AMTHS----------DKNI-PALGLTYERAHDMRDLAHYLHE 237
AM D+ + PALG+T+ +R LA L E
Sbjct: 262 AMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLRE 303
>sp|Q08DH8|XRCC3_BOVIN DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE=2 SV=1
Length = 341
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+S G D++L+GG+ GITEL+G S GKTQL LQ+CL++Q+ H G+ +Y+C
Sbjct: 82 LSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQLPPRHGGLGAGAVYVC 141
Query: 99 TESVFPTARLAQLCELSP----------LAKPKCSDKIFITHCYEFIDLKRTLESQSGFI 148
TE FP+ RL QL ++K + +IFI H + L + + + +
Sbjct: 142 TEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAADVDTLLQCVREKVPVL 201
Query: 149 --ENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
++VIDS+A FR + RA + L L LS R V+C NQVT
Sbjct: 202 LARGMARLVVIDSVAAPFRCEFDGAALALRAQRLLALGAELRRLSCAFRSPVLCVNQVTE 261
Query: 207 AMTHSD------KNIPALGLTYERAHDMRDLA 232
A+ D PALG+T+ +R LA
Sbjct: 262 AVEEQDLVAGPPGMSPALGITWANQLLVRLLA 293
>sp|Q9CXE6|XRCC3_MOUSE DNA repair protein XRCC3 OS=Mus musculus GN=Xrcc3 PE=2 SV=1
Length = 349
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 27/222 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+S G D L GG+ GIT L+G S GKTQL LQ+CL++Q + + G+ +YIC
Sbjct: 82 LSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEAGAVYIC 141
Query: 99 TESVFPTARLAQLCEL-------SP---LAKPKCSDKIFITHCYEFIDLKRTLESQSGFI 148
TE FP+ RL QL +P + K + S+ IFI H + L + + +
Sbjct: 142 TEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAADVDTLLECVSKKVPIL 201
Query: 149 ENK--VGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
++ ++V+DSIA FR + RA + L L LS R V+C NQVT
Sbjct: 202 LSRGMARLVVVDSIAAPFRCEFHLQASAIRAKLLLSLGATLRRLSSTFRSPVLCINQVTD 261
Query: 207 ----------AMTHSDKNI-PALGLTYERAHDMRDLAHYLHE 237
++ S++ + PALG+T+ MR + HE
Sbjct: 262 MVEDQQSVSRSLGASEERLSPALGITWANQLLMRLMVDRTHE 303
>sp|Q9UUL2|RAD57_SCHPO DNA repair protein rhp57 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp57 PE=1 SV=1
Length = 354
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 115/268 (42%), Gaps = 60/268 (22%)
Query: 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP----HKG 93
+T ++TG K D L GGI G +TE+ G SG GK+Q C+Q+CL +Q+ +K
Sbjct: 70 VTSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKA 129
Query: 94 VLYICTESVFPTARLAQLCELSPLAKPKC----------SDKIFITHCYEFIDLKRTLES 143
++I TES T RL +L P PK D+++ C + + ++
Sbjct: 130 AVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQEHIIQY 189
Query: 144 QSG--FIENKVGMIVIDSIAGIFRNTYAEDKY-------------VQRAHDMRDLAHYLH 188
Q F +K+G++++DS+A +R AE +Y +R + + LA L
Sbjct: 190 QLPILFNRDKIGLVILDSVASNYR---AELRYNRSKSHFRDLDNIAKRGNQLGKLAMTLR 246
Query: 189 ELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEISIKHWIVVIC 248
L+ +H V+ NQV+ + I L Y+ W
Sbjct: 247 TLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQ-----------------SQWF---- 285
Query: 249 TNQVTSAMTHSDKN--IPALGLSWSNLI 274
S +D N IP+LGL W+N I
Sbjct: 286 -----SGWDDTDPNPKIPSLGLVWTNNI 308
>sp|Q9FKM5|XRCC3_ARATH DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3
PE=1 SV=1
Length = 304
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 116/251 (46%), Gaps = 49/251 (19%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
++TG E D L+GGI +TE+ SGCGKTQLCLQ+ L Q+ H G+ LY+
Sbjct: 21 LTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYLH 80
Query: 99 TESVFPTARLAQLCELSPLAKPKC--------SDKIFITHCYEFIDLKRTLESQSGFIEN 150
+E FP RL QL + P D +F+ + + L + GF+ N
Sbjct: 81 SEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVGN 140
Query: 151 K-----VGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQ 203
+ +IV+DS+A +FR+ + +R+ ++ L +L+ K + ++ TNQ
Sbjct: 141 SKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITNQ 200
Query: 204 VTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEISIKHWIVVICTNQVTSAMTHSDKNI 263
VT + SD GL+ R ++R YL+ + + +
Sbjct: 201 VTDLVETSD------GLSGLRIGNLR----YLY--------------------SSGRRVV 230
Query: 264 PALGLSWSNLI 274
P+LGL+W+N +
Sbjct: 231 PSLGLAWANCV 241
>sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog OS=Drosophila melanogaster
GN=spn-A PE=2 SV=1
Length = 336
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
+ +STGS++ D +L GGI G ITE+ G CGKTQLC + ++ Q+ KG +Y
Sbjct: 97 VQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMY 156
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMI 155
I TE+ F RLA + + L + + D + T + + ++ +G + E++ ++
Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 216
Query: 156 VIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208
++DS ++R+ Y + R + + L L+ + + V+ TNQVT+++
Sbjct: 217 IVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASL 270
>sp|Q40134|RAD51_SOLLC DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51
PE=2 SV=1
Length = 342
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I +++GS++ D IL+GGI G ITE+ G CGKTQLC +C++ Q+ G +Y
Sbjct: 103 IQITSGSKELDKILEGGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMY 162
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKR-TLESQSGFIENKVGMI 155
I E F RL Q+ + L P + + Y R LE+ S +E + ++
Sbjct: 163 IDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALM 222
Query: 156 VIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHS 211
++DS ++R ++ + R + L +L+ + + V+ TNQV + + S
Sbjct: 223 IVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGS 279
>sp|B1YC14|RADA_PYRNV DNA repair and recombination protein RadA OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=radA PE=3 SV=1
Length = 330
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+STG + D +L GGI +TE++G G GKTQLC Q+ + +Q+ + G+ +YI
Sbjct: 99 ISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYID 158
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI--ENKVGMIV 156
TE+ F R+ Q+ + L + + IF Y D + L Q+ I +N V ++V
Sbjct: 159 TENTFRPERIMQIAKARGLDPDQALNNIFYARAYSS-DHQMILVDQAKSIIKQNNVALLV 217
Query: 157 IDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS--------A 207
+DS+ FR+ + + +R + L L+ + + V+ TNQV +
Sbjct: 218 VDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNP 277
Query: 208 MTHSDKNIPALGLTY 222
+ + NI A G TY
Sbjct: 278 LRPAGGNILAHGATY 292
>sp|Q9LQQ2|RA51D_ARATH DNA repair protein RAD51 homolog 4 OS=Arabidopsis thaliana
GN=RAD51D PE=2 SV=2
Length = 322
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 13/198 (6%)
Query: 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTE 100
+STG ++ DS+L+GG G +TEL G S GKTQ C+Q S V++ H G VLY+ T
Sbjct: 88 TLSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAAS--VAENHLGRVLYLDTG 145
Query: 101 SVFPTARLAQ-LCELSPLA-KPKCSDKIFITHCYEFI-------DLKRTLESQSGFIENK 151
+ F R+AQ +C S K +I Y+ DL+ TL Q E++
Sbjct: 146 NSFSARRIAQFICSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESR 205
Query: 152 VGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHS 211
+ ++V+DSI+ + RA M + + L +L+ +H I ++ TN A
Sbjct: 206 LRLLVVDSISSLITPILGGSGSQGRAL-MVAIGYLLKKLAHEHSIAILVTNHTVGAGGEG 264
Query: 212 DKNIPALGLTYERAHDMR 229
K PALG T++ +R
Sbjct: 265 GKTKPALGETWKSIPHVR 282
>sp|Q9Y8J4|RADA_DESAM DNA repair and recombination protein RadA OS=Desulfurococcus
amylolyticus GN=radA PE=3 SV=1
Length = 328
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVL-----YI 97
++TGS+ D +L GG+ ITE G G GKTQ+C Q+ +++Q++ P KG L YI
Sbjct: 93 ITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLT-PEKGGLNGRAVYI 151
Query: 98 CTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMIV 156
TE F R+ + L K D I+ Y ++ F+ +N V +++
Sbjct: 152 DTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVI 211
Query: 157 IDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+DS+ FR Y + +R + H L L+ + + V+ TNQV +
Sbjct: 212 LDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMA 262
>sp|B8D610|RADA_DESK1 DNA repair and recombination protein RadA OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3
SV=1
Length = 328
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVL-----YI 97
++TGS+ D +L GG+ ITE G G GKTQ+C Q+ +++Q++ P KG L YI
Sbjct: 93 ITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLT-PEKGGLNGRAVYI 151
Query: 98 CTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMIV 156
TE F R+ + L K D I+ Y ++ F+ +N V +++
Sbjct: 152 DTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVI 211
Query: 157 IDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+DS+ FR Y + +R + H L L+ + + V+ TNQV +
Sbjct: 212 LDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMA 262
>sp|O93748|RADA_CENSY DNA repair and recombination protein RadA OS=Cenarchaeum symbiosum
(strain A) GN=radA PE=3 SV=2
Length = 398
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Query: 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH----KGVLYI 97
+++TG++ D++L GGI ITE+ G G GKTQ C MC++ Q + GV+YI
Sbjct: 88 MITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMYI 147
Query: 98 CTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMIV 156
TE F R+ + + + + K D I + Y LE I E + +I+
Sbjct: 148 DTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQEENIKLII 207
Query: 157 IDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207
DS G+FR+ Y R + L ++ + V+ TNQV+S+
Sbjct: 208 SDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSS 259
>sp|Q9UWR5|RADA_PYRIL DNA repair and recombination protein RadA OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2
Length = 330
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 16/195 (8%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+STG D +L GGI +TE++G G GKTQLC Q+ + +Q+ + G+ +YI
Sbjct: 99 ISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYID 158
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI--ENKVGMIV 156
TE+ F R+ Q+ + L + + IF Y D + L Q+ I ++ V +++
Sbjct: 159 TENTFRPERIMQIAKARGLDPDQALNNIFYARAYSS-DHQMILVDQAKSIIRQHNVALLI 217
Query: 157 IDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS--------A 207
+DS+ FR+ + + +R + L L+ + + V+ TNQV +
Sbjct: 218 VDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNP 277
Query: 208 MTHSDKNIPALGLTY 222
+ + NI A G TY
Sbjct: 278 LRPAGGNILAHGATY 292
>sp|Q67EU8|R51A1_MAIZE DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2
Length = 340
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 6/177 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I V+TGS + D IL+GGI G ITE+ G GKTQLC C++ Q+ G LY
Sbjct: 101 IQVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTPCVTCQLPLDQGGGEGKALY 160
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKR-TLESQSGFIENKVGMI 155
I E F RL Q+ + L + + Y R LE+ S IE + ++
Sbjct: 161 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALM 220
Query: 156 VIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHS 211
V+DS ++R ++ + R M L +L+ + + V+ TNQV + + S
Sbjct: 221 VVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFGVAVVITNQVVAQVDGS 277
>sp|C6A0N1|RADB_THESM DNA repair and recombination protein RadB OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=radB PE=3 SV=1
Length = 228
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
+++TGS+ D++L GGI G +T++ G GKT L +Q+ L V YI TE
Sbjct: 1 MLTTGSKNLDALLGGGIDKGILTQVYGPFATGKTTLAMQIGL-----LNEGKVAYIDTEG 55
Query: 102 VFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIA 161
F RLA++ E + K I ++F + K+T+ + + K MIV+DSI
Sbjct: 56 GFSPERLAKMVESRGMDSNSTLQKFLIFEAFDFKEQKKTISNLKKIVNEKFSMIVVDSIT 115
Query: 162 GIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
+R E+K D+ L L+ K+ + VI TNQV
Sbjct: 116 NHYR---VEEKKSSMTTDLGKQLQVLLWLARKYNLAVIVTNQV 155
>sp|O73948|RADA_METVO DNA repair and recombination protein RadA OS=Methanococcus voltae
GN=radA PE=1 SV=1
Length = 322
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ---------------- 86
+ST S + DS+L GG+ + +TE +G G GKTQ+ Q C++LQ
Sbjct: 80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 139
Query: 87 VSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQS 145
V+QP +YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 140 VAQPK--AVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIE 196
Query: 146 GFIE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTN 202
I+ N + ++VIDS+ FRN Y K +R + L++L+ VV+ TN
Sbjct: 197 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256
Query: 203 QVTS 206
QV++
Sbjct: 257 QVSA 260
>sp|A4WN87|RADA_PYRAR DNA repair and recombination protein RadA OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3
SV=1
Length = 333
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+STG D +L GGI +TE+ G G GKTQLC Q+ + +Q+ + G+ +YI
Sbjct: 102 ISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYID 161
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMIVI 157
TE+ F R+ Q+ L + + IF Y +E + ++ V +IV+
Sbjct: 162 TENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVV 221
Query: 158 DSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS--------AM 208
DS+ FR+ + + +R + L L+ + + V+ TNQV + +
Sbjct: 222 DSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPL 281
Query: 209 THSDKNIPALGLTY 222
+ NI A G TY
Sbjct: 282 RPAGGNILAHGATY 295
>sp|Q8ZYR9|RADA_PYRAE DNA repair and recombination protein RadA OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=radA PE=3 SV=1
Length = 333
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 16/195 (8%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+STG D +L GGI +TE+ G G GKTQLC Q+ + +Q+ + G+ +YI
Sbjct: 102 ISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYID 161
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI--ENKVGMIV 156
TE+ F R+ Q+ + L + IF Y D + L Q+ I ++ V ++V
Sbjct: 162 TENTFRPERIMQIAKARGLDSDQALHNIFYARAYSS-DHQMILVEQAKSIIKQHNVALLV 220
Query: 157 IDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS--------A 207
+DS+ FR+ + + +R + L L+ + + V+ TNQV +
Sbjct: 221 VDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNP 280
Query: 208 MTHSDKNIPALGLTY 222
+ + NI A G TY
Sbjct: 281 LRPAGGNILAHGATY 295
>sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51
PE=1 SV=1
Length = 342
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I +++GS + D +L+GGI G ITEL G GKTQLC +C++ Q+ G +Y
Sbjct: 103 IQITSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMY 162
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKR-TLESQSGFIENKVGMI 155
I E F RL Q+ + L + + Y R LE+ S IE + ++
Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALL 222
Query: 156 VIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHS 211
++DS ++R ++ + R + L +L+ + + V+ TNQV + + S
Sbjct: 223 IVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGS 279
>sp|Q55075|RADA_SULSO DNA repair and recombination protein RadA OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=radA PE=1 SV=2
Length = 324
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A +V K +++ +I STGS+ D +L GGI +TE G G GKT
Sbjct: 64 EARDALDIRFKTALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF--- 127
QLC Q+ +++Q+ P KG L YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 128 ---ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDL 183
H +D + L S+ I+ +IV+DS+ FR Y + R +
Sbjct: 181 AINTDHQIAIVDDLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 184 AHYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + I VI TNQV + M + D + G T
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|C3N7M8|RADA_SULIY DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=radA PE=3 SV=1
Length = 324
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A +V K +++ +I STGS+ D +L GGI +TE G G GKT
Sbjct: 64 EARDALDIRFKTALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF--- 127
QLC Q+ +++Q+ P KG L YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 128 ---ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDL 183
H +D + L S+ I+ +IV+DS+ FR Y + R +
Sbjct: 181 AINTDHQIAIVDDLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 184 AHYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + I VI TNQV + M + D + G T
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|C3NFU5|RADA_SULIN DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=radA PE=3 SV=1
Length = 324
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A +V K +++ +I STGS+ D +L GGI +TE G G GKT
Sbjct: 64 EARDALDIRFKTALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF--- 127
QLC Q+ +++Q+ P KG L YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 128 ---ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDL 183
H +D + L S+ I+ +IV+DS+ FR Y + R +
Sbjct: 181 AINTDHQIAIVDDLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 184 AHYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + I VI TNQV + M + D + G T
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|C3MY77|RADA_SULIM DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=radA PE=3 SV=1
Length = 324
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A +V K +++ +I STGS+ D +L GGI +TE G G GKT
Sbjct: 64 EARDALDIRFKTALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF--- 127
QLC Q+ +++Q+ P KG L YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 128 ---ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDL 183
H +D + L S+ I+ +IV+DS+ FR Y + R +
Sbjct: 181 AINTDHQIAIVDDLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 184 AHYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + I VI TNQV + M + D + G T
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|C3MRI1|RADA_SULIL DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=radA PE=3 SV=1
Length = 324
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A +V K +++ +I STGS+ D +L GGI +TE G G GKT
Sbjct: 64 EARDALDIRFKTALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF--- 127
QLC Q+ +++Q+ P KG L YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 128 ---ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDL 183
H +D + L S+ I+ +IV+DS+ FR Y + R +
Sbjct: 181 AINTDHQIAIVDDLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 184 AHYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + I VI TNQV + M + D + G T
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|C4KIT6|RADA_SULIK DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=radA PE=3 SV=1
Length = 324
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A +V K +++ +I STGS+ D +L GGI +TE G G GKT
Sbjct: 64 EARDALDIRFKTALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF--- 127
QLC Q+ +++Q+ P KG L YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 128 ---ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDL 183
H +D + L S+ I+ +IV+DS+ FR Y + R +
Sbjct: 181 AINTDHQIAIVDDLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 184 AHYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + I VI TNQV + M + D + G T
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|C3MZK6|RADA_SULIA DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.27) GN=radA PE=3 SV=1
Length = 324
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A +V K +++ +I STGS+ D +L GGI +TE G G GKT
Sbjct: 64 EARDALDIRFKTALEVKKERMNVKKI--STGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGVL-----YICTESVFPTARLAQLCELSPLAKPKCSDKIF--- 127
QLC Q+ +++Q+ P KG L YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180
Query: 128 ---ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDL 183
H +D + L S+ I+ +IV+DS+ FR Y + R +
Sbjct: 181 AINTDHQIAIVDDLQELVSKDPSIK----LIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 184 AHYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + I VI TNQV + M + D + G T
Sbjct: 237 LHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|O42634|DMC1_SCHPO Meiotic recombination protein dmc1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dmc1 PE=1 SV=2
Length = 332
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 25/219 (11%)
Query: 7 MLKL-GFQEWEVNKVKDLKKK-------KAFQVGKNPIDMTEIVVSTGSEKFDSILKGGI 58
+LK+ GF E +V+K+K+ K A ++ +N + I STGSE + IL GGI
Sbjct: 53 LLKIKGFSEAKVDKLKEAASKMCPANFSTAMEISQNRKKVWSI--STGSEALNGILGGGI 110
Query: 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYICTESVFPTARLAQLCEL 114
+ ITE+ G CGKTQ+ +C++ Q+ + G V +I TE F R+ + E
Sbjct: 111 QSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAER 170
Query: 115 SPLAKPKCSDKIFITHCY------EFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY 168
+ + + I ++ Y E+I T+ ++ G + ++++DSI +FR Y
Sbjct: 171 FGVDADQAMENIIVSRAYNSEQQMEYITKLGTIFAEDG----QYRLLIVDSIMALFRVDY 226
Query: 169 A-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+ + +R + + L+ +S + + V TNQV +
Sbjct: 227 SGRGELSERQQKLNIMLARLNHISEEFNVAVFVTNQVQA 265
>sp|Q8R2J9|RA51C_CRIGR DNA repair protein RAD51 homolog 3 OS=Cricetulus griseus GN=RAD51C
PE=2 SV=1
Length = 366
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV---- 94
T+ + T D+IL GGI TE+ G G GKTQLC+Q+ + +Q+ + GV
Sbjct: 87 TQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEA 146
Query: 95 LYICTESVFPTAR---LAQLC------------------ELSPLAKPKCSDKIFITHCYE 133
++I TE F R LA C L I+ C++
Sbjct: 147 VFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTLENILSHIYYFRCHD 206
Query: 134 FIDLKRTLESQSGFIEN--KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191
+ +L + F+ N KV +++ID IA FR+ D R + LA + L+
Sbjct: 207 YTELLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDL--DDLSLRTRLLNGLAQQMISLA 264
Query: 192 IKHRIVVICTNQVTSAMTHSDKN----IPALGLTYERAHDMRDLAHY 234
HR+ VI TNQ+T+ + DKN +PALG ++ A +R + H+
Sbjct: 265 NNHRLAVILTNQMTTKI---DKNQALLVPALGESWGHAATIRLIFHW 308
>sp|A3MXX9|RADA_PYRCJ DNA repair and recombination protein RadA OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1
Length = 332
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYIC 98
+STG D +L GGI +TE+ G G GKTQLC Q+ + +Q+ + G+ +YI
Sbjct: 101 ISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAIYID 160
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL--ESQSGFIENKVGMIV 156
TE+ F R+ Q+ + L + + IF Y D + L +++S ++ V ++V
Sbjct: 161 TENTFRPERIMQIAKARGLDPDQALNNIFYARAYS-ADHQMVLVEQAKSLIRQHNVALLV 219
Query: 157 IDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS--------A 207
+DS+ FR + + +R + L L+ + + V+ TNQV +
Sbjct: 220 VDSVIAHFRAEFPGRENLAERQQKLNKHIADLLRLADAYDVAVVVTNQVMAQPDVFFGNP 279
Query: 208 MTHSDKNIPALGLTY 222
+ + NI A G TY
Sbjct: 280 LRPAGGNILAHGATY 294
>sp|A4FWV5|RADA_METM5 DNA repair and recombination protein RadA OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=radA PE=3
SV=1
Length = 322
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 19/182 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ------------- 89
+STGS++ D++L GG+ + +TE +G G GKTQ+ Q C++LQ+++
Sbjct: 80 LSTGSKELDTVLAGGLESQSVTEFAGMYGSGKTQIMHQTCVNLQMAEKIFADLEGVVEEE 139
Query: 90 -PHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQSGF 147
+ +YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 140 MENPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIEDL 198
Query: 148 IE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
I+ N + +++IDS+ FRN + K +R + L++L+ + +V+ TNQV
Sbjct: 199 IKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLYNCIVLVTNQV 258
Query: 205 TS 206
+
Sbjct: 259 AA 260
>sp|Q4JAT5|RADA_SULAC DNA repair and recombination protein RadA OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=radA PE=3 SV=1
Length = 321
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 17/202 (8%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E + D++ K A +V K ++ +I +TGS+ D +L GGI +TE G G GKT
Sbjct: 61 EAREALDIRFKTALEVKKERMNTKKI--TTGSQALDGLLGGGIETRTMTEFFGEFGSGKT 118
Query: 76 QLCLQMCLSLQVSQPHKGV----LYICTESVFPTARLAQLCELSPLAKPKCSDKIFI--- 128
QLC Q+ +S+Q+ Q G+ +YI TE F R+ + + + L + I+
Sbjct: 119 QLCHQISISVQLPQEKGGLNGKAVYIDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMRA 178
Query: 129 ---THCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLA 184
H +D + L ++ I+ +I++DSI FR Y + R +
Sbjct: 179 INSDHQMAIVDDLQELITKDPAIK----LIIVDSITSHFRAEYPGRENLAVRQQKLNKHL 234
Query: 185 HYLHELSIKHRIVVICTNQVTS 206
H L L+ + I VI TNQV +
Sbjct: 235 HQLVRLAEMYDIAVIITNQVMA 256
>sp|P0CW59|RADA_METMP DNA repair and recombination protein RadA OS=Methanococcus
maripaludis (strain S2 / LL) GN=radA PE=3 SV=1
Length = 322
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP------------ 90
+STGS + D++L GGI + +TE +G G GKTQ+ Q C++LQ+ +
Sbjct: 80 LSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQIREKIFADLEGVVEEE 139
Query: 91 --HKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQSGF 147
+YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 140 LEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIEDL 198
Query: 148 IE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
I+ N + +++IDS+ FRN + K +R + L++L+ + +V+ TNQV
Sbjct: 199 IKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLYNCIVLVTNQV 258
Query: 205 TS 206
+
Sbjct: 259 AA 260
>sp|A6VGG2|RADA_METM7 DNA repair and recombination protein RadA OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=radA PE=3
SV=1
Length = 322
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS-------------- 88
+STGS++ D++L GG+ + +TE +G G GKTQ+ Q C++LQ++
Sbjct: 80 LSTGSKELDTVLAGGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEEE 139
Query: 89 QPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQSGF 147
H +YI TE F R+ Q+ E + D F+ Y D++ E
Sbjct: 140 LEHPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYN-SDMQMLFAEKIEDL 198
Query: 148 IE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
I+ N + +++IDS+ FRN + K +R + L++L+ + +V+ TNQV
Sbjct: 199 IKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLYNCIVLVTNQV 258
Query: 205 TS 206
+
Sbjct: 259 AA 260
>sp|Q9XED7|R51A2_MAIZE DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1
Length = 340
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I ++TGS + D IL GGI G ITE+ G GKTQLC +C++ Q+ G LY
Sbjct: 101 IQLTTGSRELDQILDGGIETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALY 160
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKR-TLESQSGFIENKVGMI 155
I E F R+ Q+ + L + + Y R LE+ S +E + ++
Sbjct: 161 IDAEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALM 220
Query: 156 VIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
V+DS ++R ++ + R + L +L+ + + V+ TNQV +
Sbjct: 221 VVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVA 272
>sp|P25453|DMC1_YEAST Meiotic recombination protein DMC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DMC1 PE=1 SV=1
Length = 334
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 11 GFQEWEVNKVKDLKKKKAFQVGKNP----IDMTEIV--VSTGSEKFDSILKGGIHAGGIT 64
G E +V K+K+ K QVG P +D+ + V +STGS++ DSIL GGI IT
Sbjct: 59 GLSEVKVEKIKE-AAGKIIQVGFIPATVQLDIRQRVYSLSTGSKQLDSILGGGIMTMSIT 117
Query: 65 ELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYICTESVFPTARLAQLC---ELSP- 116
E+ G CGKTQ+ +C++ Q+ + G V YI TE F R+ Q+ EL P
Sbjct: 118 EVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYELDPE 177
Query: 117 --LAKPKCSDKIFITHCYEFID-LKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDK 172
LA + + H E ++ L L S +IV+DSI FR Y +
Sbjct: 178 SCLANVSYARALNSEHQMELVEQLGEELSS------GDYRLIVVDSIMANFRVDYCGRGE 231
Query: 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+R + L+ L+ + + V TNQV S
Sbjct: 232 LSERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQS 265
>sp|Q49593|RADA_METJA DNA repair and recombination protein RadA OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=radA PE=3 SV=1
Length = 352
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ---------------V 87
+STGS+ D IL GG+ + +TE +G G GKTQ+ Q C++LQ +
Sbjct: 111 LSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEIL 170
Query: 88 SQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGF 147
++P +YI TE F R+ Q+ E L + + IF+ Y E+
Sbjct: 171 NEPK--AVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAENVENL 228
Query: 148 IEN--KVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
I + ++++DS+ FR Y K +R + L++L+ + VVI TNQV
Sbjct: 229 IREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNKLADIYNCVVIVTNQV 288
Query: 205 TS 206
+
Sbjct: 289 AA 290
>sp|Q924H5|RA51C_MOUSE DNA repair protein RAD51 homolog 3 OS=Mus musculus GN=Rad51c PE=2
SV=1
Length = 366
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 36/227 (15%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV---- 94
T+ + T D+IL GGI TE+ G G GKTQLC+Q+ + +Q+ + GV
Sbjct: 87 TQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEA 146
Query: 95 LYICTESVFPTARLAQLC---------------------ELSPLAKPKCSDKIFITHCYE 133
++I TE F R+ L L I+ C++
Sbjct: 147 VFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENILSHIYYFRCHD 206
Query: 134 FIDLKRTLESQSGFIEN--KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191
+ +L + F+ + KV +++ID IA FR+ ED + R + LA + L+
Sbjct: 207 YTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDL-EDLSL-RTRLLNGLAQQMISLA 264
Query: 192 IKHRIVVICTNQVTSAMTHSDKN----IPALGLTYERAHDMRDLAHY 234
HR+ VI TNQ+T+ + DKN +PALG ++ A +R + H+
Sbjct: 265 NNHRLAVILTNQMTTKI---DKNQALLVPALGESWGHAATIRLIFHW 308
>sp|A9AA90|RADA_METM6 DNA repair and recombination protein RadA OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=radA PE=3
SV=1
Length = 322
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS-------------- 88
+STGS++ D++L GG+ + +TE +G G GKTQ+ Q C++LQ++
Sbjct: 80 LSTGSKELDTVLAGGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEEE 139
Query: 89 QPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQSGF 147
+ +YI TE F R+ Q+ E + D F+ Y D++ E
Sbjct: 140 LENPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYN-SDMQMLFAEKIEDL 198
Query: 148 IE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
I+ N + +++IDS+ FRN + K +R + L++L+ + +V+ TNQV
Sbjct: 199 IKSGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLYNCIVLVTNQV 258
Query: 205 TS 206
+
Sbjct: 259 AA 260
>sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1
SV=1
Length = 376
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 36/227 (15%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV---- 94
T+ + T D IL GG+ TE+ GA G GKTQLC+Q+ + +Q+ + GV
Sbjct: 96 TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEA 155
Query: 95 LYICTESVFPTARLAQLCE-----LSPLAKPKCSDK----------------IFITHCYE 133
++I TE F R+ L L +A+ ++ I+ C +
Sbjct: 156 VFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRD 215
Query: 134 FIDLKRTLESQSGFIE--NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191
+ +L + F+ +KV ++++D IA FR+ D R + LA + L+
Sbjct: 216 YTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDL--DDLSLRTRLLNGLAQQMISLA 273
Query: 192 IKHRIVVICTNQVTSAMTHSDKN----IPALGLTYERAHDMRDLAHY 234
HR+ VI TNQ+T+ + D+N +PALG ++ A +R + H+
Sbjct: 274 NNHRLAVILTNQMTTKI---DRNQALLVPALGESWGHAATIRLIFHW 317
>sp|A4YCN4|RADA_METS5 DNA repair and recombination protein RadA OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1
Length = 324
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 13/216 (6%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E D++ K A ++ + + +I +TGS+ D +L GGI +TEL G G GKT
Sbjct: 64 EARDALDIRFKTALEIEQERASVKKI--TTGSQALDGLLGGGIETRTMTELFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKG-----VLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITH 130
Q+C Q+ +++Q+ P +G LYI TE F T R+ + L + I
Sbjct: 122 QICHQVSVNVQLP-PERGGLSGKALYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIR 180
Query: 131 CYEFIDLKRTLESQSGFI--ENKVGMIVIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYL 187
+E I +N + ++V+DSI FR Y+ + R + H L
Sbjct: 181 AINTDHQIAIVEELQDIIAKDNSIKLVVVDSITSHFRAEYSGRENLAVRQQKLNRHLHQL 240
Query: 188 HELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
L+ + + VI TNQV + M + D + G T
Sbjct: 241 VRLAEIYDLAVIVTNQVMARPDMFYGDPTVAVGGHT 276
>sp|Q975Y1|RADA_SULTO DNA repair and recombination protein RadA OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=radA
PE=3 SV=1
Length = 324
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 16 EVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
E + D++ K A +V K I+ +I +TGS+ D +L GGI +TEL G G GKT
Sbjct: 64 EAREALDIRFKTALEVKKERINTKKI--TTGSQALDGLLGGGIETRTMTELFGEFGSGKT 121
Query: 76 QLCLQMCLSLQVSQPHKGV----LYICTESVFPTARLAQLCELSPLAKPKCSDKIFIT-- 129
QLC Q+ +++Q+ G+ +YI TE F R+ + + L + I+
Sbjct: 122 QLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRA 181
Query: 130 ----HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLA 184
H +D + L S+ I+ ++++DS+ FR + + R +
Sbjct: 182 INSDHQMAIVDDLQELISKDPAIK----LVIVDSVTSHFRAEFPGRENLAVRQQKLNKHL 237
Query: 185 HYLHELSIKHRIVVICTNQVTSA--MTHSDKNIPALGLT 221
H L L+ + + VI TNQV + M + D + G T
Sbjct: 238 HQLVRLAEMYDLAVIITNQVMARPDMFYGDPTVAVGGHT 276
>sp|P25301|RAD57_YEAST DNA repair protein RAD57 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD57 PE=1 SV=1
Length = 460
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 44 STGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGV----LYICT 99
+T D +L GGI GITE+ G S GK+QL +Q+ LS+Q+S+P G+ +YI T
Sbjct: 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITT 160
Query: 100 ESVFPTARLAQLCELSPLAKPK--CSDKIFITHCYEFIDLKRTLESQSGFI----ENKVG 153
E PT RL + P + IF C + I+ + + Q + + +
Sbjct: 161 EGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIK 220
Query: 154 MIVIDSIA---------GIFRNTYAEDKYVQR-AHDMRDLAHYLHELSIKHRIVVICTNQ 203
+++IDSI+ FR + Y+ R A ++ LAH + + V+ NQ
Sbjct: 221 LVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAH-------DYSLSVVVANQ 273
Query: 204 V 204
V
Sbjct: 274 V 274
>sp|P0CW58|RADA_METMI DNA repair and recombination protein RadA OS=Methanococcus
maripaludis GN=radA PE=1 SV=1
Length = 322
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP------------ 90
+STGS + ++L GGI + +TE +G G GKTQ+ Q C++LQ+ +
Sbjct: 80 LSTGSTELGTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFADLEGVVEEE 139
Query: 91 --HKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL-ESQSGF 147
+YI TE F R+ Q+ E + + D F+ Y D++ E
Sbjct: 140 LEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYN-SDMQMLFAEKIEDL 198
Query: 148 IE--NKVGMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204
I+ N + +++IDS+ FRN + K +R + L++L+ + +V+ TNQV
Sbjct: 199 IKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLADLYNCIVLVTNQV 258
Query: 205 TS 206
+
Sbjct: 259 AA 260
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-a
PE=2 SV=1
Length = 336
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I +STGS++ D +L+GG+ G ITE+ G GKTQLC + ++ Q+ G +Y
Sbjct: 97 IQISTGSKELDKLLQGGVETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMY 156
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMI 155
I TE F RL + E L+ D + + + L S + E++ ++
Sbjct: 157 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALL 216
Query: 156 VIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT-----SAMT 209
++DS ++R Y+ + R + L L+ + + V+ TNQV +AM
Sbjct: 217 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMF 276
Query: 210 HSDKNIPALG 219
+D P G
Sbjct: 277 AADPKKPIGG 286
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYIC 98
++TGS+ D +L GG+ ITE G G GKTQ+C Q+ +++Q+ + G V+ I
Sbjct: 90 ITTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIID 149
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYE------FIDLKRTLESQSGFIENKV 152
TE+ F R+ Q+ E L + I++ Y +D + L + V
Sbjct: 150 TENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPV 209
Query: 153 GMIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+I++DS+ FR Y R + H L + + ++ TNQV +
Sbjct: 210 RLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTNQVMA 264
>sp|O15315|RA51B_HUMAN DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1
SV=2
Length = 384
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 17 VNKVKDLKKKKAFQV-GKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKT 75
V++ K + A+ + + D + +ST D L GG+ G +TE++G GCGKT
Sbjct: 56 VSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKT 115
Query: 76 QLCLQMCLSLQVSQPHKG----VLYICTESVFPTARLAQLCELSPLAKPKCSDKIFIT-- 129
Q C+ M + + G V+YI TES F RL ++ E +K+ +T
Sbjct: 116 QFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSS 175
Query: 130 --HCYEFID----LKRTLESQSGFIENKVGMIVIDSIAGIFRNTY---AEDKYVQRAHDM 180
H Y + L+R + I + ++++DS+A + R + + +R +
Sbjct: 176 KVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFL 235
Query: 181 RDLAHYLHELSIKHRIVVICTNQVTSAMT 209
A L L+ + I VI TNQ+T+ ++
Sbjct: 236 AREASSLKYLAEEFSIPVILTNQITTHLS 264
>sp|Q74MX9|RADA_NANEQ DNA repair and recombination protein RadA OS=Nanoarchaeum equitans
(strain Kin4-M) GN=radA PE=3 SV=1
Length = 325
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVL-----YI 97
++T S+ DS+L GGI +TE G G GKTQ+ Q+ + +Q+ P +G L YI
Sbjct: 89 ITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLP-PEQGGLEGKAVYI 147
Query: 98 CTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSG--FIE--NKVG 153
TE F R+ Q+ E L K ++ H F + L ++ I +
Sbjct: 148 DTEGTFRPERIKQMAEALDLDPKKALKNVY--HMKVFNTDHQMLAARKAEELIRKGEPIK 205
Query: 154 MIVIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSD 212
+IV+DS+ +FR Y + +R H + H L ++ + + + TNQV M D
Sbjct: 206 LIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLRIAELYNVAIYVTNQV---MAKPD 262
Query: 213 KNIPAL 218
IP L
Sbjct: 263 SFIPGL 268
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2
SV=1
Length = 339
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I ++TGS++ D +L+GGI G ITEL G GKTQLC + ++ Q+ G +Y
Sbjct: 100 IQITTGSKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMY 159
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMI 155
I TE F RL + E L+ D + + + L S + E++ ++
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAESRYALL 219
Query: 156 VIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT-----SAMT 209
++DS ++R Y+ + R + L L+ + + V+ TNQV +AM
Sbjct: 220 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMF 279
Query: 210 HSDKNIPALG 219
+D P G
Sbjct: 280 AADPKKPIGG 289
>sp|Q14565|DMC1_HUMAN Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens
GN=DMC1 PE=1 SV=2
Length = 340
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 21/213 (9%)
Query: 11 GFQEWEVNKVKDLKKK---KAFQVGKNPIDMTEIV--VSTGSEKFDSILKGGIHAGGITE 65
G E +V+K+K+ K F + ++V ++TGS++FD +L GGI + ITE
Sbjct: 64 GLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITE 123
Query: 66 LSGASGCGKTQLCLQMCLSLQV----SQPHKGVLYICTESVFPTARLAQLCELSPLAKPK 121
G GKTQL +C++ Q+ P +++I TE+ F RL + + +
Sbjct: 124 AFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDA 183
Query: 122 CSDKIFITHCY------EFID-LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYA-EDKY 173
D + Y E +D + ++G + +++IDSI +FR ++ +
Sbjct: 184 VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK----LLIIDSIMALFRVDFSGRGEL 239
Query: 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206
+R + + L ++S ++ + V TNQ+T+
Sbjct: 240 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 272
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1
SV=1
Length = 339
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I ++TGS++ D +L+GGI G ITE+ G GKTQ+C + ++ Q+ G +Y
Sbjct: 100 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMY 159
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSG-FIENKVGMI 155
I TE F RL + E L+ D + + + L S +E++ ++
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALL 219
Query: 156 VIDSIAGIFRNTYA-EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT-----SAMT 209
++DS ++R Y+ + R + L L+ + + V+ TNQV +AM
Sbjct: 220 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMF 279
Query: 210 HSDKNIPALG 219
+D P G
Sbjct: 280 AADPKKPIGG 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,217,385
Number of Sequences: 539616
Number of extensions: 3882376
Number of successful extensions: 13930
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 316
Number of HSP's that attempted gapping in prelim test: 13665
Number of HSP's gapped (non-prelim): 497
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)