Query psy2198
Match_columns 279
No_of_seqs 172 out of 2674
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 18:43:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02238 recomb_DMC1 meiotic 100.0 4.4E-36 9.4E-41 260.4 21.9 233 4-237 34-283 (313)
2 PLN03187 meiotic recombination 100.0 1.2E-35 2.7E-40 259.2 22.3 233 4-237 64-312 (344)
3 PTZ00035 Rad51 protein; Provis 100.0 1.3E-34 2.8E-39 253.9 21.4 234 4-238 56-306 (337)
4 PF08423 Rad51: Rad51; InterP 100.0 8.7E-35 1.9E-39 246.4 15.6 198 39-237 16-225 (256)
5 PLN03186 DNA repair protein RA 100.0 5.7E-34 1.2E-38 249.1 20.6 233 4-237 61-310 (342)
6 KOG1434|consensus 100.0 1.9E-35 4E-40 239.4 7.6 232 6-238 55-304 (335)
7 TIGR02239 recomb_RAD51 DNA rep 100.0 4.7E-33 1E-37 242.2 22.5 233 4-237 34-284 (316)
8 PRK04301 radA DNA repair and r 100.0 1.8E-30 3.9E-35 227.6 21.3 234 3-237 38-287 (317)
9 cd01393 recA_like RecA is a b 100.0 6E-30 1.3E-34 214.3 20.7 196 43-238 1-204 (226)
10 cd01123 Rad51_DMC1_radA Rad51_ 100.0 6E-30 1.3E-34 215.5 20.1 195 43-237 1-207 (235)
11 TIGR02236 recomb_radA DNA repa 100.0 2.7E-29 5.8E-34 219.8 23.5 232 5-237 33-281 (310)
12 COG0468 RecA RecA/RadA recombi 100.0 2.8E-28 6.1E-33 206.2 20.7 219 10-237 3-230 (279)
13 PRK09361 radB DNA repair and r 100.0 3.7E-27 8E-32 197.3 19.6 187 41-234 3-190 (225)
14 KOG1564|consensus 100.0 5.5E-27 1.2E-31 192.9 17.5 197 40-236 81-311 (351)
15 cd01394 radB RadB. The archaea 100.0 5.4E-27 1.2E-31 195.4 17.5 187 43-236 1-188 (218)
16 cd00983 recA RecA is a bacter 99.9 2.2E-26 4.8E-31 199.0 19.9 217 29-257 22-252 (325)
17 PRK09354 recA recombinase A; P 99.9 8.2E-26 1.8E-30 196.7 21.5 210 36-257 34-257 (349)
18 COG1066 Sms Predicted ATP-depe 99.9 2.4E-26 5.1E-31 199.1 14.7 184 37-243 69-252 (456)
19 TIGR02012 tigrfam_recA protein 99.9 2.9E-25 6.3E-30 192.0 20.4 212 35-258 28-253 (321)
20 TIGR02237 recomb_radB DNA repa 99.9 4.1E-25 8.8E-30 182.9 17.4 179 50-236 1-180 (209)
21 PRK09519 recA DNA recombinatio 99.9 4.3E-24 9.3E-29 201.9 19.6 195 29-235 27-229 (790)
22 PF00154 RecA: recA bacterial 99.9 7.8E-24 1.7E-28 182.5 17.9 194 32-237 23-224 (322)
23 cd01121 Sms Sms (bacterial rad 99.9 9.5E-24 2.1E-28 187.2 17.8 180 37-238 58-237 (372)
24 TIGR00416 sms DNA repair prote 99.9 1.7E-23 3.8E-28 190.4 16.5 178 38-237 71-248 (454)
25 PRK11823 DNA repair protein Ra 99.9 5.7E-23 1.2E-27 187.0 18.3 177 37-235 56-232 (446)
26 TIGR03878 thermo_KaiC_2 KaiC d 99.9 9.3E-22 2E-26 167.5 18.2 179 41-234 2-204 (259)
27 TIGR03877 thermo_KaiC_1 KaiC d 99.9 4.2E-21 9.1E-26 161.7 17.6 176 42-239 2-199 (237)
28 cd01122 GP4d_helicase GP4d_hel 99.9 1E-20 2.3E-25 162.6 17.8 190 39-237 9-231 (271)
29 PRK04328 hypothetical protein; 99.9 2E-20 4.3E-25 158.5 18.4 174 41-236 3-198 (249)
30 PF06745 KaiC: KaiC; InterPro 99.8 1.6E-20 3.6E-25 157.2 14.1 174 43-239 1-190 (226)
31 PHA02542 41 41 helicase; Provi 99.8 6.2E-20 1.3E-24 167.5 18.6 211 39-253 168-406 (473)
32 PF03796 DnaB_C: DnaB-like hel 99.8 2.1E-20 4.6E-25 159.6 14.2 190 42-239 1-219 (259)
33 TIGR03600 phage_DnaB phage rep 99.8 6.9E-20 1.5E-24 166.8 17.3 189 40-237 174-391 (421)
34 PRK09165 replicative DNA helic 99.8 7.1E-20 1.5E-24 168.9 17.4 191 39-235 196-428 (497)
35 TIGR00665 DnaB replicative DNA 99.8 1.1E-19 2.4E-24 166.2 17.1 189 39-236 174-391 (434)
36 PRK06321 replicative DNA helic 99.8 2.6E-19 5.7E-24 163.6 18.3 191 39-235 205-424 (472)
37 PRK08506 replicative DNA helic 99.8 1.9E-19 4.2E-24 165.2 17.4 189 39-236 171-388 (472)
38 TIGR03881 KaiC_arch_4 KaiC dom 99.8 3.9E-19 8.5E-24 149.1 17.6 178 42-239 1-194 (229)
39 PRK08760 replicative DNA helic 99.8 1.7E-19 3.7E-24 165.4 16.5 189 39-236 208-425 (476)
40 PRK07004 replicative DNA helic 99.8 2.7E-19 5.8E-24 163.6 16.8 190 39-236 192-410 (460)
41 PRK08006 replicative DNA helic 99.8 2.9E-19 6.2E-24 163.4 17.0 190 39-236 203-422 (471)
42 PRK05748 replicative DNA helic 99.8 2.9E-19 6.3E-24 163.8 17.0 191 39-236 182-401 (448)
43 PRK06904 replicative DNA helic 99.8 3E-19 6.4E-24 163.5 16.6 190 39-236 200-420 (472)
44 PRK05595 replicative DNA helic 99.8 3.3E-19 7.3E-24 163.0 16.8 188 40-236 181-397 (444)
45 PRK08840 replicative DNA helic 99.8 7.1E-19 1.5E-23 160.6 17.2 190 39-236 196-415 (464)
46 cd00984 DnaB_C DnaB helicase C 99.8 6.1E-19 1.3E-23 149.1 15.6 180 49-237 2-210 (242)
47 PRK05636 replicative DNA helic 99.8 6E-19 1.3E-23 162.3 16.6 189 39-236 244-461 (505)
48 KOG1433|consensus 99.8 2.3E-19 5E-24 154.4 10.6 226 8-238 61-293 (326)
49 PRK06067 flagellar accessory p 99.8 2.5E-18 5.4E-23 144.7 16.5 152 39-206 3-166 (234)
50 TIGR02655 circ_KaiC circadian 99.8 1.6E-18 3.4E-23 160.1 16.4 179 39-239 241-429 (484)
51 PRK06749 replicative DNA helic 99.8 2.3E-18 5.1E-23 156.0 16.5 191 39-236 165-386 (428)
52 PRK05973 replicative DNA helic 99.8 1.8E-18 3.9E-23 143.9 12.2 163 50-231 54-220 (237)
53 PRK09302 circadian clock prote 99.8 7.8E-18 1.7E-22 156.9 17.4 154 39-206 9-178 (509)
54 PRK09302 circadian clock prote 99.8 2.2E-17 4.7E-22 153.9 17.0 180 38-236 250-436 (509)
55 TIGR02655 circ_KaiC circadian 99.8 3E-17 6.5E-22 151.6 17.6 151 42-208 2-170 (484)
56 PRK07773 replicative DNA helic 99.8 1.6E-17 3.4E-22 163.2 16.2 177 39-224 196-396 (886)
57 TIGR03880 KaiC_arch_3 KaiC dom 99.7 7.1E-17 1.5E-21 135.0 14.1 169 46-235 1-179 (224)
58 PF13481 AAA_25: AAA domain; P 99.7 4.4E-17 9.6E-22 133.0 11.7 160 39-208 10-192 (193)
59 COG0305 DnaB Replicative DNA h 99.7 5E-16 1.1E-20 138.5 15.3 189 40-237 176-393 (435)
60 COG0467 RAD55 RecA-superfamily 99.7 5E-16 1.1E-20 132.7 14.3 155 40-209 2-175 (260)
61 PRK08533 flagellar accessory p 99.7 3.4E-15 7.3E-20 125.0 15.3 179 40-238 3-189 (230)
62 COG2874 FlaH Predicted ATPases 99.7 3.4E-15 7.4E-20 119.5 14.2 152 42-210 9-173 (235)
63 KOG2859|consensus 99.6 4.7E-14 1E-18 112.8 12.5 182 58-239 35-261 (293)
64 cd01125 repA Hexameric Replica 99.6 1.3E-13 2.9E-18 116.3 15.4 167 61-238 1-194 (239)
65 KOG2373|consensus 99.5 3.2E-14 6.8E-19 121.2 6.7 184 46-241 259-463 (514)
66 cd01120 RecA-like_NTPases RecA 99.5 7E-13 1.5E-17 104.6 12.1 161 63-234 1-165 (165)
67 cd01124 KaiC KaiC is a circadi 99.4 5.3E-12 1.1E-16 102.3 14.8 154 63-237 1-167 (187)
68 COG3598 RepA RecA-family ATPas 99.4 3.2E-12 6.9E-17 108.2 10.5 173 55-238 83-274 (402)
69 COG1126 GlnQ ABC-type polar am 99.4 7.3E-13 1.6E-17 106.6 6.1 144 49-208 17-199 (240)
70 COG1136 SalX ABC-type antimicr 99.4 6.5E-12 1.4E-16 103.3 11.4 148 47-209 18-207 (226)
71 COG3842 PotA ABC-type spermidi 99.3 1.5E-12 3.2E-17 113.9 4.7 173 46-233 17-227 (352)
72 COG4608 AppF ABC-type oligopep 99.3 7.6E-12 1.7E-16 104.5 8.4 181 47-248 26-215 (268)
73 COG1120 FepC ABC-type cobalami 99.3 4.9E-12 1.1E-16 106.0 7.1 142 49-206 17-200 (258)
74 COG3839 MalK ABC-type sugar tr 99.3 1.4E-12 2.9E-17 113.5 2.5 140 55-208 23-197 (338)
75 COG1131 CcmA ABC-type multidru 99.3 2.3E-11 4.9E-16 105.5 9.7 149 46-210 17-202 (293)
76 COG0444 DppD ABC-type dipeptid 99.2 4.6E-12 1E-16 108.1 4.2 191 47-249 18-260 (316)
77 COG1124 DppF ABC-type dipeptid 99.2 1.9E-11 4E-16 100.3 7.5 162 48-227 21-226 (252)
78 COG4619 ABC-type uncharacteriz 99.2 1.4E-10 3.1E-15 89.8 11.8 149 44-207 13-196 (223)
79 COG1118 CysA ABC-type sulfate/ 99.2 1.1E-11 2.5E-16 104.6 6.1 148 46-209 14-202 (345)
80 COG4586 ABC-type uncharacteriz 99.2 2.8E-11 6.1E-16 100.6 7.8 142 55-210 44-222 (325)
81 COG3845 ABC-type uncharacteriz 99.2 4.6E-11 1E-15 106.7 8.3 155 39-210 10-205 (501)
82 COG1135 AbcC ABC-type metal io 99.2 3.1E-11 6.6E-16 102.2 6.4 177 46-237 18-236 (339)
83 cd03216 ABC_Carb_Monos_I This 99.2 3.6E-10 7.8E-15 89.7 11.3 125 55-208 20-145 (163)
84 COG1125 OpuBA ABC-type proline 99.2 4.1E-11 9E-16 98.7 5.4 170 46-230 13-223 (309)
85 COG4555 NatA ABC-type Na+ tran 99.2 2.3E-10 4.9E-15 91.3 9.3 151 44-210 12-198 (245)
86 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 4.5E-11 9.8E-16 99.8 5.5 146 48-209 18-203 (254)
87 COG3840 ThiQ ABC-type thiamine 99.1 1E-10 2.2E-15 91.8 6.7 137 56-209 20-194 (231)
88 COG1123 ATPase components of v 99.1 2.4E-11 5.3E-16 111.0 3.6 178 47-239 304-526 (539)
89 COG1127 Ttg2A ABC-type transpo 99.1 2.1E-10 4.6E-15 93.9 8.7 147 49-210 23-211 (263)
90 cd03229 ABC_Class3 This class 99.1 3.3E-10 7.2E-15 91.2 9.8 135 55-209 20-165 (178)
91 COG0411 LivG ABC-type branched 99.1 1.6E-11 3.5E-16 100.7 1.7 163 46-223 16-230 (250)
92 COG1117 PstB ABC-type phosphat 99.1 9.9E-11 2.2E-15 94.1 6.0 180 47-241 20-246 (253)
93 COG4604 CeuD ABC-type enteroch 99.1 6.9E-10 1.5E-14 88.3 9.9 139 55-207 21-198 (252)
94 COG3638 ABC-type phosphate/pho 99.1 7.7E-11 1.7E-15 96.2 4.5 67 41-111 11-79 (258)
95 cd03230 ABC_DR_subfamily_A Thi 99.1 3.7E-10 8.1E-15 90.5 8.3 130 55-208 20-158 (173)
96 cd03246 ABCC_Protease_Secretio 99.1 3.4E-10 7.5E-15 90.7 7.7 129 55-208 22-159 (173)
97 COG1116 TauB ABC-type nitrate/ 99.1 4.3E-11 9.3E-16 98.8 2.5 147 47-208 16-194 (248)
98 TIGR01184 ntrCD nitrate transp 99.1 2.1E-10 4.6E-15 96.2 6.4 137 57-208 7-178 (230)
99 COG2884 FtsE Predicted ATPase 99.1 3.6E-10 7.9E-15 89.3 7.2 153 40-209 8-201 (223)
100 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 1.7E-09 3.7E-14 89.9 11.5 49 49-101 19-67 (218)
101 cd03214 ABC_Iron-Siderophores_ 99.1 1.3E-09 2.8E-14 87.9 10.4 133 55-208 19-161 (180)
102 COG1122 CbiO ABC-type cobalt t 99.1 1.9E-10 4.1E-15 96.1 5.3 146 48-209 18-203 (235)
103 PRK11247 ssuB aliphatic sulfon 99.1 2.7E-10 5.9E-15 97.0 6.4 141 49-208 27-197 (257)
104 TIGR02211 LolD_lipo_ex lipopro 99.1 8.4E-10 1.8E-14 92.0 9.1 145 49-209 20-206 (221)
105 PRK09473 oppD oligopeptide tra 99.0 2.7E-10 5.9E-15 100.5 6.2 166 48-227 30-246 (330)
106 PRK13650 cbiO cobalt transport 99.0 6.4E-10 1.4E-14 96.0 8.3 145 49-208 22-204 (279)
107 PRK11629 lolD lipoprotein tran 99.0 7.8E-10 1.7E-14 93.0 8.6 49 49-101 24-72 (233)
108 PRK10584 putative ABC transpor 99.0 9.3E-10 2E-14 92.2 9.0 139 55-208 30-210 (228)
109 cd03222 ABC_RNaseL_inhibitor T 99.0 1.4E-09 3.1E-14 87.2 9.5 114 57-209 21-136 (177)
110 cd03293 ABC_NrtD_SsuB_transpor 99.0 1.7E-10 3.7E-15 96.1 4.3 48 49-100 19-66 (220)
111 cd03215 ABC_Carb_Monos_II This 99.0 6.2E-10 1.3E-14 90.0 7.4 140 49-208 15-167 (182)
112 PRK11248 tauB taurine transpor 99.0 2.9E-10 6.3E-15 96.9 5.7 47 50-100 17-63 (255)
113 PRK11650 ugpC glycerol-3-phosp 99.0 5.6E-11 1.2E-15 105.8 1.1 145 49-208 19-198 (356)
114 PRK11022 dppD dipeptide transp 99.0 3.4E-10 7.5E-15 99.7 6.1 167 48-227 21-238 (326)
115 COG0410 LivF ABC-type branched 99.0 9E-10 2E-14 89.8 7.9 149 56-221 24-215 (237)
116 TIGR01186 proV glycine betaine 99.0 1.5E-10 3.2E-15 103.0 3.7 145 49-208 8-193 (363)
117 COG2274 SunT ABC-type bacterio 99.0 6E-10 1.3E-14 106.6 7.8 160 55-230 493-694 (709)
118 PRK11144 modC molybdate transp 99.0 1.6E-10 3.5E-15 102.9 3.6 138 56-208 19-192 (352)
119 PRK13633 cobalt transporter AT 99.0 9.1E-10 2E-14 95.1 8.1 146 49-209 25-209 (280)
120 PRK10851 sulfate/thiosulfate t 99.0 9.7E-11 2.1E-15 104.1 2.1 145 49-208 17-200 (353)
121 cd03247 ABCC_cytochrome_bd The 99.0 1.9E-09 4E-14 86.9 9.4 134 49-208 17-160 (178)
122 PRK11432 fbpC ferric transport 99.0 7.4E-11 1.6E-15 104.8 1.2 145 49-208 21-200 (351)
123 TIGR02314 ABC_MetN D-methionin 99.0 1.7E-10 3.7E-15 102.0 3.5 145 48-208 19-204 (343)
124 TIGR01166 cbiO cobalt transpor 99.0 6.7E-10 1.4E-14 90.4 6.7 48 50-101 8-55 (190)
125 cd00267 ABC_ATPase ABC (ATP-bi 99.0 3.4E-09 7.5E-14 83.5 10.6 124 56-209 20-144 (157)
126 TIGR03265 PhnT2 putative 2-ami 99.0 9.6E-11 2.1E-15 104.2 1.8 145 49-208 19-198 (353)
127 COG1123 ATPase components of v 99.0 6.6E-10 1.4E-14 101.7 7.1 182 48-241 23-253 (539)
128 cd03298 ABC_ThiQ_thiamine_tran 99.0 8.1E-10 1.8E-14 91.4 7.1 140 55-209 18-193 (211)
129 COG1129 MglA ABC-type sugar tr 99.0 8.6E-10 1.9E-14 100.3 7.7 150 45-210 19-210 (500)
130 COG4559 ABC-type hemin transpo 99.0 8.1E-10 1.8E-14 88.9 6.6 52 45-100 12-63 (259)
131 cd03265 ABC_DrrA DrrA is the A 99.0 3.5E-09 7.6E-14 88.2 10.8 146 49-209 15-196 (220)
132 COG1134 TagH ABC-type polysacc 99.0 3.9E-10 8.5E-15 92.7 4.9 152 47-235 40-223 (249)
133 cd03228 ABCC_MRP_Like The MRP 99.0 2.3E-09 4.9E-14 85.8 9.2 133 50-209 18-159 (171)
134 PRK11308 dppF dipeptide transp 99.0 5.2E-10 1.1E-14 98.6 6.0 163 48-226 29-238 (327)
135 COG4172 ABC-type uncharacteriz 99.0 1.5E-09 3.3E-14 95.0 8.6 169 55-238 307-522 (534)
136 PRK13536 nodulation factor exp 99.0 2E-09 4.3E-14 95.3 9.6 146 49-210 56-237 (340)
137 cd03259 ABC_Carb_Solutes_like 99.0 1.6E-09 3.6E-14 89.7 8.5 48 50-101 16-63 (213)
138 PRK13635 cbiO cobalt transport 99.0 1.1E-09 2.5E-14 94.4 7.8 146 49-209 22-205 (279)
139 PRK10247 putative ABC transpor 99.0 1.4E-09 3E-14 91.0 7.9 145 49-208 22-201 (225)
140 TIGR02315 ABC_phnC phosphonate 99.0 1.3E-09 2.7E-14 92.2 7.7 49 49-101 17-65 (243)
141 TIGR03258 PhnT 2-aminoethylpho 99.0 1.2E-10 2.7E-15 103.7 1.6 145 49-208 20-202 (362)
142 PRK09452 potA putrescine/sperm 99.0 1.2E-10 2.7E-15 104.1 1.6 145 49-208 29-208 (375)
143 COG4181 Predicted ABC-type tra 99.0 4.4E-09 9.6E-14 81.9 9.8 136 57-209 32-211 (228)
144 PRK13651 cobalt transporter AT 99.0 3E-10 6.4E-15 99.2 3.8 49 48-100 21-69 (305)
145 TIGR00960 3a0501s02 Type II (G 99.0 2.7E-10 5.8E-15 94.6 3.3 49 49-101 18-66 (216)
146 TIGR01188 drrA daunorubicin re 99.0 3.7E-09 7.9E-14 92.4 10.5 145 49-209 8-188 (302)
147 PRK13537 nodulation ABC transp 99.0 3.2E-09 6.8E-14 92.8 10.1 147 48-210 21-203 (306)
148 cd03256 ABC_PhnC_transporter A 99.0 4.4E-09 9.6E-14 88.8 10.7 48 50-101 17-64 (241)
149 cd03268 ABC_BcrA_bacitracin_re 99.0 5.5E-09 1.2E-13 86.2 11.0 144 49-208 15-189 (208)
150 cd03258 ABC_MetN_methionine_tr 99.0 4.8E-09 1E-13 88.1 10.7 143 50-208 21-204 (233)
151 cd03294 ABC_Pro_Gly_Bertaine T 99.0 5.1E-09 1.1E-13 89.9 11.0 44 55-101 44-87 (269)
152 PRK13643 cbiO cobalt transport 99.0 3.7E-10 8.1E-15 97.9 3.9 49 49-101 21-69 (288)
153 PRK13637 cbiO cobalt transport 99.0 3.6E-10 7.8E-15 97.9 3.8 51 48-102 21-71 (287)
154 PRK11607 potG putrescine trans 99.0 2.3E-10 5E-15 102.5 2.6 145 49-208 34-213 (377)
155 cd03296 ABC_CysA_sulfate_impor 99.0 8.7E-10 1.9E-14 93.0 5.9 43 55-100 22-64 (239)
156 cd03301 ABC_MalK_N The N-termi 99.0 2.1E-09 4.5E-14 89.1 8.0 144 50-208 16-194 (213)
157 PRK13647 cbiO cobalt transport 99.0 4.1E-10 8.9E-15 97.0 3.9 144 49-208 20-201 (274)
158 TIGR03608 L_ocin_972_ABC putat 99.0 7.5E-09 1.6E-13 85.2 11.3 44 55-101 18-61 (206)
159 TIGR03864 PQQ_ABC_ATP ABC tran 99.0 8E-10 1.7E-14 93.1 5.5 140 55-209 21-197 (236)
160 PRK10070 glycine betaine trans 99.0 5.7E-09 1.2E-13 94.1 11.1 144 50-208 44-228 (400)
161 PRK13652 cbiO cobalt transport 99.0 2.2E-09 4.8E-14 92.6 8.2 146 49-209 19-202 (277)
162 cd03213 ABCG_EPDR ABCG transpo 99.0 8.5E-10 1.8E-14 90.1 5.2 138 49-206 24-172 (194)
163 PRK13636 cbiO cobalt transport 99.0 2.3E-09 5E-14 92.7 8.2 146 49-209 21-206 (283)
164 PRK09493 glnQ glutamine ABC tr 99.0 6.2E-10 1.3E-14 94.0 4.5 49 49-101 16-64 (240)
165 cd03219 ABC_Mj1267_LivG_branch 99.0 3.9E-10 8.5E-15 94.9 3.2 44 55-101 20-63 (236)
166 cd03261 ABC_Org_Solvent_Resist 98.9 6.7E-10 1.4E-14 93.5 4.5 49 49-101 15-63 (235)
167 PRK13648 cbiO cobalt transport 98.9 2.9E-09 6.2E-14 91.5 8.4 49 49-101 24-72 (269)
168 cd03231 ABC_CcmA_heme_exporter 98.9 2.8E-09 6.2E-14 87.5 8.0 48 50-101 16-63 (201)
169 PRK10771 thiQ thiamine transpo 98.9 1.9E-09 4.1E-14 90.6 7.0 140 55-209 19-194 (232)
170 PRK11153 metN DL-methionine tr 98.9 5.9E-09 1.3E-13 92.6 10.5 146 49-209 20-205 (343)
171 PRK13631 cbiO cobalt transport 98.9 4.6E-10 1E-14 98.6 3.3 48 49-100 41-88 (320)
172 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 1.1E-08 2.4E-13 79.5 10.6 109 55-208 20-130 (144)
173 PRK13646 cbiO cobalt transport 98.9 4.1E-10 8.9E-15 97.6 2.8 50 48-101 21-70 (286)
174 cd03292 ABC_FtsE_transporter F 98.9 4.8E-10 1E-14 92.9 3.1 48 50-101 17-64 (214)
175 cd03223 ABCD_peroxisomal_ALDP 98.9 2.4E-09 5.3E-14 85.2 7.0 128 50-206 17-149 (166)
176 cd03262 ABC_HisP_GlnQ_permease 98.9 1E-09 2.3E-14 90.8 5.0 44 55-101 20-63 (213)
177 PRK11701 phnK phosphonate C-P 98.9 5.7E-09 1.2E-13 89.1 9.6 44 55-101 26-69 (258)
178 cd03218 ABC_YhbG The ABC trans 98.9 6.6E-10 1.4E-14 93.3 3.7 49 49-101 15-63 (232)
179 PRK09544 znuC high-affinity zi 98.9 3.6E-09 7.9E-14 89.9 8.2 137 56-209 25-185 (251)
180 cd03235 ABC_Metallic_Cations A 98.9 4.4E-10 9.6E-15 93.1 2.5 49 49-101 14-62 (213)
181 cd03266 ABC_NatA_sodium_export 98.9 3.6E-10 7.8E-15 94.0 1.9 48 50-101 21-68 (218)
182 cd03225 ABC_cobalt_CbiO_domain 98.9 1E-09 2.2E-14 90.9 4.4 44 55-101 21-64 (211)
183 KOG0058|consensus 98.9 6.6E-09 1.4E-13 97.1 10.2 60 48-111 482-543 (716)
184 PRK11000 maltose/maltodextrin 98.9 4.2E-10 9.2E-15 100.7 2.3 144 50-208 19-197 (369)
185 TIGR03005 ectoine_ehuA ectoine 98.9 4.7E-09 1E-13 89.3 8.5 44 55-101 20-63 (252)
186 PRK13642 cbiO cobalt transport 98.9 3.4E-09 7.3E-14 91.4 7.7 146 49-209 22-205 (277)
187 cd03232 ABC_PDR_domain2 The pl 98.9 1.6E-09 3.4E-14 88.4 5.3 137 50-206 23-169 (192)
188 PRK13640 cbiO cobalt transport 98.9 3.7E-09 8.1E-14 91.4 7.9 146 49-208 22-207 (282)
189 PRK13539 cytochrome c biogenes 98.9 1.2E-08 2.6E-13 84.2 10.5 144 49-209 17-191 (207)
190 TIGR02868 CydC thiol reductant 98.9 3.3E-09 7.1E-14 99.7 8.0 130 56-204 356-528 (529)
191 PRK13639 cbiO cobalt transport 98.9 8.5E-10 1.8E-14 95.1 3.7 49 49-101 17-65 (275)
192 TIGR03410 urea_trans_UrtE urea 98.9 1.1E-08 2.4E-13 85.8 10.3 146 49-209 15-196 (230)
193 TIGR02673 FtsE cell division A 98.9 1.2E-09 2.6E-14 90.6 4.3 49 49-101 17-65 (214)
194 PRK10908 cell division protein 98.9 8.8E-10 1.9E-14 91.9 3.5 49 49-101 17-65 (222)
195 cd03237 ABC_RNaseL_inhibitor_d 98.9 2.2E-08 4.7E-13 84.8 11.8 138 55-209 19-180 (246)
196 cd03217 ABC_FeS_Assembly ABC-t 98.9 5.5E-09 1.2E-13 85.7 7.9 139 49-208 15-167 (200)
197 cd03224 ABC_TM1139_LivF_branch 98.9 7E-10 1.5E-14 92.5 2.6 49 49-101 15-63 (222)
198 PRK13538 cytochrome c biogenes 98.9 2.3E-09 5E-14 88.2 5.6 44 55-101 21-64 (204)
199 cd03269 ABC_putative_ATPase Th 98.9 1.1E-09 2.5E-14 90.5 3.7 43 56-101 21-63 (210)
200 PRK13540 cytochrome c biogenes 98.9 2.1E-08 4.6E-13 82.2 11.2 141 55-210 21-192 (200)
201 PRK10575 iron-hydroxamate tran 98.9 4.4E-09 9.6E-14 90.1 7.5 145 49-209 26-212 (265)
202 cd03260 ABC_PstB_phosphate_tra 98.9 1.8E-09 3.9E-14 90.4 4.9 52 49-101 15-68 (227)
203 TIGR03415 ABC_choXWV_ATP choli 98.9 1.3E-09 2.7E-14 97.6 4.1 140 55-208 44-228 (382)
204 TIGR02982 heterocyst_DevA ABC 98.9 6.7E-09 1.5E-13 86.5 8.2 48 50-101 21-68 (220)
205 PRK13634 cbiO cobalt transport 98.9 7E-10 1.5E-14 96.3 2.3 146 48-208 21-209 (290)
206 cd03267 ABC_NatA_like Similar 98.9 1.2E-08 2.6E-13 86.0 9.8 48 49-100 36-83 (236)
207 TIGR01277 thiQ thiamine ABC tr 98.9 7.9E-09 1.7E-13 85.6 8.5 139 55-208 18-192 (213)
208 PRK11831 putative ABC transpor 98.9 6.3E-09 1.4E-13 89.4 8.2 48 50-101 23-70 (269)
209 cd03300 ABC_PotA_N PotA is an 98.9 1.1E-08 2.3E-13 86.0 9.2 42 56-100 21-62 (232)
210 cd03226 ABC_cobalt_CbiO_domain 98.9 8.5E-10 1.8E-14 90.9 2.3 49 49-101 15-63 (205)
211 PRK15079 oligopeptide ABC tran 98.9 2E-09 4.2E-14 95.0 4.7 50 49-102 36-85 (331)
212 TIGR03771 anch_rpt_ABC anchore 98.9 4E-09 8.7E-14 88.1 6.3 41 58-101 3-43 (223)
213 PRK13645 cbiO cobalt transport 98.9 3.5E-09 7.5E-14 91.9 6.2 48 49-100 26-73 (289)
214 PRK13644 cbiO cobalt transport 98.9 1.7E-09 3.7E-14 93.1 4.2 49 49-101 17-65 (274)
215 PRK13632 cbiO cobalt transport 98.9 5.8E-09 1.2E-13 89.7 7.4 145 49-208 24-206 (271)
216 TIGR00968 3a0106s01 sulfate AB 98.9 1E-08 2.3E-13 86.3 8.9 138 56-208 21-194 (237)
217 PRK13641 cbiO cobalt transport 98.9 1.4E-09 3E-14 94.3 3.5 49 49-101 22-70 (287)
218 PRK09536 btuD corrinoid ABC tr 98.9 1.9E-09 4E-14 97.2 4.5 144 49-209 18-203 (402)
219 PRK14250 phosphate ABC transpo 98.9 1.1E-08 2.3E-13 86.5 8.7 141 55-209 23-196 (241)
220 PRK13638 cbiO cobalt transport 98.9 1.4E-09 3.1E-14 93.5 3.4 49 49-101 16-64 (271)
221 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 2E-09 4.4E-14 89.9 4.0 43 55-100 42-84 (224)
222 TIGR02324 CP_lyasePhnL phospho 98.8 4.3E-08 9.4E-13 81.8 11.9 47 49-99 23-69 (224)
223 PRK10895 lipopolysaccharide AB 98.8 2.8E-09 6E-14 90.1 4.7 44 55-101 23-66 (241)
224 TIGR02323 CP_lyasePhnK phospho 98.8 3.1E-08 6.7E-13 84.3 11.2 48 50-101 19-66 (253)
225 cd03264 ABC_drug_resistance_li 98.8 2.4E-09 5.2E-14 88.6 4.2 48 49-101 15-62 (211)
226 cd03263 ABC_subfamily_A The AB 98.8 1.5E-09 3.2E-14 90.4 2.9 49 49-101 17-65 (220)
227 cd03299 ABC_ModC_like Archeal 98.8 1.3E-08 2.8E-13 85.7 8.7 43 56-101 20-62 (235)
228 PRK11300 livG leucine/isoleuci 98.8 7.2E-09 1.6E-13 88.3 7.2 44 55-101 25-68 (255)
229 TIGR01288 nodI ATP-binding ABC 98.8 8E-10 1.7E-14 96.6 1.3 49 49-101 19-67 (303)
230 PRK15093 antimicrobial peptide 98.8 8.5E-09 1.8E-13 91.1 7.8 162 49-223 22-239 (330)
231 TIGR01189 ccmA heme ABC export 98.8 2.8E-08 6.1E-13 81.4 10.2 48 50-101 16-63 (198)
232 cd03297 ABC_ModC_molybdenum_tr 98.8 4.3E-09 9.3E-14 87.3 5.4 137 57-209 20-196 (214)
233 PRK13543 cytochrome c biogenes 98.8 2.4E-08 5.2E-13 82.8 9.8 44 55-101 31-74 (214)
234 TIGR02142 modC_ABC molybdenum 98.8 1E-09 2.3E-14 97.8 1.8 138 56-208 18-195 (354)
235 cd03238 ABC_UvrA The excision 98.8 3.9E-08 8.5E-13 78.8 10.7 135 49-208 10-152 (176)
236 COG4615 PvdE ABC-type sideroph 98.8 1.7E-08 3.7E-13 88.3 9.1 136 57-210 345-514 (546)
237 PRK13541 cytochrome c biogenes 98.8 8.6E-09 1.9E-13 84.2 7.0 44 55-101 20-63 (195)
238 TIGR03522 GldA_ABC_ATP gliding 98.8 3.1E-09 6.8E-14 92.7 4.6 50 49-102 17-66 (301)
239 cd03257 ABC_NikE_OppD_transpor 98.8 2.6E-08 5.6E-13 83.4 9.9 48 50-101 21-68 (228)
240 PRK11124 artP arginine transpo 98.8 4E-09 8.8E-14 89.1 5.1 44 55-101 22-65 (242)
241 PRK11614 livF leucine/isoleuci 98.8 1.6E-09 3.5E-14 91.3 2.5 49 49-101 20-68 (237)
242 PRK15112 antimicrobial peptide 98.8 1.2E-08 2.7E-13 87.4 8.0 49 49-101 28-76 (267)
243 cd03295 ABC_OpuCA_Osmoprotecti 98.8 2.8E-09 6.1E-14 90.1 3.9 48 50-101 17-64 (242)
244 PRK09984 phosphonate/organopho 98.8 8.1E-09 1.7E-13 88.4 6.8 46 55-101 24-70 (262)
245 cd03369 ABCC_NFT1 Domain 2 of 98.8 2E-08 4.3E-13 82.8 8.9 143 49-208 23-187 (207)
246 PRK11264 putative amino-acid A 98.8 2.3E-09 4.9E-14 91.1 3.2 49 49-101 18-66 (250)
247 COG4618 ArpD ABC-type protease 98.8 1.9E-08 4E-13 90.6 8.9 162 49-230 351-558 (580)
248 KOG0056|consensus 98.8 4.4E-08 9.5E-13 87.9 11.2 203 12-233 504-762 (790)
249 PRK10790 putative multidrug tr 98.8 7E-09 1.5E-13 98.9 6.6 141 55-210 361-509 (592)
250 TIGR00972 3a0107s01c2 phosphat 98.8 3.4E-09 7.4E-14 89.9 4.1 44 55-101 21-69 (247)
251 cd03233 ABC_PDR_domain1 The pl 98.8 1.3E-08 2.8E-13 83.7 7.3 138 55-206 27-181 (202)
252 KOG0061|consensus 98.8 1.2E-08 2.7E-13 96.8 8.2 145 49-207 45-233 (613)
253 PRK11174 cysteine/glutathione 98.8 9.2E-09 2E-13 98.0 7.2 137 56-209 371-548 (588)
254 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 8E-09 1.7E-13 100.1 6.8 141 55-210 473-621 (686)
255 cd03253 ABCC_ATM1_transporter 98.8 1.6E-08 3.6E-13 85.0 7.9 44 55-101 21-64 (236)
256 cd03251 ABCC_MsbA MsbA is an e 98.8 1.5E-08 3.3E-13 85.1 7.7 49 49-101 17-65 (234)
257 TIGR03375 type_I_sec_LssB type 98.8 7.3E-09 1.6E-13 100.5 6.5 138 56-209 486-664 (694)
258 TIGR02769 nickel_nikE nickel i 98.8 3.3E-08 7.2E-13 84.7 9.8 49 49-101 26-74 (265)
259 COG4987 CydC ABC-type transpor 98.8 1.9E-08 4.1E-13 91.1 8.5 166 49-230 353-526 (573)
260 COG4175 ProV ABC-type proline/ 98.8 3.1E-08 6.7E-13 84.4 9.2 165 56-234 49-256 (386)
261 PRK10253 iron-enterobactin tra 98.8 3.8E-08 8.3E-13 84.3 10.1 145 49-209 22-208 (265)
262 TIGR03873 F420-0_ABC_ATP propo 98.8 6.4E-09 1.4E-13 88.7 5.1 49 49-101 16-64 (256)
263 PRK15056 manganese/iron transp 98.8 1.5E-08 3.2E-13 87.2 7.3 49 49-101 22-70 (272)
264 PRK13649 cbiO cobalt transport 98.8 3.5E-09 7.7E-14 91.5 3.4 49 49-101 22-70 (280)
265 cd03252 ABCC_Hemolysin The ABC 98.8 2.2E-08 4.8E-13 84.3 8.2 49 49-101 17-65 (237)
266 cd00544 CobU Adenosylcobinamid 98.8 1.6E-07 3.4E-12 74.8 12.5 91 63-169 1-91 (169)
267 COG0396 sufC Cysteine desulfur 98.8 1.6E-08 3.5E-13 82.4 6.8 46 56-102 25-70 (251)
268 cd03254 ABCC_Glucan_exporter_l 98.8 2.1E-08 4.5E-13 84.0 7.7 49 49-101 18-66 (229)
269 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 9E-09 2E-13 100.1 6.1 141 55-210 499-648 (710)
270 PRK05800 cobU adenosylcobinami 98.8 1.3E-07 2.9E-12 75.3 11.7 91 62-167 2-92 (170)
271 PRK13547 hmuV hemin importer A 98.8 4.7E-08 1E-12 84.0 9.7 49 49-101 16-72 (272)
272 COG4152 ABC-type uncharacteriz 98.8 2.3E-08 5E-13 82.2 7.2 137 55-210 22-195 (300)
273 PRK10619 histidine/lysine/argi 98.8 8.5E-09 1.8E-13 88.0 5.0 49 49-101 20-68 (257)
274 cd03244 ABCC_MRP_domain2 Domai 98.8 2.8E-08 6.1E-13 82.7 7.9 49 49-101 19-67 (221)
275 PRK11160 cysteine/glutathione 98.8 2.7E-08 5.8E-13 94.5 8.6 48 50-101 356-403 (574)
276 TIGR02857 CydD thiol reductant 98.8 3.1E-08 6.6E-13 93.2 9.0 142 50-208 338-520 (529)
277 PRK11176 lipid transporter ATP 98.8 1.7E-08 3.7E-13 96.0 7.3 141 55-210 363-513 (582)
278 PRK13657 cyclic beta-1,2-gluca 98.8 2E-08 4.3E-13 95.7 7.7 138 56-209 356-534 (588)
279 TIGR02770 nickel_nikD nickel i 98.8 1.4E-08 2.9E-13 85.3 5.8 42 57-101 8-53 (230)
280 TIGR00958 3a01208 Conjugate Tr 98.7 1.6E-08 3.4E-13 98.3 7.0 141 55-210 501-650 (711)
281 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 3.3E-08 7.1E-13 83.4 8.0 49 49-101 18-66 (238)
282 cd03250 ABCC_MRP_domain1 Domai 98.7 1.3E-08 2.9E-13 83.7 5.5 45 49-97 20-64 (204)
283 TIGR03740 galliderm_ABC gallid 98.7 4.4E-09 9.5E-14 87.8 2.7 42 56-100 21-62 (223)
284 PRK13548 hmuV hemin importer A 98.7 8.8E-09 1.9E-13 87.9 4.6 47 50-100 18-64 (258)
285 PRK10419 nikE nickel transport 98.7 6.7E-08 1.5E-12 83.0 10.0 44 55-101 32-75 (268)
286 COG4107 PhnK ABC-type phosphon 98.7 1.6E-07 3.4E-12 73.6 10.9 160 56-232 27-241 (258)
287 PRK15439 autoinducer 2 ABC tra 98.7 1.1E-08 2.4E-13 95.7 5.5 144 49-209 26-204 (510)
288 PRK13546 teichoic acids export 98.7 5E-09 1.1E-13 89.6 2.9 47 49-99 39-85 (264)
289 TIGR03411 urea_trans_UrtD urea 98.7 7.6E-09 1.6E-13 87.4 3.9 49 49-101 17-65 (242)
290 PRK10762 D-ribose transporter 98.7 9.1E-09 2E-13 96.1 4.8 49 49-101 19-67 (501)
291 TIGR01193 bacteriocin_ABC ABC- 98.7 1.7E-08 3.7E-13 98.1 6.9 141 55-210 494-644 (708)
292 COG4988 CydD ABC-type transpor 98.7 4.5E-08 9.7E-13 89.7 9.1 138 57-210 343-520 (559)
293 cd03290 ABCC_SUR1_N The SUR do 98.7 2.9E-08 6.3E-13 82.5 7.3 49 49-101 16-64 (218)
294 KOG0055|consensus 98.7 2.4E-08 5.2E-13 98.6 7.8 154 57-230 375-574 (1228)
295 PRK10982 galactose/methyl gala 98.7 9.9E-09 2.2E-13 95.6 4.9 49 49-101 13-61 (491)
296 PRK10261 glutathione transport 98.7 1.5E-08 3.2E-13 97.0 6.2 159 49-223 339-544 (623)
297 PF13479 AAA_24: AAA domain 98.7 8.6E-08 1.9E-12 79.4 10.0 124 61-209 3-141 (213)
298 PRK10418 nikD nickel transport 98.7 1.6E-08 3.4E-13 86.2 5.7 43 55-100 23-69 (254)
299 PF13401 AAA_22: AAA domain; P 98.7 4.8E-08 1E-12 74.3 7.7 121 59-204 2-125 (131)
300 COG4674 Uncharacterized ABC-ty 98.7 1.5E-08 3.3E-13 80.6 4.9 51 46-100 17-67 (249)
301 COG1137 YhbG ABC-type (unclass 98.7 9.6E-09 2.1E-13 82.0 3.6 157 57-228 26-224 (243)
302 PRK11231 fecE iron-dicitrate t 98.7 2.3E-08 5E-13 85.2 6.2 44 55-101 22-65 (255)
303 TIGR02203 MsbA_lipidA lipid A 98.7 5.1E-08 1.1E-12 92.6 9.2 138 56-209 353-532 (571)
304 COG1132 MdlB ABC-type multidru 98.7 1.8E-08 4E-13 95.5 6.2 155 40-210 331-498 (567)
305 PRK10789 putative multidrug tr 98.7 4.7E-08 1E-12 92.7 8.9 44 55-101 335-378 (569)
306 cd03245 ABCC_bacteriocin_expor 98.7 3.3E-08 7.1E-13 82.3 6.9 44 55-101 24-67 (220)
307 PRK03695 vitamin B12-transport 98.7 1.7E-08 3.6E-13 85.7 5.0 43 55-101 16-58 (248)
308 PRK09700 D-allose transporter 98.7 1.4E-08 3E-13 95.1 4.9 49 49-101 20-68 (510)
309 TIGR01846 type_I_sec_HlyB type 98.7 4.2E-08 9.1E-13 95.2 8.4 143 50-209 473-656 (694)
310 TIGR02204 MsbA_rel ABC transpo 98.7 5.4E-08 1.2E-12 92.5 9.0 43 56-101 361-403 (576)
311 KOG0057|consensus 98.7 6.2E-08 1.4E-12 87.9 8.6 85 55-143 372-463 (591)
312 PRK11288 araG L-arabinose tran 98.7 1.3E-08 2.7E-13 95.2 4.3 49 49-101 19-67 (501)
313 PRK13549 xylose transporter AT 98.7 1.6E-08 3.5E-13 94.6 4.9 50 49-101 20-70 (506)
314 COG4148 ModC ABC-type molybdat 98.7 2.5E-08 5.4E-13 83.5 5.4 140 57-210 20-194 (352)
315 PRK13409 putative ATPase RIL; 98.7 2.6E-08 5.7E-13 94.3 6.3 138 55-209 359-518 (590)
316 PRK09700 D-allose transporter 98.7 3E-08 6.6E-13 92.8 6.6 44 55-101 283-326 (510)
317 TIGR01192 chvA glucan exporter 98.7 5.3E-08 1.2E-12 92.6 8.3 43 56-101 356-398 (585)
318 PLN03130 ABC transporter C fam 98.7 3.4E-08 7.4E-13 103.1 7.1 157 55-227 1259-1456(1622)
319 PRK14270 phosphate ABC transpo 98.7 2E-08 4.4E-13 85.3 4.6 47 55-101 24-72 (251)
320 TIGR01842 type_I_sec_PrtD type 98.7 4.5E-08 9.7E-13 92.4 7.3 143 49-210 333-487 (544)
321 cd03236 ABC_RNaseL_inhibitor_d 98.7 3.8E-07 8.3E-12 77.6 12.3 44 48-96 15-58 (255)
322 PLN03232 ABC transporter C fam 98.7 3.5E-08 7.5E-13 102.7 6.9 156 56-227 1257-1453(1495)
323 PRK14235 phosphate transporter 98.7 2E-08 4.3E-13 86.2 4.3 52 49-101 34-87 (267)
324 PRK10744 pstB phosphate transp 98.7 2.5E-08 5.4E-13 85.2 4.8 52 49-101 28-81 (260)
325 PRK14258 phosphate ABC transpo 98.7 4.4E-08 9.6E-13 83.7 6.3 49 50-101 23-75 (261)
326 PRK14273 phosphate ABC transpo 98.7 2.6E-08 5.5E-13 84.9 4.8 51 49-101 22-75 (254)
327 cd03234 ABCG_White The White s 98.7 3.9E-08 8.4E-13 82.3 5.7 53 49-102 22-74 (226)
328 PRK15134 microcin C ABC transp 98.7 9.4E-08 2E-12 89.9 8.9 52 48-101 23-77 (529)
329 KOG0055|consensus 98.6 1.2E-07 2.6E-12 93.8 9.7 160 56-231 1011-1212(1228)
330 PRK14275 phosphate ABC transpo 98.6 2.5E-08 5.4E-13 86.4 4.5 47 55-101 59-107 (286)
331 cd03289 ABCC_CFTR2 The CFTR su 98.6 7.6E-08 1.6E-12 82.8 7.4 49 49-102 19-67 (275)
332 TIGR02858 spore_III_AA stage I 98.6 1.6E-07 3.4E-12 80.3 9.2 143 62-234 112-257 (270)
333 PRK10938 putative molybdenum t 98.6 6.5E-08 1.4E-12 90.2 7.5 49 49-101 18-66 (490)
334 COG4598 HisP ABC-type histidin 98.6 1.2E-07 2.5E-12 74.7 7.6 147 57-236 28-229 (256)
335 cd03283 ABC_MutS-like MutS-lik 98.6 4.1E-07 9E-12 74.5 11.2 30 57-86 21-50 (199)
336 PRK14268 phosphate ABC transpo 98.6 1.9E-08 4E-13 85.9 3.3 51 50-101 28-80 (258)
337 PRK14249 phosphate ABC transpo 98.6 6.1E-08 1.3E-12 82.4 6.5 48 50-101 20-72 (251)
338 PRK10522 multidrug transporter 98.6 1.6E-07 3.4E-12 88.8 9.9 44 55-101 343-386 (547)
339 cd03248 ABCC_TAP TAP, the Tran 98.6 7.6E-08 1.6E-12 80.5 6.8 49 49-101 29-77 (226)
340 PRK14274 phosphate ABC transpo 98.6 3.3E-08 7.2E-13 84.4 4.7 47 55-101 32-80 (259)
341 COG4138 BtuD ABC-type cobalami 98.6 8.9E-07 1.9E-11 69.5 12.1 136 55-206 19-193 (248)
342 PRK14242 phosphate transporter 98.6 3E-08 6.6E-13 84.3 4.3 52 49-101 21-74 (253)
343 PRK13545 tagH teichoic acids e 98.6 1.9E-08 4.2E-13 92.6 3.3 47 49-99 39-85 (549)
344 TIGR01978 sufC FeS assembly AT 98.6 2.5E-08 5.3E-13 84.3 3.6 46 55-101 20-65 (243)
345 PRK14240 phosphate transporter 98.6 4.2E-08 9.1E-13 83.3 5.1 47 55-101 23-71 (250)
346 PRK14269 phosphate ABC transpo 98.6 2.9E-08 6.3E-13 84.1 3.9 47 55-101 22-68 (246)
347 PTZ00265 multidrug resistance 98.6 5.9E-08 1.3E-12 100.4 6.7 149 49-210 1183-1391(1466)
348 COG4172 ABC-type uncharacteriz 98.6 7.6E-08 1.6E-12 84.5 6.2 172 56-238 31-253 (534)
349 PRK11288 araG L-arabinose tran 98.6 6.6E-08 1.4E-12 90.4 6.3 44 55-101 273-316 (501)
350 PRK14267 phosphate ABC transpo 98.6 3E-08 6.4E-13 84.4 3.6 51 49-101 19-72 (253)
351 TIGR01194 cyc_pep_trnsptr cycl 98.6 1.1E-07 2.5E-12 89.8 7.9 44 56-102 363-406 (555)
352 TIGR03269 met_CoM_red_A2 methy 98.6 5.2E-07 1.1E-11 84.8 12.2 49 150-209 185-233 (520)
353 PTZ00243 ABC transporter; Prov 98.6 6.4E-08 1.4E-12 100.9 6.6 49 50-102 1326-1374(1560)
354 PRK14251 phosphate ABC transpo 98.6 3.4E-08 7.4E-13 83.9 3.8 47 55-101 24-72 (251)
355 PRK14271 phosphate ABC transpo 98.6 7.3E-08 1.6E-12 83.1 5.9 46 55-101 41-89 (276)
356 TIGR00957 MRP_assoc_pro multi 98.6 7.2E-08 1.6E-12 100.5 6.9 154 56-225 1307-1501(1522)
357 PRK10261 glutathione transport 98.6 3.8E-08 8.3E-13 94.2 4.4 48 48-99 30-77 (623)
358 PRK14256 phosphate ABC transpo 98.6 4.3E-08 9.4E-13 83.3 4.2 51 50-101 20-72 (252)
359 COG4525 TauB ABC-type taurine 98.6 1E-06 2.2E-11 70.4 11.5 47 49-99 20-66 (259)
360 PRK10762 D-ribose transporter 98.6 6.7E-08 1.5E-12 90.3 5.7 44 55-101 272-315 (501)
361 PRK14257 phosphate ABC transpo 98.6 4.5E-08 9.8E-13 86.3 4.3 48 55-102 102-151 (329)
362 PRK14244 phosphate ABC transpo 98.6 3.9E-08 8.5E-13 83.6 3.7 51 49-100 20-72 (251)
363 cd03288 ABCC_SUR2 The SUR doma 98.6 1.4E-07 3.1E-12 80.4 7.2 49 49-101 36-84 (257)
364 COG1245 Predicted ATPase, RNas 98.6 2.6E-07 5.5E-12 82.4 8.7 148 43-210 341-521 (591)
365 KOG0734|consensus 98.6 1.9E-07 4.1E-12 84.5 7.9 122 53-209 331-453 (752)
366 PRK14247 phosphate ABC transpo 98.6 6.3E-08 1.4E-12 82.2 4.8 52 49-101 18-71 (250)
367 TIGR03269 met_CoM_red_A2 methy 98.6 1E-07 2.2E-12 89.5 6.7 46 49-98 299-344 (520)
368 PRK14263 phosphate ABC transpo 98.6 1.7E-07 3.7E-12 80.1 7.3 51 50-101 24-76 (261)
369 PRK09580 sufC cysteine desulfu 98.6 3.8E-07 8.3E-12 77.3 9.4 51 49-101 16-66 (248)
370 PRK14239 phosphate transporter 98.6 5.5E-08 1.2E-12 82.7 4.2 47 55-101 25-73 (252)
371 PRK14245 phosphate ABC transpo 98.6 7.2E-08 1.6E-12 81.9 4.8 47 55-101 23-71 (250)
372 COG1101 PhnK ABC-type uncharac 98.6 6.5E-07 1.4E-11 72.5 9.9 148 44-209 12-213 (263)
373 PRK14261 phosphate ABC transpo 98.6 7.1E-08 1.5E-12 82.1 4.8 52 49-101 21-74 (253)
374 PF07088 GvpD: GvpD gas vesicl 98.6 1.1E-06 2.4E-11 77.2 12.0 142 58-209 7-161 (484)
375 PRK04296 thymidine kinase; Pro 98.6 6.6E-07 1.4E-11 72.8 10.1 116 61-208 2-119 (190)
376 smart00382 AAA ATPases associa 98.6 6E-07 1.3E-11 68.2 9.4 40 60-102 1-41 (148)
377 PRK13549 xylose transporter AT 98.5 1E-07 2.3E-12 89.1 5.9 49 49-100 277-325 (506)
378 TIGR02633 xylG D-xylose ABC tr 98.5 6.2E-08 1.3E-12 90.5 4.3 49 49-100 16-65 (500)
379 PRK14262 phosphate ABC transpo 98.5 9.6E-08 2.1E-12 81.1 5.1 52 49-101 18-71 (250)
380 PRK14236 phosphate transporter 98.5 6.4E-08 1.4E-12 83.3 4.1 47 55-101 45-93 (272)
381 PRK14248 phosphate ABC transpo 98.5 1.2E-07 2.6E-12 81.4 5.7 52 49-101 36-89 (268)
382 PRK14259 phosphate ABC transpo 98.5 1.4E-07 3.1E-12 81.0 6.2 52 49-101 28-81 (269)
383 PRK15177 Vi polysaccharide exp 98.5 6.4E-08 1.4E-12 80.2 3.9 32 55-86 7-38 (213)
384 PRK10982 galactose/methyl gala 98.5 1.7E-07 3.6E-12 87.5 6.9 48 50-101 264-311 (491)
385 PRK14238 phosphate transporter 98.5 1.2E-07 2.5E-12 81.6 5.5 46 55-100 44-91 (271)
386 CHL00131 ycf16 sulfate ABC tra 98.5 9.4E-07 2E-11 75.1 11.0 50 49-100 22-71 (252)
387 PF05621 TniB: Bacterial TniB 98.5 1.4E-06 3E-11 74.7 11.9 120 63-202 63-187 (302)
388 PRK14253 phosphate ABC transpo 98.5 1.5E-07 3.3E-12 79.9 6.0 51 49-101 18-71 (249)
389 PRK14272 phosphate ABC transpo 98.5 6.3E-08 1.4E-12 82.3 3.7 51 49-101 19-72 (252)
390 TIGR00955 3a01204 The Eye Pigm 98.5 1.9E-07 4.2E-12 89.3 7.3 53 48-101 39-91 (617)
391 PRK14237 phosphate transporter 98.5 9.5E-08 2.1E-12 82.0 4.7 52 49-101 35-88 (267)
392 PRK15134 microcin C ABC transp 98.5 5E-08 1.1E-12 91.7 2.9 48 49-101 301-348 (529)
393 PRK15064 ABC transporter ATP-b 98.5 7.7E-07 1.7E-11 83.8 10.9 46 49-98 16-61 (530)
394 PRK14265 phosphate ABC transpo 98.5 1.7E-07 3.7E-12 80.7 5.9 47 55-101 40-88 (274)
395 COG4167 SapF ABC-type antimicr 98.5 1.2E-06 2.5E-11 69.3 9.9 163 56-236 34-243 (267)
396 COG4136 ABC-type uncharacteriz 98.5 8E-07 1.7E-11 68.0 8.8 47 56-102 23-69 (213)
397 PRK14241 phosphate transporter 98.5 1E-07 2.2E-12 81.3 4.5 52 49-101 19-72 (258)
398 TIGR01257 rim_protein retinal- 98.5 4.4E-07 9.6E-12 95.6 9.9 147 48-210 1953-2135(2272)
399 PRK14243 phosphate transporter 98.5 2E-07 4.3E-12 79.9 6.2 51 50-101 26-78 (264)
400 TIGR01271 CFTR_protein cystic 98.5 1.8E-07 3.8E-12 97.4 6.7 157 57-230 1241-1438(1490)
401 PRK14260 phosphate ABC transpo 98.5 1.3E-07 2.8E-12 80.7 4.8 46 55-100 27-74 (259)
402 PRK14254 phosphate ABC transpo 98.5 1.7E-07 3.6E-12 81.2 5.3 47 55-101 59-107 (285)
403 PRK10535 macrolide transporter 98.5 1.2E-06 2.7E-11 84.2 11.6 45 55-102 28-72 (648)
404 PRK13409 putative ATPase RIL; 98.5 2.3E-07 5E-12 88.0 6.4 43 49-96 89-131 (590)
405 PRK10938 putative molybdenum t 98.5 1.1E-06 2.4E-11 81.9 10.8 48 50-100 276-323 (490)
406 PTZ00265 multidrug resistance 98.5 3.6E-07 7.7E-12 94.8 8.1 47 49-99 400-446 (1466)
407 COG3854 SpoIIIAA ncharacterize 98.5 9.4E-07 2E-11 72.3 8.7 148 59-239 134-286 (308)
408 PRK14255 phosphate ABC transpo 98.5 1.1E-07 2.5E-12 80.8 3.6 47 55-101 25-73 (252)
409 COG4133 CcmA ABC-type transpor 98.5 3.4E-06 7.4E-11 66.9 11.5 69 57-128 24-98 (209)
410 PRK15439 autoinducer 2 ABC tra 98.5 2.1E-07 4.5E-12 87.2 5.6 47 50-100 279-325 (510)
411 KOG0744|consensus 98.5 5.5E-07 1.2E-11 77.0 7.5 133 57-210 173-312 (423)
412 PRK14264 phosphate ABC transpo 98.5 5.2E-07 1.1E-11 78.9 7.6 52 49-101 60-113 (305)
413 PF00004 AAA: ATPase family as 98.5 7.2E-07 1.6E-11 67.6 7.6 115 64-209 1-116 (132)
414 PLN03211 ABC transporter G-25; 98.5 1.3E-07 2.8E-12 90.8 4.1 52 48-101 82-133 (659)
415 TIGR02633 xylG D-xylose ABC tr 98.5 2.9E-07 6.3E-12 86.0 6.3 50 49-101 275-324 (500)
416 PRK14246 phosphate ABC transpo 98.5 2.3E-07 5E-12 79.1 5.2 37 49-86 25-61 (257)
417 PRK14722 flhF flagellar biosyn 98.5 1.1E-06 2.5E-11 78.1 9.7 144 5-163 81-227 (374)
418 TIGR00956 3a01205 Pleiotropic 98.4 2.9E-07 6.2E-12 95.2 6.5 52 49-101 778-829 (1394)
419 TIGR01187 potA spermidine/putr 98.4 5.2E-08 1.1E-12 85.9 1.0 48 150-208 117-164 (325)
420 PRK07721 fliI flagellum-specif 98.4 3E-06 6.6E-11 77.2 12.2 158 40-207 139-318 (438)
421 PRK12727 flagellar biosynthesi 98.4 7.7E-06 1.7E-10 75.4 14.7 141 5-163 299-440 (559)
422 PRK14266 phosphate ABC transpo 98.4 4.7E-07 1E-11 76.9 6.3 47 55-101 23-71 (250)
423 PLN03232 ABC transporter C fam 98.4 2.4E-07 5.1E-12 96.6 5.2 134 55-210 637-773 (1495)
424 cd03243 ABC_MutS_homologs The 98.4 2.3E-06 5E-11 70.3 10.1 28 58-85 26-53 (202)
425 PRK10636 putative ABC transpor 98.4 2.1E-06 4.6E-11 82.5 11.2 47 49-99 16-62 (638)
426 COG1119 ModF ABC-type molybden 98.4 2.1E-06 4.5E-11 71.0 9.6 48 49-100 46-93 (257)
427 PLN03140 ABC transporter G fam 98.4 2.3E-07 4.9E-12 96.0 4.6 51 46-100 177-230 (1470)
428 COG1222 RPT1 ATP-dependent 26S 98.4 2.3E-06 5.1E-11 74.2 9.9 134 44-210 170-305 (406)
429 PRK15064 ABC transporter ATP-b 98.4 2.1E-06 4.6E-11 80.8 10.7 39 56-97 340-378 (530)
430 PLN03130 ABC transporter C fam 98.4 3.5E-07 7.6E-12 95.7 5.6 133 55-210 637-773 (1622)
431 cd00009 AAA The AAA+ (ATPases 98.4 6.3E-06 1.4E-10 63.0 11.3 41 60-102 18-58 (151)
432 PRK11889 flhF flagellar biosyn 98.4 6.4E-06 1.4E-10 73.3 12.5 144 5-163 185-332 (436)
433 TIGR01257 rim_protein retinal- 98.4 1.9E-06 4E-11 91.1 10.6 50 49-102 945-994 (2272)
434 TIGR01618 phage_P_loop phage n 98.4 2.7E-06 5.8E-11 70.4 9.5 124 61-206 12-144 (220)
435 cd03291 ABCC_CFTR1 The CFTR su 98.4 2.4E-06 5.1E-11 73.8 9.5 31 55-85 57-87 (282)
436 PRK12726 flagellar biosynthesi 98.4 8.5E-06 1.9E-10 72.2 13.0 143 5-163 149-297 (407)
437 PRK14252 phosphate ABC transpo 98.4 5.8E-07 1.3E-11 77.0 5.5 44 56-100 37-83 (265)
438 COG0488 Uup ATPase components 98.4 3.3E-06 7.2E-11 78.7 10.6 32 55-86 23-54 (530)
439 PRK11147 ABC transporter ATPas 98.3 4.3E-06 9.4E-11 80.4 11.6 47 49-99 18-64 (635)
440 KOG0054|consensus 98.3 1.4E-06 2.9E-11 88.2 8.1 163 50-232 1152-1362(1381)
441 TIGR00954 3a01203 Peroxysomal 98.3 6.9E-07 1.5E-11 86.1 5.8 41 55-98 472-512 (659)
442 KOG0733|consensus 98.3 2.9E-06 6.2E-11 78.2 9.2 119 56-206 218-338 (802)
443 TIGR00956 3a01205 Pleiotropic 98.3 2.8E-06 6.1E-11 88.0 10.1 52 49-101 76-128 (1394)
444 cd03278 ABC_SMC_barmotin Barmo 98.3 8E-06 1.7E-10 66.8 10.8 28 57-85 19-46 (197)
445 PLN03140 ABC transporter G fam 98.3 9.8E-07 2.1E-11 91.4 6.4 52 48-101 894-945 (1470)
446 KOG0066|consensus 98.3 6.9E-06 1.5E-10 73.2 10.5 148 42-210 591-766 (807)
447 PRK11819 putative ABC transpor 98.3 1E-06 2.2E-11 83.4 5.8 37 49-86 22-58 (556)
448 COG2401 ABC-type ATPase fused 98.3 3.6E-06 7.9E-11 74.4 8.6 138 56-210 404-573 (593)
449 cd03227 ABC_Class2 ABC-type Cl 98.3 1.1E-05 2.4E-10 63.8 10.8 122 59-209 19-145 (162)
450 KOG0065|consensus 98.3 1E-06 2.2E-11 87.7 5.7 145 49-208 806-994 (1391)
451 cd03280 ABC_MutS2 MutS2 homolo 98.3 9.8E-07 2.1E-11 72.4 4.9 26 58-83 24-50 (200)
452 COG0488 Uup ATPase components 98.3 5.2E-06 1.1E-10 77.3 10.1 137 55-210 342-501 (530)
453 PRK11147 ABC transporter ATPas 98.3 8.5E-06 1.8E-10 78.4 11.9 39 56-97 340-378 (635)
454 PF13173 AAA_14: AAA domain 98.3 3.7E-06 8.1E-11 63.8 7.5 100 61-208 2-102 (128)
455 KOG0060|consensus 98.3 1E-05 2.2E-10 74.3 11.5 32 55-86 455-486 (659)
456 PRK10636 putative ABC transpor 98.3 3.7E-06 8.1E-11 80.8 9.2 30 56-85 333-362 (638)
457 PRK10416 signal recognition pa 98.3 1.1E-05 2.3E-10 70.8 11.1 39 59-100 112-151 (318)
458 cd03279 ABC_sbcCD SbcCD and ot 98.3 1.1E-05 2.4E-10 66.8 10.7 48 150-209 150-197 (213)
459 COG2087 CobU Adenosyl cobinami 98.3 2.8E-05 6.1E-10 60.4 11.9 131 63-208 2-134 (175)
460 COG5265 ATM1 ABC-type transpor 98.2 1.5E-05 3.3E-10 70.7 11.7 155 57-229 285-483 (497)
461 COG4161 ArtP ABC-type arginine 98.2 4.1E-05 8.9E-10 59.5 12.5 41 57-100 24-64 (242)
462 PTZ00454 26S protease regulato 98.2 9.8E-06 2.1E-10 73.2 10.7 122 57-209 175-298 (398)
463 PLN03073 ABC transporter F fam 98.2 8.9E-06 1.9E-10 78.9 10.9 31 55-85 529-559 (718)
464 PRK06731 flhF flagellar biosyn 98.2 5.9E-05 1.3E-09 64.5 14.7 93 60-163 74-166 (270)
465 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 1E-06 2.3E-11 83.3 4.2 37 49-86 20-56 (552)
466 COG4778 PhnL ABC-type phosphon 98.2 6.9E-06 1.5E-10 64.3 7.9 50 48-101 25-74 (235)
467 PF00931 NB-ARC: NB-ARC domain 98.2 1.2E-05 2.6E-10 69.5 10.0 123 59-206 17-140 (287)
468 TIGR00957 MRP_assoc_pro multi 98.2 1.8E-06 3.9E-11 90.3 5.4 135 50-210 654-793 (1522)
469 cd03282 ABC_MSH4_euk MutS4 hom 98.2 2.1E-05 4.5E-10 64.7 10.6 30 57-86 25-54 (204)
470 cd03240 ABC_Rad50 The catalyti 98.2 1.2E-06 2.6E-11 72.0 3.2 47 150-207 138-185 (204)
471 cd03287 ABC_MSH3_euk MutS3 hom 98.2 2E-05 4.3E-10 65.6 10.4 30 57-86 27-56 (222)
472 TIGR03689 pup_AAA proteasome A 98.2 1E-05 2.3E-10 74.8 9.5 31 56-86 211-241 (512)
473 TIGR03499 FlhF flagellar biosy 98.2 1.3E-05 2.9E-10 69.2 9.6 135 5-160 141-281 (282)
474 PLN03073 ABC transporter F fam 98.2 1.5E-05 3.3E-10 77.3 10.9 46 55-100 197-243 (718)
475 PRK08084 DNA replication initi 98.2 1.7E-05 3.8E-10 66.7 9.9 40 60-101 44-83 (235)
476 PF00005 ABC_tran: ABC transpo 98.1 1.1E-06 2.3E-11 67.4 2.2 43 57-102 7-49 (137)
477 KOG2355|consensus 98.1 6.8E-05 1.5E-09 60.6 12.3 50 150-210 164-213 (291)
478 PF02283 CobU: Cobinamide kina 98.1 3.8E-06 8.3E-11 66.6 5.2 128 64-208 1-128 (167)
479 cd03271 ABC_UvrA_II The excisi 98.1 1.7E-05 3.8E-10 67.5 9.5 26 57-82 17-42 (261)
480 PRK09099 type III secretion sy 98.1 1.2E-05 2.6E-10 73.1 8.9 60 38-102 142-201 (441)
481 COG4170 SapD ABC-type antimicr 98.1 1.7E-06 3.6E-11 69.9 2.9 80 150-240 175-256 (330)
482 PF00308 Bac_DnaA: Bacterial d 98.1 6.7E-06 1.4E-10 68.4 6.4 106 62-205 35-140 (219)
483 PTZ00361 26 proteosome regulat 98.1 2.2E-05 4.7E-10 71.7 10.1 122 57-209 213-336 (438)
484 cd03275 ABC_SMC1_euk Eukaryoti 98.1 6.5E-05 1.4E-09 63.7 12.5 61 151-238 177-237 (247)
485 cd03115 SRP The signal recogni 98.1 7.3E-05 1.6E-09 59.7 12.2 87 63-162 2-93 (173)
486 TIGR01271 CFTR_protein cystic 98.1 1.9E-06 4E-11 89.9 3.6 41 56-99 447-487 (1490)
487 PRK07594 type III secretion sy 98.1 1.3E-05 2.7E-10 72.8 8.4 59 39-102 135-193 (433)
488 COG4178 ABC-type uncharacteriz 98.1 2.3E-05 5E-10 73.2 10.3 31 56-86 414-444 (604)
489 PRK09183 transposase/IS protei 98.1 1.7E-05 3.6E-10 67.7 8.7 41 58-100 99-139 (259)
490 PF05729 NACHT: NACHT domain 98.1 7.4E-05 1.6E-09 58.7 11.9 26 62-87 1-26 (166)
491 KOG0727|consensus 98.1 2.1E-05 4.5E-10 65.4 8.6 123 57-210 185-309 (408)
492 TIGR00064 ftsY signal recognit 98.1 4.8E-05 1E-09 65.3 11.4 142 6-163 13-166 (272)
493 cd03284 ABC_MutS1 MutS1 homolo 98.1 2.6E-05 5.7E-10 64.7 9.4 25 62-86 31-55 (216)
494 PRK11819 putative ABC transpor 98.1 2.8E-06 6E-11 80.5 4.0 39 56-97 345-383 (556)
495 KOG0736|consensus 98.1 2.2E-05 4.7E-10 74.3 9.6 121 53-204 697-818 (953)
496 PRK12723 flagellar biosynthesi 98.1 3.3E-05 7.1E-10 69.4 10.5 92 60-163 173-266 (388)
497 KOG0059|consensus 98.1 6.8E-06 1.5E-10 81.6 6.6 45 55-102 585-629 (885)
498 PRK08181 transposase; Validate 98.1 2.4E-05 5.2E-10 66.9 9.1 41 58-100 103-143 (269)
499 PRK06793 fliI flagellum-specif 98.1 2.6E-05 5.7E-10 70.7 9.7 115 40-165 137-260 (432)
500 smart00534 MUTSac ATPase domai 98.1 1.2E-05 2.6E-10 65.1 6.8 24 63-86 1-24 (185)
No 1
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=4.4e-36 Score=260.42 Aligned_cols=233 Identities=26% Similarity=0.372 Sum_probs=193.0
Q ss_pred hhhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 4 TDQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 4 ~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
.+.++..|+|+.+++|+++.+.+.. +..+.+ ..+....+++||++.||++|+||+++|.+++|+|+||+|||+|+
T Consensus 34 ~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 34 RALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhhccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 3667899999999999999999883 333333 34556788999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCe
Q psy2198 79 LQMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKV 152 (279)
Q Consensus 79 ~~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~ 152 (279)
++++....+|.. .+.++|+|+|+.|+.+|+.++... .++..+ +.+++.+.++.+.++..+.+..+... ...++
T Consensus 114 lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~-~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~ 192 (313)
T TIGR02238 114 HTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER-FGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPF 192 (313)
T ss_pred HHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH-cCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCC
Confidence 999988766532 345999999999999999998764 344433 67889999999999888777665432 45689
Q ss_pred eEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-----CCCccCccccchhhhh
Q psy2198 153 GMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAH 226 (279)
Q Consensus 153 ~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~ 226 (279)
++|||||++++++.++.+. +..++++.+.+++..|.+++++++++|+++||++.+.+. .+..+|+||..|+|.+
T Consensus 193 ~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~ 272 (313)
T TIGR02238 193 RLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHAS 272 (313)
T ss_pred CEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCCccCcchhhhhhhe
Confidence 9999999999988766543 234466668899999999999999999999999998754 3578899999999999
Q ss_pred hhheeeecccc
Q psy2198 227 DMRDLAHYLHE 237 (279)
Q Consensus 227 ~~rl~l~k~~~ 237 (279)
++|++++|.++
T Consensus 273 ~~Rl~l~k~~~ 283 (313)
T TIGR02238 273 TTRILLRKGRG 283 (313)
T ss_pred eEEEEEEecCC
Confidence 99999998765
No 2
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=1.2e-35 Score=259.19 Aligned_cols=233 Identities=24% Similarity=0.342 Sum_probs=191.8
Q ss_pred hhhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 4 TDQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 4 ~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
-+.++..|+|+.+++|+.+.+.+.- +..+.+ ..+....+++||++.||++|+||+++|.+++|+|+||||||+|+
T Consensus 64 ~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 64 KNLTGIKGLSEAKVDKICEAAEKLLNQGFITGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcccCCcHHHHHhhhccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 3567899999999999999988883 333333 33456788999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCC----CeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCe
Q psy2198 79 LQMCLSLQVSQPH----KGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKV 152 (279)
Q Consensus 79 ~~l~~~~~~~~~~----~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~ 152 (279)
++++...++|... +.++|||+|..|+++|+.++... .++..+ +++++.+.++.+.+++...+..+... ...++
T Consensus 144 lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~-~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~ 222 (344)
T PLN03187 144 HTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER-FGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPF 222 (344)
T ss_pred HHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH-cCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999888765433 34999999999999999998764 344433 67889999999999887776654332 44679
Q ss_pred eEEEEeCcchhhccccccch-hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC----CCCccCccccchhhhhh
Q psy2198 153 GMIVIDSIAGIFRNTYAEDK-YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH----SDKNIPALGLTYERAHD 227 (279)
Q Consensus 153 ~lvvID~l~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~----~~~~~~~~g~~~~~~~~ 227 (279)
++|||||++.++..++.++. ..++++.+.++++.|+++++++|++||++||++.+.+. .+..+|+||..|.|.++
T Consensus 223 ~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~~pagG~~~~h~~~ 302 (344)
T PLN03187 223 RLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAAT 302 (344)
T ss_pred CEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCCCCCCCchhhheeee
Confidence 99999999999987765542 34566778899999999999999999999999987754 34568999999999999
Q ss_pred hheeeecccc
Q psy2198 228 MRDLAHYLHE 237 (279)
Q Consensus 228 ~rl~l~k~~~ 237 (279)
+|++++|.++
T Consensus 303 ~Rl~l~k~~~ 312 (344)
T PLN03187 303 IRLMLRKGKG 312 (344)
T ss_pred EEEEEEcCCC
Confidence 9999998764
No 3
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=253.86 Aligned_cols=234 Identities=28% Similarity=0.400 Sum_probs=191.9
Q ss_pred hhhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 4 TDQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 4 ~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
-+.++.+|+|+.+++++.+.+++.. +..+.+ ..+....+++||++.||.+|+||+++|++++|+|+||+|||+|+
T Consensus 56 ~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 56 KDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHHHHhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 3567899999999999999999883 333332 33456788999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCe
Q psy2198 79 LQMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKV 152 (279)
Q Consensus 79 ~~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~ 152 (279)
++++....+|.. .+.++|+++|..++.+|+.++.+. .++..+ +.+++.+.++.+.+++.+.+...... ...++
T Consensus 136 ~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~-~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~ 214 (337)
T PTZ00035 136 HTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAER-FGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERF 214 (337)
T ss_pred HHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHH-hCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCc
Confidence 999988765432 334999999999999999988664 334333 67889999999998888877654432 45689
Q ss_pred eEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-----CCCccCccccchhhhh
Q psy2198 153 GMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAH 226 (279)
Q Consensus 153 ~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~ 226 (279)
++|||||+++++..++.++ +...|++.+.++++.|++++++++++||++||++...+. +...+|++|.+|.|.+
T Consensus 215 ~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~ 294 (337)
T PTZ00035 215 ALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHAS 294 (337)
T ss_pred cEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhhe
Confidence 9999999999988766543 234466678899999999999999999999999988653 3567899999999999
Q ss_pred hhheeeeccccc
Q psy2198 227 DMRDLAHYLHEI 238 (279)
Q Consensus 227 ~~rl~l~k~~~~ 238 (279)
++|++++|.++.
T Consensus 295 ~~Rl~l~k~~~~ 306 (337)
T PTZ00035 295 TTRLSLRKGRGE 306 (337)
T ss_pred eEEEEEEecCCC
Confidence 999999987653
No 4
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=8.7e-35 Score=246.44 Aligned_cols=198 Identities=36% Similarity=0.550 Sum_probs=165.2
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC----eEEEEECCCCCCHHHHHHHHHh
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK----GVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~----gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
....|+||++.||.+|+||++.|.+++|+|+||+|||.||++++...++|...+ +++|||+|..|+.+|+.++.+.
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~ 95 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAER 95 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhc
Confidence 457799999999999999999999999999999999999999999988775433 4999999999999999999875
Q ss_pred CCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCeeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHH
Q psy2198 115 SPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKVGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELS 191 (279)
Q Consensus 115 ~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la 191 (279)
. ++..+ .++++.+.++.+.+++...+...... ...++++|||||++.+|+.++.+. +..+|...+.++++.|+++|
T Consensus 96 ~-~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA 174 (256)
T PF08423_consen 96 F-GLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLA 174 (256)
T ss_dssp T-TS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHH
Confidence 3 34333 78999999999999998888765443 456899999999999998777643 34568889999999999999
Q ss_pred HHcCcEEEEecccccccCC-----CCCccCccccchhhhhhhheeeecccc
Q psy2198 192 IKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 192 ~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
++++++||++||++...+. .+..+|++|..|.|.+++|++++|.++
T Consensus 175 ~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~ 225 (256)
T PF08423_consen 175 RKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRG 225 (256)
T ss_dssp HHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECST
T ss_pred HhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCCC
Confidence 9999999999999988775 357899999999999999999998664
No 5
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=5.7e-34 Score=249.10 Aligned_cols=233 Identities=24% Similarity=0.366 Sum_probs=189.0
Q ss_pred hhhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 4 TDQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 4 ~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
.+.++..|+++.+++++.+.+.+.. +..+++ ..+....+++||++.||.+|+||+++|++++|+|+||+|||+|+
T Consensus 61 ~~L~~i~~is~~~~~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~ 140 (342)
T PLN03186 61 KDLLQIKGISEAKVEKILEAASKLVPLGFTTASQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLC 140 (342)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcccccchHHHHhhcccCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHH
Confidence 3567889999999999999887773 222322 33456788999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCC----CeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCe
Q psy2198 79 LQMCLSLQVSQPH----KGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKV 152 (279)
Q Consensus 79 ~~l~~~~~~~~~~----~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~ 152 (279)
++++....+|... +.++|||+|+.|+++|+.++.... ++..+ +.+++.+.++.+.+++...+...... ...++
T Consensus 141 ~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~-~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~ 219 (342)
T PLN03186 141 HTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF-GLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRF 219 (342)
T ss_pred HHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc-CCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCC
Confidence 9999887655332 349999999999999999997653 44333 67889999999998888777655332 55689
Q ss_pred eEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-----CCCccCccccchhhhh
Q psy2198 153 GMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAH 226 (279)
Q Consensus 153 ~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~ 226 (279)
++|||||++++++.++.++ +...++..+.++++.|+++|++++++||++||++...++ ++..+|+||..|+|.+
T Consensus 220 ~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~ 299 (342)
T PLN03186 220 ALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHAS 299 (342)
T ss_pred CEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhc
Confidence 9999999999988765543 233455667899999999999999999999999877654 3446999999999999
Q ss_pred hhheeeecccc
Q psy2198 227 DMRDLAHYLHE 237 (279)
Q Consensus 227 ~~rl~l~k~~~ 237 (279)
++|++++|.++
T Consensus 300 ~tRl~L~k~~~ 310 (342)
T PLN03186 300 TTRLALRKGRG 310 (342)
T ss_pred cEEEEEEecCC
Confidence 99999998654
No 6
>KOG1434|consensus
Probab=100.00 E-value=1.9e-35 Score=239.43 Aligned_cols=232 Identities=27% Similarity=0.390 Sum_probs=205.5
Q ss_pred hHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHH
Q psy2198 6 QMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQ 80 (279)
Q Consensus 6 ~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~ 80 (279)
.|...||++..++|+.+++.|.. +..+.+ ..+.....|.||+..||.+||||++.-.+++|+|.+|+|||.+..+
T Consensus 55 l~~lkgise~kv~klkeaa~k~~~~~f~tA~e~le~r~~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlsht 134 (335)
T KOG1434|consen 55 LCKLKGISEVKVDKLKEAANKSISHGFCTALELLEQRKTVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHT 134 (335)
T ss_pred HHHHhhHHHHhhhhHHHhhCCccCcCcchHHHHHhhhhccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeE
Confidence 57889999999999999999883 333333 4566788999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCe----EEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc--CCCCee
Q psy2198 81 MCLSLQVSQPHKG----VLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF--IENKVG 153 (279)
Q Consensus 81 l~~~~~~~~~~~g----vlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~--~~~~~~ 153 (279)
+|....+|...|| ++|||+|..|.++|+.++.+ .+...++ .++|+.|.++.+.++..+.+..+-.+ ++..++
T Consensus 135 LcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe-~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~r 213 (335)
T KOG1434|consen 135 LCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAE-RFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYR 213 (335)
T ss_pred EEEEeecchhhCCCCceEEEEecCCccchHHHHHHHH-HhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEE
Confidence 9999998887665 99999999999999999975 4555555 89999999999999998888776654 557899
Q ss_pred EEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-----CCCccCccccchhhhhh
Q psy2198 154 MIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAHD 227 (279)
Q Consensus 154 lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~~ 227 (279)
+||+|++.+.|+.+++++ +.++|++.+.+++..|.+++++++++|+++||++.+++. ....+|++|..|+|++.
T Consensus 214 lvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAst 293 (335)
T KOG1434|consen 214 LVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHAST 293 (335)
T ss_pred EEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhh
Confidence 999999999999999875 457899999999999999999999999999999999876 56699999999999999
Q ss_pred hheeeeccccc
Q psy2198 228 MRDLAHYLHEI 238 (279)
Q Consensus 228 ~rl~l~k~~~~ 238 (279)
+|++++|.++.
T Consensus 294 tRlilrkgrg~ 304 (335)
T KOG1434|consen 294 TRLILRKGRGD 304 (335)
T ss_pred eeEEEEcCCcc
Confidence 99999999854
No 7
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=100.00 E-value=4.7e-33 Score=242.22 Aligned_cols=233 Identities=24% Similarity=0.356 Sum_probs=189.2
Q ss_pred hhhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 4 TDQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 4 ~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
.+.++..|+++.+++++.....+.. +..+++ .......+++||++.||.+|+||+++|++++|+|+||+|||+|+
T Consensus 34 ~~L~~i~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~ 113 (316)
T TIGR02239 34 KQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRQEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLC 113 (316)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcccccccHHHHHhcccccceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHH
Confidence 4667889999999999999877773 233333 34456788999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCC----eEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCe
Q psy2198 79 LQMCLSLQVSQPHK----GVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKV 152 (279)
Q Consensus 79 ~~l~~~~~~~~~~~----gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~ 152 (279)
++++..+.+|...| .++|+++|+.++.+|+.++.+.. ++..+ +.+++.+.++.+.+++...+...... ...++
T Consensus 114 ~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~-~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (316)
T TIGR02239 114 HTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERY-GLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRF 192 (316)
T ss_pred HHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHc-CCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCc
Confidence 99998776554343 48999999999999988886643 33333 67888999999988887777665442 45689
Q ss_pred eEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC------CCCccCccccchhhh
Q psy2198 153 GMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH------SDKNIPALGLTYERA 225 (279)
Q Consensus 153 ~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~------~~~~~~~~g~~~~~~ 225 (279)
++|||||++++++.++.+. +...++..+.++++.|++++++++++||++||++...++ ++..+|++|..|+|.
T Consensus 193 ~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~ 272 (316)
T TIGR02239 193 ALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHA 272 (316)
T ss_pred cEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhh
Confidence 9999999999987766543 223455667899999999999999999999999977654 357799999999999
Q ss_pred hhhheeeecccc
Q psy2198 226 HDMRDLAHYLHE 237 (279)
Q Consensus 226 ~~~rl~l~k~~~ 237 (279)
+++|++++|.++
T Consensus 273 ~~~ri~l~k~~~ 284 (316)
T TIGR02239 273 STTRLSLRKGRG 284 (316)
T ss_pred ccEEEEEEecCC
Confidence 999999998765
No 8
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.97 E-value=1.8e-30 Score=227.58 Aligned_cols=234 Identities=24% Similarity=0.356 Sum_probs=181.5
Q ss_pred chhhHhhcCccHHHHHHHHHHHhhcc----cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHH
Q psy2198 3 HTDQMLKLGFQEWEVNKVKDLKKKKA----FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQ 76 (279)
Q Consensus 3 ~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTt 76 (279)
..+..+.+|+++..++++.+.+.... ...+.+ ..+.+...++||++.||.+|+||+++|.+++|+|+||+|||+
T Consensus 38 ~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~ 117 (317)
T PRK04301 38 PKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQ 117 (317)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccCCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhH
Confidence 34556788999999999988876521 112111 224567789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCC----CeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CC-
Q psy2198 77 LCLQMCLSLQVSQPH----KGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IE- 149 (279)
Q Consensus 77 l~~~l~~~~~~~~~~----~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~- 149 (279)
|+.+++..++.+... +.++|+++|+.++.+|+.++.... ++..+ ..+++.+..+.+.++....+...... ..
T Consensus 118 l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~-g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~ 196 (317)
T PRK04301 118 ICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEAL-GLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEG 196 (317)
T ss_pred HHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHc-CCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhcc
Confidence 999999988754332 349999999999999999887643 33333 56788888887766655444433322 33
Q ss_pred CCeeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhh
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAH 226 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~ 226 (279)
.++++|||||+++++..++.+. +...+.+.+.+++..|+++++++++++|++||++...+. +....|++|..|.|.+
T Consensus 197 ~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~~ 276 (317)
T PRK04301 197 ENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTA 276 (317)
T ss_pred CceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccCccccCCcchHhHhhe
Confidence 6899999999999987765543 223455667788899999999999999999999877643 5677899999999999
Q ss_pred hhheeeecccc
Q psy2198 227 DMRDLAHYLHE 237 (279)
Q Consensus 227 ~~rl~l~k~~~ 237 (279)
++|++++|.++
T Consensus 277 ~~rl~l~k~~~ 287 (317)
T PRK04301 277 TFRIYLRKSKG 287 (317)
T ss_pred eEEEEEEecCC
Confidence 99999999755
No 9
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.97 E-value=6e-30 Score=214.30 Aligned_cols=196 Identities=32% Similarity=0.445 Sum_probs=161.7
Q ss_pred eccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 43 i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
++||++.||++|+||+++|++++|+|+||+|||+|+++++...+.+.. .++++|++++..++..++.++.......
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 589999999999999999999999999999999999999998763210 1569999999998888888886653322
Q ss_pred CccccCcEEEEecCCHHHHHHHHHhhhcc-CCCCeeEEEEeCcchhhccccccch-hhHHHHHHHHHHHHHHHHHHHcCc
Q psy2198 119 KPKCSDKIFITHCYEFIDLKRTLESQSGF-IENKVGMIVIDSIAGIFRNTYAEDK-YVQRAHDMRDLAHYLHELSIKHRI 196 (279)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~la~~~~~ 196 (279)
...+.+++.+..+.+.+++...+...... ...++++||||+++.+++..+.+.+ ...+.+.+.++++.|+++++++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~ 160 (226)
T cd01393 81 PEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNV 160 (226)
T ss_pred hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 22367889999999999888888876542 4678999999999998876544331 234667788999999999999999
Q ss_pred EEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccc
Q psy2198 197 VVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 197 ~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
+||+++|.+...+. +....|++|..|++.++.|+++++..+.
T Consensus 161 ~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~~~~ri~l~~~~~~ 204 (226)
T cd01393 161 AVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRGI 204 (226)
T ss_pred EEEEEEEEeeecccccCCCccccCchhhhCcccEEEEEEecCCc
Confidence 99999999987764 3667899999999999999999998864
No 10
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.97 E-value=6e-30 Score=215.55 Aligned_cols=195 Identities=30% Similarity=0.483 Sum_probs=158.8
Q ss_pred eccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 43 i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
++||++.||.+|+||+++|++++|+|+||+|||+|+++++.....+.+ .++++|+++|+.++.+++.++.......
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 589999999999999999999999999999999999999988764332 2569999999988888988887643322
Q ss_pred CccccCcEEEEecCCHHHHHHHHHhhhcc-CCC-CeeEEEEeCcchhhccccccch-hhHHHHHHHHHHHHHHHHHHHcC
Q psy2198 119 KPKCSDKIFITHCYEFIDLKRTLESQSGF-IEN-KVGMIVIDSIAGIFRNTYAEDK-YVQRAHDMRDLAHYLHELSIKHR 195 (279)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~-~~~lvvID~l~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~la~~~~ 195 (279)
...+.+++.+..+.+.+++...+..+.+. ... ++++||||+++.+++..+.+.. ...+.+.+.++++.|++++++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~ 160 (235)
T cd01123 81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFN 160 (235)
T ss_pred hHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22367889999988888877766655443 344 8999999999998865444332 23466788999999999999999
Q ss_pred cEEEEecccccccCC-----CCCccCccccchhhhhhhheeeecccc
Q psy2198 196 IVVICTNQVTSAMTH-----SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 196 ~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
++||++||.+...+. +...+|++|..|.+.++.|+++.+..+
T Consensus 161 ~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~ 207 (235)
T cd01123 161 VAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRG 207 (235)
T ss_pred CEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCC
Confidence 999999999876653 356789999999999999999998763
No 11
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.97 E-value=2.7e-29 Score=219.82 Aligned_cols=232 Identities=26% Similarity=0.371 Sum_probs=177.8
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcc----cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKA----FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
+..+.+|+++...+++.+.+.+.. +..+.+ ..+.....++||++.+|.+|+||++.|.+++|+|+||+|||+|+
T Consensus 33 ~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 33 ELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKTIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 344678999888888888876431 111111 22466778999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CC-C-
Q psy2198 79 LQMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IE-N- 150 (279)
Q Consensus 79 ~~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~-~- 150 (279)
.+++..+++|.. .+.++||++|+.++.+|+.++... .++..+ ..+++.+..+.+.++....+.++... .. .
T Consensus 113 ~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~-~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~ 191 (310)
T TIGR02236 113 HQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEA-RGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNN 191 (310)
T ss_pred HHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHH-cCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCC
Confidence 999998875432 235999999999999999988764 233332 56778888887765544333333222 22 2
Q ss_pred CeeEEEEeCcchhhccccccch-hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhh
Q psy2198 151 KVGMIVIDSIAGIFRNTYAEDK-YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHD 227 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~ 227 (279)
.+++|||||++.++..++.+.. ..++++.+.+++..|.++++++++++|++||++...+. +....|++|..|+|.++
T Consensus 192 ~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~~~G~~~~h~~~ 271 (310)
T TIGR02236 192 PVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTRPIGGHILGHAAT 271 (310)
T ss_pred CceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccCccccCCcchhhhhhee
Confidence 5899999999998877665432 34456667888899999999999999999999987653 46679999999999999
Q ss_pred hheeeecccc
Q psy2198 228 MRDLAHYLHE 237 (279)
Q Consensus 228 ~rl~l~k~~~ 237 (279)
+|++++|.++
T Consensus 272 ~rl~l~~~~~ 281 (310)
T TIGR02236 272 FRVYLRKGKG 281 (310)
T ss_pred EEEEEEecCC
Confidence 9999998543
No 12
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.8e-28 Score=206.22 Aligned_cols=219 Identities=26% Similarity=0.263 Sum_probs=184.6
Q ss_pred cCccHHHHHHHHHHHhhcccccCC------CCCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHH
Q psy2198 10 LGFQEWEVNKVKDLKKKKAFQVGK------NPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 10 ~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
.+.++++..+......+..+..+. .........++||+..||.+|+||++.|.+++|+||+|||||++++++++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~ 82 (279)
T COG0468 3 QGIDEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVA 82 (279)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHH
Confidence 456677777777766666444322 24455689999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 84 SLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 84 ~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
.+.. +.+.++|+|+|..++++|+.++.... .+++.+..+.+.++..+.+..........++++||||++++
T Consensus 83 ~aq~--~g~~a~fIDtE~~l~p~r~~~l~~~~-------~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 83 NAQK--PGGKAAFIDTEHALDPERAKQLGVDL-------LDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred Hhhc--CCCeEEEEeCCCCCCHHHHHHHHHhh-------hcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 9972 33359999999999999999997752 67999999999999998888887653337999999999999
Q ss_pred hccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecccc
Q psy2198 164 FRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
++..+.++ ....+++.+.+.++.|..++++++++++++||+....+. ++...+.||.++.+.+..|+.++|...
T Consensus 154 ~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~ 230 (279)
T COG0468 154 VRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIES 230 (279)
T ss_pred chhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccCCcccCCCchHHHhhhheEEEEeeccc
Confidence 98776653 345678888999999999999999999999999999887 468999999999999999999999843
No 13
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.95 E-value=3.7e-27 Score=197.29 Aligned_cols=187 Identities=27% Similarity=0.388 Sum_probs=147.8
Q ss_pred ceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCc
Q psy2198 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKP 120 (279)
Q Consensus 41 ~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~ 120 (279)
++++||+++||++|+||+++|++++|+|+||+|||+|+.+++...+ .....++|+++| .++.+++.++.... . .
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~~~~~~~~--~-~ 76 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERFKQIAGED--F-E 76 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHHHHHHhhC--h-H
Confidence 4699999999999999999999999999999999999999999886 234559999999 67888888876541 1 1
Q ss_pred cccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccccc-chhhHHHHHHHHHHHHHHHHHHHcCcEEE
Q psy2198 121 KCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAE-DKYVQRAHDMRDLAHYLHELSIKHRIVVI 199 (279)
Q Consensus 121 ~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~la~~~~~~vi 199 (279)
...+++.+..+.+..++.+.+.........+++++|||++++++...+.+ .+...+.+.+.++++.|++++++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi 156 (225)
T PRK09361 77 ELLSNIIIFEPSSFEEQSEAIRKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVV 156 (225)
T ss_pred hHhhCeEEEeCCCHHHHHHHHHHHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 14567888888888777666655433222688999999999987654322 12223445667778889999999999999
Q ss_pred EecccccccCCCCCccCccccchhhhhhhheeeec
Q psy2198 200 CTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHY 234 (279)
Q Consensus 200 ~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k 234 (279)
+++|.....+. ....+.+|..|++.++.++.+++
T Consensus 157 ~tnq~~~~~~~-~~~~~~gg~~~~~~~d~ii~l~~ 190 (225)
T PRK09361 157 ITNQVYSDIDS-DGLRPLGGHTLEHWSKTILRLEK 190 (225)
T ss_pred EEccceecCCC-CcccCCCcchhhhhccEEEEEEE
Confidence 99999877654 35667889999999999999998
No 14
>KOG1564|consensus
Probab=99.95 E-value=5.5e-27 Score=192.90 Aligned_cols=197 Identities=37% Similarity=0.614 Sum_probs=169.6
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe----EEEEECCCCCCHHHHHHHHHhC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYICTESVFPTARLAQLCELS 115 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g----vlyi~~e~~~~~~~~~~~~~~~ 115 (279)
.+.++||.+.||..|+||++.+.+++|+|++|+|||.|+++++....+|.+.|| ++||.+|..++.+|+.++....
T Consensus 81 ~~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~ 160 (351)
T KOG1564|consen 81 RSKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTL 160 (351)
T ss_pred chhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhc
Confidence 356999999999999999999999999999999999999999999999888776 9999999999999998887766
Q ss_pred CCC-Ccc----ccCc----EEEEecCCHHHHHHHHHhhhcc--CCCCeeEEEEeCcchhhcccccc--chhhHHHHHHHH
Q psy2198 116 PLA-KPK----CSDK----IFITHCYEFIDLKRTLESQSGF--IENKVGMIVIDSIAGIFRNTYAE--DKYVQRAHDMRD 182 (279)
Q Consensus 116 ~~~-~~~----~~~~----i~~~~~~~~~~l~~~i~~~~~~--~~~~~~lvvID~l~~~~~~~~~~--~~~~~~~~~~~~ 182 (279)
... .++ ...| +++..+.+.+.+...+...+++ ...++++|||||+++.|+.+++. ++...|.+.+.+
T Consensus 161 ~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~r 240 (351)
T KOG1564|consen 161 PQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFR 240 (351)
T ss_pred ccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChhhhhhHHHHHHH
Confidence 554 222 3344 8999999999999999888886 77889999999999999877663 233457889999
Q ss_pred HHHHHHHHHHHcCcEEEEecccccccCC--C---------------CCccCccccchhhhhhhheeeeccc
Q psy2198 183 LAHYLHELSIKHRIVVICTNQVTSAMTH--S---------------DKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 183 l~~~L~~la~~~~~~vi~v~h~~~~~~~--~---------------~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
+...|+.+|.+++++|+++||++...+. + .-..|++|..|++...+|+++.|..
T Consensus 241 la~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~ 311 (351)
T KOG1564|consen 241 LAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRST 311 (351)
T ss_pred HHHHHHHHHHhcCccEEEeeccccccccccccCCccccchhhccccccccccccceeccccceeeeeeecc
Confidence 9999999999999999999999987432 1 1167999999999999999999933
No 15
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.95 E-value=5.4e-27 Score=195.37 Aligned_cols=187 Identities=26% Similarity=0.428 Sum_probs=144.9
Q ss_pred eccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccc
Q psy2198 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKC 122 (279)
Q Consensus 43 i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~ 122 (279)
++||+++||.+|+||+++|++++|+|+||+|||+|+.+++...+ ...+.++|++++..++ +++.++..... ...
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~-~~~~~~~~~~~---~~~ 74 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS-ERFRQIAGDRP---ERA 74 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH-HHHHHHHhHCh---Hhh
Confidence 58999999999999999999999999999999999999999885 2344599999998765 66666654421 114
Q ss_pred cCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEe
Q psy2198 123 SDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICT 201 (279)
Q Consensus 123 ~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v 201 (279)
..++.+..+.+..++...+.........++++||||+++.++....... ....+...+.++++.|+.+|+++++++|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 154 (218)
T cd01394 75 ASSIIVFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVIT 154 (218)
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 5677777777776666545444332234589999999999875443322 112344567778888999999999999999
Q ss_pred cccccccCCCCCccCccccchhhhhhhheeeeccc
Q psy2198 202 NQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 202 ~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
+|.+...+. ....|.+|..|++.++.++.+++..
T Consensus 155 ~q~~~~~~~-~~~~p~~g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 155 NQVYSDVGS-GSVRPLGGHTLEHWSKVILRLEKLR 188 (218)
T ss_pred cCCEEcCCC-CcccccCCcchhcceeEEEEEEEcC
Confidence 999877663 5677889999999999999999876
No 16
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.95 E-value=2.2e-26 Score=198.95 Aligned_cols=217 Identities=21% Similarity=0.169 Sum_probs=164.2
Q ss_pred cccCCCCCCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHH
Q psy2198 29 FQVGKNPIDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTAR 107 (279)
Q Consensus 29 ~~~~~~~~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~ 107 (279)
.....+........++||++.||.+|+ ||+|+|.+++|+||||+|||||+++++...+ ...+.++|+|+|+.++..+
T Consensus 22 ~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 22 IMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred eEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHHH
Confidence 333333455678899999999999999 9999999999999999999999999999886 2334499999999877654
Q ss_pred HHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchh----hHHHHHHHH
Q psy2198 108 LAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKY----VQRAHDMRD 182 (279)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~----~~~~~~~~~ 182 (279)
..++ ++ ..+++.+..+.+.++....+..++ ....+++|||||++++++ .++.+... ..+.+.+.+
T Consensus 100 a~~l-----Gv---d~~~l~v~~p~~~eq~l~i~~~li--~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~ 169 (325)
T cd00983 100 AKKL-----GV---DLDNLLISQPDTGEQALEIADSLV--RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 169 (325)
T ss_pred HHHc-----CC---CHHHheecCCCCHHHHHHHHHHHH--hccCCCEEEEcchHhhcccccccccccccchHHHHHHHHH
Confidence 4332 33 245777888888888888777665 457899999999999885 34433221 113345567
Q ss_pred HHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccccc------eeeEEEEecccccc
Q psy2198 183 LAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEISI------KHWIVVICTNQVTS 254 (279)
Q Consensus 183 l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~~~------~~~~~v~~~~~~~~ 254 (279)
.++.|..+++++++++|++||.+..... +....+.+|.++.+.+..|+.++|...... ....+.++.|++..
T Consensus 170 ~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~~~~~v~Knk~~~ 249 (325)
T cd00983 170 ALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRTKVKVVKNKVAP 249 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHhhhcceEEEEEeecccccCCcccccEEEEEEEecccCC
Confidence 7888888889999999999999988764 467788999999999999999998764331 12245556666664
Q ss_pred ccC
Q psy2198 255 AMT 257 (279)
Q Consensus 255 ~~~ 257 (279)
.-.
T Consensus 250 p~~ 252 (325)
T cd00983 250 PFK 252 (325)
T ss_pred CCC
Confidence 433
No 17
>PRK09354 recA recombinase A; Provisional
Probab=99.95 E-value=8.2e-26 Score=196.75 Aligned_cols=210 Identities=21% Similarity=0.205 Sum_probs=159.8
Q ss_pred CCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 36 IDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 36 ~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
.......++||++.||.+|+ ||+|+|.+++|+||+|||||||+++++...+ ...+.++||++|+.++..+..++
T Consensus 34 ~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~~a~~l--- 108 (349)
T PRK09354 34 AAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPVYAKKL--- 108 (349)
T ss_pred cccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHHHHHHc---
Confidence 34478899999999999999 9999999999999999999999999999886 23444999999998776443322
Q ss_pred CCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchh----hHHHHHHHHHHHHHHH
Q psy2198 115 SPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKY----VQRAHDMRDLAHYLHE 189 (279)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~----~~~~~~~~~l~~~L~~ 189 (279)
+++ .+++.+..+.+.++....+..++ ....+++|||||++++++ .++.+... ....+.+.+.++.|..
T Consensus 109 --Gvd---ld~lli~qp~~~Eq~l~i~~~li--~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~ 181 (349)
T PRK09354 109 --GVD---IDNLLVSQPDTGEQALEIADTLV--RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 181 (349)
T ss_pred --CCC---HHHeEEecCCCHHHHHHHHHHHh--hcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHH
Confidence 332 45777888888888887777665 557899999999999885 44443211 1233455667788888
Q ss_pred HHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccccc------eeeEEEEeccccccccC
Q psy2198 190 LSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEISI------KHWIVVICTNQVTSAMT 257 (279)
Q Consensus 190 la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~~~------~~~~~v~~~~~~~~~~~ 257 (279)
+++++++++|++||.+...+. +....+.+|..+.+.+..|+.++|...... ......++.|++...-.
T Consensus 182 ~l~k~~itvI~tNQvr~~ig~~~g~pe~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~~~r~~vvKnk~~~p~~ 257 (349)
T PRK09354 182 NISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFK 257 (349)
T ss_pred HHHHcCcEEEEEEeeeeccccccCCCCcCCCchhhHhhheeeeEEecccccccCCceecceEEEEEEecccCCCCC
Confidence 889999999999999987653 355678999999999999999998654221 11255566666665433
No 18
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=199.08 Aligned_cols=184 Identities=23% Similarity=0.279 Sum_probs=155.1
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCC
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSP 116 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~ 116 (279)
.....+++||+.+||++|+||+-+|++++|.|.||.|||||+++++..++ ..+.+||+++|++...-+++ ++..
T Consensus 69 ~~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~~vLYVsGEES~~QiklR---A~RL 142 (456)
T COG1066 69 LEEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRGKVLYVSGEESLQQIKLR---ADRL 142 (456)
T ss_pred eeecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcCcEEEEeCCcCHHHHHHH---HHHh
Confidence 45677999999999999999999999999999999999999999999987 45579999999983221111 1112
Q ss_pred CCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCc
Q psy2198 117 LAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRI 196 (279)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~ 196 (279)
+. ..+++++..+.+.+++.+.+.+. +|+++||||++.++..+.++.++ ...|+++....|.++||+.|+
T Consensus 143 ~~---~~~~l~l~aEt~~e~I~~~l~~~------~p~lvVIDSIQT~~s~~~~SapG--sVsQVRe~t~~L~~~AK~~~i 211 (456)
T COG1066 143 GL---PTNNLYLLAETNLEDIIAELEQE------KPDLVVIDSIQTLYSEEITSAPG--SVSQVREVAAELMRLAKTKNI 211 (456)
T ss_pred CC---CccceEEehhcCHHHHHHHHHhc------CCCEEEEeccceeecccccCCCC--cHHHHHHHHHHHHHHHHHcCC
Confidence 22 23789999999999999988774 78999999999999888777665 678999999999999999999
Q ss_pred EEEEecccccccCCCCCccCccccchhhhhhhheeeeccccccceee
Q psy2198 197 VVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEISIKHW 243 (279)
Q Consensus 197 ~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~~~~~~ 243 (279)
+++++.|++++.. .+|+..++|.+|+.++++.++....+..
T Consensus 212 ~~fiVGHVTKeG~------IAGPrvLEHmVDtVlyFEGd~~~~~RiL 252 (456)
T COG1066 212 AIFIVGHVTKEGA------IAGPRVLEHMVDTVLYFEGDRHSRYRIL 252 (456)
T ss_pred eEEEEEEEccccc------ccCchheeeeeeEEEEEeccCCCceeee
Confidence 9999999999886 4889999999999999998776654433
No 19
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.94 E-value=2.9e-25 Score=191.95 Aligned_cols=212 Identities=19% Similarity=0.185 Sum_probs=158.6
Q ss_pred CCCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHH
Q psy2198 35 PIDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE 113 (279)
Q Consensus 35 ~~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~ 113 (279)
.......++|||++.||.+|+ ||+++|.+++|+||||+|||||+++++...+ ...+.++|||+|+.+++....+
T Consensus 28 ~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~~a~~--- 102 (321)
T TIGR02012 28 KSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPVYARK--- 102 (321)
T ss_pred cccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHHHHHH---
Confidence 335567899999999999999 9999999999999999999999999998886 2334499999999876543222
Q ss_pred hCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchh----hHHHHHHHHHHHHHH
Q psy2198 114 LSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKY----VQRAHDMRDLAHYLH 188 (279)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~----~~~~~~~~~l~~~L~ 188 (279)
.++. .+++.+..+.+.++....+..++ ....+++|||||++++++ .++.+..+ ....+.+.+.++.|.
T Consensus 103 --lGvd---~~~l~v~~p~~~eq~l~~~~~li--~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~ 175 (321)
T TIGR02012 103 --LGVD---IDNLLVSQPDTGEQALEIAETLV--RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLT 175 (321)
T ss_pred --cCCC---HHHeEEecCCCHHHHHHHHHHHh--hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHH
Confidence 2332 45777888888888877776655 456899999999999875 33333211 123345567788888
Q ss_pred HHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccccc------eeeEEEEeccccccccCC
Q psy2198 189 ELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEISI------KHWIVVICTNQVTSAMTH 258 (279)
Q Consensus 189 ~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~~~------~~~~~v~~~~~~~~~~~~ 258 (279)
.+++++++++|++||.+..... ++...+.+|..+.+.+..|+.++|...... ....+-++.|++...-..
T Consensus 176 ~~l~~~~~tvi~tNQvr~~~g~~~~~~e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~~~~~v~Knk~~~p~~~ 253 (321)
T TIGR02012 176 GALSKSNTTAIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNRTKVKVVKNKVAPPFKE 253 (321)
T ss_pred HHHHhCCCEEEEEecceeccCcccCCCccCcCccHHHHHHhHhHhhhhhhccccCCceeccEEEEEEEECCCCCCCCc
Confidence 8999999999999999987653 456678999999999999999988654332 123445556666644443
No 20
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.93 E-value=4.1e-25 Score=182.88 Aligned_cols=179 Identities=23% Similarity=0.422 Sum_probs=141.5
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEE
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFIT 129 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 129 (279)
||.+|+||+++|++++|+|+||+|||+|+++++.... .....++|+++|. ++..++.++.... .....+++.+.
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~~~~~---~~~~~~~i~~~ 74 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQIAEDR---PERALSNFIVF 74 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHHHHhC---hHHHhcCEEEE
Confidence 7999999999999999999999999999999998875 2344599999997 7888888876643 11245788888
Q ss_pred ecCCHHHHHHHHHhhhcc-CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 130 HCYEFIDLKRTLESQSGF-IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 130 ~~~~~~~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.+.+..++...+....+. ...++++|||||++.+++....+... .+.+.+.+++..|+++++++++++|+++|.+...
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~-~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~ 153 (209)
T TIGR02237 75 EVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRI-SRNRELARQLTLLLSLARKKNLAVVITNQVYTDV 153 (209)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccH-HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEec
Confidence 888877775555554433 44589999999999987654333221 2445667778889999999999999999988766
Q ss_pred CCCCCccCccccchhhhhhhheeeeccc
Q psy2198 209 THSDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 209 ~~~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
+. ....|++|..|.+.++.++.+++.+
T Consensus 154 ~~-~~~~~~gg~~~~~~~d~vi~l~~~~ 180 (209)
T TIGR02237 154 NN-GTLRPLGGHLLEHWSKVILRLEKFR 180 (209)
T ss_pred CC-CCCcCCCcchhheeeeEEEEEEecC
Confidence 54 5667889999999999999999873
No 21
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.92 E-value=4.3e-24 Score=201.92 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=154.6
Q ss_pred cccCCCCCCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHH
Q psy2198 29 FQVGKNPIDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTAR 107 (279)
Q Consensus 29 ~~~~~~~~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~ 107 (279)
.....+..+.....++||++.||.+|+ ||+++|.+++|+|++|+|||+|+.+++...+ ...+.++|+++|+.++..+
T Consensus 27 ~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~~ 104 (790)
T PRK09519 27 VMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPDY 104 (790)
T ss_pred hcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHHH
Confidence 444444456678899999999999998 8999999999999999999999999988775 2334499999999877554
Q ss_pred HHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchh----hHHHHHHHH
Q psy2198 108 LAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKY----VQRAHDMRD 182 (279)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~----~~~~~~~~~ 182 (279)
..++ +++ .+++.+..+.+.+++...+...+ ....+++|||||+++++. .++.+... ..+.+.+.+
T Consensus 105 A~~l-----GvD---l~~llv~~~~~~E~~l~~i~~lv--~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q 174 (790)
T PRK09519 105 AKKL-----GVD---TDSLLVSQPDTGEQALEIADMLI--RSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQ 174 (790)
T ss_pred HHHc-----CCC---hhHeEEecCCCHHHHHHHHHHHh--hcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHH
Confidence 3332 443 34667888888888777777665 457899999999999984 55554321 123444567
Q ss_pred HHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecc
Q psy2198 183 LAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYL 235 (279)
Q Consensus 183 l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~ 235 (279)
.++.|.++++++|+++|++||.+...+. ++...+.||.++.+.+..|+.++|.
T Consensus 175 ~L~~L~~~l~~~nvtvi~TNQv~~~~g~~fg~p~~~~GG~~l~h~ss~Ri~lrk~ 229 (790)
T PRK09519 175 ALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRV 229 (790)
T ss_pred HHHHHHHHHHhCCCEEEEEecceecCCCcCCCCCcCCCCcccceeccEEEEeeec
Confidence 7888889999999999999999998764 5678899999999999999999984
No 22
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.92 E-value=7.8e-24 Score=182.50 Aligned_cols=194 Identities=22% Similarity=0.210 Sum_probs=145.6
Q ss_pred CCCCCCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHH
Q psy2198 32 GKNPIDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQ 110 (279)
Q Consensus 32 ~~~~~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~ 110 (279)
+..........+|||++.||.+|+ ||+|+|.+++|+||+++|||||++++++.+. ...+-++|||.|..+++..+.+
T Consensus 23 g~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~a~~ 100 (322)
T PF00154_consen 23 GDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEYAES 100 (322)
T ss_dssp TS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHHHHH
T ss_pred CCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhHHHh
Confidence 344446777899999999999999 9999999999999999999999999998875 2344499999999988777665
Q ss_pred HHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcc-cccc----chhhHHHHHHHHHHH
Q psy2198 111 LCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRN-TYAE----DKYVQRAHDMRDLAH 185 (279)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~-~~~~----~~~~~~~~~~~~l~~ 185 (279)
+ +. .++++.+.++.+.++....+..++ ....+++|||||+..+.+. ++.+ .....+.+.+.+.++
T Consensus 101 l-----Gv---dl~rllv~~P~~~E~al~~~e~li--rsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr 170 (322)
T PF00154_consen 101 L-----GV---DLDRLLVVQPDTGEQALWIAEQLI--RSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALR 170 (322)
T ss_dssp T-----T-----GGGEEEEE-SSHHHHHHHHHHHH--HTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHH
T ss_pred c-----Cc---cccceEEecCCcHHHHHHHHHHHh--hcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHH
Confidence 4 33 346888888888888888777776 4567899999999998643 2222 112346778899999
Q ss_pred HHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecccc
Q psy2198 186 YLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 186 ~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
.+..+..+.++++|++||.+...+. +.+....||..|.+.+..|+.++|...
T Consensus 171 ~lt~~l~~~~~~~i~INQ~R~~ig~~~g~~~~t~GG~alkfyas~rl~i~k~~~ 224 (322)
T PF00154_consen 171 KLTPLLSKSNTTLIFINQVRDKIGVMFGNPETTPGGRALKFYASVRLEIRKKEQ 224 (322)
T ss_dssp HHHHHHHTTT-EEEEEEEESSSSSSSSSSSSCCTSHHHHHHHCSEEEEEEEEEE
T ss_pred HHHHHHHhhceEEEEeehHHHHHhhccCCCcCCCCCchhhhhhhhHHhhhcccc
Confidence 9999999999999999999999875 566677899999999999999998644
No 23
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.92 E-value=9.5e-24 Score=187.20 Aligned_cols=180 Identities=20% Similarity=0.271 Sum_probs=137.6
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCC
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSP 116 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~ 116 (279)
.....+++||+++||++|+||+++|++++|.|+||+|||||+++++.... ...+.++|+++|+.. ..+..... ..
T Consensus 58 ~~~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs~--~qi~~Ra~-rl 132 (372)
T cd01121 58 AEEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEESP--EQIKLRAD-RL 132 (372)
T ss_pred ccccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcCH--HHHHHHHH-Hc
Confidence 33567899999999999999999999999999999999999999998886 233459999999763 22222111 12
Q ss_pred CCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCc
Q psy2198 117 LAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRI 196 (279)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~ 196 (279)
++ ..+++.+....+.+++.+.+.+ .++++||||+++.++..+..+..+ ...++++++..|.++++++++
T Consensus 133 g~---~~~~l~l~~e~~le~I~~~i~~------~~~~lVVIDSIq~l~~~~~~~~~g--~~~qvr~~~~~L~~lak~~~i 201 (372)
T cd01121 133 GI---STENLYLLAETNLEDILASIEE------LKPDLVIIDSIQTVYSSELTSAPG--SVSQVRECTAELMRFAKERNI 201 (372)
T ss_pred CC---CcccEEEEccCcHHHHHHHHHh------cCCcEEEEcchHHhhccccccCCC--CHHHHHHHHHHHHHHHHHcCC
Confidence 22 2356677777777777776643 478999999999987654433222 345688899999999999999
Q ss_pred EEEEecccccccCCCCCccCccccchhhhhhhheeeeccccc
Q psy2198 197 VVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 197 ~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
++|+++|.+++.. .+++..+++.+|..+++++.+..
T Consensus 202 tvilvghvtk~g~------~aG~~~leh~vD~Vi~le~~~~~ 237 (372)
T cd01121 202 PIFIVGHVTKEGS------IAGPKVLEHMVDTVLYFEGDRHS 237 (372)
T ss_pred eEEEEeeccCCCc------ccCcccchhhceEEEEEEcCCCC
Confidence 9999999988643 35567889999999999876653
No 24
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.91 E-value=1.7e-23 Score=190.42 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=134.9
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
....+++||+++||++|+||+++|++++|.|+||+|||||+++++.... ...+.++|+++|+.. ..+..... ..+
T Consensus 71 ~~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs~--~qi~~ra~-rlg 145 (454)
T TIGR00416 71 EEVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEESL--QQIKMRAI-RLG 145 (454)
T ss_pred cccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCCH--HHHHHHHH-HcC
Confidence 3467899999999999999999999999999999999999999998875 233459999999763 22221111 122
Q ss_pred CCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcE
Q psy2198 118 AKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIV 197 (279)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~ 197 (279)
+ ..+++++....+.+++...+.+ .+++++|||+++.++..+..+..+ ...++++++..|.++++++|+|
T Consensus 146 ~---~~~~l~~~~e~~~~~I~~~i~~------~~~~~vVIDSIq~l~~~~~~~~~g--~~~q~r~~~~~L~~~ak~~giT 214 (454)
T TIGR00416 146 L---PEPNLYVLSETNWEQICANIEE------ENPQACVIDSIQTLYSPDISSAPG--SVSQVRECTAELMRLAKTRGIA 214 (454)
T ss_pred C---ChHHeEEcCCCCHHHHHHHHHh------cCCcEEEEecchhhcccccccCCC--CHHHHHHHHHHHHHHHHHhCCE
Confidence 2 2357777777777777666644 467999999999987655433222 2346778889999999999999
Q ss_pred EEEecccccccCCCCCccCccccchhhhhhhheeeecccc
Q psy2198 198 VICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 198 vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
+++++|.+++.. .+++..+++.+|..+++++.+.
T Consensus 215 vllt~hvtkeg~------~aG~~~le~lvD~VI~Le~~~~ 248 (454)
T TIGR00416 215 IFIVGHVTKEGS------IAGPKVLEHMVDTVLYFEGDRD 248 (454)
T ss_pred EEEEeccccCCc------cCCcccEeeeceEEEEEeccCC
Confidence 999999987532 3445678999999999987554
No 25
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.91 E-value=5.7e-23 Score=186.98 Aligned_cols=177 Identities=24% Similarity=0.282 Sum_probs=134.2
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCC
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSP 116 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~ 116 (279)
.....+++||+++||++|+||+++|++++|.|+||+|||||+++++...+ ...+.++|+++|+... .+..... ..
T Consensus 56 ~~~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees~~--qi~~ra~-rl 130 (446)
T PRK11823 56 AEEEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEESAS--QIKLRAE-RL 130 (446)
T ss_pred cccCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccccHH--HHHHHHH-Hc
Confidence 33567899999999999999999999999999999999999999999875 2334599999998632 2222112 12
Q ss_pred CCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCc
Q psy2198 117 LAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRI 196 (279)
Q Consensus 117 ~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~ 196 (279)
++. .+++.+....+.+++.+.+.+ .+++++|||+++.++..++.+..+ +..++++++..|.++++++++
T Consensus 131 g~~---~~~l~~~~e~~l~~i~~~i~~------~~~~lVVIDSIq~l~~~~~~~~~g--~~~qvr~~~~~L~~~ak~~~i 199 (446)
T PRK11823 131 GLP---SDNLYLLAETNLEAILATIEE------EKPDLVVIDSIQTMYSPELESAPG--SVSQVRECAAELMRLAKQRGI 199 (446)
T ss_pred CCC---hhcEEEeCCCCHHHHHHHHHh------hCCCEEEEechhhhccccccCCCC--CHHHHHHHHHHHHHHHHHcCC
Confidence 221 235677767777777666643 477999999999988765443222 345678888999999999999
Q ss_pred EEEEecccccccCCCCCccCccccchhhhhhhheeeecc
Q psy2198 197 VVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYL 235 (279)
Q Consensus 197 ~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~ 235 (279)
++++++|.+++.. .+++..+++.+|.++++.+.
T Consensus 200 tvilv~hvtk~~~------~ag~~~lehlvD~Vi~le~~ 232 (446)
T PRK11823 200 AVFLVGHVTKEGA------IAGPRVLEHMVDTVLYFEGD 232 (446)
T ss_pred EEEEEeeccCCCC------cCCcchhhhhCeEEEEEEcC
Confidence 9999999987542 24456789999999988753
No 26
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.89 E-value=9.3e-22 Score=167.51 Aligned_cols=179 Identities=23% Similarity=0.234 Sum_probs=123.9
Q ss_pred ceeccCChhhhhhh--------------CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHH
Q psy2198 41 IVVSTGSEKFDSIL--------------KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTA 106 (279)
Q Consensus 41 ~~i~tg~~~LD~~L--------------~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~ 106 (279)
.+++||++.||.+| +||+++|.+++|+|+||+|||+|+.+++...+ .....++|+++|++. ..
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee~~-~~ 78 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVESPA-NF 78 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCCc-hH
Confidence 36899999999999 59999999999999999999999999998875 133349999999642 11
Q ss_pred HHHHHHHh--CCCCCcc-ccCcEEEEecCC-------HHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHH
Q psy2198 107 RLAQLCEL--SPLAKPK-CSDKIFITHCYE-------FIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQR 176 (279)
Q Consensus 107 ~~~~~~~~--~~~~~~~-~~~~i~~~~~~~-------~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~ 176 (279)
...++..+ ..++..+ ..+++.+..+.+ .+++...+...+ ...+++++||||++.++...
T Consensus 79 ~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i--~~~~~~~vVIDSls~l~~~~--------- 147 (259)
T TIGR03878 79 VYTSLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAI--KEYKVKNTVIDSITGLYEAK--------- 147 (259)
T ss_pred HHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHH--HhhCCCEEEEcCchHhcccc---------
Confidence 11122211 2233322 445677766544 334444444333 45689999999999875421
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeec
Q psy2198 177 AHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHY 234 (279)
Q Consensus 177 ~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k 234 (279)
....+++...|..++++.++|+++++|....... ....+.++..+++.+|..++++.
T Consensus 148 ~~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~-~~~~~~~~~~~~~l~D~vI~L~~ 204 (259)
T TIGR03878 148 EMMAREIVRQLFNFMKKWYQTALFVSQKRSGHEE-LSAEAAGGYAVSHIVDGTIVLAK 204 (259)
T ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEeccccCccc-ccccccCCcceeEeeccEEEEee
Confidence 1234566777788888899999999997764322 12245566667888999888885
No 27
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.87 E-value=4.2e-21 Score=161.70 Aligned_cols=176 Identities=20% Similarity=0.149 Sum_probs=117.1
Q ss_pred eeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc
Q psy2198 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK 121 (279)
Q Consensus 42 ~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~ 121 (279)
+++||++.||++|+||+++|+++.|.|+||+|||+|+.+++...+ .....++|+++|+. .+.+.+-+.. .++..+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~--~~~i~~~~~~-~g~~~~ 76 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEH--PVQVRRNMAQ-FGWDVR 76 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCC--HHHHHHHHHH-hCCCHH
Confidence 589999999999999999999999999999999999999988765 23334999999985 2222222221 122211
Q ss_pred ---ccCcEEEEe-------------------cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHH
Q psy2198 122 ---CSDKIFITH-------------------CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHD 179 (279)
Q Consensus 122 ---~~~~i~~~~-------------------~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~ 179 (279)
...++.+.. +.+.+++...+.+.+ ...+++++||||++.++... . ..
T Consensus 77 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~~~~~~vVIDSls~l~~~~----~-----~~ 145 (237)
T TIGR03877 77 KYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAI--RDINAKRVVIDSVTTLYITK----P-----AM 145 (237)
T ss_pred HHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHH--HHhCCCEEEEcChhHhhcCC----h-----HH
Confidence 112333332 234555555555554 44578899999999875421 1 11
Q ss_pred HHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeecccccc
Q psy2198 180 MRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 180 ~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
.++++..|.++++++|+|+++++|....... ..+..+++.+|..+.++......
T Consensus 146 ~r~~l~~l~~~lk~~~~t~llt~~~~~~~~~------~~~~~~~~~~D~vI~L~~~~~~~ 199 (237)
T TIGR03877 146 ARSIVMQLKRVLSGLGCTSIFVSQVSVGERG------FGGPGVEHAVDGIIRLDLDEIDG 199 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECccccccc------ccccceEEEEeEEEEEEEEeeCC
Confidence 2356677888888999999999988653221 11123456777777777655443
No 28
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.87 E-value=1e-20 Score=162.63 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=133.3
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
+..+++||++.||.++ ||+++|+++.|.|+||+|||+|+.+++..++. . ...|+|++.|+.. .....++.+...+
T Consensus 9 ~~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~--~~g~~vl~iS~E~~~-~~~~~r~~~~~~~ 84 (271)
T cd01122 9 SNEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLIT--QHGVRVGTISLEEPV-VRTARRLLGQYAG 84 (271)
T ss_pred cccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH--hcCceEEEEEcccCH-HHHHHHHHHHHhC
Confidence 3458999999999997 89999999999999999999999999988752 2 3349999999862 2222333332222
Q ss_pred CCcc-------------------c--cCcEEEEec---CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchh
Q psy2198 118 AKPK-------------------C--SDKIFITHC---YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 118 ~~~~-------------------~--~~~i~~~~~---~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
.... . ..++++... .+++++.+.+.... ...++++||||+++.+.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~l~~~~~~~--- 159 (271)
T cd01122 85 KRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA--VSHGIQHIIIDNLSIMVSDERAS--- 159 (271)
T ss_pred CCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH--hcCCceEEEECCHHHHhccCCCc---
Confidence 1110 1 123444432 25677777776654 45689999999999876432111
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC------C--CCccCccccchhhhhhhheeeecccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH------S--DKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~------~--~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
......+.++++.|++++++++++|++++|.++.... + ......++..+++.++..+.+++...
T Consensus 160 ~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~ 231 (271)
T cd01122 160 GDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ 231 (271)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCc
Confidence 1134556789999999999999999999999886532 1 11223456678899999999988654
No 29
>PRK04328 hypothetical protein; Provisional
Probab=99.86 E-value=2e-20 Score=158.54 Aligned_cols=174 Identities=21% Similarity=0.157 Sum_probs=115.3
Q ss_pred ceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCc
Q psy2198 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKP 120 (279)
Q Consensus 41 ~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~ 120 (279)
++++||++.||++|+||+++|.++.|.|+||+|||+|+.+++...+ .....++|+++|+. ++.+.+.+.. .+++.
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~--~~~i~~~~~~-~g~d~ 77 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEH--PVQVRRNMRQ-FGWDV 77 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCC--HHHHHHHHHH-cCCCH
Confidence 5799999999999999999999999999999999999999998764 23334999999985 3333333222 22222
Q ss_pred c---ccCcEEEEec-------------------CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHH
Q psy2198 121 K---CSDKIFITHC-------------------YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAH 178 (279)
Q Consensus 121 ~---~~~~i~~~~~-------------------~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~ 178 (279)
+ ...++.+..+ .+..++...+.+.+ ...+++++||||++.++... . .
T Consensus 78 ~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~~~~~~vVIDSlt~l~~~~----~-----~ 146 (249)
T PRK04328 78 RKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAI--KDIGAKRVVIDSVSTLYLTK----P-----A 146 (249)
T ss_pred HHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHH--HhhCCCEEEEeChhHhhcCC----h-----H
Confidence 1 1123333322 23444555555444 44578999999999875421 1 1
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeeccc
Q psy2198 179 DMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 179 ~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
..++++..|.+++++.|+|+++++|...... +..+...++.+|..+.++...
T Consensus 147 ~~r~~~~~l~~~lk~~g~t~llt~e~~~~~~------~~~~~~~~~~~D~vI~L~~~~ 198 (249)
T PRK04328 147 MARSIVMQLKRVLSGLGCTAIFVSQVSVGER------GFGGPGVEHAVDGIIRLDLDE 198 (249)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECcccccc------ccCCCCcEEEEEEEEEEEEEe
Confidence 1235667777777889999999998875321 122233455667666666544
No 30
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.85 E-value=1.6e-20 Score=157.15 Aligned_cols=174 Identities=24% Similarity=0.266 Sum_probs=116.5
Q ss_pred eccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc
Q psy2198 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTESVFPTARLAQLCELSPLAKPK 121 (279)
Q Consensus 43 i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~ 121 (279)
|+||+++||.+|+||+|+|++++|.|+||+|||+|+++++...+ .. ...++|++++++ . .+++++...+.++
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~--~---~~l~~~~~s~g~d 73 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP--P---EELIENMKSFGWD 73 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS---H---HHHHHHHHTTTS-
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC--H---HHHHHHHHHcCCc
Confidence 68999999999999999999999999999999999999998776 23 345999999976 2 3333333344443
Q ss_pred -----ccCcEEEEec---------CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHH
Q psy2198 122 -----CSDKIFITHC---------YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYL 187 (279)
Q Consensus 122 -----~~~~i~~~~~---------~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L 187 (279)
....+.+... .+.+++...+.+.+ ...+++++|||+++.+.. .... ...+.++..|
T Consensus 74 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i--~~~~~~~vVIDsls~l~~-~~~~-------~~~r~~l~~l 143 (226)
T PF06745_consen 74 LEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAI--EELKPDRVVIDSLSALLL-YDDP-------EELRRFLRAL 143 (226)
T ss_dssp HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHH--HHHTSSEEEEETHHHHTT-SSSG-------GGHHHHHHHH
T ss_pred HHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHH--HhcCCCEEEEECHHHHhh-cCCH-------HHHHHHHHHH
Confidence 2234666543 34566666666654 334569999999999822 1111 2234566777
Q ss_pred HHHHHHcCcEEEEecccccccCCCCCccCccccchhh-hhhhheeeecccccc
Q psy2198 188 HELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYER-AHDMRDLAHYLHEIS 239 (279)
Q Consensus 188 ~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~-~~~~rl~l~k~~~~~ 239 (279)
.+..++.+++++++.|...... +.....+.+ .+|..+.++......
T Consensus 144 ~~~l~~~~~t~llt~~~~~~~~------~~~~~~i~~~l~D~vI~L~~~~~~~ 190 (226)
T PF06745_consen 144 IKFLKSRGVTTLLTSEMPSGSE------DDGTFGIEHYLADGVIELRYEEEGG 190 (226)
T ss_dssp HHHHHHTTEEEEEEEEESSSSS------SSSSTSHHHHHSSEEEEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEccccCcc------cccccchhhhcccEEEEEEEEeeCC
Confidence 7777789999999998655322 123344555 778777777655444
No 31
>PHA02542 41 41 helicase; Provisional
Probab=99.85 E-value=6.2e-20 Score=167.54 Aligned_cols=211 Identities=16% Similarity=0.076 Sum_probs=144.4
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...++|||++.||++++||+.+|+++.|.|+||.|||+|+.+++..++ .....|+||+.|++. .....+++....+.
T Consensus 168 ~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a--~~g~~Vl~fSLEM~~-~ql~~Rl~a~~~~i 244 (473)
T PHA02542 168 KANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL--QQGYNVLYISMEMAE-EVIAKRIDANLLDV 244 (473)
T ss_pred CCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEEeccCCH-HHHHHHHHHHHcCC
Confidence 367899999999999879999999999999999999999999998886 233359999999872 22223333322222
Q ss_pred Ccc--------------------ccCcEEEE----ecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK--------------------CSDKIFIT----HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~--------------------~~~~i~~~----~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ...++++. ...+..++...+++.......++++||||+|+.+........ ..
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~-~~ 323 (473)
T PHA02542 245 SLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVS-SE 323 (473)
T ss_pred CHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCC-CC
Confidence 211 11234333 234567888877776532222489999999998643221111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCC---ccCccccchhhhhhhheeeeccccccc-eeeEEEEecc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDK---NIPALGLTYERAHDMRDLAHYLHEISI-KHWIVVICTN 250 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~---~~~~~g~~~~~~~~~rl~l~k~~~~~~-~~~~~v~~~~ 250 (279)
.+...+..+.+.||.+|++++|+||+++|.++..+.+.. ....++..+++.+|..+++.+...... ......+..|
T Consensus 324 nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l~r~~~~~~~~~~eliv~Kn 403 (473)
T PHA02542 324 NSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAVIETEELAQMGQQLVKQLKS 403 (473)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEEecCcccccCCeEEEEEecC
Confidence 366788999999999999999999999999999876222 222345567899999999988654332 2334444444
Q ss_pred ccc
Q psy2198 251 QVT 253 (279)
Q Consensus 251 ~~~ 253 (279)
.-.
T Consensus 404 R~G 406 (473)
T PHA02542 404 RYG 406 (473)
T ss_pred CCC
Confidence 433
No 32
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.85 E-value=2.1e-20 Score=159.61 Aligned_cols=190 Identities=20% Similarity=0.285 Sum_probs=131.6
Q ss_pred eeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc
Q psy2198 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK 121 (279)
Q Consensus 42 ~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~ 121 (279)
+|+||++.||+++ ||+.+|+++.|.|+||+|||+|+.+++..++.. ....|+|++.|++ ..+...+++....+....
T Consensus 1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~-~~~~vly~SlEm~-~~~l~~R~la~~s~v~~~ 77 (259)
T PF03796_consen 1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAALN-GGYPVLYFSLEMS-EEELAARLLARLSGVPYN 77 (259)
T ss_dssp SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT-TSSEEEEEESSS--HHHHHHHHHHHHHTSTHH
T ss_pred CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHHh-cCCeEEEEcCCCC-HHHHHHHHHHHhhcchhh
Confidence 5899999999998 599999999999999999999999999998731 1245999999987 222333333332222111
Q ss_pred ---------------------c-cCcEEEEe--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 122 ---------------------C-SDKIFITH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 122 ---------------------~-~~~i~~~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
. ...+++.. ..+++++...+..... ...++++||||+++.+-...... .+.
T Consensus 78 ~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~~~~~~----~~~ 152 (259)
T PF03796_consen 78 KIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKSEDSSD----NRR 152 (259)
T ss_dssp HHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBTSCSSS----CCH
T ss_pred hhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcCCCCCC----CHH
Confidence 1 12344433 3467888887776653 22789999999999875533111 145
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeecccccc
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
..+..+++.|+++|++++++||+++|.++..+......|. ++..+++.++..+++.+.....
T Consensus 153 ~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~ 219 (259)
T PF03796_consen 153 QEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYD 219 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhc
Confidence 6788999999999999999999999999887653333343 4566889999999999866543
No 33
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.84 E-value=6.9e-20 Score=166.82 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=137.1
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK 119 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~ 119 (279)
..+++||++.||++++ |+.+|++++|.|+||+|||+|+.+++..++.. ....|+|++.|++ ......+++....+..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~-~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMS-AEQLGERLLASKSGIN 250 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCC-HHHHHHHHHHHHcCCC
Confidence 5789999999999975 99999999999999999999999999777521 2334999999976 2233334443333222
Q ss_pred cc----------------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 120 PK----------------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 120 ~~----------------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
.. ...++++... .+++++...+++... ..+++++||||+|+.+... .+ ..
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDyLql~~~~--~~---~~ 324 (421)
T TIGR03600 251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKR-KKGGLDLIVVDYIQLMAPT--RG---RD 324 (421)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEecccccCCC--CC---CC
Confidence 11 0124555443 567888887776642 2237899999999986432 11 12
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeecccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~~ 237 (279)
+...+..+.+.|+.+|++++++||+++|.++..+.....+|. ++..+++.+|..+++.+..-
T Consensus 325 ~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~ 391 (421)
T TIGR03600 325 RNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGY 391 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccc
Confidence 556788999999999999999999999999887653333343 45567899999999998653
No 34
>PRK09165 replicative DNA helicase; Provisional
Probab=99.84 E-value=7.1e-20 Score=168.89 Aligned_cols=191 Identities=17% Similarity=0.230 Sum_probs=138.0
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC-------------CCCeEEEEECCCCCCH
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ-------------PHKGVLYICTESVFPT 105 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-------------~~~gvlyi~~e~~~~~ 105 (279)
...+++||++.||.++ ||+.+|+++.|.|+||+|||+|+++++..++... ....|+||+.|++ ..
T Consensus 196 ~~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ 273 (497)
T PRK09165 196 HLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AE 273 (497)
T ss_pred CCCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HH
Confidence 4568999999999997 6899999999999999999999999998875321 1234999999987 23
Q ss_pred HHHHHHHHhCCCCCcc----------------------ccCcEEEEe--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcc
Q psy2198 106 ARLAQLCELSPLAKPK----------------------CSDKIFITH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIA 161 (279)
Q Consensus 106 ~~~~~~~~~~~~~~~~----------------------~~~~i~~~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~ 161 (279)
+...++++...++... ...++++.. ..++.++...+++.. ..+++++||||+++
T Consensus 274 ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLq 351 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQ 351 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchH
Confidence 3333444433232211 011344443 346788888887765 44679999999999
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeecc
Q psy2198 162 GIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYL 235 (279)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~ 235 (279)
.+........+ .+..++..+.+.|+.+|++.+|+||+++|.++..+.....+|. ++..+++.+|..+++++.
T Consensus 352 li~~~~~~~~~--~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 428 (497)
T PRK09165 352 LIRGSSKRSSD--NRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVYRE 428 (497)
T ss_pred hccCCCCCCCC--chHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEeeh
Confidence 76432211111 2667799999999999999999999999999987653333343 355678999999999875
No 35
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.84 E-value=1.1e-19 Score=166.16 Aligned_cols=189 Identities=16% Similarity=0.237 Sum_probs=135.2
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||.++ ||+++|++++|.|+||+|||+|+.+++..++.. ....|+|++.|++ ..+...+++....++
T Consensus 174 ~~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~-~~~i~~R~~~~~~~v 250 (434)
T TIGR00665 174 GITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMS-AEQLAMRMLSSESRV 250 (434)
T ss_pred CCCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCC-HHHHHHHHHHHhcCC
Confidence 4578999999999997 699999999999999999999999999887521 1234999999986 222333343332222
Q ss_pred Ccc---------------------c-cCcEEEEe--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK---------------------C-SDKIFITH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~---------------------~-~~~i~~~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... . ...+++.. ..++.++...+.... ...++++||||+++.+..... . .
T Consensus 251 ~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~~~~~--~--~ 324 (434)
T TIGR00665 251 DSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMSGSGR--S--E 324 (434)
T ss_pred CHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcCCCCC--C--C
Confidence 110 0 11344433 246788888777665 345799999999987642211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccC-----ccccchhhhhhhheeeeccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIP-----ALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~-----~~g~~~~~~~~~rl~l~k~~ 236 (279)
.+...+..+.+.|+.+|++++|+||+++|.++..+......| .++..+++.++..+++++..
T Consensus 325 ~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~ 391 (434)
T TIGR00665 325 NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDE 391 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEecccc
Confidence 255678889999999999999999999999987654233333 34566789999999998754
No 36
>PRK06321 replicative DNA helicase; Provisional
Probab=99.83 E-value=2.6e-19 Score=163.59 Aligned_cols=191 Identities=14% Similarity=0.197 Sum_probs=137.2
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...++|||++.||+++ ||+++|+++.|.|.||+|||+|+++++..++.. ....|+||+.|++ ......++++...+.
T Consensus 205 ~~~Gi~tG~~~LD~~t-~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs-~~ql~~Rlla~~s~v 281 (472)
T PRK06321 205 MISGIPTHFIDLDKMI-NGFSPSNLMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMT-VDQLIHRIICSRSEV 281 (472)
T ss_pred CCCccccCcHHHHHHh-cCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCC-HHHHHHHHHHhhcCC
Confidence 3578999999999996 599999999999999999999999999887521 2335999999987 223333333322221
Q ss_pred Ccc----------------------ccCcEEEEe--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK----------------------CSDKIFITH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ....+++.. ..+..++...++... ...++++||||+|+.+...... ....
T Consensus 282 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~~~~~~-~~~~ 358 (472)
T PRK06321 282 ESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLSGSGNL-RNSE 358 (472)
T ss_pred CHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcCCCCcc-CCcc
Confidence 111 112344443 346788888777765 4467899999999876422110 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeecc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYL 235 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~ 235 (279)
.+...+..+.+.||.+|++.+++||+++|.++..+.....+|.+ +..+++.+|..+++++.
T Consensus 359 ~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~ 424 (472)
T PRK06321 359 SRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRR 424 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEech
Confidence 36678899999999999999999999999999887644445544 44578999999999874
No 37
>PRK08506 replicative DNA helicase; Provisional
Probab=99.83 E-value=1.9e-19 Score=165.15 Aligned_cols=189 Identities=17% Similarity=0.270 Sum_probs=137.6
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ ||+.+|+++.|.|+||+|||+|+.+++..++ .....|+||+.|++ ..+...++++...+.
T Consensus 171 ~~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~--~~g~~V~~fSlEMs-~~ql~~Rlla~~s~v 246 (472)
T PRK08506 171 DIIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKAL--NQDKGVAFFSLEMP-AEQLMLRMLSAKTSI 246 (472)
T ss_pred CCCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHH--hcCCcEEEEeCcCC-HHHHHHHHHHHhcCC
Confidence 3568999999999996 8999999999999999999999999999885 23334999999976 233333444432222
Q ss_pred Ccc----------------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK----------------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ...++++... .++.++...++.... ..+++++||||+|+.+..... ..
T Consensus 247 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~~~~~----~~ 321 (472)
T PRK08506 247 PLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMSGSGN----FK 321 (472)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhccCCCC----CC
Confidence 111 1234555443 467888888877642 234689999999986642211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeeccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~ 236 (279)
.+...+..+.+.|+.+|++++|+||+++|.++..+.....+|. ++..+++.+|..+++.+..
T Consensus 322 ~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~ 388 (472)
T PRK08506 322 DRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDD 388 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEeccc
Confidence 2567788999999999999999999999999987653333443 3555889999999999864
No 38
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.83 E-value=3.9e-19 Score=149.11 Aligned_cols=178 Identities=21% Similarity=0.288 Sum_probs=118.2
Q ss_pred eeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc
Q psy2198 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK 121 (279)
Q Consensus 42 ~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~ 121 (279)
+++||++.||++|+||+++|++++|.|+||+|||+|+.+++...+ .....++|+++++.. +.+.+... ..++..+
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~~--~~i~~~~~-~~g~~~~ 75 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEESR--ESIIRQAA-QFGMDFE 75 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCCH--HHHHHHHH-HhCCCHH
Confidence 479999999999999999999999999999999999999987665 234459999998762 22222211 1222222
Q ss_pred -c--cCcEEEE-------------ecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHH
Q psy2198 122 -C--SDKIFIT-------------HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAH 185 (279)
Q Consensus 122 -~--~~~i~~~-------------~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (279)
. ..++.+. ...+.+++...+.+.......+++++|||+++.++... + ...+++..
T Consensus 76 ~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~----~-----~~~r~~~~ 146 (229)
T TIGR03881 76 KAIEEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDK----P-----AMARKYSY 146 (229)
T ss_pred HHhhcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccC----h-----HHHHHHHH
Confidence 1 1123322 12456777777776653222357899999999875321 1 12345677
Q ss_pred HHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeecccccc
Q psy2198 186 YLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 186 ~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
.|+++++++|+|+|+++|....... ..+...++.+|..+.++......
T Consensus 147 ~l~~~l~~~~~tvil~~~~~~~~~~------~~~~~~~~l~D~vI~L~~~~~~~ 194 (229)
T TIGR03881 147 YLKRVLNRWNFTILLTSQYAITTSQ------AFGFGIEHVADGIIRFRKVVVDG 194 (229)
T ss_pred HHHHHHHhCCCEEEEEecccccCCC------CcccceEEEEeEEEEEEEeccCC
Confidence 7888888899999999996433221 11123456778788777655443
No 39
>PRK08760 replicative DNA helicase; Provisional
Probab=99.83 E-value=1.7e-19 Score=165.41 Aligned_cols=189 Identities=20% Similarity=0.237 Sum_probs=136.4
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ ||+.+|+++.|.|+||+|||+|+++++..++.. ....|+||+.|+.. .....+++....++
T Consensus 208 ~~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~-~ql~~Rl~a~~s~i 284 (476)
T PRK08760 208 NITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSA-SQLAMRLISSNGRI 284 (476)
T ss_pred CCCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCH-HHHHHHHHHhhCCC
Confidence 3568999999999985 679999999999999999999999999887521 12349999999872 22333333322111
Q ss_pred Ccc----------------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK----------------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ...++++... .+++++...++... ..+++++||||+|+.+..... . .
T Consensus 285 ~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~~~~~-~---~ 358 (476)
T PRK08760 285 NAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMSVPGN-S---E 358 (476)
T ss_pred cHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcCCCCC-C---c
Confidence 111 1124444433 46788888777765 346789999999997632211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeeccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~ 236 (279)
.+...+.++.+.||.+|++++|+||+++|.++..+.....+|. ++..+++.+|..+++++..
T Consensus 359 ~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~ 425 (476)
T PRK08760 359 NRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDD 425 (476)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechh
Confidence 2567789999999999999999999999999987653333443 3556789999999998753
No 40
>PRK07004 replicative DNA helicase; Provisional
Probab=99.82 E-value=2.7e-19 Score=163.61 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=137.0
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ ||+++|+++.|.|.||+|||+|+++++...+.. ....|+||+.|+. ......+++.....+
T Consensus 192 ~~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~-~~ql~~R~la~~~~v 268 (460)
T PRK07004 192 DVTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMP-GTQLAMRMLGSVGRL 268 (460)
T ss_pred CCCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCC-HHHHHHHHHHhhcCC
Confidence 3568999999999996 699999999999999999999999999877521 2334999999987 233334443322211
Q ss_pred Ccc----------------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK----------------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ....+++... .++.++...+++... ..+++++||||+|+.+.... .. .
T Consensus 269 ~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~~~~-~~---~ 343 (460)
T PRK07004 269 DQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMSGSS-QG---E 343 (460)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhccCCC-CC---C
Confidence 111 1124455433 456777777776642 23468999999999874321 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeeccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~ 236 (279)
.+...+..+.+.||.+|++++|+||+++|.++..+.....+|. .+..+++.+|..+++++..
T Consensus 344 ~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~ 410 (460)
T PRK07004 344 NRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDE 410 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEecccc
Confidence 2667889999999999999999999999999987653333443 3555789999999999864
No 41
>PRK08006 replicative DNA helicase; Provisional
Probab=99.82 E-value=2.9e-19 Score=163.44 Aligned_cols=190 Identities=13% Similarity=0.198 Sum_probs=138.2
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ |||.+|+++.|.|.||.|||+|+++++..++.. ....|+||+.|++ ......++++...++
T Consensus 203 ~~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~-~~ql~~Rlla~~~~v 279 (471)
T PRK08006 203 GVTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMP-GEQIMMRMLASLSRV 279 (471)
T ss_pred CCCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCC-HHHHHHHHHHHhcCC
Confidence 3568999999999985 799999999999999999999999999887521 2335999999976 233333444332221
Q ss_pred Cc----------c-----------c--cCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchh
Q psy2198 119 KP----------K-----------C--SDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 119 ~~----------~-----------~--~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
.. + . ..++++... .+..++...+++... ..+++++||||+|+.+......
T Consensus 280 ~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~---- 354 (471)
T PRK08006 280 DQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR-EHGGLSLIMIDYLQLMRVPSLS---- 354 (471)
T ss_pred CHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHHccCCCCC----
Confidence 11 1 1 124555443 467888888877642 2347899999999976422211
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeeccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~ 236 (279)
..+...+..+.+.||.+|++++|+||+++|.++..+.....+|.+ +..+++.+|..+++++..
T Consensus 355 ~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~ 422 (471)
T PRK08006 355 DNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDE 422 (471)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEeccc
Confidence 125667899999999999999999999999999887644444544 445789999999998754
No 42
>PRK05748 replicative DNA helicase; Provisional
Probab=99.82 E-value=2.9e-19 Score=163.80 Aligned_cols=191 Identities=14% Similarity=0.226 Sum_probs=135.9
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ ||+++|+++.|.|+||+|||+|+.+++...+.. ....|+||+.|++ ......+++......
T Consensus 182 ~~~gi~TG~~~LD~~~-~G~~~G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms-~~~l~~R~l~~~~~v 258 (448)
T PRK05748 182 DITGIPTGFTDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMG-AESLVMRMLCAEGNI 258 (448)
T ss_pred CCCCccCChHHHHHhc-CCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCC-HHHHHHHHHHHhcCC
Confidence 4578999999999996 599999999999999999999999999887521 2334999999987 223333343322221
Q ss_pred Ccc----------------------ccCcEEEEe--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK----------------------CSDKIFITH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ...++++.. ..++.++...+.+... ..+++++||||+|+.+-.....+ .
T Consensus 259 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~~~~~~~---~ 334 (448)
T PRK05748 259 DAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQGSGRSG---E 334 (448)
T ss_pred CHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcCCCCCCC---c
Confidence 111 112344433 3467888887777652 22378999999999763221111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeeccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~ 236 (279)
.+...+..+.+.|+.+|++++|+||+++|.++..+.....+|. ++..+++.+|..+++++..
T Consensus 335 ~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~ 401 (448)
T PRK05748 335 NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDD 401 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEeccc
Confidence 2566788999999999999999999999999976553334443 3556788889999998754
No 43
>PRK06904 replicative DNA helicase; Validated
Probab=99.82 E-value=3e-19 Score=163.53 Aligned_cols=190 Identities=13% Similarity=0.218 Sum_probs=138.2
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCC-
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL- 117 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~- 117 (279)
...+++||++.||+++ ||+.+|+++.|.|.||+|||+|+++++..++.. ....|+||+.|++ ..+...++++...+
T Consensus 200 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs-~~ql~~Rlla~~s~v 276 (472)
T PRK06904 200 GVTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMP-AEQIMMRMLASLSRV 276 (472)
T ss_pred CCCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCC-HHHHHHHHHHhhCCC
Confidence 4578999999999996 799999999999999999999999999887521 2334999999976 23333344433221
Q ss_pred ----------CCcc-----------c--cCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccch
Q psy2198 118 ----------AKPK-----------C--SDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 118 ----------~~~~-----------~--~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
+..+ . ..++++... .++.++...+++... ..+++++||||+|+.+......
T Consensus 277 ~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~--- 352 (472)
T PRK06904 277 DQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR-ENGGLSLIMVDYLQLMRAPGFE--- 352 (472)
T ss_pred CHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEecHHhcCCCCCC---
Confidence 1111 1 123566543 467888877776542 3346899999999876432221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeeccc
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~ 236 (279)
..+...+.++.+.||.+|++.+|+||+++|.++..+.....+|.+ +..+++.+|..+++++..
T Consensus 353 -~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~ 420 (472)
T PRK06904 353 -DNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDE 420 (472)
T ss_pred -CcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccc
Confidence 126678899999999999999999999999999887644444543 455789999999998864
No 44
>PRK05595 replicative DNA helicase; Provisional
Probab=99.82 E-value=3.3e-19 Score=163.03 Aligned_cols=188 Identities=18% Similarity=0.224 Sum_probs=136.0
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK 119 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~ 119 (279)
..+++||++.||+++ ||+.+|+++.|.|+||+|||+|+.+++..++.. ....|+|++.|++ ......+++....+..
T Consensus 181 ~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms-~~~l~~R~~a~~~~v~ 257 (444)
T PRK05595 181 TTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEMS-KEQLAYKLLCSEANVD 257 (444)
T ss_pred CCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCCC-HHHHHHHHHHHhcCCC
Confidence 468999999999996 799999999999999999999999999875421 2334999999986 2223333333322222
Q ss_pred cc----------------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 120 PK----------------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 120 ~~----------------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
.. ...++++... .++.++...+++.. ...++++||||+++.+.... . ...
T Consensus 258 ~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~--~~~~~~~vvIDylql~~~~~-~---~~~ 331 (444)
T PRK05595 258 MLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLK--IEHGIDMILIDYLQLMSGGK-G---SES 331 (444)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEeHHHhccCCC-C---Ccc
Confidence 11 1124555433 45678877777764 34679999999999764221 1 122
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeeccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~ 236 (279)
+...+..+.+.||.+|++++|+|++++|.++..+.....+|.+ +..+++.+|..+++++..
T Consensus 332 r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~ 397 (444)
T PRK05595 332 RQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDE 397 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEeccc
Confidence 5677899999999999999999999999999887633344443 455788999999998754
No 45
>PRK08840 replicative DNA helicase; Provisional
Probab=99.81 E-value=7.1e-19 Score=160.59 Aligned_cols=190 Identities=13% Similarity=0.205 Sum_probs=138.2
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ ||+.+|+++.|.|.||.|||+|+++++..++.. ....|+||+.|++ ......++++...+.
T Consensus 196 ~~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs-~~ql~~Rlla~~s~v 272 (464)
T PRK08840 196 GVTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMP-AEQLMMRMLASLSRV 272 (464)
T ss_pred CCCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCC-HHHHHHHHHHhhCCC
Confidence 3678999999999986 789999999999999999999999999887521 2334999999976 233333444332221
Q ss_pred Cc----------c-----------c--cCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchh
Q psy2198 119 KP----------K-----------C--SDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 119 ~~----------~-----------~--~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
.. + . ..++++... .+..++...+++... ..+++++||||+|+.+......
T Consensus 273 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~~~~~~---- 347 (464)
T PRK08840 273 DQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMRVPALS---- 347 (464)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcCCCCCC----
Confidence 11 0 1 124565543 467788877777652 2346899999999976322111
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeeccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~ 236 (279)
..+...+..+.+.||.+|++.+|+||+++|.++..+.....+|. ++..+++.+|..+++++..
T Consensus 348 ~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~ 415 (464)
T PRK08840 348 DNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDE 415 (464)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeccc
Confidence 12667789999999999999999999999999988764444443 3455789999999999864
No 46
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.81 E-value=6.1e-19 Score=149.14 Aligned_cols=180 Identities=17% Similarity=0.213 Sum_probs=125.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-------
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK------- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~------- 121 (279)
+||.+++ |+++|++++|.|+||+|||+|+.+++..++.. ....++|++.|+. ..+...++.....++...
T Consensus 2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~~-~~~~~~r~~~~~~~~~~~~~~~~~~ 78 (242)
T cd00984 2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEMS-KEQLLQRLLASESGISLSKLRTGSL 78 (242)
T ss_pred chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCCC-HHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 5899985 99999999999999999999999999888621 1334999999986 233333333322222211
Q ss_pred ---------------ccCcEEEE--ecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHH
Q psy2198 122 ---------------CSDKIFIT--HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLA 184 (279)
Q Consensus 122 ---------------~~~~i~~~--~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~ 184 (279)
...++++. ...+++++...+.... ...++++||||+++.+.... .. ..+...+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~--~~~~~~~vvID~l~~l~~~~-~~---~~~~~~~~~~~ 152 (242)
T cd00984 79 SDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLK--KEHGLGLIVIDYLQLMSGSK-KK---GNRQQEVAEIS 152 (242)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcCchhcCCCC-CC---CCHHHHHHHHH
Confidence 01133332 2356778887777665 44589999999999765332 11 12445678899
Q ss_pred HHHHHHHHHcCcEEEEecccccccCCCCC-----ccCccccchhhhhhhheeeecccc
Q psy2198 185 HYLHELSIKHRIVVICTNQVTSAMTHSDK-----NIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 185 ~~L~~la~~~~~~vi~v~h~~~~~~~~~~-----~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
+.|+++|+++|+++++++|.++....... ....++..+++.++..+++.+...
T Consensus 153 ~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~ 210 (242)
T cd00984 153 RSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEY 210 (242)
T ss_pred HHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccc
Confidence 99999999999999999999986543111 222345667888999999988753
No 47
>PRK05636 replicative DNA helicase; Provisional
Probab=99.81 E-value=6e-19 Score=162.31 Aligned_cols=189 Identities=16% Similarity=0.264 Sum_probs=136.9
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ ||+.+|+++.|.|.||+|||+|+++++..++.. ....++||+.|+. ..+...+++....++
T Consensus 244 ~~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs-~~ql~~R~ls~~s~v 320 (505)
T PRK05636 244 IATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMS-KSEIVMRLLSAEAEV 320 (505)
T ss_pred CCCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCC-HHHHHHHHHHHhcCC
Confidence 3568999999999985 799999999999999999999999999876521 1234899999987 222223333322111
Q ss_pred Cc----------c------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KP----------K------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~----------~------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
.. + ...++++... .++.++...++... ..+++++||||+|+.+-.... ..
T Consensus 321 ~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~--~~~~~~lvvIDYLql~~~~~~----~~ 394 (505)
T PRK05636 321 RLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLK--QKHDLKLIVVDYLQLMSSGKR----VE 394 (505)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcCCCCC----CC
Confidence 11 1 1234555443 45778888877765 346799999999997642211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeeccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~ 236 (279)
.+...+.++.+.||.+|++.+|+||+++|.++..+.....+|.+ +..+++.+|..+++.+..
T Consensus 395 ~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~ 461 (505)
T PRK05636 395 SRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPD 461 (505)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEeccc
Confidence 25678899999999999999999999999999987633334544 456789999999998754
No 48
>KOG1433|consensus
Probab=99.80 E-value=2.3e-19 Score=154.35 Aligned_cols=226 Identities=26% Similarity=0.341 Sum_probs=160.9
Q ss_pred hhcCccHHHHHHHHHHHhhcccccCCCCCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q psy2198 8 LKLGFQEWEVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV 87 (279)
Q Consensus 8 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~ 87 (279)
++.|+++....++.-...+.... . ..+.....++||..+||++|+||++.|.+++|+||||+|||.|++.++....
T Consensus 61 ~i~~~s~~~~~k~~~~l~~~~~~-~--~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~- 136 (326)
T KOG1433|consen 61 LIIGLSEAKSGKTVLGLHKLVPM-L--QLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCG- 136 (326)
T ss_pred eeeeecccccccHHHHHHHhhHH-H--HhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhcc-
Confidence 34444444444444433333211 0 2344567899999999999999999999999999999999999988887641
Q ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhcc-CCCCeeEEEEeCcchhhcc
Q psy2198 88 SQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGF-IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 88 ~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~ 166 (279)
-..+.++|+|.+..+...++..+......-..+...++.+....+.++........... ......++++|+.+..+..
T Consensus 137 -gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~ 215 (326)
T KOG1433|consen 137 -GGEGKVLYIDTESTFRLERLTEIAGRSGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRT 215 (326)
T ss_pred -CCcceEEEEecchhcccchhhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccccc
Confidence 13444999999987776666666544322222133444444445555444444443322 4457899999999999887
Q ss_pred ccccch-hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-----CCCccCccccchhhhhhhheeeeccccc
Q psy2198 167 TYAEDK-YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 167 ~~~~~~-~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
.+.+.. ...+.......++.|++++++++..||++||++...++ .+..++.+|..|+|...+|.++++.++.
T Consensus 216 ~~~g~~~~~a~~~~~~~~~~~l~~la~~~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~~g~ 293 (326)
T KOG1433|consen 216 TFKGRGELSARQMLLAKFLRSLKKLADEFGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKGKGE 293 (326)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhcCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhcccc
Confidence 766632 23455666788899999999999999999999999887 4678889999999999999999994443
No 49
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.80 E-value=2.5e-18 Score=144.69 Aligned_cols=152 Identities=21% Similarity=0.191 Sum_probs=101.4
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
..++++||++.||.+|+||+|+|+++.|+|+||+|||+|+.+++...+ .....++|++.++.. ...+.++ .. .++
T Consensus 3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~~~-~~~~~~~-~~-~g~ 77 (234)
T PRK06067 3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTENTS-KSYLKQM-ES-VKI 77 (234)
T ss_pred CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCCCH-HHHHHHH-HH-CCC
Confidence 345799999999999999999999999999999999999999988765 234459999999762 2222222 21 222
Q ss_pred Ccc---ccCcEEEEe---------cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHH
Q psy2198 119 KPK---CSDKIFITH---------CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHY 186 (279)
Q Consensus 119 ~~~---~~~~i~~~~---------~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (279)
... ....+.+.. ....+++...+.+.+ ...+++++|||+++.+.... ....+.++++.
T Consensus 78 ~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i--~~~~~~~iviDs~t~~~~~~--------~~~~~~~~l~~ 147 (234)
T PRK06067 78 DISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFI--KSKREDVIIIDSLTIFATYA--------EEDDILNFLTE 147 (234)
T ss_pred ChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHH--HhcCCCEEEEecHHHHHhcC--------CHHHHHHHHHH
Confidence 222 112222221 123355555555554 44688999999999764321 11234556666
Q ss_pred HHHHHHHcCcEEEEeccccc
Q psy2198 187 LHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 187 L~~la~~~~~~vi~v~h~~~ 206 (279)
++.+++ .++++++++|...
T Consensus 148 l~~l~~-~g~tvllt~~~~~ 166 (234)
T PRK06067 148 AKNLVD-LGKTILITLHPYA 166 (234)
T ss_pred HHHHHh-CCCEEEEEecCCc
Confidence 666655 6899999988654
No 50
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.80 E-value=1.6e-18 Score=160.09 Aligned_cols=179 Identities=20% Similarity=0.213 Sum_probs=123.6
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
...+++||+++||++|+||+++|.++.|.||||+|||||+.+++...+ ..| .++|+++|++ ..++..+...
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs-----~~~i~~~~~~ 312 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES-----RAQLLRNAYS 312 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC-----HHHHHHHHHH
Confidence 566899999999999999999999999999999999999999999886 344 4999999987 2444443333
Q ss_pred CCccc-----cCcEEEEe----cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHH
Q psy2198 118 AKPKC-----SDKIFITH----CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLH 188 (279)
Q Consensus 118 ~~~~~-----~~~i~~~~----~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 188 (279)
+..+. ...+.+.. ..++++....+.+.+ ...++++|||||++.+... +.. .+.++++..|.
T Consensus 313 lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i--~~~~~~~vvIDsi~~~~~~-~~~-------~~~r~~~~~l~ 382 (484)
T TIGR02655 313 WGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEI--ADFKPARIAIDSLSALARG-VSN-------NAFRQFVIGVT 382 (484)
T ss_pred cCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHH--HHcCCCEEEEcCHHHHHHh-cCH-------HHHHHHHHHHH
Confidence 33331 12355443 234566666666655 5568899999999987653 221 23355667777
Q ss_pred HHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeecccccc
Q psy2198 189 ELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 189 ~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
+++++.++|+++++........ ...+ ....++.+|..++++-.....
T Consensus 383 ~~lk~~~it~~~t~~~~~~~~~--~~~~--~~~~s~l~D~ii~l~~~e~~g 429 (484)
T TIGR02655 383 GYAKQEEITGFFTNTSDQFMGS--HSIT--DSHISTITDTILMLQYVEIRG 429 (484)
T ss_pred HHHhhCCCeEEEeecccccccC--CccC--CCCeeEeeeEEEEEEEEecCC
Confidence 8888999999999776543221 0011 112355677777766555443
No 51
>PRK06749 replicative DNA helicase; Provisional
Probab=99.79 E-value=2.3e-18 Score=155.96 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=134.9
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...++|||++.||+++ ||+.+|+++.|.|.||.|||+|+++++..++ .....|+||+.|++ ......++++...++
T Consensus 165 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a--~~g~~v~~fSlEMs-~~ql~~R~ls~~~~i 240 (428)
T PRK06749 165 EITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAA--KSGAAVGLFSLEMS-SKQLLKRMASCVGEV 240 (428)
T ss_pred CCCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHH--hcCCCEEEEEeeCC-HHHHHHHHHHhccCC
Confidence 4578999999999985 7999999999999999999999999999986 23334999999987 222333343332111
Q ss_pred C------------cc------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccch
Q psy2198 119 K------------PK------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 119 ~------------~~------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
. .+ ...++++... .+..++...++.........+.+||||+|+.+.......
T Consensus 241 ~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~~~-- 318 (428)
T PRK06749 241 SGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPKHK-- 318 (428)
T ss_pred CHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCCCC--
Confidence 1 00 0123444443 456777777776643111225699999999764211111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeeccc
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~ 236 (279)
..+...+..+.+.||.+|++++|+||+++|.++..+.....+|.+ +..+++.+|..+++++..
T Consensus 319 -~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~ 386 (428)
T PRK06749 319 -GNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYRED 386 (428)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeecc
Confidence 125677899999999999999999999999999887644444543 455788999999999864
No 52
>PRK05973 replicative DNA helicase; Provisional
Probab=99.78 E-value=1.8e-18 Score=143.92 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=106.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEE
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFI 128 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 128 (279)
+|++ .||+++|++++|.|+||+|||+|+.+++...+ .....++|++.|+. ......++.. .++..+ ..+.+.+
T Consensus 54 ~~~l-~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes-~~~i~~R~~s--~g~d~~~~~~~~~~ 127 (237)
T PRK05973 54 AEEL-FSQLKPGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT-EQDVRDRLRA--LGADRAQFADLFEF 127 (237)
T ss_pred HHHh-cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC-HHHHHHHHHH--cCCChHHhccceEe
Confidence 6775 68999999999999999999999999999886 23334999999987 2222222221 133222 2222222
Q ss_pred Ee--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 129 TH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 129 ~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
.. ..+.+++...+.. ..++++||||+++.+.... . ...+...++.|+.+++++|+++|+++|..+
T Consensus 128 d~~d~~~~~~ii~~l~~-----~~~~~lVVIDsLq~l~~~~-~-------~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 128 DTSDAICADYIIARLAS-----APRGTLVVIDYLQLLDQRR-E-------KPDLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred ecCCCCCHHHHHHHHHH-----hhCCCEEEEEcHHHHhhcc-c-------chhHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 22 2334443332222 3467999999999864211 1 112456678899999999999999999999
Q ss_pred ccCCCCCccCccccch-hhhhhhhee
Q psy2198 207 AMTHSDKNIPALGLTY-ERAHDMRDL 231 (279)
Q Consensus 207 ~~~~~~~~~~~~g~~~-~~~~~~rl~ 231 (279)
..+......|.+.+.- .+-+|..+|
T Consensus 195 ~~e~~~~~~P~laDlR~~~~~d~~~f 220 (237)
T PRK05973 195 SFDPSAKPLPDIRDVRLPNPLDLSLF 220 (237)
T ss_pred ccccCCCCCCChhhcCCCChhhHHHh
Confidence 9987666677665553 244444443
No 53
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.78 E-value=7.8e-18 Score=156.85 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=103.4
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
...+++||++.||++|+||+++|++++|+|+||+|||+|+++++...+. . ...++|+++|+. .+.+.+.+.. .+
T Consensus 9 ~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~--~~ge~~lyis~ee~--~~~i~~~~~~-~g 83 (509)
T PRK09302 9 GIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIK--RFDEPGVFVTFEES--PEDIIRNVAS-FG 83 (509)
T ss_pred CCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCEEEEEccCC--HHHHHHHHHH-cC
Confidence 5679999999999999999999999999999999999999999987762 2 334999999986 2333322222 12
Q ss_pred CCcc---ccCcEEEEec------------CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHH
Q psy2198 118 AKPK---CSDKIFITHC------------YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRD 182 (279)
Q Consensus 118 ~~~~---~~~~i~~~~~------------~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~ 182 (279)
+... ....+.+... .+.+++...+.+.+ ...+++.+|||+++.++... .. ...+++
T Consensus 84 ~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i--~~~~~~~vVIDSls~l~~~~-d~------~~~~r~ 154 (509)
T PRK09302 84 WDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAI--DKIGAKRVVLDSIEALFSGF-SN------EAVVRR 154 (509)
T ss_pred CCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHH--HhhCCCEEEECCHHHHHhhc-cC------HHHHHH
Confidence 2221 1223333321 23344555555544 45678999999999865432 11 122334
Q ss_pred HHHHHHHHHHHcCcEEEEeccccc
Q psy2198 183 LAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 183 l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
.+..|.+.+++.++|+|++.|...
T Consensus 155 ~l~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 155 ELRRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred HHHHHHHHHHhCCCEEEEEECCcc
Confidence 444555555678999999998765
No 54
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.76 E-value=2.2e-17 Score=153.90 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=118.7
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
....+++||++.||.+|+||+++|.+++|.|+||+|||+|+.+++...+ .....++|+++++. .+.+.+... ..+
T Consensus 250 ~~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~--~~g~~~~yis~e~~--~~~i~~~~~-~~g 324 (509)
T PRK09302 250 SSNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAAC--RRGERCLLFAFEES--RAQLIRNAR-SWG 324 (509)
T ss_pred cccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC--HHHHHHHHH-HcC
Confidence 3567899999999999999999999999999999999999999998875 23345999999976 333333222 223
Q ss_pred CCcc---ccCcEEEEe----cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHH
Q psy2198 118 AKPK---CSDKIFITH----CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHEL 190 (279)
Q Consensus 118 ~~~~---~~~~i~~~~----~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l 190 (279)
++.+ ....+.+.. ..+.+++...+.+.+ ...+++++|||+++.++... . ...+++.+..|.++
T Consensus 325 ~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i--~~~~~~~vVIDslt~l~~~~--~------~~~~~~~l~~l~~~ 394 (509)
T PRK09302 325 IDLEKMEEKGLLKIICARPESYGLEDHLIIIKREI--EEFKPSRVAIDPLSALARGG--S------LNEFRQFVIRLTDY 394 (509)
T ss_pred CChHHHhhcCCceeecCCcccCCHHHHHHHHHHHH--HHcCCCEEEEcCHHHHHHhC--C------HHHHHHHHHHHHHH
Confidence 3222 112222221 234455555555544 44678999999999886422 1 12345667778888
Q ss_pred HHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeeccc
Q psy2198 191 SIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 191 a~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
++++|+++|++++....... ..... ..+++.+|..+.++...
T Consensus 395 ~k~~~~t~l~t~~~~~~~g~-~~~~~---~~~~~l~D~vI~L~~~~ 436 (509)
T PRK09302 395 LKSEEITGLFTNLTPDFMGS-HSITE---SHISSLTDTWILLQYVE 436 (509)
T ss_pred HHhCCCeEEEEeccccccCC-CCCCc---CceEEeeeEEEEEEEee
Confidence 88999999999987654321 00000 12345566666666544
No 55
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.76 E-value=3e-17 Score=151.59 Aligned_cols=151 Identities=20% Similarity=0.275 Sum_probs=99.3
Q ss_pred eeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCCCCCHHHHHHHHHhCCCCCc
Q psy2198 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTESVFPTARLAQLCELSPLAKP 120 (279)
Q Consensus 42 ~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~ 120 (279)
+++||++.||.+|+||+++|.+++|.|+||||||+|+.+++...+. . ...++|+++++. . .++.++...+.+
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~--~~ge~~lyvs~eE~--~---~~l~~~~~~~G~ 74 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII--HFDEPGVFVTFEES--P---QDIIKNARSFGW 74 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEEEEecC--H---HHHHHHHHHcCC
Confidence 5899999999999999999999999999999999999999887541 2 234999999975 2 333333323333
Q ss_pred c-----ccCcEEEEec------------CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHH
Q psy2198 121 K-----CSDKIFITHC------------YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDL 183 (279)
Q Consensus 121 ~-----~~~~i~~~~~------------~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l 183 (279)
+ ...++.+... .+..++...+...+ ....++.|+||++..++... .. .......+
T Consensus 75 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l--s~g~~qRVvIDSl~aL~~~~-~~-----~~~~r~~l 146 (484)
T TIGR02655 75 DLQKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAI--RKYKAKRVSIDSVTAVFQQY-DA-----VSVVRREI 146 (484)
T ss_pred CHHHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHH--HHhCCcEEEEeehhHhhhhc-Cc-----hHHHHHHH
Confidence 3 1223444332 23444444444433 55788999999998865321 11 11122333
Q ss_pred HHHHHHHHHHcCcEEEEeccccccc
Q psy2198 184 AHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 184 ~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.+.++.+ ++.++|+|+++|.....
T Consensus 147 ~~Li~~L-~~~g~TvLLtsh~~~~~ 170 (484)
T TIGR02655 147 FRLVARL-KQIGVTTVMTTERIEEY 170 (484)
T ss_pred HHHHHHH-HHCCCEEEEEecCcccc
Confidence 3444433 35799999999987643
No 56
>PRK07773 replicative DNA helicase; Validated
Probab=99.76 E-value=1.6e-17 Score=163.19 Aligned_cols=177 Identities=19% Similarity=0.292 Sum_probs=128.8
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||.++ ||+++|+++.|.|+||+|||+|+++++..++.. ....|+||+.|++ ......+++....++
T Consensus 196 ~~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~-~~~~V~~fSlEms-~~ql~~R~~s~~~~i 272 (886)
T PRK07773 196 LARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR-HRLAVAIFSLEMS-KEQLVMRLLSAEAKI 272 (886)
T ss_pred CCCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCCC-HHHHHHHHHHHhcCC
Confidence 3578999999999986 899999999999999999999999999988631 1234999999987 222333333322222
Q ss_pred Ccc----------------------ccCcEEEEe--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK----------------------CSDKIFITH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ...++++.. ..++.++...+.... ...++++||||+++.+.... ...
T Consensus 273 ~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~--~~~~~~lvvIDyLql~~~~~----~~~ 346 (886)
T PRK07773 273 KLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLR--QEANLGLIVVDYLQLMTSGK----KYE 346 (886)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchhhcCCCC----CCC
Confidence 111 112344433 246788887777765 34578999999999764221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhh
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYER 224 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~ 224 (279)
.+.+.+.++.+.||.+|++++++||+++|.++..+.....+|.+++.-++
T Consensus 347 ~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres 396 (886)
T PRK07773 347 NRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRES 396 (886)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhc
Confidence 36678899999999999999999999999999887655666766666553
No 57
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.73 E-value=7.1e-17 Score=134.97 Aligned_cols=169 Identities=20% Similarity=0.247 Sum_probs=103.0
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc----
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK---- 121 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~---- 121 (279)
|++.||++|+||+++|++++|.|+||+|||+|+.+++...+ .....++|++.|++ ...+.+. ...+.++
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~--~~g~~~~y~s~e~~--~~~l~~~---~~~~~~~~~~~ 73 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGL--KNGEKAMYISLEER--EERILGY---AKSKGWDLEDY 73 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC--HHHHHHH---HHHcCCChHHH
Confidence 78999999999999999999999999999999999998875 23345999999986 3333332 2233333
Q ss_pred ccCcEEEEecCC------HHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcC
Q psy2198 122 CSDKIFITHCYE------FIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHR 195 (279)
Q Consensus 122 ~~~~i~~~~~~~------~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~ 195 (279)
...++.+.+..+ ..++...+...+ ...+++++|||+++.+... . +.+. .+... +.+.++.+ ++.|
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i--~~~~~~~vVIDsls~l~~~-~-~~~~-~~r~~---l~~l~~~l-k~~~ 144 (224)
T TIGR03880 74 IDKSLYIVRLDPSDFKTSLNRIKNELPILI--KELGASRVVIDPISLLETL-F-DDDA-ERRTE---LFRFYSSL-RETG 144 (224)
T ss_pred HhCCeEEEecCHHHHHhhHHHHHHHHHHHH--HHhCCCEEEEcChHHHhhh-c-CCHH-HHHHH---HHHHHHHH-HhCC
Confidence 122355544322 223333333332 4457899999999986321 1 1111 12222 33333333 3589
Q ss_pred cEEEEecccccccCCCCCccCccccchhhhhhhheeeecc
Q psy2198 196 IVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYL 235 (279)
Q Consensus 196 ~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~ 235 (279)
+++++++|....... . ..-...++.+|..++++..
T Consensus 145 ~tvll~s~~~~~~~~--~---~~~~~~~~l~D~vI~L~~~ 179 (224)
T TIGR03880 145 VTTILTSEADKTNVF--A---SKYGLIEYLADGVIILKYV 179 (224)
T ss_pred CEEEEEEcccCCCCC--c---cCCCceEEEEeEEEEEeee
Confidence 999999998652211 0 0012245667777767533
No 58
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.72 E-value=4.4e-17 Score=132.98 Aligned_cols=160 Identities=22% Similarity=0.248 Sum_probs=87.0
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--------CCCeEEEEECCCCC--CHHHH
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ--------PHKGVLYICTESVF--PTARL 108 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--------~~~gvlyi~~e~~~--~~~~~ 108 (279)
....++++++.+|.++.|++++|+++.|+|++|+|||+++.+++..++... ..+.|+|+++|... -.+|+
T Consensus 10 ~~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl 89 (193)
T PF13481_consen 10 SFEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRL 89 (193)
T ss_dssp ---HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHH
T ss_pred hhhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHH
Confidence 445689999999999999999999999999999999999999999887421 23459999999873 11222
Q ss_pred HHHHHhCCCCCcc----cc-----CcEEEEecCC----HHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 109 AQLCELSPLAKPK----CS-----DKIFITHCYE----FIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 109 ~~~~~~~~~~~~~----~~-----~~i~~~~~~~----~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
..+.. ..... +. +.+.+..... .....+.+.+.+. ...++++||||+++.+.... .+
T Consensus 90 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~lvviD~l~~~~~~~--~~---- 159 (193)
T PF13481_consen 90 RALLQ---DYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALK-ELYGPDLVVIDPLQSLHDGD--EN---- 159 (193)
T ss_dssp HHHHT---TS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHT-T----SEEEEE-GGGG--S---TT----
T ss_pred HHHhc---ccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHh-hcCCCcEEEEcCHHHHhcCC--CC----
Confidence 22221 11111 11 1222221111 2333333333331 22679999999999987652 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....+.++++.|+++++++|++|++++|.++..
T Consensus 160 ~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~ 192 (193)
T PF13481_consen 160 SNSAVAQLMQELKRLAKEYGVAVILVHHTNKSG 192 (193)
T ss_dssp -HHHHHHHHHHHHHHHHHH--EEEEEEEE----
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 223348899999999999999999999998753
No 59
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=5e-16 Score=138.53 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=140.1
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK 119 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~ 119 (279)
..++|||++.||+++ +|+.+|+++.+.|.||.|||+|+.+++..++. .....|.+|+.|++. .....+++....+..
T Consensus 176 ~~Gi~tgf~~LD~~t-~G~~~~dLii~AaRP~mGKTafalnia~n~a~-~~~~~v~iFSLEM~~-eql~~R~Ls~~s~v~ 252 (435)
T COG0305 176 LIGVPTGFTDLDEIT-SGFRPGDLIIVAARPGMGKTALALNIALNAAA-DGRKPVAIFSLEMSE-EQLVMRLLSSESGIE 252 (435)
T ss_pred CcccccCchhhHHHh-cCCccCCEEEEccCCCCChHHHHHHHHHHHHH-hcCCCeEEEEccCCH-HHHHHHhhccccccc
Confidence 789999999999995 56999999999999999999999999999874 223338999999871 112222222222211
Q ss_pred cc----------------------ccCcEEEEe--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 120 PK----------------------CSDKIFITH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 120 ~~----------------------~~~~i~~~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
.. -...+++.. ..+..++...++++. ...++++++||+++.+...... ..
T Consensus 253 ~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk--~~~~l~~i~iDYLqLm~~~~~~----~~ 326 (435)
T COG0305 253 SSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLK--LKHNLGLIVIDYLQLMTGGKKS----EN 326 (435)
T ss_pred hhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHH--HhcCccEEEEEEEEeecccccc----hh
Confidence 11 112344433 356788888887776 4566999999999976543322 23
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeecccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~~ 237 (279)
+.+.+.++.+.|+.+|++.+++||..+|.++..+.....+|.+ +..+++.++..+++++..-
T Consensus 327 r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~ 393 (435)
T COG0305 327 RKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEA 393 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhh
Confidence 7889999999999999999999999999999998855555544 3457789999999998643
No 60
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.69 E-value=5e-16 Score=132.74 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=106.8
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
..++|||++.||.+|+||+++|++++|+|+||+|||+|+.+++...+ ..|. |+|+++++. ++.+.+...+ +++
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 46799999999999999999999999999999999999999999987 3443 999999986 3333333332 333
Q ss_pred Ccc-cc--CcEEEE---------------ecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHH
Q psy2198 119 KPK-CS--DKIFIT---------------HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDM 180 (279)
Q Consensus 119 ~~~-~~--~~i~~~---------------~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~ 180 (279)
..+ .. ..+.+. .+.+.+.+...+.+.. ...+...+|+|+++.+.... .. . ...
T Consensus 76 d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~--~~~~~~~~ViDsi~~~~~~~-~~-----~-~~~ 146 (260)
T COG0467 76 DLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIV--EKEGADRVVIDSITELTLYL-ND-----P-ALV 146 (260)
T ss_pred CHHHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHH--HHhCCCEEEEeCCchHhhhc-Cc-----h-HHH
Confidence 332 00 111111 1234555666666665 33458999999999653221 11 1 122
Q ss_pred HHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 181 RDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 181 ~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+.+...+.++.++.+++.+++.+......
T Consensus 147 r~~~~~l~~~~~~~~~t~~~~~~~~~~~~ 175 (260)
T COG0467 147 RRILLLLKRFLKKLGVTSLLTTEAPVEER 175 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccCC
Confidence 66778888888888999999988644443
No 61
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.66 E-value=3.4e-15 Score=125.01 Aligned_cols=179 Identities=19% Similarity=0.174 Sum_probs=109.2
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK 119 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~ 119 (279)
...+.++++.||+.++||+++|+++.|.|+||+|||||+.+++...+ .....++|++++... ...+.++ . ..++.
T Consensus 3 ~~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g~~~~yi~~e~~~-~~~~~~~-~-~~g~~ 77 (230)
T PRK08533 3 LAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFL--QNGYSVSYVSTQLTT-TEFIKQM-M-SLGYD 77 (230)
T ss_pred eEEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEeCCCCH-HHHHHHH-H-HhCCc
Confidence 34678999999999999999999999999999999999988888764 233459999988762 2333333 2 12222
Q ss_pred cc---ccCcEEEEec----CCHHHHHHHHHhhhcc-CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy2198 120 PK---CSDKIFITHC----YEFIDLKRTLESQSGF-IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191 (279)
Q Consensus 120 ~~---~~~~i~~~~~----~~~~~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la 191 (279)
.+ ....+.+... ....+....+...... ...++++++||+++.......+ ....+++.+.++.++
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d-------~~~~~~l~~~l~~l~ 150 (230)
T PRK08533 78 INKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS-------EVAVNDLMAFFKRIS 150 (230)
T ss_pred hHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc-------hHHHHHHHHHHHHHH
Confidence 22 1223333221 1122222222222221 3357899999999987532111 122345666677666
Q ss_pred HHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeeccccc
Q psy2198 192 IKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 192 ~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
+ .+++++++++....... . . ...++.+|..+.++.....
T Consensus 151 ~-~g~tvi~t~~~~~~~~~-~-----~-~~~~~~~DgvI~L~~~~~~ 189 (230)
T PRK08533 151 S-LNKVIILTANPKELDES-V-----L-TILRTAATMLIRLEVKVFG 189 (230)
T ss_pred h-CCCEEEEEecccccccc-c-----c-eeEEEeeeEEEEEEEeecC
Confidence 5 47788887765532211 1 1 1346777777777765544
No 62
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.66 E-value=3.4e-15 Score=119.50 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=110.0
Q ss_pred eeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCCCCc
Q psy2198 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPLAKP 120 (279)
Q Consensus 42 ~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~~~~ 120 (279)
-+++|-.+||+-|+||+|-|+++.|.|++|+|||.|+++++.-++ .++ .+.|+++|.+ .+.++.++.++..
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L---~~g~~v~yvsTe~T-----~refi~qm~sl~y 80 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFL---MNGYRVTYVSTELT-----VREFIKQMESLSY 80 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHH---hCCceEEEEEechh-----HHHHHHHHHhcCC
Confidence 489999999999999999999999999999999999999999886 333 3999999977 3444444444433
Q ss_pred c-----ccCcEEEEec------CCHHHHHHHHHhhhcc-CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHH
Q psy2198 121 K-----CSDKIFITHC------YEFIDLKRTLESQSGF-IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLH 188 (279)
Q Consensus 121 ~-----~~~~i~~~~~------~~~~~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 188 (279)
+ ...++.+... .+.......+..+... ...+.++++|||++.+...+ ....+..++..++
T Consensus 81 dv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r 152 (235)
T COG2874 81 DVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLR 152 (235)
T ss_pred CchHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHH
Confidence 3 3344444431 2223333333333322 45677999999999875433 2346778999999
Q ss_pred HHHHHcCcEEEEecccccccCC
Q psy2198 189 ELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 189 ~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+++. .|.+||++.|+..-.++
T Consensus 153 ~l~d-~gKvIilTvhp~~l~e~ 173 (235)
T COG2874 153 KLSD-LGKVIILTVHPSALDED 173 (235)
T ss_pred HHHh-CCCEEEEEeChhhcCHH
Confidence 9997 69999999988776654
No 63
>KOG2859|consensus
Probab=99.57 E-value=4.7e-14 Score=112.77 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=141.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe----EEEEECCCCCCHHHHHHHHHhCCCCC--------------
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYICTESVFPTARLAQLCELSPLAK-------------- 119 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g----vlyi~~e~~~~~~~~~~~~~~~~~~~-------------- 119 (279)
...|.+++|.||.++|||..++++++...+|...|| |+|+|....++..|+.+++.......
T Consensus 35 ~daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~ 114 (293)
T KOG2859|consen 35 ADAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEE 114 (293)
T ss_pred cccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHh
Confidence 347899999999999999999999999999999998 99999999999999988875422111
Q ss_pred --cc----ccCcEEEEecCCHHHHHHHHHhhhcc--CCCCeeEEEEeCcchhhccccccc-h-hhHHHHHHHHHHHHHHH
Q psy2198 120 --PK----CSDKIFITHCYEFIDLKRTLESQSGF--IENKVGMIVIDSIAGIFRNTYAED-K-YVQRAHDMRDLAHYLHE 189 (279)
Q Consensus 120 --~~----~~~~i~~~~~~~~~~l~~~i~~~~~~--~~~~~~lvvID~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~L~~ 189 (279)
.+ +..++.+.+|++..++...+..+... ..+++.++++|++++++|.+.... + .......++.+.+.|++
T Consensus 115 ~~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeK 194 (293)
T KOG2859|consen 115 QLEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEK 194 (293)
T ss_pred HHHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHHHHHHHHHH
Confidence 00 57788999999998888777665543 677899999999999999775543 1 12245567888999999
Q ss_pred HHHHcCcEEEEecccccccC-----C------------CCCccCccccchhhhhhhheeeecccccc
Q psy2198 190 LSIKHRIVVICTNQVTSAMT-----H------------SDKNIPALGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 190 la~~~~~~vi~v~h~~~~~~-----~------------~~~~~~~~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
+++.+-..++.+.+.--.-. . ..++.+..-.+|.+.+..+++++|..+..
T Consensus 195 L~~d~~lv~~aT~~ti~~e~y~~~En~P~~~gRsvCllliky~~~~~k~~qq~v~h~l~~sks~d~q 261 (293)
T KOG2859|consen 195 LCKDAILVGMATVETIFLENYRFGENLPEAGGRSVCLLLIKYHVRMQKIQQQIVLHGLPLSKSNDIQ 261 (293)
T ss_pred HHhhheeeeeeehhHHHHhcccccccCccccccceeeeeccccHHHHHHHHHHHHccCceecccchh
Confidence 99988888877765532211 1 14556667778899999999999877654
No 64
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.56 E-value=1.3e-13 Score=116.29 Aligned_cols=167 Identities=15% Similarity=0.266 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccC----------CCCeEEEEECCCCCC--HHHHHHHHHhCCCCCccccCcEEE
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQ----------PHKGVLYICTESVFP--TARLAQLCELSPLAKPKCSDKIFI 128 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~----------~~~gvlyi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~i~~ 128 (279)
|.+..|+||+|+|||+|+++++..++.+. ..+.|+|+++|+..+ .+|+..+.... +... ..+++++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~-~~~~-~~~rl~~ 78 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL-EPDD-AGDRLFI 78 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc-CCcC-cccceEE
Confidence 67899999999999999999998765321 234499999998743 44555554432 1110 1122222
Q ss_pred E----------ec---CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcC
Q psy2198 129 T----------HC---YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHR 195 (279)
Q Consensus 129 ~----------~~---~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~ 195 (279)
. .. .....+...+... ...+++++|||+++.+.. ....+ ...+..+++.|++++++.+
T Consensus 79 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~---~~~~~~lvviDpl~~~~~--~~~~d----~~~~~~~~~~L~~~a~~~g 149 (239)
T cd01125 79 DSGRIQPISIAREGRIIVVPEFERIIEQL---LIRRIDLVVIDPLVSFHG--VSEND----NGAMDAVIKALRRIAAQTG 149 (239)
T ss_pred eccCCCceecccCCcccccHHHHHHHHHH---HhcCCCEEEECChHHhCC--CCcCC----HHHHHHHHHHHHHHHHHhC
Confidence 1 11 1122332222222 235889999999987632 11111 2345678899999999999
Q ss_pred cEEEEecccccccCCC--CCccCccccchhhhhhhheeeeccccc
Q psy2198 196 IVVICTNQVTSAMTHS--DKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 196 ~~vi~v~h~~~~~~~~--~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
++||+++|..+..... ......|+..+...++..+.+.+....
T Consensus 150 ~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~ 194 (239)
T cd01125 150 AAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRALTRMTSE 194 (239)
T ss_pred CEEEEEeccCcccccCcccccccCcHHHHhcccceEEEEeeCCHH
Confidence 9999999999877542 445566777788888888888875544
No 65
>KOG2373|consensus
Probab=99.50 E-value=3.2e-14 Score=121.22 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=127.7
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe--EEEEECCCCCCHHHHHH-HHHhCCCCCcc-
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG--VLYICTESVFPTARLAQ-LCELSPLAKPK- 121 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g--vlyi~~e~~~~~~~~~~-~~~~~~~~~~~- 121 (279)
.++.|+++| +|.++|+++++.||+|+|||||+...+..+. ..| ++|-+.|.. ..|+.. ++.+..+.+.+
T Consensus 259 RFpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~----~QGVnTLwgSFEi~--n~rla~~mL~Qyagyrl~d 331 (514)
T KOG2373|consen 259 RFPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLF----TQGVNTLWGSFEIP--NKRLAHWMLVQYAGYRLLD 331 (514)
T ss_pred hhhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHH----hhhhhheeeeeecc--hHHHHHHHHHHHccCchHh
Confidence 467899997 6899999999999999999999999888874 334 788777754 444443 34444443322
Q ss_pred ---------------ccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHH
Q psy2198 122 ---------------CSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHY 186 (279)
Q Consensus 122 ---------------~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (279)
.+.-+.+.....++.....+...+ .-+++..||||.++.++....-.. ++.-....++..
T Consensus 332 rl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~--yV~di~HViIDNLQFmmg~~~~~~---Drf~~QD~iig~ 406 (514)
T KOG2373|consen 332 RLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAI--YVEDIQHVIIDNLQFMMGQGMMAL---DRFHLQDRIIGY 406 (514)
T ss_pred hhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHH--HHHhhhhhhhhhHHHHhccchhcc---chhhhHHHHHHH
Confidence 011112333445556666665554 335689999999998775442221 244555778999
Q ss_pred HHHHHHHcCcEEEEecccccccCCC--CCccCccccchhhhhhhheeeeccccccce
Q psy2198 187 LHELSIKHRIVVICTNQVTSAMTHS--DKNIPALGLTYERAHDMRDLAHYLHEISIK 241 (279)
Q Consensus 187 L~~la~~~~~~vi~v~h~~~~~~~~--~~~~~~~g~~~~~~~~~rl~l~k~~~~~~~ 241 (279)
++++|.+++|.|-++-|+++.-++. +.....|+....+-+|..+++...+-.+.+
T Consensus 407 fR~fAT~nn~HvTlVvHPRKed~d~El~t~s~fGsAkatQEADNVliiQdkrl~~~r 463 (514)
T KOG2373|consen 407 FRQFATQNNIHVTLVVHPRKEDGDTELDTQSFFGSAKATQEADNVLIIQDKRLDRDR 463 (514)
T ss_pred HHHHhhccceeEEEEecccccCCCceeeehhhccccccccccccEEEEeeccccccc
Confidence 9999999999999999999987662 334444555667889999998876655433
No 66
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.47 E-value=7e-13 Score=104.58 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCC----HHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYE----FIDLK 138 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~l~ 138 (279)
+++|+|+||+|||+++..++.... ...+.++|++.+....... ... ...... ...++..+..... .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~~~~-~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIEELT-ERL-IGESLK--GALDNLIIVFATADDPAAARLL 74 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchHHHH-HHH-hhhhhc--cccccEEEEEcCCCCCcHHHHH
Confidence 478999999999999999999885 2344599999997743221 111 000000 0223343333222 22222
Q ss_pred HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc
Q psy2198 139 RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL 218 (279)
Q Consensus 139 ~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~ 218 (279)
....... ...+++++|||+++.+......... .....+.+.+..|.+++++.++++|+++|........ ...+.+
T Consensus 75 ~~~~~~~--~~~~~~~lviDe~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~-~~~~~~ 149 (165)
T cd01120 75 SKAERLR--ERGGDDLIILDELTRLVRALREIRE--GYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGD-PRLTRG 149 (165)
T ss_pred HHHHHHH--hCCCCEEEEEEcHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccC-cccccC
Confidence 1222222 5578899999999987654321000 0123455677777777888899999999999877652 222566
Q ss_pred ccchhhhhhhheeeec
Q psy2198 219 GLTYERAHDMRDLAHY 234 (279)
Q Consensus 219 g~~~~~~~~~rl~l~k 234 (279)
+....+.++.++++.+
T Consensus 150 ~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 150 AQNLEDIADTVIVLSR 165 (165)
T ss_pred ccceeeecceEEEEeC
Confidence 7777888888887753
No 67
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.43 E-value=5.3e-12 Score=102.32 Aligned_cols=154 Identities=21% Similarity=0.151 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc---ccCcEEEEecC----CHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK---CSDKIFITHCY----EFI 135 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~----~~~ 135 (279)
++.|.||||+|||+|+.+++...+ .....++|+++|+. .+.+.+.+... ++..+ ....+.+.... +..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~--~~~~~~~~~~~-g~~~~~l~~~g~l~~~d~~~~~~s~~ 75 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEES--PEELIENAESL-GWDLERLEDEGLLAIVDADPDEIGPA 75 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCC--HHHHHHHHHHc-CCChHHHHhcCCeEEEecCccccchh
Confidence 478999999999999999998876 23344999999976 23332222221 33222 11223332221 111
Q ss_pred ------HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 136 ------DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 136 ------~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
++...+.... ...+++++|||+++.+...+ .......+.+.++.+. +.|+++|+++|.....+
T Consensus 76 ~~~~~~~~~~~i~~~~--~~~~~~~lviD~~~~~~~~~--------~~~~~~~i~~l~~~l~-~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 76 ESSLRLELIQRLKDAI--EEFKAKRVVIDSVSGLLLME--------QSTARLEIRRLLFALK-RFGVTTLLTSEQSGLEG 144 (187)
T ss_pred hhhhhHHHHHHHHHHH--HHhCCCEEEEeCcHHHhhcC--------hHHHHHHHHHHHHHHH-HCCCEEEEEeccccCCC
Confidence 2223333332 34578999999999876531 1112233334444444 36999999999887643
Q ss_pred CCCCccCccccchhhhhhhheeeecccc
Q psy2198 210 HSDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 210 ~~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
. ..+...+.+.+|..+.+++...
T Consensus 145 ~-----~~~~~~~~~~aD~ii~l~~~~~ 167 (187)
T cd01124 145 T-----GFGGGDVEYLVDGVIRLRLDEE 167 (187)
T ss_pred c-----ccCcCceeEeeeEEEEEEEEcc
Confidence 1 2234456788888888876643
No 68
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.38 E-value=3.2e-12 Score=108.22 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=114.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--------CCCCeEEEEECCCCCC--HHHHHHHHHhCCCCCccccC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--------QPHKGVLYICTESVFP--TARLAQLCELSPLAKPKCSD 124 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--------~~~~gvlyi~~e~~~~--~~~~~~~~~~~~~~~~~~~~ 124 (279)
.+-+..|-...|+|++|+||||+++.++..++.+ ...|+|+|++.|..-+ .+|+..+.. ..++.+....
T Consensus 83 d~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a-~mgLsPadvr 161 (402)
T COG3598 83 DEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRA-RMGLSPADVR 161 (402)
T ss_pred hHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHH-HcCCChHhhh
Confidence 3446777788888999999999999988776532 2345699999997621 223333333 3455544344
Q ss_pred cEEEEec---------CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcC
Q psy2198 125 KIFITHC---------YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHR 195 (279)
Q Consensus 125 ~i~~~~~---------~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~ 195 (279)
++.+.+. ..+ .+...+.... ....|+++|||++-.++.+. +. ...+++.+++.++++|.+.+
T Consensus 162 n~dltd~~Gaa~~~d~l~p-kl~rRfek~~--~Q~rp~~vViDp~v~f~~G~----s~--s~vqv~~fi~~~rkla~~l~ 232 (402)
T COG3598 162 NMDLTDVSGAADESDVLSP-KLYRRFEKIL--EQKRPDFVVIDPFVAFYEGK----SI--SDVQVKEFIKKTRKLARNLE 232 (402)
T ss_pred heeccccccCCCccccccH-HHHHHHHHHH--HHhCCCeEEEcchhhhcCCc----cc--hhHHHHHHHHHHHHHHHhcC
Confidence 4444111 111 2222222222 44688999999999886543 11 23678999999999999999
Q ss_pred cEEEEecccccccCCCCCccCccccchhhhhhhheeeeccccc
Q psy2198 196 IVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 196 ~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
|+||+++|..+.... +...-+|+..|.....+++.+.-.++.
T Consensus 233 caIiy~hHtskss~~-~ksgrsGs~~dg~~l~~~l~l~~tE~~ 274 (402)
T COG3598 233 CAIIYIHHTSKSSGK-NKSGRSGSVSDGKFLTTPLMLAYTEGK 274 (402)
T ss_pred CeEEEEeccccccCC-CCCCCCCccCccHHHhhHHHHhccccc
Confidence 999999999988765 345555666677777777766654443
No 69
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=7.3e-13 Score=106.57 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=87.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHH------HhCCCCCcc-
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLC------ELSPLAKPK- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~------~~~~~~~~~- 121 (279)
.|+.+ +--+.+|+++.|+||||||||||++.+...- ..+.|.++++++.......+.++. .+++.+.+-
T Consensus 17 VLkgi-~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHl 92 (240)
T COG1126 17 VLKGI-SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHL 92 (240)
T ss_pred EecCc-ceeEcCCCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccc
Confidence 44444 4478999999999999999999999776655 377889999997553332333322 222222222
Q ss_pred -ccCcEEEEe----cCCHHHHHHHHHhhhc---c------------------------CCCCeeEEEEeCcchhhccccc
Q psy2198 122 -CSDKIFITH----CYEFIDLKRTLESQSG---F------------------------IENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 122 -~~~~i~~~~----~~~~~~l~~~i~~~~~---~------------------------~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+++|+.+.. ..+-++..+...++++ + ..-+|+++..|+.++-.+.
T Consensus 93 TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDP--- 169 (240)
T COG1126 93 TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP--- 169 (240)
T ss_pred hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCH---
Confidence 344443321 1111222221111111 0 1137888899998875443
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
..+.++...++++|+ .|.|+++++|-..-.
T Consensus 170 --------Elv~EVL~vm~~LA~-eGmTMivVTHEM~FA 199 (240)
T COG1126 170 --------ELVGEVLDVMKDLAE-EGMTMIIVTHEMGFA 199 (240)
T ss_pred --------HHHHHHHHHHHHHHH-cCCeEEEEechhHHH
Confidence 245677788888887 589999998877644
No 70
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=6.5e-12 Score=103.29 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=93.9
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc---
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPLAKPK--- 121 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~--- 121 (279)
+..|+.+ .--+++|++++|.||||||||||+..+.+... +.+|.+++++.+. ++.+.+..+..+..++-.+
T Consensus 18 ~~~L~~v-~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 18 VEALKDV-NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred eEecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 4456555 55799999999999999999999998887764 6778888877533 4555555555544443322
Q ss_pred ------ccCcEEEE----ecCC--HHHHHHHHHhhhcc-------------------------CCCCeeEEEEeCcchhh
Q psy2198 122 ------CSDKIFIT----HCYE--FIDLKRTLESQSGF-------------------------IENKVGMIVIDSIAGIF 164 (279)
Q Consensus 122 ------~~~~i~~~----~~~~--~~~l~~~i~~~~~~-------------------------~~~~~~lvvID~l~~~~ 164 (279)
+.+|+.+. .... ..+....+.+.+.+ .-.+|++++-|+.+.-.
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL 173 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC
Confidence 33343321 1110 01111111111100 11589999999998743
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 165 RNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+. ..-.+++..|++++++.|.|+|+++|...-..
T Consensus 174 D~-----------~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 174 DS-----------KTAKEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred Ch-----------HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 32 23356888999999999999999999876544
No 71
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.31 E-value=1.5e-12 Score=113.86 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=110.3
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC---CHHHHHHHHHhCCCCCcc-
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF---PTARLAQLCELSPLAKPK- 121 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~---~~~~~~~~~~~~~~~~~~- 121 (279)
+...+|.+ +--+++|+++.+.|||||||||+++.||+... +++|.++++++... +.+|--.++.+.+.+.+-
T Consensus 17 ~~~av~~i-sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 17 DFTAVDDI-SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred CeeEEecc-eeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 46677766 66899999999999999999999999999985 88889999888652 333444444444444333
Q ss_pred -ccCcEEEEec----CCHHHHHHHHHhhhcc---------------------------CCCCeeEEEEeCcchhhccccc
Q psy2198 122 -CSDKIFITHC----YEFIDLKRTLESQSGF---------------------------IENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 122 -~~~~i~~~~~----~~~~~l~~~i~~~~~~---------------------------~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+.+|+-|.-. ..-+++.+.+.+.++. ...+|+++.+|+.-.-.
T Consensus 93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaL----- 167 (352)
T COG3842 93 TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSAL----- 167 (352)
T ss_pred cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccch-----
Confidence 4455444211 2223333333333211 12577788887755432
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeee
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAH 233 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~ 233 (279)
......++...|+++.++.|+|+|+++|.-.+.-. +....+..|.+........++-+
T Consensus 168 ------D~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 168 ------DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred ------hHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 12344567778889999999999999998776543 45555555655544444444433
No 72
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=7.6e-12 Score=104.53 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=127.7
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC------CHHHHHHHHHhCCCCCc
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF------PTARLAQLCELSPLAKP 120 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~------~~~~~~~~~~~~~~~~~ 120 (279)
+.++|.+ +--+.+|++..|+|+|||||||+++.++.... +..|.+|+++.+.. ..+++..++... ++..
T Consensus 26 v~avd~V-sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~V-gl~~ 100 (268)
T COG4608 26 VKAVDGV-SFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDITKLSKEERRERVLELLEKV-GLPE 100 (268)
T ss_pred eEEecce-eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchhhcchhHHHHHHHHHHHHh-CCCH
Confidence 4567776 56899999999999999999999999998874 78888898887531 123344444432 3333
Q ss_pred cccCcEEEEecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEE
Q psy2198 121 KCSDKIFITHCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVI 199 (279)
Q Consensus 121 ~~~~~i~~~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi 199 (279)
+... .+....+-.+... .+...+ .-+|+++|.|++.+..+. +...++.+.|+++.++.+.+.+
T Consensus 101 ~~~~--ryPhelSGGQrQRi~IARAL---al~P~liV~DEpvSaLDv-----------SiqaqIlnLL~dlq~~~~lt~l 164 (268)
T COG4608 101 EFLY--RYPHELSGGQRQRIGIARAL---ALNPKLIVADEPVSALDV-----------SVQAQILNLLKDLQEELGLTYL 164 (268)
T ss_pred HHhh--cCCcccCchhhhhHHHHHHH---hhCCcEEEecCchhhcch-----------hHHHHHHHHHHHHHHHhCCeEE
Confidence 3222 2333444333322 223332 258899999999886432 3346688889999999999999
Q ss_pred EecccccccCC--CCCccCccccchhhhhhhheeeeccccccceeeEEEEe
Q psy2198 200 CTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEISIKHWIVVIC 248 (279)
Q Consensus 200 ~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~~~~~~~~v~~ 248 (279)
+++|.-.-... +....++.|.+++......++-.+.+.........+..
T Consensus 165 FIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 165 FISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred EEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 99999877665 78888999999999988888887777766554544443
No 73
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.30 E-value=4.9e-12 Score=106.02 Aligned_cols=142 Identities=17% Similarity=0.236 Sum_probs=84.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCCC---Ccc--
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPLA---KPK-- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~---~~~-- 121 (279)
.|+.+ .--+++|+++.|.||||||||||++.+++... +..|.+++++... .+.+.+.+.+.-.... ...
T Consensus 17 il~~l-s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 17 ILDDL-SFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred EEecc-eEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 34444 45789999999999999999999999999874 7788999999865 3344444433221111 111
Q ss_pred ccC-----cEEEEe---cCCHHH---HHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 122 CSD-----KIFITH---CYEFID---LKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 ~~~-----~i~~~~---~~~~~~---l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+.+ +..+.. ..+.++ +.+.+.. ... -..+++++++|+.++..+.
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~-~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALEL-LGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHH-hCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence 111 111111 111111 1111111 100 1257788888888875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
....++++.+++++++.|.|+|++.|.-.
T Consensus 172 -----------~~Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 172 -----------AHQIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 22356788888888888888888887654
No 74
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.4e-12 Score=113.48 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=86.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC---CHHHHHHHHHhCCCCCcc--ccCcEEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF---PTARLAQLCELSPLAKPK--CSDKIFIT 129 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~---~~~~~~~~~~~~~~~~~~--~~~~i~~~ 129 (279)
.--+..|++++|.||||||||||++.+|+... +++|-++|+++... +.+|-..+..+.+.+.+- +.+|+.+.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~ 99 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG 99 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhh
Confidence 34689999999999999999999999999884 78889999888552 233333344444444333 44555443
Q ss_pred ec---CCHHHHHHHHHhhhcc---------------------------CCCCeeEEEEeCcchhhccccccchhhHHHHH
Q psy2198 130 HC---YEFIDLKRTLESQSGF---------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHD 179 (279)
Q Consensus 130 ~~---~~~~~l~~~i~~~~~~---------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~ 179 (279)
-. .+-+++...+.+..+. .-.+|+++.+|+.-+-.+ .+.
T Consensus 100 Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLD-----------a~l 168 (338)
T COG3839 100 LKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD-----------AKL 168 (338)
T ss_pred hhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhh-----------HHH
Confidence 21 1223333333332211 114677777777655321 223
Q ss_pred HHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 180 MRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 180 ~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
...+...++++.++.+.|+|+++|...+.
T Consensus 169 R~~mr~ei~~lh~~l~~T~IYVTHDq~EA 197 (338)
T COG3839 169 RVLMRSEIKKLHERLGTTTIYVTHDQVEA 197 (338)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCHHHH
Confidence 34455566667777888888888876554
No 75
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.27 E-value=2.3e-11 Score=105.49 Aligned_cols=149 Identities=17% Similarity=0.287 Sum_probs=92.0
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC-HHHHHHHH---HhCCCCCcc
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP-TARLAQLC---ELSPLAKPK 121 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~-~~~~~~~~---~~~~~~~~~ 121 (279)
+...|+.+ ..-+++|+++++.||||+|||||++.+++... +..|.+.++++.... .....+.+ .+...+.+.
T Consensus 17 ~~~~l~~v-s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~ 92 (293)
T COG1131 17 DKTALDGV-SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPE 92 (293)
T ss_pred CCEEEece-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcc
Confidence 35677776 67899999999999999999999999999885 677888888865532 11122111 111111111
Q ss_pred --ccCcEEEEe-cC--C----HHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 122 --CSDKIFITH-CY--E----FIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 122 --~~~~i~~~~-~~--~----~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
+.+++.+.. .. . .+.+.+.+. ...+ .-.+|+++++|+.+.-.+.
T Consensus 93 lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~-~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp-- 169 (293)
T COG1131 93 LTVRENLEFFARLYGLSKEEAEERIEELLE-LFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP-- 169 (293)
T ss_pred ccHHHHHHHHHHHhCCChhHHHHHHHHHHH-HcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCH--
Confidence 111111100 00 0 000111110 0000 1268999999999875432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
....++.+.|++++++.+.+|++++|...+...
T Consensus 170 ---------~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 170 ---------ESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred ---------HHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 234667888888888777999999999988875
No 76
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.25 E-value=4.6e-12 Score=108.08 Aligned_cols=191 Identities=11% Similarity=0.056 Sum_probs=121.7
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc-
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTESV--FPTARLAQLCELSPLAKPK- 121 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~- 121 (279)
+..+|.+ +-.+.+|++++|+|+||||||++++.+++..-.+ .-.+|-+++++++. ++.++..++.....++-.+
T Consensus 18 v~av~~v-s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 18 VKAVDGV-SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEEece-eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3456655 5579999999999999999999999999876311 11345677777754 3444444554433332222
Q ss_pred --------------ccCcEEEEecC-CHHHHHHHHHhhhc---c---------------------------CCCCeeEEE
Q psy2198 122 --------------CSDKIFITHCY-EFIDLKRTLESQSG---F---------------------------IENKVGMIV 156 (279)
Q Consensus 122 --------------~~~~i~~~~~~-~~~~l~~~i~~~~~---~---------------------------~~~~~~lvv 156 (279)
+.+.+...... +-.+..+...++++ + ...+|+++|
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 00111100000 11111111111110 0 114789999
Q ss_pred EeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeec
Q psy2198 157 IDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHY 234 (279)
Q Consensus 157 ID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k 234 (279)
-|+.+.-.+ .....++++.|+++.+++|.++|+|+|...-... +...+++.|.+++......++-.+
T Consensus 177 ADEPTTALD-----------vt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P 245 (316)
T COG0444 177 ADEPTTALD-----------VTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNP 245 (316)
T ss_pred eCCCcchhh-----------HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCC
Confidence 999887543 2334678889999999999999999999876655 788899999999999998888888
Q ss_pred cccccceeeEEEEec
Q psy2198 235 LHEISIKHWIVVICT 249 (279)
Q Consensus 235 ~~~~~~~~~~~v~~~ 249 (279)
.+.........+...
T Consensus 246 ~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 246 KHPYTRGLLNSLPRL 260 (316)
T ss_pred CChHHHHHHHhCccc
Confidence 877765544444333
No 77
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.25 E-value=1.9e-11 Score=100.27 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=96.7
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHH------HHhCC--CCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQL------CELSP--LAK 119 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~------~~~~~--~~~ 119 (279)
..|+.+ .--+.+|+..+|+|++|||||||++.+++... ++.|.+++++.......+.... +.+.+ ++.
T Consensus 21 ~~l~~V-S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 21 HALNNV-SLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhcce-eEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 345554 44789999999999999999999999998874 6778888888654332221111 11100 011
Q ss_pred cc------ccCcEEE---------------------------EecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhc
Q psy2198 120 PK------CSDKIFI---------------------------THCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFR 165 (279)
Q Consensus 120 ~~------~~~~i~~---------------------------~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~ 165 (279)
+. ..+.+.. ....+-.+... .+.+. ...+|+++|.|+.++..+
T Consensus 97 P~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA---L~~~PklLIlDEptSaLD 173 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA---LIPEPKLLILDEPTSALD 173 (252)
T ss_pred cchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH---hccCCCEEEecCchhhhc
Confidence 10 1111111 01111111111 11111 225899999999988643
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhh
Q psy2198 166 NTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHD 227 (279)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~ 227 (279)
. ....++.+.|.++.++++.|+|+++|..+-... +....+.-|.+.+..+.
T Consensus 174 ~-----------siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 174 V-----------SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred H-----------HHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 2 334668889999999999999999998876653 34444444444443333
No 78
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.24 E-value=1.4e-10 Score=89.80 Aligned_cols=149 Identities=16% Similarity=0.287 Sum_probs=94.5
Q ss_pred ccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHH---HhCCCC
Q psy2198 44 STGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLC---ELSPLA 118 (279)
Q Consensus 44 ~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~---~~~~~~ 118 (279)
.++-+.||.+ +-.+.+|+.++|+||+|||||||++.+|.... +..|.+|+.++.. ..++.+++-+ .+...+
T Consensus 13 a~~a~il~~i-sl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 13 AGDAKILNNI-SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred cCCCeeecce-eeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 3455566665 55789999999999999999999999998874 7788999999865 3444444332 333333
Q ss_pred Ccc-ccCcEEEEe-----cCCHHHHHHHHHhhh---------------------c---cCCCCeeEEEEeCcchhhcccc
Q psy2198 119 KPK-CSDKIFITH-----CYEFIDLKRTLESQS---------------------G---FIENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 119 ~~~-~~~~i~~~~-----~~~~~~l~~~i~~~~---------------------~---~~~~~~~lvvID~l~~~~~~~~ 168 (279)
..+ +.+|+.+.. ..+.......+.+.. . .....|+++.+|++++-.+..
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~- 167 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES- 167 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChh-
Confidence 333 556665531 112121121111100 0 022589999999999864321
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
.. +.+-..+.++..+.+++++-++|....
T Consensus 168 -------nk---r~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 168 -------NK---RNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred -------hH---HHHHHHHHHHhhhhceEEEEEecChHH
Confidence 11 234445566666899999999998765
No 79
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.1e-11 Score=104.56 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=91.1
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc----
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK---- 121 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~---- 121 (279)
.++.+|.+ .--++.|+++++.|||||||||+++.||+... ++.|.+++.++..++...+.. .....++-.+
T Consensus 14 ~~~a~~di-~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~-~~R~VGfvFQ~YAL 88 (345)
T COG1118 14 AFGALDDI-SLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV-RDRKVGFVFQHYAL 88 (345)
T ss_pred cccccccc-eeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch-hhcceeEEEechhh
Confidence 34455544 45788999999999999999999999999885 788888888884444333111 1112222211
Q ss_pred -----ccCcEEEEe-----cCCHHHHHHHHHhhhcc---------------------------CCCCeeEEEEeCcchhh
Q psy2198 122 -----CSDKIFITH-----CYEFIDLKRTLESQSGF---------------------------IENKVGMIVIDSIAGIF 164 (279)
Q Consensus 122 -----~~~~i~~~~-----~~~~~~l~~~i~~~~~~---------------------------~~~~~~lvvID~l~~~~ 164 (279)
+.+|+-|-- ..+..++...+.+++.. ..-.|+++.+|+...-+
T Consensus 89 F~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~AL 168 (345)
T COG1118 89 FPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168 (345)
T ss_pred cccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence 334443321 11222222222222210 12467888888866533
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 165 RNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+ .....++-+.|+++..+.++++++++|...+..
T Consensus 169 D-----------a~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~ 202 (345)
T COG1118 169 D-----------AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202 (345)
T ss_pred h-----------HHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH
Confidence 2 234566777788888888999999999877654
No 80
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.23 E-value=2.8e-11 Score=100.60 Aligned_cols=142 Identities=14% Similarity=0.152 Sum_probs=91.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHH--HHHHH---HHhCCCCCcc--ccCcEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTA--RLAQL---CELSPLAKPK--CSDKIF 127 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~--~~~~~---~~~~~~~~~~--~~~~i~ 127 (279)
+--+|+|+++++.|+||+||||++..+.+... +.+|.+-+.+..+++.. ..+++ +.+..++-|+ ..+.+.
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~ 120 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLE 120 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHH
Confidence 45799999999999999999999999999886 77888888888887522 12222 3333333333 111110
Q ss_pred EEe---cCCHHHHHHHHH---hhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 128 ITH---CYEFIDLKRTLE---SQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 128 ~~~---~~~~~~l~~~i~---~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
+.. ..+..++.+.+. +++.+ --++|+++++|+.+.-.+.
T Consensus 121 v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV----------- 189 (325)
T COG4586 121 VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV----------- 189 (325)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch-----------
Confidence 000 001111111111 11100 2379999999999864321
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.....+.+.|+++..++++||++++|...+...
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~ 222 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIAT 222 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHH
Confidence 223557788999999999999999999998875
No 81
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.20 E-value=4.6e-11 Score=106.72 Aligned_cols=155 Identities=14% Similarity=0.226 Sum_probs=104.8
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC-C-CHHHHHH----HH
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV-F-PTARLAQ----LC 112 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~-~-~~~~~~~----~~ 112 (279)
..+.++ |+..+|.+ +-.+++|++.+|.|+||+|||||+..+.+.+. ++.|-+|+++... + ++....+ +.
T Consensus 10 itK~f~-~~~And~V-~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~dA~~~GIGMV 84 (501)
T COG3845 10 ITKRFP-GVVANDDV-SLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPRDAIRLGIGMV 84 (501)
T ss_pred cEEEcC-CEEecCce-eeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHHHHHHcCCcEE
Confidence 345566 88888888 77899999999999999999999999999985 7888999988854 2 1211111 12
Q ss_pred HhCCCCCcc--ccCcEEEEecC------CHHHHHHHHHhhhc---c------------------------CCCCeeEEEE
Q psy2198 113 ELSPLAKPK--CSDKIFITHCY------EFIDLKRTLESQSG---F------------------------IENKVGMIVI 157 (279)
Q Consensus 113 ~~~~~~~~~--~~~~i~~~~~~------~~~~l~~~i~~~~~---~------------------------~~~~~~lvvI 157 (279)
.|++.+.+. +.+|+.+..+. +..+..+.+.++.. + ...+++++|+
T Consensus 85 hQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLIL 164 (501)
T COG3845 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLIL 164 (501)
T ss_pred eeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEE
Confidence 223333222 45555544322 22233332222211 0 1258999999
Q ss_pred eCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 158 DSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 158 D~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
|+.+++... +.+.++++.|+++++ .|.+||+++|--++...
T Consensus 165 DEPTaVLTP-----------~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 165 DEPTAVLTP-----------QEADELFEILRRLAA-EGKTIIFITHKLKEVMA 205 (501)
T ss_pred cCCcccCCH-----------HHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHH
Confidence 999997643 356778889998886 69999999998777654
No 82
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=3.1e-11 Score=102.17 Aligned_cols=177 Identities=14% Similarity=0.196 Sum_probs=116.8
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH------hCCC
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE------LSPL 117 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~------~~~~ 117 (279)
.+..||.+ +--+++|++++|+|.||+|||||++.+-..- .++.|.+++++.+. ++...+++..+ +.+.
T Consensus 18 ~~~al~~v-sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le---~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 18 TVTALDDV-SLEIPKGEIFGIIGYSGAGKSTLLRLINLLE---RPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred ceeeeccc-eEEEcCCcEEEEEcCCCCcHHHHHHHHhccC---CCCCceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 46677776 6689999999999999999999999666554 37777888888654 34444443322 2222
Q ss_pred CCcc--ccCcEEEEec---CCHHHHHHHHHhhhcc---------------------------CCCCeeEEEEeCcchhhc
Q psy2198 118 AKPK--CSDKIFITHC---YEFIDLKRTLESQSGF---------------------------IENKVGMIVIDSIAGIFR 165 (279)
Q Consensus 118 ~~~~--~~~~i~~~~~---~~~~~l~~~i~~~~~~---------------------------~~~~~~lvvID~l~~~~~ 165 (279)
+-.. +.+|+.++-. .+-.++.+.+.+++++ ....|++++.|+.++-.+
T Consensus 94 LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALD 173 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCC
Confidence 2221 4455544321 2233444333333321 115899999999887543
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecccc
Q psy2198 166 NTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
. ..-..++..|+++.++.|.||++++|-..-... +.......|.+++...-..+|..+.+.
T Consensus 174 P-----------~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~ 236 (339)
T COG1135 174 P-----------ETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236 (339)
T ss_pred h-----------HHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchH
Confidence 2 234668899999999999999999999877765 566666677777766666666655443
No 83
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.17 E-value=3.6e-10 Score=89.71 Aligned_cols=125 Identities=13% Similarity=0.210 Sum_probs=79.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCH
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEF 134 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (279)
.--+++|+++.|.|++|+|||||+..+++... +..|.+++++....... .... ....+.+....+.
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~-~~~~----------~~~~i~~~~qLS~ 85 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFAS-PRDA----------RRAGIAMVYQLSV 85 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCC-HHHH----------HhcCeEEEEecCH
Confidence 34689999999999999999999999998763 66777777775431100 0011 0112333333554
Q ss_pred HHHHHH-HHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 135 IDLKRT-LESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 135 ~~l~~~-i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.+.... +... .-.+++++++|+.+.-.+. .....+.+.|+++++ .+.++|+++|.....
T Consensus 86 G~~qrl~lara---l~~~p~illlDEP~~~LD~-----------~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~ 145 (163)
T cd03216 86 GERQMVEIARA---LARNARLLILDEPTAALTP-----------AEVERLFKVIRRLRA-QGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHHHHHHHH---HhcCCCEEEEECCCcCCCH-----------HHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH
Confidence 443332 2222 2258899999999875432 223456677777764 489999999987654
No 84
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.16 E-value=4.1e-11 Score=98.74 Aligned_cols=170 Identities=14% Similarity=0.160 Sum_probs=103.5
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHH---HHhCCCCCc
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQL---CELSPLAKP 120 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~---~~~~~~~~~ 120 (279)
+-..+|.+ +--+++|+++.+.|||||||||++..+-..+- +..|.+++++++.. +...+++- .-++.++.+
T Consensus 13 ~~~av~~v-~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFP 88 (309)
T COG1125 13 NKKAVDDV-NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88 (309)
T ss_pred Cceeeeee-eEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCC
Confidence 44455655 55799999999999999999999998888774 77789999999763 33333332 223444443
Q ss_pred c--ccCcEEEEe---cCCHHHHHHHHHhhhcc-----------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 121 K--CSDKIFITH---CYEFIDLKRTLESQSGF-----------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 121 ~--~~~~i~~~~---~~~~~~l~~~i~~~~~~-----------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
- +.+|+.+.. ..+-+.+.+...+++.+ ...+|.++..|+.-...+.
T Consensus 89 h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDp 168 (309)
T COG1125 89 HLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168 (309)
T ss_pred CccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccCh
Confidence 3 455554432 12333444333333311 1136777777765432211
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhhe
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRD 230 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl 230 (279)
-...++-..++++.++.+.|+|+++|...+.-. +.......|.+........+
T Consensus 169 -----------I~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 169 -----------ITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred -----------hhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 112345566777778899999999999877543 44444455665544444333
No 85
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.3e-10 Score=91.27 Aligned_cols=151 Identities=16% Similarity=0.232 Sum_probs=88.7
Q ss_pred ccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC-CHHHHHHHHHh---CCCCC
Q psy2198 44 STGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF-PTARLAQLCEL---SPLAK 119 (279)
Q Consensus 44 ~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~-~~~~~~~~~~~---~~~~~ 119 (279)
++-...++.+ .--...|++++|.|+||+||||+++.++..+. ++.|++++++.+.. ++..+.+-+.- ..++.
T Consensus 12 ~~~v~AvrdV-SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY 87 (245)
T COG4555 12 GSKVQAVRDV-SFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87 (245)
T ss_pred cCHHhhhhhe-eEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHhhhcceecCCcChh
Confidence 3334456665 55788999999999999999999999999885 78889999988763 12222221111 11111
Q ss_pred cc--ccCcEEEEec---CC-------HHHHHHH------HHhhhc-c-------------CCCCeeEEEEeCcchhhccc
Q psy2198 120 PK--CSDKIFITHC---YE-------FIDLKRT------LESQSG-F-------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 120 ~~--~~~~i~~~~~---~~-------~~~l~~~------i~~~~~-~-------------~~~~~~lvvID~l~~~~~~~ 167 (279)
.. ..+++.+... .+ .+++.+. +.+... + .-++|+++++|+.+.-.+-.
T Consensus 88 ~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 88 ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167 (245)
T ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHH
Confidence 11 1222211100 00 1111111 111000 0 12789999999988743321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
....+.+++..++ +.|.+||+.+|...+.+.
T Consensus 168 --------~~r~~~dfi~q~k----~egr~viFSSH~m~Evea 198 (245)
T COG4555 168 --------TRRKFHDFIKQLK----NEGRAVIFSSHIMQEVEA 198 (245)
T ss_pred --------HHHHHHHHHHHhh----cCCcEEEEecccHHHHHH
Confidence 2234555666665 469999999999988763
No 86
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=4.5e-11 Score=99.79 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=85.2
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHH--HHHHHHHhCCCCCcc----
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTA--RLAQLCELSPLAKPK---- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~--~~~~~~~~~~~~~~~---- 121 (279)
+.|+.+ .--+++|+++.|+||||+|||||++.+++.+. +..|.+++.+....... ....++.|...+++.
T Consensus 18 ~vl~~i-~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~t 93 (254)
T COG1121 18 PVLEDI-SLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPIT 93 (254)
T ss_pred eeeecc-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccCCeEEEcCcccccCCCCCcC
Confidence 355555 55799999999999999999999999999774 66777777665321110 011111222222222
Q ss_pred ccC--------cEEEEe---cCCHHHHHHHHHhhh--cc---------------------CCCCeeEEEEeCcchhhccc
Q psy2198 122 CSD--------KIFITH---CYEFIDLKRTLESQS--GF---------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 122 ~~~--------~i~~~~---~~~~~~l~~~i~~~~--~~---------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
+.+ +.-... ..+.+.+.+.+...- .+ ...+++++++|+...-.+.
T Consensus 94 V~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~- 172 (254)
T COG1121 94 VKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV- 172 (254)
T ss_pred HHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCH-
Confidence 111 000001 111122222221110 00 2268999999998874321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|+++.++ |+||++++|.-....
T Consensus 173 ----------~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~ 203 (254)
T COG1121 173 ----------AGQKEIYDLLKELRQE-GKTVLMVTHDLGLVM 203 (254)
T ss_pred ----------HHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhH
Confidence 2335678888888887 999999999876553
No 87
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.14 E-value=1e-10 Score=91.80 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=82.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC---CCHHHHHHHHHhCCCCCcc--ccCcEEEEe
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV---FPTARLAQLCELSPLAKPK--CSDKIFITH 130 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~---~~~~~~~~~~~~~~~~~~~--~~~~i~~~~ 130 (279)
--++.|++++|.||+|+|||||+..+++... +..|.+++.+++. .+.+|.-.++.+...+..- +.+|+-+-.
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 3589999999999999999999999999986 7788899988865 3455555555433222211 222322211
Q ss_pred cC----CHH-----------------------------HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 131 CY----EFI-----------------------------DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 131 ~~----~~~-----------------------------~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
.. +.+ .-...+.+.. - ..--++.+|+.-+..+.
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARcl--v-R~~PilLLDEPFsALdP----------- 162 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCL--V-REQPILLLDEPFSALDP----------- 162 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHH--h-ccCCeEEecCchhhcCH-----------
Confidence 00 000 0001111110 1 22345556665443221
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....++...+.+++.|.+.|+++++|...+..
T Consensus 163 ~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~ 194 (231)
T COG3840 163 ALRAEMLALVSQLCDERKMTLLMVTHHPEDAA 194 (231)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 12345667778888999999999999887764
No 88
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.14 E-value=2.4e-11 Score=110.99 Aligned_cols=178 Identities=12% Similarity=0.158 Sum_probs=111.0
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC-CCHHHHHHHH------HhC--CC
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV-FPTARLAQLC------ELS--PL 117 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~-~~~~~~~~~~------~~~--~~ 117 (279)
+..+|.+ +--+.+|++++|+|+|||||||+++.+++... +.+|.+.+++.+. ........+. .+. .+
T Consensus 304 ~~Av~~V-Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 304 VKAVDDV-SFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred eeeeeee-eeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 3455555 45789999999999999999999999998874 6777777777651 1111111111 111 11
Q ss_pred CCcc------ccCcEEEEecCCHHHHHHHHHhhhc---c-------------------------CCCCeeEEEEeCcchh
Q psy2198 118 AKPK------CSDKIFITHCYEFIDLKRTLESQSG---F-------------------------IENKVGMIVIDSIAGI 163 (279)
Q Consensus 118 ~~~~------~~~~i~~~~~~~~~~l~~~i~~~~~---~-------------------------~~~~~~lvvID~l~~~ 163 (279)
+++. ..+.+.+.......+..+.+.+++. + ...+|+++|.|+..+.
T Consensus 380 LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~Sa 459 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSA 459 (539)
T ss_pred cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccc
Confidence 1111 1122222221111121111211110 0 1148999999998875
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecccccc
Q psy2198 164 FRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
.+ .....++++.|+++.++.|.|.|+|+|...-... +....+..|.+++..+...++-...+...
T Consensus 460 LD-----------vsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Yt 526 (539)
T COG1123 460 LD-----------VSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYT 526 (539)
T ss_pred cC-----------HHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHH
Confidence 43 2345678999999999999999999999887765 67778888888887766666555554443
No 89
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.14 E-value=2.1e-10 Score=93.88 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=92.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHh------CCCCCc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCEL------SPLAKP 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~------~~~~~~ 120 (279)
.||.+ .--+++|++++|.||||+|||||++.+.+... +..|.+++++++. .+.++...+..+ +..+..
T Consensus 23 Ild~v-~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFs 98 (263)
T COG1127 23 ILDGV-DLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS 98 (263)
T ss_pred EecCc-eeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccc
Confidence 34444 45789999999999999999999999999885 7888899998875 344444444322 111111
Q ss_pred c--ccCcEEEEe----cCCHHHHHHHHHhhhc---c-------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 121 K--CSDKIFITH----CYEFIDLKRTLESQSG---F-------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 121 ~--~~~~i~~~~----~~~~~~l~~~i~~~~~---~-------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+ +.+|+.+.- ..+-..+.+.....++ + ..-+|++++.|+.++-.+.
T Consensus 99 sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDP 178 (263)
T COG1127 99 SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178 (263)
T ss_pred ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCc
Confidence 1 556665531 1222222222211110 0 1247899999999875332
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
- . ...+.+.++++.++.+.|+++++|.......
T Consensus 179 I--------~---a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~ 211 (263)
T COG1127 179 I--------S---AGVIDELIRELNDALGLTVIMVTHDLDSLLT 211 (263)
T ss_pred c--------h---HHHHHHHHHHHHHhhCCEEEEEECChHHHHh
Confidence 1 1 2345566666777799999999998877654
No 90
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=3.3e-10 Score=91.22 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=80.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC----HHHHHHHHH---hCCCCCc--cccCc
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP----TARLAQLCE---LSPLAKP--KCSDK 125 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~----~~~~~~~~~---~~~~~~~--~~~~~ 125 (279)
.--+++|+++.|.|+||+|||||+..+++... +..|.+++++..... .....+.+. +...+.. .+.++
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 96 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN 96 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHh
Confidence 44689999999999999999999999998763 566777776653211 111111110 0000000 01222
Q ss_pred EEEEecCCHHHHHH--HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecc
Q psy2198 126 IFITHCYEFIDLKR--TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQ 203 (279)
Q Consensus 126 i~~~~~~~~~~l~~--~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h 203 (279)
+.+. .+..+... ..+.+ ..+++++++|+.+.-.+. .....+.+.|++++++.+.++|+++|
T Consensus 97 l~~~--lS~G~~qr~~la~al----~~~p~llilDEP~~~LD~-----------~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 97 IALG--LSGGQQQRVALARAL----AMDPDVLLLDEPTSALDP-----------ITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred eeec--CCHHHHHHHHHHHHH----HCCCCEEEEeCCcccCCH-----------HHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 2221 33222222 22222 258899999999875432 22345777777777766899999999
Q ss_pred cccccC
Q psy2198 204 VTSAMT 209 (279)
Q Consensus 204 ~~~~~~ 209 (279)
......
T Consensus 160 ~~~~~~ 165 (178)
T cd03229 160 DLDEAA 165 (178)
T ss_pred CHHHHH
Confidence 876543
No 91
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.13 E-value=1.6e-11 Score=100.71 Aligned_cols=163 Identities=16% Similarity=0.245 Sum_probs=99.7
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHH-HHh---CCCCC
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQL-CEL---SPLAK 119 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~-~~~---~~~~~ 119 (279)
|+..+|.+ +-.+.+|++++|+||||+||||+...+.+.+. ++.|.+++.+++. .++.++.++ +.. ...+.
T Consensus 16 Gl~Al~~V-sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 16 GLTAVNDV-SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CEEEEece-eEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 45566665 55799999999999999999999999999985 7888888888854 222222211 000 01111
Q ss_pred cc--ccCcEEEEec---------------CCHHHHHHHHHhhhcc---------------------------CCCCeeEE
Q psy2198 120 PK--CSDKIFITHC---------------YEFIDLKRTLESQSGF---------------------------IENKVGMI 155 (279)
Q Consensus 120 ~~--~~~~i~~~~~---------------~~~~~l~~~i~~~~~~---------------------------~~~~~~lv 155 (279)
+. +++|+.+... ....+..+...+.++. ..-+|+++
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lL 171 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLL 171 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEE
Confidence 11 2233222100 0112222222211110 12589999
Q ss_pred EEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchh
Q psy2198 156 VIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYE 223 (279)
Q Consensus 156 vID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~ 223 (279)
++|+..+-.+. ....++...++++.++.++||++|.|..+-.-. +.......|.+++
T Consensus 172 LLDEPaAGln~-----------~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 172 LLDEPAAGLNP-----------EETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred EecCccCCCCH-----------HHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999885432 345678888888888889999999999887654 3444444454443
No 92
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.12 E-value=9.9e-11 Score=94.14 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=107.1
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCeEEEEECCCCCC----HHHHHHHH---HhCCC
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ--PHKGVLYICTESVFP----TARLAQLC---ELSPL 117 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--~~~gvlyi~~e~~~~----~~~~~~~~---~~~~~ 117 (279)
...|..+ ...+++++++++.||+|||||||++.+-...-+-+ .-.|-+++++++.++ ...+++-+ .+.+.
T Consensus 20 ~~aL~~i-~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 20 KHALKDI-NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred hhhhccC-ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3455555 56899999999999999999999998876653211 112466667776543 22333222 22211
Q ss_pred -CCccccCcEEEEe----cCCHHHHHHHHHhh-------------hcc------------------CCCCeeEEEEeCcc
Q psy2198 118 -AKPKCSDKIFITH----CYEFIDLKRTLESQ-------------SGF------------------IENKVGMIVIDSIA 161 (279)
Q Consensus 118 -~~~~~~~~i~~~~----~~~~~~l~~~i~~~-------------~~~------------------~~~~~~lvvID~l~ 161 (279)
+...+.+|+.+.. ..+ .++.+.+... +.. ..-.|+++..|+.+
T Consensus 99 PFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 99 PFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 1111333333211 111 1111111111 100 22579999999998
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecccccc
Q psy2198 162 GIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
+..+.- ....+.+++..|+ .+-||++++|......- +...-...|..++...+..+|..+.+...
T Consensus 178 SALDPI--------sT~kIEeLi~eLk-----~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~~~T 244 (253)
T COG1117 178 SALDPI--------STLKIEELITELK-----KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKHKRT 244 (253)
T ss_pred cccCch--------hHHHHHHHHHHHH-----hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccHHHH
Confidence 865432 3456677777777 68999999998876653 33444456888888888888887776655
Q ss_pred ce
Q psy2198 240 IK 241 (279)
Q Consensus 240 ~~ 241 (279)
..
T Consensus 245 ed 246 (253)
T COG1117 245 ED 246 (253)
T ss_pred HH
Confidence 43
No 93
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=6.9e-10 Score=88.27 Aligned_cols=139 Identities=15% Similarity=0.190 Sum_probs=83.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHH---HHHhCCCCCcc-------c
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQ---LCELSPLAKPK-------C 122 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~---~~~~~~~~~~~-------~ 122 (279)
+--+|+|.++.|.||+|+|||||+-.++.... .+.|.+|+++.+. .+.+.+.+ ++.+...+... .
T Consensus 21 sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~ 97 (252)
T COG4604 21 SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVG 97 (252)
T ss_pred eeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhh
Confidence 34689999999999999999999988877764 6778999988765 23333333 33332222221 1
Q ss_pred cCcEEEEecC-C---HHHHHHHHH-------------hh---------hcc-CCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 123 SDKIFITHCY-E---FIDLKRTLE-------------SQ---------SGF-IENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 123 ~~~i~~~~~~-~---~~~l~~~i~-------------~~---------~~~-~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
..++.+.... + ...+.+.+. ++ +++ ...+.+.|++|+.-.-.
T Consensus 98 FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNL----------- 166 (252)
T COG4604 98 FGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL----------- 166 (252)
T ss_pred cCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCccccc-----------
Confidence 2222332211 1 111111111 00 000 22466777777654311
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
....-.++++.|++++++.|.|++++-|.-.-
T Consensus 167 DmkHsv~iMk~Lrrla~el~KtiviVlHDINf 198 (252)
T COG4604 167 DMKHSVQIMKILRRLADELGKTIVVVLHDINF 198 (252)
T ss_pred chHHHHHHHHHHHHHHHHhCCeEEEEEecccH
Confidence 12344679999999999999999999876543
No 94
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=7.7e-11 Score=96.18 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=51.1
Q ss_pred ceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHH
Q psy2198 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQL 111 (279)
Q Consensus 41 ~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~ 111 (279)
..+|.|-..|+.+ .--+++||+++|+|++|+|||||++.+.+.. .+..|.+++.+++. ...+.++++
T Consensus 11 k~yp~~~~aL~~V-nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~---d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 11 KTYPGGHQALKDV-NLEINQGEMVAIIGPSGAGKSTLLRSLNGLV---DPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred eecCCCceeeeeE-eEEeCCCcEEEEECCCCCcHHHHHHHHhccc---CCCcceEEecccchhccchHHHHHH
Confidence 3456777888887 6689999999999999999999999999855 35666778877654 333344444
No 95
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=3.7e-10 Score=90.51 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=78.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEec---
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHC--- 131 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--- 131 (279)
.--+.+|++++|+|+||+|||||+..+++... +..|.++++++...... ..+ ....++- .+...+...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~--~~~-~~~i~~~---~q~~~~~~~~tv 90 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP--EEV-KRRIGYL---PEEPSLYENLTV 90 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch--Hhh-hccEEEE---ecCCccccCCcH
Confidence 44689999999999999999999999998763 56677777775431111 111 1111111 111111111
Q ss_pred -----CCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 132 -----YEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 132 -----~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
.+..+... .+... ...+++++++|+.+...+. .....+.+.|++++++ +.++|+++|..
T Consensus 91 ~~~~~LS~G~~qrv~lara---l~~~p~illlDEPt~~LD~-----------~~~~~l~~~l~~~~~~-g~tiii~th~~ 155 (173)
T cd03230 91 RENLKLSGGMKQRLALAQA---LLHDPELLILDEPTSGLDP-----------ESRREFWELLRELKKE-GKTILLSSHIL 155 (173)
T ss_pred HHHhhcCHHHHHHHHHHHH---HHcCCCEEEEeCCccCCCH-----------HHHHHHHHHHHHHHHC-CCEEEEECCCH
Confidence 22222111 11221 2358899999999985432 2335677778888765 89999999987
Q ss_pred ccc
Q psy2198 206 SAM 208 (279)
Q Consensus 206 ~~~ 208 (279)
...
T Consensus 156 ~~~ 158 (173)
T cd03230 156 EEA 158 (173)
T ss_pred HHH
Confidence 644
No 96
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.09 E-value=3.4e-10 Score=90.72 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCccccCcEEEEec-
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPKCSDKIFITHC- 131 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 131 (279)
.--+++|++++|.|++|+|||||++.+++... +..|.++++++... +...+.+ ..++.. ++..+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~----~i~~~~---q~~~~~~~t 91 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGD----HVGYLP---QDDELFSGS 91 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHh----heEEEC---CCCccccCc
Confidence 34688999999999999999999999998763 56677777765431 2222111 111111 11111110
Q ss_pred -----CCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 132 -----YEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 132 -----~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
.+..+... .+... ...+++++++|+.+...+. .....+.+.|+++.+ .+.++|+++|..
T Consensus 92 v~~~lLS~G~~qrv~la~a---l~~~p~~lllDEPt~~LD~-----------~~~~~l~~~l~~~~~-~~~tii~~sh~~ 156 (173)
T cd03246 92 IAENILSGGQRQRLGLARA---LYGNPRILVLDEPNSHLDV-----------EGERALNQAIAALKA-AGATRIVIAHRP 156 (173)
T ss_pred HHHHCcCHHHHHHHHHHHH---HhcCCCEEEEECCccccCH-----------HHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 22222211 11111 2358899999999875432 123456677777764 589999999976
Q ss_pred ccc
Q psy2198 206 SAM 208 (279)
Q Consensus 206 ~~~ 208 (279)
...
T Consensus 157 ~~~ 159 (173)
T cd03246 157 ETL 159 (173)
T ss_pred HHH
Confidence 543
No 97
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=4.3e-11 Score=98.82 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=86.9
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC-CHHHHHHHHHhCCCCCcc-ccC
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF-PTARLAQLCELSPLAKPK-CSD 124 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~-~~~~~~~~~~~~~~~~~~-~~~ 124 (279)
...|+.+ +--+.+|+++.|.||||||||||++.+++... +..|.+.+++.... +...+.-+.++..-++|. +.+
T Consensus 16 ~~vl~~i-~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~ 91 (248)
T COG1116 16 VEVLEDI-NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLD 91 (248)
T ss_pred eEEeccc-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCEEEEeccCcccchhhHHh
Confidence 4455554 45789999999999999999999999999885 67777777776421 111111111111222222 444
Q ss_pred cEEEEecC---CHHHHHHHHHhhhc---c------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 125 KIFITHCY---EFIDLKRTLESQSG---F------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 125 ~i~~~~~~---~~~~l~~~i~~~~~---~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
|+.+.-.. +..+-.+.+.+.++ + ...+|+++.+|+.-.-.+
T Consensus 92 NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD--------- 162 (248)
T COG1116 92 NVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD--------- 162 (248)
T ss_pred hheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh---------
Confidence 44443211 11111111111110 0 125889999998655332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
......+-..|.++.++.+.||++|+|.-.+.
T Consensus 163 --alTR~~lq~~l~~lw~~~~~TvllVTHdi~EA 194 (248)
T COG1116 163 --ALTREELQDELLRLWEETRKTVLLVTHDVDEA 194 (248)
T ss_pred --HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 22334566777788888999999999987765
No 98
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.08 E-value=2.1e-10 Score=96.20 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=77.4
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCc--cccCcEEEE-----
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKP--KCSDKIFIT----- 129 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~----- 129 (279)
-+.+|++++|+|+||+|||||++.+++... +..|.++++++..........++.+...+.. .+.+++.+.
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~ 83 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVL 83 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcc
Confidence 478999999999999999999999998763 5566666665432110000111111111111 011111110
Q ss_pred ecCCHHH----HHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHHHHHH
Q psy2198 130 HCYEFID----LKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMR 181 (279)
Q Consensus 130 ~~~~~~~----l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~ 181 (279)
...+..+ +.+.+.. ..+ ...+++++++|+.+.-.+. ....
T Consensus 84 ~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~-----------~~~~ 151 (230)
T TIGR01184 84 PDLSKSERRAIVEEHIAL-VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-----------LTRG 151 (230)
T ss_pred cCCCHHHHHHHHHHHHHH-cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH-----------HHHH
Confidence 0011111 1111110 000 1258999999999875432 2335
Q ss_pred HHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 182 DLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 182 ~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.+.+.|++++++.+.+||+++|.....
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~~~ 178 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEA 178 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 677788888877799999999987654
No 99
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.08 E-value=3.6e-10 Score=89.30 Aligned_cols=153 Identities=13% Similarity=0.169 Sum_probs=94.2
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPL 117 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~ 117 (279)
...++.|-+.|+.+ +--+++|+++-++||||+|||||++.++.... +..|.+++.+.+.. ..+.+. ++.++.+
T Consensus 8 ~k~Y~~g~~aL~~v-s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~iP-~LRR~IG 82 (223)
T COG2884 8 SKAYPGGREALRDV-SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREIP-FLRRQIG 82 (223)
T ss_pred hhhcCCCchhhhCc-eEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeecccccccccc-hhhheee
Confidence 45678886799988 67899999999999999999999999999885 77788888776541 111111 1122222
Q ss_pred CCcc---------ccCcEEEE---ecCCHHHHHHHHHhhhcc---------------------------CCCCeeEEEEe
Q psy2198 118 AKPK---------CSDKIFIT---HCYEFIDLKRTLESQSGF---------------------------IENKVGMIVID 158 (279)
Q Consensus 118 ~~~~---------~~~~i~~~---~~~~~~~l~~~i~~~~~~---------------------------~~~~~~lvvID 158 (279)
.-.+ +.+|+.+. ...+..++.+.+.+.+.. .-..|.+++-|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec
Confidence 2211 33343332 112333333333322211 12578888888
Q ss_pred CcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 159 SIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+.+.-.+.+ .-.++++.+.++.. .|.||++.+|...-.+
T Consensus 163 EPTGNLDp~-----------~s~~im~lfeeinr-~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 163 EPTGNLDPD-----------LSWEIMRLFEEINR-LGTTVLMATHDLELVN 201 (223)
T ss_pred CCCCCCChH-----------HHHHHHHHHHHHhh-cCcEEEEEeccHHHHH
Confidence 887643322 12446666666654 7999999888776554
No 100
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.07 E-value=1.7e-09 Score=89.95 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=39.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 19 il~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~ 67 (218)
T cd03255 19 ALKGV-SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTD 67 (218)
T ss_pred EEeee-EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEe
Confidence 34444 45789999999999999999999999998763 566777777654
No 101
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.07 E-value=1.3e-09 Score=87.95 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=81.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHH---H---hCCCCCccccCcE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLC---E---LSPLAKPKCSDKI 126 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~---~---~~~~~~~~~~~~i 126 (279)
.--+.+|++++|.|+||+|||||++.+++... +..|.+++++... .+...+...+ . +..++.. ....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~-~~~~- 93 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAH-LADR- 93 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHh-HhcC-
Confidence 44689999999999999999999999998763 5667777776533 1222221111 1 1112211 0111
Q ss_pred EEEecCCHHHH--HHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 127 FITHCYEFIDL--KRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 127 ~~~~~~~~~~l--~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
.....+..+. ....+.+. .+++++++|+.+.-.+. .....+.+.|++++++.+.++|+++|.
T Consensus 94 -~~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~-----------~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 94 -PFNELSGGERQRVLLARALA----QEPPILLLDEPTSHLDI-----------AHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred -CcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCH-----------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 1122333222 22222332 58899999999875432 233557777777766668999999998
Q ss_pred cccc
Q psy2198 205 TSAM 208 (279)
Q Consensus 205 ~~~~ 208 (279)
....
T Consensus 158 ~~~~ 161 (180)
T cd03214 158 LNLA 161 (180)
T ss_pred HHHH
Confidence 7754
No 102
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=1.9e-10 Score=96.10 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=92.2
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc------
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK------ 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~------ 121 (279)
+.|+.+ +-.+.+|+.++|+|+||||||||+..+++.+. +..|.+++++......+....+ .+..++-.+
T Consensus 18 ~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~~~-~~~vG~VfQnpd~q~ 92 (235)
T COG1122 18 AALKDV-SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLLEL-RQKVGLVFQNPDDQL 92 (235)
T ss_pred eeeeee-EEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHHHh-hcceEEEEECccccc
Confidence 445444 55799999999999999999999999999884 6667778888754211112222 222222111
Q ss_pred ----ccCcEEEE---ecCCHHHHHHHHHhhhcc---------------------------CCCCeeEEEEeCcchhhccc
Q psy2198 122 ----CSDKIFIT---HCYEFIDLKRTLESQSGF---------------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 122 ----~~~~i~~~---~~~~~~~l~~~i~~~~~~---------------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
+.+.+.+. ...+.+++.+.+.+.+.. -.-+|+++++|+.++..+.
T Consensus 93 ~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~- 171 (235)
T COG1122 93 FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP- 171 (235)
T ss_pred ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCH-
Confidence 11222221 122333444444333211 1137899999999885432
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....++++.++++.++.+.|+|+++|......
T Consensus 172 ----------~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~ 203 (235)
T COG1122 172 ----------KGRRELLELLKKLKEEGGKTIIIVTHDLELVL 203 (235)
T ss_pred ----------HHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHH
Confidence 23466888888888888999999999988764
No 103
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.06 E-value=2.7e-10 Score=97.05 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=79.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHH---HHHhCCCCCc--ccc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQ---LCELSPLAKP--KCS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~---~~~~~~~~~~--~~~ 123 (279)
.|+.+ .--+.+|++++|.||||||||||+..+++... +..|.+++++... ..+.+ ++.+...+.. .+.
T Consensus 27 il~~i-sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~---~~~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 27 VLNQL-DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPL---AEAREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEH---HHhhCceEEEecCccCCCCCcHH
Confidence 34443 44789999999999999999999999998763 5566556654321 00000 0011111111 012
Q ss_pred CcEEEEe-cCCHHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHHH
Q psy2198 124 DKIFITH-CYEFIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAH 178 (279)
Q Consensus 124 ~~i~~~~-~~~~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~ 178 (279)
+++.+.. ........+.+.. ..+ ...+++++++|+.+.-.+. .
T Consensus 100 enl~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~-----------~ 167 (257)
T PRK11247 100 DNVGLGLKGQWRDAALQALAA-VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-----------L 167 (257)
T ss_pred HHHHhcccchHHHHHHHHHHH-cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH-----------H
Confidence 2221110 0000111111110 000 1157899999999875432 2
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 179 DMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 179 ~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....+.+.|++++++.+.+||+++|.....
T Consensus 168 ~~~~l~~~L~~~~~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 168 TRIEMQDLIESLWQQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 335577777887777899999999987754
No 104
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.05 E-value=8.4e-10 Score=91.98 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=82.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHH-------HhCCCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLC-------ELSPLAK 119 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~-------~~~~~~~ 119 (279)
.|+.+ .--+.+|++++|.||||||||||+..+++... +..|.++++++... +......+. .+...+.
T Consensus 20 ~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 20 VLKGV-SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 34444 45789999999999999999999999998763 56677777765421 221111111 1111111
Q ss_pred cc--ccCcEEEE---ecCCHH----HHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 120 PK--CSDKIFIT---HCYEFI----DLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 120 ~~--~~~~i~~~---~~~~~~----~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
.. +.+++.+. ...+.. .+.+.+.. ..+ .-.+++++++|+.+.-.+.
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 174 (221)
T TIGR02211 96 PDFTALENVAMPLLIGKKSVKEAKERAYEMLEK-VGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174 (221)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCH
Confidence 11 12222110 001111 11111111 000 1158899999999875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.++|+++|......
T Consensus 175 -----------~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 175 -----------NNAKIIFDLMLELNRELNTSFLVVTHDLELAK 206 (221)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 22345777778887777899999999876543
No 105
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.05 E-value=2.7e-10 Score=100.46 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=95.2
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCeEEEEECCCC--CCHHHHHHHHHhCCCC-----
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP--HKGVLYICTESV--FPTARLAQLCELSPLA----- 118 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~--~~gvlyi~~e~~--~~~~~~~~~~~~~~~~----- 118 (279)
..|+.+ +--+.+|++++|+|+||||||||++.+++... +. ..|.++++++.. .+.+.+..+.....++
T Consensus 30 ~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~--p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 30 TAVNDL-NFSLRAGETLGIVGESGSGKSQTAFALMGLLA--ANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred EEEeee-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 345554 55789999999999999999999999998773 21 267777777653 2333322221111111
Q ss_pred ----Ccc------ccCcEEEEecCCHHHHHHHHHhhh---cc---------------------------CCCCeeEEEEe
Q psy2198 119 ----KPK------CSDKIFITHCYEFIDLKRTLESQS---GF---------------------------IENKVGMIVID 158 (279)
Q Consensus 119 ----~~~------~~~~i~~~~~~~~~~l~~~i~~~~---~~---------------------------~~~~~~lvvID 158 (279)
.+. +.+.+......+..+....+.+.+ .+ ...++++++.|
T Consensus 107 ~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 107 MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 110 000100000111111111111110 00 11478999999
Q ss_pred CcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhh
Q psy2198 159 SIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHD 227 (279)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~ 227 (279)
+.+...+. ....++.+.|+++.++.+.++|+++|....... +.......|.+.+....
T Consensus 187 EPts~LD~-----------~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 187 EPTTALDV-----------TVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred CCCccCCH-----------HHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 98875432 233567788888888889999999999876542 45555666666554433
No 106
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=6.4e-10 Score=96.02 Aligned_cols=145 Identities=12% Similarity=0.186 Sum_probs=85.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHH---hCC--CCC-c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCE---LSP--LAK-P 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~---~~~--~~~-~ 120 (279)
.|+.+ .--+.+|++++|+|+||||||||+..+++... +..|.+++++.... +...+.+.+. +.. .+. .
T Consensus 22 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 22 TLNDV-SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 45554 45789999999999999999999999998773 66777888776432 1112111111 110 000 0
Q ss_pred cccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccccc
Q psy2198 121 KCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 121 ~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
.+.+++.+.. ..+..+..+.+.+.+ .+ .-.+++++++|+.+...+.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~---- 173 (279)
T PRK13650 98 TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP---- 173 (279)
T ss_pred cHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH----
Confidence 1222322211 011111111111111 00 1158999999999875432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.|.|||+++|.....
T Consensus 174 -------~~~~~l~~~l~~l~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 174 -------EGRLELIKTIKGIRDDYQMTVISITHDLDEV 204 (279)
T ss_pred -------HHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 2345677888888877799999999987655
No 107
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=7.8e-10 Score=92.95 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=39.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||||||||++.+++... +..|.++++++.
T Consensus 24 il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 72 (233)
T PRK11629 24 VLHNV-SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQP 72 (233)
T ss_pred eEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEE
Confidence 44444 45789999999999999999999999998763 566777887754
No 108
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.05 E-value=9.3e-10 Score=92.16 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=79.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHH-------HhCCCCCcc--cc
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLC-------ELSPLAKPK--CS 123 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~-------~~~~~~~~~--~~ 123 (279)
+--+.+|++++|.|+||+|||||+..+++... +..|.++++++... +........ .+...+... +.
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~ 106 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNAL 106 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHH
Confidence 34689999999999999999999999998763 56666777765321 221111111 111111111 11
Q ss_pred CcEEEE---ecCCHH----HHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccch
Q psy2198 124 DKIFIT---HCYEFI----DLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 124 ~~i~~~---~~~~~~----~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
+++.+. ...... .+.+.+.. ..+ ...+++++++|+.+...+.
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~------ 179 (228)
T PRK10584 107 ENVELPALLRGESSRQSRNGAKALLEQ-LGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR------ 179 (228)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH-cCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH------
Confidence 222110 000111 11111110 000 1158999999999875432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.+||+++|.....
T Consensus 180 -----~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 180 -----QTGDKIADLLFSLNREHGTTLILVTHDLQLA 210 (228)
T ss_pred -----HHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 2335677888888777799999999987644
No 109
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.04 E-value=1.4e-09 Score=87.20 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=73.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
-+++|++++|.||||+|||||++.+++... +..|.+++++... ++ ..+.. ..+..+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i--------------~~---~~q~~----~LSgGq 76 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITP--------------VY---KPQYI----DLSGGE 76 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEE--------------EE---EcccC----CCCHHH
Confidence 579999999999999999999999998773 5666666655311 00 00000 033222
Q ss_pred --HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 --LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 --l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+. .+++++++|+.+.-++. .....+.+.+++++++.+.++|+++|......
T Consensus 77 ~qrv~laral~----~~p~lllLDEPts~LD~-----------~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 77 LQRVAIAAALL----RNATFYLFDEPSAYLDI-----------EQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHh----cCCCEEEEECCcccCCH-----------HHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 222222322 47899999999875432 22345667777776655589999999876553
No 110
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=1.7e-10 Score=96.09 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=37.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ .--+++|++++|.||||||||||+..+++... +..|.+++++.
T Consensus 19 il~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~ 66 (220)
T cd03293 19 ALEDI-SLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGE 66 (220)
T ss_pred EEece-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCE
Confidence 34443 44789999999999999999999999998763 55666666554
No 111
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.04 E-value=6.2e-10 Score=90.01 Aligned_cols=140 Identities=13% Similarity=0.151 Sum_probs=80.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-------
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK------- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~------- 121 (279)
.|+.+ .--+++|++++|.|+||+|||||++.+++... +..|.++++++......... ......++-.+
T Consensus 15 ~l~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~-~~~~~i~~~~q~~~~~~~ 89 (182)
T cd03215 15 AVRDV-SFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD-AIRAGIAYVPEDRKREGL 89 (182)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH-HHhCCeEEecCCcccCcc
Confidence 34444 44789999999999999999999999998873 56677788776432110000 11111111100
Q ss_pred -----ccCcEEEEecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcC
Q psy2198 122 -----CSDKIFITHCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHR 195 (279)
Q Consensus 122 -----~~~~i~~~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~ 195 (279)
+.+++.+....+..+... .+... .-.+++++++|+.+.-.+. .....+.+.|+++.+ .+
T Consensus 90 ~~~~t~~e~l~~~~~LS~G~~qrl~la~a---l~~~p~llllDEP~~~LD~-----------~~~~~l~~~l~~~~~-~~ 154 (182)
T cd03215 90 VLDLSVAENIALSSLLSGGNQQKVVLARW---LARDPRVLILDEPTRGVDV-----------GAKAEIYRLIRELAD-AG 154 (182)
T ss_pred cCCCcHHHHHHHHhhcCHHHHHHHHHHHH---HccCCCEEEECCCCcCCCH-----------HHHHHHHHHHHHHHH-CC
Confidence 111111100011111111 11111 3368899999999875432 223456677777754 48
Q ss_pred cEEEEeccccccc
Q psy2198 196 IVVICTNQVTSAM 208 (279)
Q Consensus 196 ~~vi~v~h~~~~~ 208 (279)
.++|+++|.....
T Consensus 155 ~tiii~sh~~~~~ 167 (182)
T cd03215 155 KAVLLISSELDEL 167 (182)
T ss_pred CEEEEEeCCHHHH
Confidence 9999999987544
No 112
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=2.9e-10 Score=96.87 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=36.8
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
|+.+ .--+++|++++|.|+||||||||+..+++... +..|.+++++.
T Consensus 17 l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~ 63 (255)
T PRK11248 17 LEDI-NLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGK 63 (255)
T ss_pred Eeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCE
Confidence 4443 44689999999999999999999999998763 55566666554
No 113
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=5.6e-11 Score=105.76 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=84.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++++... +..+ ...++.+...+.+. +.
T Consensus 19 ~l~~v-sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 19 VIKGI-DLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred EEeee-eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 45544 45789999999999999999999999999774 67778888876432 1111 01111111111111 22
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+|+.+.. ..+..+....+.+.+ .+ ...+|+++++|+..+-.+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~------- 167 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA------- 167 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------
Confidence 3332211 011111111111111 00 1258999999998875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++.++.+.++|+++|.....
T Consensus 168 ----~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea 198 (356)
T PRK11650 168 ----KLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA 198 (356)
T ss_pred ----HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2234566777788777899999999977644
No 114
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=3.4e-10 Score=99.69 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=95.6
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc---
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS-QPHKGVLYICTESV--FPTARLAQLCELSPLAKPK--- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~-~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~--- 121 (279)
..|+.+ +--+.+|++++|+|+||||||||++.+++....+ ....|.+++++++. .+.+...++.....++-++
T Consensus 21 ~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 21 RAVDRI-SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 356665 5579999999999999999999999999876311 02456777777643 2333333221111111111
Q ss_pred ------------ccCcEEEEecCCHHH----HHHHHHhhhcc---------------------------CCCCeeEEEEe
Q psy2198 122 ------------CSDKIFITHCYEFID----LKRTLESQSGF---------------------------IENKVGMIVID 158 (279)
Q Consensus 122 ------------~~~~i~~~~~~~~~~----l~~~i~~~~~~---------------------------~~~~~~lvvID 158 (279)
+.+.+.........+ ..+.+.. ..+ ...+++++++|
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~-~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilD 178 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQ-VGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIAD 178 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-CCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 000000000001111 1111111 000 11489999999
Q ss_pred CcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhh
Q psy2198 159 SIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHD 227 (279)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~ 227 (279)
+.+...+. ....++.+.|+++.++.+.++|+++|....... +.......|.+.+....
T Consensus 179 EPts~LD~-----------~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 179 EPTTALDV-----------TIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred CCCCCCCH-----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99875432 233567788888888889999999999876543 45555566666554433
No 115
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.03 E-value=9e-10 Score=89.80 Aligned_cols=149 Identities=14% Similarity=0.210 Sum_probs=93.0
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCcc---------ccC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPK---------CSD 124 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~---------~~~ 124 (279)
-.+++|+++.+.|+||+||||+++.+++... ...|.+.+++++.. ++.++. ..-..+-++ +.+
T Consensus 24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~r~---r~Gi~~VPegR~iF~~LTVeE 97 (237)
T COG0410 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHERA---RLGIAYVPEGRRIFPRLTVEE 97 (237)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHHHH---hCCeEeCcccccchhhCcHHH
Confidence 3689999999999999999999999998873 55677888777652 222221 111112111 334
Q ss_pred cEEEE---e------cCCHHHHHHHHHhhhcc---------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 125 KIFIT---H------CYEFIDLKRTLESQSGF---------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 125 ~i~~~---~------~~~~~~l~~~i~~~~~~---------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
|+.+. . ...++++.+.+-.+.+. .-.+|+++++|+.+.-..
T Consensus 98 NL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLa--------- 168 (237)
T COG0410 98 NLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLA--------- 168 (237)
T ss_pred HHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcC---------
Confidence 44321 0 01133333333222111 115899999999987432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLT 221 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~ 221 (279)
-..+.++.+.++++.++.+.||+++.|..+..-. +..+....|.+
T Consensus 169 --P~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gri 215 (237)
T COG0410 169 --PKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRI 215 (237)
T ss_pred --HHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEE
Confidence 2467889999999998889999999987765432 34444444444
No 116
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.03 E-value=1.5e-10 Score=103.00 Aligned_cols=145 Identities=13% Similarity=0.165 Sum_probs=83.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCC-------CC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPL-------AK 119 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~-------~~ 119 (279)
.|+.+ .--+++|++++|.|+||||||||++.+++... +..|.++++++... +...+..+..+..+ +.
T Consensus 8 ~l~~v-s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 8 GVNDA-DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred eEEee-EEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 34443 45789999999999999999999999999874 67788888887542 33332222111111 11
Q ss_pred cc--ccCcEEEEec---CCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccc
Q psy2198 120 PK--CSDKIFITHC---YEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 120 ~~--~~~~i~~~~~---~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
+. +.+|+.+... .+..+..+.+.+.+ .+ ...+++++++|+...-.+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~- 162 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP- 162 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-
Confidence 11 2233221110 11111111111111 10 1157888889888764332
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|.++.++.+.|||+++|.....
T Consensus 163 ----------~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea 193 (363)
T TIGR01186 163 ----------LIRDSMQDELKKLQATLQKTIVFITHDLDEA 193 (363)
T ss_pred ----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1234566666677666789999999887754
No 117
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.02 E-value=6e-10 Score=106.60 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=101.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhC---C-CCCccccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELS---P-LAKPKCSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~---~-~~~~~~~~~i~~ 128 (279)
.-.+++|+.++|+|++|||||||++.+.+.+. +..|.+++|+.+. .+...+++.+.-. . -+.-.+.+|+..
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l 569 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIAL 569 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhc
Confidence 34899999999999999999999999999985 7788899988864 3444444332110 0 011114566666
Q ss_pred EecCC-HHHHHHHHHhhh-----c--------------------------c---CCCCeeEEEEeCcchhhccccccchh
Q psy2198 129 THCYE-FIDLKRTLESQS-----G--------------------------F---IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 129 ~~~~~-~~~l~~~i~~~~-----~--------------------------~---~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
.++.. .+++.+.+...- . + .-.+|+++++|+-++-.+..
T Consensus 570 ~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~------ 643 (709)
T COG2274 570 GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE------ 643 (709)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHh------
Confidence 55433 355554443111 0 0 12589999999988754322
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhhe
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRD 230 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~rl 230 (279)
.-+.+.+.|.++. .++|+|+++|-...... +.......|.+.+..+...+
T Consensus 644 -----sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 644 -----TEAIILQNLLQIL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred -----HHHHHHHHHHHHh--cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHH
Confidence 1244667777665 57999999988777665 45555555665555544443
No 118
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.6e-10 Score=102.90 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=78.8
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC------HHHHHH---HHHhCCCCCcc--ccC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP------TARLAQ---LCELSPLAKPK--CSD 124 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~------~~~~~~---~~~~~~~~~~~--~~~ 124 (279)
--+++|++++|.||||||||||++.+++... +..|.++++++...+ .....+ ++.+...+.+. +.+
T Consensus 19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 3578999999999999999999999998763 566777776653211 000000 11111111110 222
Q ss_pred cEEEEe-cCCHHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHHHH
Q psy2198 125 KIFITH-CYEFIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHD 179 (279)
Q Consensus 125 ~i~~~~-~~~~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~ 179 (279)
++.+.. ......+.+.+.. ..+ ...+++++++|+.+.-.+. ..
T Consensus 96 nl~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~-----------~~ 163 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVAL-LGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL-----------PR 163 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHH-cCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH-----------HH
Confidence 222110 0011111111111 000 1158999999999875432 22
Q ss_pred HHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 180 MRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 180 ~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
...+.+.|++++++.+.++|+++|.....
T Consensus 164 ~~~l~~~L~~l~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 164 KRELLPYLERLAREINIPILYVSHSLDEI 192 (352)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 35577778888877899999999987654
No 119
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=9.1e-10 Score=95.14 Aligned_cols=146 Identities=14% Similarity=0.245 Sum_probs=84.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH---HHHHHHHH---hCCC--C-C
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT---ARLAQLCE---LSPL--A-K 119 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~---~~~~~~~~---~~~~--~-~ 119 (279)
.|+.+ +--+.+|++++|+|+||+|||||+..+++... +..|.+++++...... ..+.+.+. +... + .
T Consensus 25 vl~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 25 ALDDV-NLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 45554 55789999999999999999999999998874 6677788877643211 11111111 1100 0 0
Q ss_pred ccccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccc
Q psy2198 120 PKCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 120 ~~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~ 169 (279)
..+.+++.+.. ..+..+..+.+.+.+ .+ ...+++++++|+.+.-.+.
T Consensus 101 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~--- 177 (280)
T PRK13633 101 TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP--- 177 (280)
T ss_pred ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH---
Confidence 00112221110 011111111111111 00 1158999999999875432
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.+||+++|......
T Consensus 178 --------~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 178 --------SGRREVVNTIKELNKKYGITIILITHYMEEAV 209 (280)
T ss_pred --------HHHHHHHHHHHHHHHhcCCEEEEEecChHHHh
Confidence 23345777888887777999999999887654
No 120
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.02 E-value=9.7e-11 Score=104.12 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=83.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+.+|++++|.||||||||||++.+++... +..|.++++++... +..+ ...++.+...+.+. +.
T Consensus 17 ~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 17 VLNDI-SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred EEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 34443 34688999999999999999999999999763 66777888776432 1111 00111111112111 22
Q ss_pred CcEEEEe-------cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccc
Q psy2198 124 DKIFITH-------CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 124 ~~i~~~~-------~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+++.+.. ..+..+..+.+.+.+ .+ .-.+++++++|+...-.+.
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~--- 169 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA--- 169 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH---
Confidence 2332210 111111111111111 11 1158899999998875432
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++.++.++|+|+++|.....
T Consensus 170 --------~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea 200 (353)
T PRK10851 170 --------QVRKELRRWLRQLHEELKFTSVFVTHDQEEA 200 (353)
T ss_pred --------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2234566777788777899999999987754
No 121
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.02 E-value=1.9e-09 Score=86.87 Aligned_cols=134 Identities=14% Similarity=0.160 Sum_probs=79.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-------
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK------- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~------- 121 (279)
.|+.+ .--+++|++++|.|++|+|||||++.+++... +..|.+++++..... .........++-.+
T Consensus 17 ~l~~i-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~---~~~~~~~~i~~~~q~~~~~~~ 89 (178)
T cd03247 17 VLKNL-SLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSD---LEKALSSLISVLNQRPYLFDT 89 (178)
T ss_pred ceEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHH---HHHHHHhhEEEEccCCeeecc
Confidence 34443 45789999999999999999999999998763 556667777653211 11111111111111
Q ss_pred -ccCcEEEEecCCHHHHHH--HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEE
Q psy2198 122 -CSDKIFITHCYEFIDLKR--TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVV 198 (279)
Q Consensus 122 -~~~~i~~~~~~~~~~l~~--~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~v 198 (279)
+.+++ ....+..+... ..+. .-.+++++++|+.+.-.+. .....+.+.|+++. .+.++
T Consensus 90 tv~~~i--~~~LS~G~~qrv~lara----l~~~p~~lllDEP~~~LD~-----------~~~~~l~~~l~~~~--~~~ti 150 (178)
T cd03247 90 TLRNNL--GRRFSGGERQRLALARI----LLQDAPIVLLDEPTVGLDP-----------ITERQLLSLIFEVL--KDKTL 150 (178)
T ss_pred cHHHhh--cccCCHHHHHHHHHHHH----HhcCCCEEEEECCcccCCH-----------HHHHHHHHHHHHHc--CCCEE
Confidence 11111 11222222221 2222 2358899999999875432 12345667777764 37899
Q ss_pred EEeccccccc
Q psy2198 199 ICTNQVTSAM 208 (279)
Q Consensus 199 i~v~h~~~~~ 208 (279)
|+++|.....
T Consensus 151 i~~sh~~~~~ 160 (178)
T cd03247 151 IWITHHLTGI 160 (178)
T ss_pred EEEecCHHHH
Confidence 9999987654
No 122
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=7.4e-11 Score=104.76 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=83.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHH-HHHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTA-RLAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~-~~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+.+|++++|.||||||||||++.+++... +..|.++++++... +.. |...++.+...+.+. +.
T Consensus 21 ~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 21 VIDNL-NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 34444 44789999999999999999999999998874 66777888776432 111 111111122222111 22
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+|+.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+...-.+.
T Consensus 97 eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~------- 169 (351)
T PRK11432 97 ENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA------- 169 (351)
T ss_pred HHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH-------
Confidence 3332210 011111111111111 00 1147899999998774332
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++.+.|+++.++.+.|+|+++|.....
T Consensus 170 ----~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~ 200 (351)
T PRK11432 170 ----NLRRSMREKIRELQQQFNITSLYVTHDQSEA 200 (351)
T ss_pred ----HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 2234566777777777899999999988764
No 123
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.01 E-value=1.7e-10 Score=101.98 Aligned_cols=145 Identities=14% Similarity=0.214 Sum_probs=85.9
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCcc----
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPK---- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~---- 121 (279)
..|+.+ +--+++|++++|.|+||||||||++.+++... +..|.++++++... +...+... ....++-++
T Consensus 19 ~~L~~v-sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l~~~-r~~Ig~v~Q~~~l 93 (343)
T TIGR02314 19 QALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSELTKA-RRQIGMIFQHFNL 93 (343)
T ss_pred EEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHHHHH-hcCEEEEECCccc
Confidence 345555 45789999999999999999999999998763 66778888877532 22222211 111111111
Q ss_pred -----ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 122 -----CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 -----~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+.+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+.+.-.+.
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~ 173 (343)
T TIGR02314 94 LSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 (343)
T ss_pred cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 222221110 011111111111111 11 1148899999998875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++.++.++|||+++|.....
T Consensus 174 -----------~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 174 -----------ATTQSILELLKEINRRLGLTILLITHEMDVV 204 (343)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2335677788888877899999999987654
No 124
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.01 E-value=6.7e-10 Score=90.40 Aligned_cols=48 Identities=29% Similarity=0.469 Sum_probs=37.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ +--+.+|++++|.|+||||||||+..+++... +..|.+++++..
T Consensus 8 l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~ 55 (190)
T TIGR01166 8 LKGL-NFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEP 55 (190)
T ss_pred ecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEE
Confidence 4443 44689999999999999999999999988763 566667776653
No 125
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=3.4e-09 Score=83.49 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=79.4
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
--+++|+++.|+|++|+|||||+..+++... +..|.+++++........ .+ ....+.+....+..
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~-~~-----------~~~~i~~~~qlS~G 84 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPL-EE-----------LRRRIGYVPQLSGG 84 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCH-HH-----------HHhceEEEeeCCHH
Confidence 3688999999999999999999999998763 567778887764321000 11 11123332224443
Q ss_pred HHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 136 DLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 136 ~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+... .+... ....++++++|+++.-.+. .....+.+.++++.+. +.++++++|......
T Consensus 85 ~~~r~~l~~~---l~~~~~i~ilDEp~~~lD~-----------~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 85 QRQRVALARA---LLLNPDLLLLDEPTSGLDP-----------ASRERLLELLRELAEE-GRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHHHHHH---HhcCCCEEEEeCCCcCCCH-----------HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 3322 22222 2246899999999875432 1234566777776654 799999999877654
No 126
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.01 E-value=9.6e-11 Score=104.17 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=84.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHH-HHHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTA-RLAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~-~~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++++... +.. |...++.+...+.+. +.
T Consensus 19 ~l~~v-s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 19 ALKDI-SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 34443 44688999999999999999999999999874 67777888776432 111 101111111111111 22
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhhc---c------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQSG---F------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~~---~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+|+.+.. ..+..+....+.+.++ + ...+|+++++|+...-.+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~------- 167 (353)
T TIGR03265 95 DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDA------- 167 (353)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH-------
Confidence 2222210 0111111111111111 0 1148899999998875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++.+.|+++.++.++|+|+++|.....
T Consensus 168 ----~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea 198 (353)
T TIGR03265 168 ----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEA 198 (353)
T ss_pred ----HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 2234577777788778899999999988754
No 127
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.01 E-value=6.6e-10 Score=101.74 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=111.0
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc---
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS-QPHKGVLYICTESV--FPTARLAQLCELSPLAKPK--- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~-~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~--- 121 (279)
..++.+ +--+.+|++++|+|+|||||||+++.+.+..-.+ ...+|-+++++.+. .+.+...++......+-.+
T Consensus 23 ~~v~~v-sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 23 PAVRDV-SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeecc-eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 455555 5578999999999999999999999999877421 11246666666533 2333333332222221111
Q ss_pred ------------ccCcEEEEecCCHHHHHHHHHhhhc---c--------------------------CCCCeeEEEEeCc
Q psy2198 122 ------------CSDKIFITHCYEFIDLKRTLESQSG---F--------------------------IENKVGMIVIDSI 160 (279)
Q Consensus 122 ------------~~~~i~~~~~~~~~~l~~~i~~~~~---~--------------------------~~~~~~lvvID~l 160 (279)
+.+-+......+.++..+...+++. + ...+|+++|.|+.
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 0000000000011111111111110 0 1258899999999
Q ss_pred chhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccc
Q psy2198 161 AGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
++..+. ....+++..|+++.++.|+++|+++|...-... +.......|.+++......++=...+..
T Consensus 182 TTaLDv-----------t~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpY 250 (539)
T COG1123 182 TTALDV-----------TTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPY 250 (539)
T ss_pred ccccCH-----------HHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcc
Confidence 986432 344678999999999999999999999877655 6777888888888777777766665555
Q ss_pred cce
Q psy2198 239 SIK 241 (279)
Q Consensus 239 ~~~ 241 (279)
...
T Consensus 251 T~~ 253 (539)
T COG1123 251 TRG 253 (539)
T ss_pred cHH
Confidence 433
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=8.1e-10 Score=91.42 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=80.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCc--cccCcEEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKP--KCSDKIFIT 129 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~--~~~~~i~~~ 129 (279)
.--+.+|++++|.||||+|||||++.+++... +..|.++++++... +..+ ...++.+...+.. .+.+++.+.
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 34689999999999999999999999998763 56677777765321 1111 0001111111111 122333211
Q ss_pred ec-------CCHHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHHH
Q psy2198 130 HC-------YEFIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAH 178 (279)
Q Consensus 130 ~~-------~~~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~ 178 (279)
.. .....+.+.+.. ..+ .-.+++++++|+.+...+. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~-----------~ 162 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALAR-VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP-----------A 162 (211)
T ss_pred cccccCccHHHHHHHHHHHHH-cCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH-----------H
Confidence 10 001111111111 000 1158999999999875432 2
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 179 DMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 179 ~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....+.+.|++++++.++++|+++|......
T Consensus 163 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 2345777788887778999999999877553
No 129
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.01 E-value=8.6e-10 Score=100.27 Aligned_cols=150 Identities=15% Similarity=0.257 Sum_probs=92.6
Q ss_pred cCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC-C-CHHHHHHH----HHhCCCC
Q psy2198 45 TGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV-F-PTARLAQL----CELSPLA 118 (279)
Q Consensus 45 tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~-~-~~~~~~~~----~~~~~~~ 118 (279)
.|++.||.+ .--+.+|+++++.|.||+|||||++.+++.+. ++.|.++++++.. + ++....+. +.|...+
T Consensus 19 ggV~AL~~v-~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L 94 (500)
T COG1129 19 GGVKALDGV-SLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSL 94 (500)
T ss_pred CCceeeccc-eeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHHHHHhCCcEEEeechhc
Confidence 466778877 66899999999999999999999999999985 7888999988743 1 22221110 0111112
Q ss_pred Ccc--ccCcEEEEecCC-------HHHHHHHHHhhh------------------------cc---CCCCeeEEEEeCcch
Q psy2198 119 KPK--CSDKIFITHCYE-------FIDLKRTLESQS------------------------GF---IENKVGMIVIDSIAG 162 (279)
Q Consensus 119 ~~~--~~~~i~~~~~~~-------~~~l~~~i~~~~------------------------~~---~~~~~~lvvID~l~~ 162 (279)
-+. +.+|+++.+... ...+.+...+.+ ++ ...+.+++|+|+.++
T Consensus 95 ~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTa 174 (500)
T COG1129 95 VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTA 174 (500)
T ss_pred cCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 121 344554433211 112211111111 10 224788999999998
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 163 IFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.+.. .....+++.++++. +.|+++|+++|-..+.-.
T Consensus 175 aLt~-----------~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~ 210 (500)
T COG1129 175 ALTV-----------KETERLFDLIRRLK-AQGVAIIYISHRLDEVFE 210 (500)
T ss_pred cCCH-----------HHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHH
Confidence 6432 23445666666655 489999999997776544
No 130
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.00 E-value=8.1e-10 Score=88.85 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=39.1
Q ss_pred cCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 45 TGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 45 tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|-.-||.+ .--+++|++.+|.||||+|||||+..+++... +.+|.+.+.+.
T Consensus 12 ~Gr~ll~~v-sl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~ 63 (259)
T COG4559 12 AGRRLLDGV-SLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGV 63 (259)
T ss_pred ecceeccCc-ceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCc
Confidence 344445544 44689999999999999999999999999985 55554444444
No 131
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=3.5e-09 Score=88.20 Aligned_cols=146 Identities=12% Similarity=0.178 Sum_probs=81.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC-HHHHHHHH---HhCCCCCcc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP-TARLAQLC---ELSPLAKPK--C 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~-~~~~~~~~---~~~~~~~~~--~ 122 (279)
.|+.+ .--+.+|++++|.|+||+|||||++.+++... +..|.++++++.... .....+.+ .+...+... +
T Consensus 15 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 15 AVRGV-SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred eeece-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 34443 45789999999999999999999999998763 566667776654311 11111111 111111110 1
Q ss_pred cCcEEEE---ecCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccch
Q psy2198 123 SDKIFIT---HCYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 123 ~~~i~~~---~~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
.+++.+. ......+..+.+.+.+ .+ .-.+++++++|+.+...+.
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~------ 164 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP------ 164 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH------
Confidence 1111100 0000111111111100 00 1158999999999875432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++++.+||+++|......
T Consensus 165 -----~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 165 -----QTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE 196 (220)
T ss_pred -----HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23356777788887777999999999876543
No 132
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=3.9e-10 Score=92.69 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=93.0
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccC
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK--CSD 124 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~--~~~ 124 (279)
+..|+.+ +--+.+|+.++|+|+||+|||||++.+++.+. |+.|.+.+.+.-. .++.-..++.++ -.+
T Consensus 40 ~~aL~di-sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~-------~li~lg~Gf~pelTGre 108 (249)
T COG1134 40 FWALKDI-SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVA-------PLIELGAGFDPELTGRE 108 (249)
T ss_pred EEEecCc-eEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEe-------hhhhcccCCCcccchHH
Confidence 3456665 55789999999999999999999999999884 7777666666533 122222233333 111
Q ss_pred cEEEEe----------------cCCHHHHHHHHHhhh-----------cc---CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 125 KIFITH----------------CYEFIDLKRTLESQS-----------GF---IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 125 ~i~~~~----------------~~~~~~l~~~i~~~~-----------~~---~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
|+.+.. ...+.++-+.+...+ .+ ...+|+++++|++-+.-+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~-------- 180 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA-------- 180 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH--------
Confidence 221110 001111111111111 00 4468999999998876332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeecc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYL 235 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~ 235 (279)
.-.++..+.+.++.+ .+.++|+++|...... +.|+..+|+++.
T Consensus 181 ---~F~~K~~~rl~e~~~-~~~tiv~VSHd~~~I~--------------~~Cd~~i~l~~G 223 (249)
T COG1134 181 ---AFQEKCLERLNELVE-KNKTIVLVSHDLGAIK--------------QYCDRAIWLEHG 223 (249)
T ss_pred ---HHHHHHHHHHHHHHH-cCCEEEEEECCHHHHH--------------HhcCeeEEEeCC
Confidence 234556667777755 4699999999887654 567777777764
No 133
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=2.3e-09 Score=85.82 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=77.6
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCccccCcEE
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPLAKPKCSDKIF 127 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~~~~~i~ 127 (279)
|+.+ .--+++|+++.|.||+|+|||||++.+++... +..|.++++++.. .+.....+. .++..+ +. .
T Consensus 18 l~~i-~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~----i~~~~~--~~-~ 86 (171)
T cd03228 18 LKDV-SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLRKN----IAYVPQ--DP-F 86 (171)
T ss_pred ccce-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHHhh----EEEEcC--Cc-h
Confidence 4443 34689999999999999999999999998763 5667777777542 111111111 111111 00 1
Q ss_pred EEec------CCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEE
Q psy2198 128 ITHC------YEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVIC 200 (279)
Q Consensus 128 ~~~~------~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~ 200 (279)
+... .+..+... .+... ...+++++++|+.+...+. .....+.+.|+++.+ +.++|+
T Consensus 87 ~~~~t~~e~lLS~G~~~rl~la~a---l~~~p~llllDEP~~gLD~-----------~~~~~l~~~l~~~~~--~~tii~ 150 (171)
T cd03228 87 LFSGTIRENILSGGQRQRIAIARA---LLRDPPILILDEATSALDP-----------ETEALILEALRALAK--GKTVIV 150 (171)
T ss_pred hccchHHHHhhCHHHHHHHHHHHH---HhcCCCEEEEECCCcCCCH-----------HHHHHHHHHHHHhcC--CCEEEE
Confidence 1111 22222111 11111 2358899999999875432 123456666666643 699999
Q ss_pred ecccccccC
Q psy2198 201 TNQVTSAMT 209 (279)
Q Consensus 201 v~h~~~~~~ 209 (279)
++|......
T Consensus 151 ~sh~~~~~~ 159 (171)
T cd03228 151 IAHRLSTIR 159 (171)
T ss_pred EecCHHHHH
Confidence 999876543
No 134
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=5.2e-10 Score=98.58 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=94.0
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCcc----
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPK---- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~---- 121 (279)
..|+.+ .--+.+|++++|+|+||||||||++.+++... +..|.++++++... +.+.+..+. ...++-.+
T Consensus 29 ~~l~~v-sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l~~~~~~~~~~~r-~~i~~v~Q~~~~ 103 (327)
T PRK11308 29 KALDGV-SFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKLLR-QKIQIVFQNPYG 103 (327)
T ss_pred eEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEcCcCCHHHHHHHh-CCEEEEEcCchh
Confidence 345554 44789999999999999999999999998763 55677777776432 222222211 11111111
Q ss_pred -------ccCcEE----EEecCCHHH----HHHHHHhh------hcc------------------CCCCeeEEEEeCcch
Q psy2198 122 -------CSDKIF----ITHCYEFID----LKRTLESQ------SGF------------------IENKVGMIVIDSIAG 162 (279)
Q Consensus 122 -------~~~~i~----~~~~~~~~~----l~~~i~~~------~~~------------------~~~~~~lvvID~l~~ 162 (279)
+.+.+. .....+..+ ..+.+... ... ...+++++|+|+.+.
T Consensus 104 ~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts 183 (327)
T PRK11308 104 SLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVS 183 (327)
T ss_pred hcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 000000 000011111 11111110 000 114899999999988
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhh
Q psy2198 163 IFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAH 226 (279)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~ 226 (279)
..+. ....++++.|+++.++.+.++|+++|....... +.......|.+.+...
T Consensus 184 ~LD~-----------~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 184 ALDV-----------SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred cCCH-----------HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 5432 233567788888888889999999999877653 4555555666655433
No 135
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=95.00 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=108.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhC--------CCCCcc---
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELS--------PLAKPK--- 121 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~--------~~~~~~--- 121 (279)
+--+++|+.+.|+|++|||||||.+.+.... +..|.++|.++.. ++.+...-+..+. .++.+.
T Consensus 307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV 382 (534)
T COG4172 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTV 382 (534)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCH
Confidence 3478999999999999999999999999887 3447888888764 2222211111110 111111
Q ss_pred ---ccCcEEEEe-cCCHHHHHHHHHhhhc-c---------------------------CCCCeeEEEEeCcchhhccccc
Q psy2198 122 ---CSDKIFITH-CYEFIDLKRTLESQSG-F---------------------------IENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 122 ---~~~~i~~~~-~~~~~~l~~~i~~~~~-~---------------------------~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+.+.+.+.. ..+-.+-.+.+.+.+. . .--+|+++++|+.++..+
T Consensus 383 ~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD---- 458 (534)
T COG4172 383 GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD---- 458 (534)
T ss_pred HHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh----
Confidence 233334433 2222222222222111 0 113789999999987542
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccc
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
.+...+++..|+++.+++|.+-++++|.-+-... +...++-.|.++++.....++-.+....
T Consensus 459 -------~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~Y 522 (534)
T COG4172 459 -------RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEY 522 (534)
T ss_pred -------HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHH
Confidence 2344678889999999999999999999887765 5667777788888887777776655443
No 136
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.00 E-value=2e-09 Score=95.31 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=83.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH-HHHHHHH---HhCCCCCcc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT-ARLAQLC---ELSPLAKPK--C 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~-~~~~~~~---~~~~~~~~~--~ 122 (279)
.|+.+ +--+++|++++|.||||+|||||+..+++... +..|.+++++...... ....+.+ .+...+... +
T Consensus 56 ~l~~i-s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 56 VVNGL-SFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 34443 33689999999999999999999999998774 6677778877643211 1111111 111111111 1
Q ss_pred cCcEEEEe---cCCHHHHHHHHH---hhhcc------------------------CCCCeeEEEEeCcchhhccccccch
Q psy2198 123 SDKIFITH---CYEFIDLKRTLE---SQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 123 ~~~i~~~~---~~~~~~l~~~i~---~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
.+++.+.. ..+..+....+. +...+ .-.+|+++++|+.+.-.+.
T Consensus 132 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~------ 205 (340)
T PRK13536 132 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP------ 205 (340)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH------
Confidence 12221100 011111111111 11110 1158999999999985432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.....+.+.|+++++ .+.|||+++|.......
T Consensus 206 -----~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 206 -----HARHLIWERLRSLLA-RGKTILLTTHFMEEAER 237 (340)
T ss_pred -----HHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHH
Confidence 223456677777765 59999999999887654
No 137
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=1.6e-09 Score=89.71 Aligned_cols=48 Identities=29% Similarity=0.455 Sum_probs=37.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ +--+++|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 16 l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~ 63 (213)
T cd03259 16 LDDL-SLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRD 63 (213)
T ss_pred ecce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEE
Confidence 4443 44789999999999999999999999998763 566767776653
No 138
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.1e-09 Score=94.45 Aligned_cols=146 Identities=12% Similarity=0.205 Sum_probs=85.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC--HHHHHHHHH---hCC--CC-Cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP--TARLAQLCE---LSP--LA-KP 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~--~~~~~~~~~---~~~--~~-~~ 120 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.+++++..... ...+.+.+. +.. .+ ..
T Consensus 22 ~l~~v-sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 22 ALKDV-SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ceeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 45544 45789999999999999999999999998763 567777787764321 111111111 110 00 00
Q ss_pred cccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccccc
Q psy2198 121 KCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 121 ~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
.+.+++.+.. ..+..+..+.+.+.+ .+ .-.+|+++++|+.+.-.+.
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~---- 173 (279)
T PRK13635 98 TVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP---- 173 (279)
T ss_pred cHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH----
Confidence 1223322210 011111111111111 00 1158999999999875432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.|||+++|......
T Consensus 174 -------~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 174 -------RGRREVLETVRQLKEQKGITVLSITHDLDEAA 205 (279)
T ss_pred -------HHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 23456778888888777999999999876553
No 139
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.99 E-value=1.4e-09 Score=90.99 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=81.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ .--+++|++++|+||||||||||+..+++... +..|.++++++.. .+.......+. +...+.. .+
T Consensus 22 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 22 ILNNI-SFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred eeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence 44444 45789999999999999999999999998653 5566667766532 12211111111 1101100 11
Q ss_pred cCcEEEE----ec-CCHHHHHHHHHhh------hcc------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 123 SDKIFIT----HC-YEFIDLKRTLESQ------SGF------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 123 ~~~i~~~----~~-~~~~~l~~~i~~~------~~~------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
.+++.+. .. .....+.+.+... ... ...+++++++|+.+.-.+.
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~------- 170 (225)
T PRK10247 98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDE------- 170 (225)
T ss_pred HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------
Confidence 1222110 00 0011111111110 000 1158899999999875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.+||+++|.....
T Consensus 171 ----~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 171 ----SNKHNVNEIIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred ----HHHHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence 2345677788888877799999999987644
No 140
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.99 E-value=1.3e-09 Score=92.24 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|+||||||||||+..+++... +..|.+++++..
T Consensus 17 il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 65 (243)
T TIGR02315 17 ALKNI-NLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTD 65 (243)
T ss_pred eeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEE
Confidence 34443 44789999999999999999999999998763 566777777653
No 141
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.99 E-value=1.2e-10 Score=103.69 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=82.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC--eEEEEECCCCC--CHH-HHHHHHHhCCCCCcc--
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK--GVLYICTESVF--PTA-RLAQLCELSPLAKPK-- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~--gvlyi~~e~~~--~~~-~~~~~~~~~~~~~~~-- 121 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +.. |.++++++... +.. +...++.+...+.+.
T Consensus 20 ~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 20 VLDDL-SLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 34444 44689999999999999999999999998763 666 78888776432 111 100111111111111
Q ss_pred ccCcEEEEe---cCCHHHHHHHHHhhhc---c------------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 122 CSDKIFITH---CYEFIDLKRTLESQSG---F------------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 122 ~~~~i~~~~---~~~~~~l~~~i~~~~~---~------------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
+.+|+.+.. ..+..+....+.+.++ + ...+++++++|+...-.+.
T Consensus 96 v~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~----- 170 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA----- 170 (362)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH-----
Confidence 222222110 0111111111111111 0 1158999999998875332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHc-CcEEEEeccccccc
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKH-RIVVICTNQVTSAM 208 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~-~~~vi~v~h~~~~~ 208 (279)
....++.+.|+++.++. +.|+|+++|.....
T Consensus 171 ------~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea 202 (362)
T TIGR03258 171 ------NIRANMREEIAALHEELPELTILCVTHDQDDA 202 (362)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 23355667777777776 89999999987754
No 142
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.99 E-value=1.2e-10 Score=104.09 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=84.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHH-HHHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTA-RLAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~-~~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+.+|++++|.||||||||||++.+++... +..|.++++++... +.. |...++.+...+.+. +.
T Consensus 29 ~l~~v-sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 29 VISNL-DLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 34443 44789999999999999999999999998773 66777888776432 111 111111111111111 23
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+|+.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+...-.+.
T Consensus 105 eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~------- 177 (375)
T PRK09452 105 ENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY------- 177 (375)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH-------
Confidence 3332211 011111111111111 10 1157899999998875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++.++.++++|+++|.....
T Consensus 178 ----~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea 208 (375)
T PRK09452 178 ----KLRKQMQNELKALQRKLGITFVFVTHDQEEA 208 (375)
T ss_pred ----HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2234577777888878899999999987654
No 143
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.99 E-value=4.4e-09 Score=81.93 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=87.4
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc---------ccCc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPLAKPK---------CSDK 125 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~---------~~~~ 125 (279)
-+.+|+.++|+||+|||||||+..+++.-. +.+|-+++.+... ++.+-...+.....++-.+ .++|
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlEN 108 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALEN 108 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhh
Confidence 578999999999999999999999988764 6677777777643 4444445554444443333 2344
Q ss_pred EEEEecC------C---------------------------HHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccch
Q psy2198 126 IFITHCY------E---------------------------FIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 126 i~~~~~~------~---------------------------~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
+.+.... + -++..-.+.+. ....|+++|-|+.+.-.+.
T Consensus 109 V~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA---fa~~P~vLfADEPTGNLD~------ 179 (228)
T COG4181 109 VALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA---FAGRPDVLFADEPTGNLDR------ 179 (228)
T ss_pred ccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH---hcCCCCEEeccCCCCCcch------
Confidence 4332111 0 11111122121 2368999999998864321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
..-.+++..|-.+.+++|.|+++++|...-..
T Consensus 180 -----~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~ 211 (228)
T COG4181 180 -----ATGDKIADLLFALNRERGTTLVLVTHDPQLAA 211 (228)
T ss_pred -----hHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH
Confidence 22345777777888899999999999876544
No 144
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3e-10 Score=99.18 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=39.3
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
+.|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.+++++.
T Consensus 21 ~~l~~v-sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~ 69 (305)
T PRK13651 21 KALDNV-SVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFK 69 (305)
T ss_pred cceeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEece
Confidence 355554 55789999999999999999999999999763 55677777654
No 145
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.98 E-value=2.7e-10 Score=94.62 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=39.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++++.
T Consensus 18 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 66 (216)
T TIGR00960 18 ALDNL-NFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQD 66 (216)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEe
Confidence 44444 45789999999999999999999999998763 566777887754
No 146
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.98 E-value=3.7e-09 Score=92.35 Aligned_cols=145 Identities=12% Similarity=0.171 Sum_probs=81.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC-CHHHHHHHH---HhCCCCCcc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF-PTARLAQLC---ELSPLAKPK--C 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~-~~~~~~~~~---~~~~~~~~~--~ 122 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.... ......+.+ .+...+... +
T Consensus 8 ~l~~v-s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 8 AVDGV-NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred EEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 44444 45789999999999999999999999998763 56677777765431 111111111 111111111 1
Q ss_pred cCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccch
Q psy2198 123 SDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 123 ~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
.+++.+.. ..+..+..+.+.+.+ .+ .-.+++++++|+.+.-.+.
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~------ 157 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP------ 157 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH------
Confidence 12211100 001111111111110 00 1158999999999875432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|+++++ .+.+||+++|......
T Consensus 158 -----~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 158 -----RTRRAIWDYIRALKE-EGVTILLTTHYMEEAD 188 (302)
T ss_pred -----HHHHHHHHHHHHHHh-CCCEEEEECCCHHHHH
Confidence 223456677777765 4999999999887654
No 147
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.98 E-value=3.2e-09 Score=92.85 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=84.7
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH-HHHHHHH---HhCCCCCcc--
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT-ARLAQLC---ELSPLAKPK-- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~-~~~~~~~---~~~~~~~~~-- 121 (279)
..|+.+ +--+++|++++|.||||+|||||++.+++... +..|.+++++...... ....+.+ .+...+...
T Consensus 21 ~~l~~v-sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 21 LVVDGL-SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred EEEecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 355555 55789999999999999999999999998773 6677778877654211 1111111 111111111
Q ss_pred ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 122 CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 122 ~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
+.+++.+.. ..+..+....+.+.+ .+ .-.+|+++++|+.+.-.+.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~----- 171 (306)
T PRK13537 97 VRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP----- 171 (306)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCH-----
Confidence 122221100 011111111111111 00 1268999999999975432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.....+.+.|+++.+ .|.|||+++|.......
T Consensus 172 ------~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~ 203 (306)
T PRK13537 172 ------QARHLMWERLRSLLA-RGKTILLTTHFMEEAER 203 (306)
T ss_pred ------HHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHH
Confidence 123456666777754 59999999999887653
No 148
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=4.4e-09 Score=88.78 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=38.4
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ +--+.+|++++|+||||||||||+..+++... +..|.+++++..
T Consensus 17 l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 64 (241)
T cd03256 17 LKDV-SLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTD 64 (241)
T ss_pred Eecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEe
Confidence 4443 44789999999999999999999999998763 566777777754
No 149
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.98 E-value=5.5e-09 Score=86.21 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=79.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHH---hCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE---LSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~---~~~~~~~~--~~ 123 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.++++++.........+.+. +...+... +.
T Consensus 15 ~l~~~-~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 15 VLDDI-SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 34433 34688999999999999999999999998763 566777777764322111111111 11111100 11
Q ss_pred CcEEEE---ecCCHHHHHHHHHhh-----hc-----c-------------CCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 124 DKIFIT---HCYEFIDLKRTLESQ-----SG-----F-------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 124 ~~i~~~---~~~~~~~l~~~i~~~-----~~-----~-------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
+++.+. ...+...+.+.+... .. + .-.+++++++|+.+.-.+.
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~----------- 159 (208)
T cd03268 91 ENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP----------- 159 (208)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH-----------
Confidence 111110 000111111111110 00 0 1258899999999875432
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++++ .+.++|+++|.....
T Consensus 160 ~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~ 189 (208)
T cd03268 160 DGIKELRELILSLRD-QGITVLISSHLLSEI 189 (208)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH
Confidence 123456677777776 689999999987654
No 150
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=4.8e-09 Score=88.14 Aligned_cols=143 Identities=12% Similarity=0.157 Sum_probs=81.3
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHH---HHHH---HhCCCCCcc
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARL---AQLC---ELSPLAKPK 121 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~---~~~~---~~~~~~~~~ 121 (279)
|+.+ .--+++|++++|+||||||||||+..+++... +..|.+++++.... +.... .+.+ .+...+...
T Consensus 21 l~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 21 LKDV-SLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 4443 44789999999999999999999999998763 56677777766431 11111 1111 111111110
Q ss_pred --ccCcEEEE---ecCCH----HHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 122 --CSDKIFIT---HCYEF----IDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 122 --~~~~i~~~---~~~~~----~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
+.+++.+. ..... ....+.+.. ..+ .-.+++++++|+.+.-.+.
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~-- 173 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLEL-VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP-- 173 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-CCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCH--
Confidence 11111110 00010 011111111 000 1158899999999875432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.+||+++|.....
T Consensus 174 ---------~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~ 204 (233)
T cd03258 174 ---------ETTQSILALLRDINRELGLTIVLITHEMEVV 204 (233)
T ss_pred ---------HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 2335677778888777799999999987654
No 151
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=5.1e-09 Score=89.93 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=37.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.||||||||||+..+++... +..|.++++++.
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~ 87 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQD 87 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEE
Confidence 44689999999999999999999999998763 566777887754
No 152
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3.7e-10 Score=97.89 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=40.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||||||||++.+++... +..|.+++++..
T Consensus 21 ~l~~v-sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 69 (288)
T PRK13643 21 ALFDI-DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIV 69 (288)
T ss_pred ceeee-EEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEE
Confidence 45544 55789999999999999999999999998763 667778887764
No 153
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3.6e-10 Score=97.94 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=41.0
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
+.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.+++++...
T Consensus 21 ~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~ 71 (287)
T PRK13637 21 KALDNV-NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDI 71 (287)
T ss_pred ceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEEC
Confidence 345554 55789999999999999999999999998763 6677788877643
No 154
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=2.3e-10 Score=102.51 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=83.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHH-HHHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTA-RLAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~-~~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+.+|++++|.||||||||||++.+++... +..|.++++++... +.. +...++.+...+.+. +.
T Consensus 34 ~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 34 AVDDV-SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 34443 44689999999999999999999999998874 66778888876431 111 101111111111111 33
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+|+.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+...-.+.
T Consensus 110 eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~------- 182 (377)
T PRK11607 110 QNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDK------- 182 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------
Confidence 3333211 111122222222111 11 1158899999998775432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++.++.+.|+|+++|.....
T Consensus 183 ----~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea 213 (377)
T PRK11607 183 ----KLRDRMQLEVVDILERVGVTCVMVTHDQEEA 213 (377)
T ss_pred ----HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 1224455667777777899999999987654
No 155
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=8.7e-10 Score=93.03 Aligned_cols=43 Identities=30% Similarity=0.399 Sum_probs=35.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.--+.+|++++|.||||+|||||+..+++... +..|.+++++.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~ 64 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGE 64 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCE
Confidence 44689999999999999999999999998763 55666676654
No 156
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.97 E-value=2.1e-09 Score=89.08 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=79.7
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC--HHH-HHHHHHhCCCCCc--cccC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP--TAR-LAQLCELSPLAKP--KCSD 124 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~--~~~-~~~~~~~~~~~~~--~~~~ 124 (279)
|+.+ .--+.+|++++|.|+||+|||||++.+++... +..|.+++++..... ..+ ...++.+...+.. .+.+
T Consensus 16 l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 16 LDDL-NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eece-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 4443 44689999999999999999999999998763 556666666543211 000 0000011100100 0111
Q ss_pred cEEEE---ecCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 125 KIFIT---HCYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 125 ~i~~~---~~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
++.+. ......+..+.+.+.+ .+ .-.+++++++|+.+.-.+.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~-------- 163 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA-------- 163 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH--------
Confidence 11110 0011111111111100 00 1157899999999875432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.+||+++|.....
T Consensus 164 ---~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 164 ---KLRVQMRAELKRLQQRLGTTTIYVTHDQVEA 194 (213)
T ss_pred ---HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 2345677888888877799999999987654
No 157
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=4.1e-10 Score=96.96 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=82.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHH---hCC--CCC-c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCE---LSP--LAK-P 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~---~~~--~~~-~ 120 (279)
.|+.+ +--+.+|++++|.|+||||||||+..+++... +..|.+++++.... +...+.+.+. +.. .+. .
T Consensus 20 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 20 ALKGL-SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 45444 45789999999999999999999999998763 56677777775431 1222211111 110 000 0
Q ss_pred cccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccccc
Q psy2198 121 KCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 121 ~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
.+.+++.+.. ..+..+..+.+.+.+ .+ ...+++++++|+.+...+.
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~---- 171 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP---- 171 (274)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCH----
Confidence 1222222210 011111111111111 10 1158999999999875432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++ +.|||+++|.....
T Consensus 172 -------~~~~~l~~~l~~~~~~-g~tili~tH~~~~~ 201 (274)
T PRK13647 172 -------RGQETLMEILDRLHNQ-GKTVIVATHDVDLA 201 (274)
T ss_pred -------HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 2234577777777654 89999999987754
No 158
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.96 E-value=7.5e-09 Score=85.23 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.||||+|||||+..+++... +..|.++++++.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 61 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKE 61 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEE
Confidence 44688999999999999999999999998763 566777777764
No 159
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.96 E-value=8e-10 Score=93.08 Aligned_cols=140 Identities=14% Similarity=0.217 Sum_probs=79.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHH--HHHhCCCCCcc--ccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQ--LCELSPLAKPK--CSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~--~~~~~~~~~~~--~~~~i~~ 128 (279)
.--+.+|++++|.|+||||||||++.+++... +..|.++++++... +...... ++.+...+... +.+++.+
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 97 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRY 97 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHH
Confidence 34689999999999999999999999998763 56677777665321 1111111 11111111010 1122111
Q ss_pred E---ecCCH----HHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 129 T---HCYEF----IDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 129 ~---~~~~~----~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
. ..... ....+.+.. ..+ .-.+++++++|+.+.-.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~----------- 165 (236)
T TIGR03864 98 HAALHGLSRAEARERIAALLAR-LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDP----------- 165 (236)
T ss_pred HHHhcCCCHHHHHHHHHHHHHH-cCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH-----------
Confidence 0 00010 111111111 000 1158899999999875432
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.++|+++|......
T Consensus 166 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 166 ASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 23356777888887667999999999876653
No 160
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=5.7e-09 Score=94.05 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=83.2
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCC-------CCc
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPL-------AKP 120 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~-------~~~ 120 (279)
|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++++.. .+...+........+ +.+
T Consensus 44 L~~i-sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 44 VKDA-SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEeE-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 4444 44689999999999999999999999998873 6677788877643 222222111111111 111
Q ss_pred c--ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 121 K--CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 121 ~--~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
. +.+++.+.. ..+..+..+.+.+.+ .+ ...+++++++|+.+.-.+.
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~-- 197 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP-- 197 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH--
Confidence 0 222221110 011111111111111 00 1158999999999875432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++.++.+.|||+++|.....
T Consensus 198 ---------~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~ 228 (400)
T PRK10070 198 ---------LIRTEMQDELVKLQAKHQRTIVFISHDLDEA 228 (400)
T ss_pred ---------HHHHHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 2234566777777777899999999987654
No 161
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=2.2e-09 Score=92.60 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=83.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHH---hCCC--C-Cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCE---LSPL--A-KP 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~---~~~~--~-~~ 120 (279)
.|+.+ .--+++|++++|.|+||+|||||+..+++... +..|.+++++.... +...+...+. +... + ..
T Consensus 19 ~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 19 ALNNI-NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred eeeEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 44444 44789999999999999999999999998763 66777788776432 1112111111 1100 0 00
Q ss_pred cccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccccc
Q psy2198 121 KCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 121 ~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
.+.+++.+.. ..+.....+.+.+.+ .+ .-.+++++++|+.+.-.+.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~---- 170 (277)
T PRK13652 95 TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP---- 170 (277)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH----
Confidence 1222221110 011111111111111 00 1158999999999875432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|+++.++++.|||+++|......
T Consensus 171 -------~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 171 -------QGVKELIDFLNDLPETYGMTVIFSTHQLDLVP 202 (277)
T ss_pred -------HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 22345777788877767999999999987653
No 162
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.96 E-value=8.5e-10 Score=90.12 Aligned_cols=138 Identities=14% Similarity=0.239 Sum_probs=77.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCeEEEEECCCCCCHHHHHHHH---HhCCCCCc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL--QVSQPHKGVLYICTESVFPTARLAQLC---ELSPLAKP--K 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~--~~~~~~~gvlyi~~e~~~~~~~~~~~~---~~~~~~~~--~ 121 (279)
.|+.+ .--+.+|++++|.|++|+|||||+..+++.. . +..|.++++++.... ....+.+ .+...+.. .
T Consensus 24 ~l~~~-~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~-~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 24 LLKNV-SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDK-RSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ceecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCch-HhhhheEEEccCcccCCCCCc
Confidence 44444 4578999999999999999999999999876 4 556677777764321 1111100 00000000 0
Q ss_pred ccCcEEEEe---cCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcE
Q psy2198 122 CSDKIFITH---CYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIV 197 (279)
Q Consensus 122 ~~~~i~~~~---~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~ 197 (279)
+.+++.+.. ..+..+... .+... ...+++++++|+.+.-.+. .....+.+.|+++.+ .+.+
T Consensus 99 ~~~~i~~~~~~~~LS~G~~qrv~lara---l~~~p~illlDEP~~~LD~-----------~~~~~l~~~l~~~~~-~~~t 163 (194)
T cd03213 99 VRETLMFAAKLRGLSGGERKRVSIALE---LVSNPSLLFLDEPTSGLDS-----------SSALQVMSLLRRLAD-TGRT 163 (194)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH---HHcCCCEEEEeCCCcCCCH-----------HHHHHHHHHHHHHHh-CCCE
Confidence 111111000 112111111 11111 2258899999999875432 123456666777654 4899
Q ss_pred EEEeccccc
Q psy2198 198 VICTNQVTS 206 (279)
Q Consensus 198 vi~v~h~~~ 206 (279)
+|+++|...
T Consensus 164 iii~sh~~~ 172 (194)
T cd03213 164 IICSIHQPS 172 (194)
T ss_pred EEEEecCch
Confidence 999999764
No 163
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=2.3e-09 Score=92.74 Aligned_cols=146 Identities=14% Similarity=0.229 Sum_probs=84.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC----CHHHHHHHHH---hCC--C-C
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF----PTARLAQLCE---LSP--L-A 118 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~----~~~~~~~~~~---~~~--~-~ 118 (279)
.|+.+ +--+++|++++|.|+||+|||||++.+++... +..|.++++++... ....+...+. +.. . +
T Consensus 21 ~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 21 ALKGI-NINIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 45444 45789999999999999999999999998763 66677788776431 1111111111 110 0 0
Q ss_pred CccccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 119 KPKCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 119 ~~~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
...+.+++.+.. ..+..+....+...+ .+ ...+|+++++|+.+...+.
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~-- 174 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-- 174 (283)
T ss_pred cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH--
Confidence 001222221110 011111111111111 10 1158999999999875432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.|||+++|......
T Consensus 175 ---------~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~ 206 (283)
T PRK13636 175 ---------MGVSEIMKLLVEMQKELGLTIIIATHDIDIVP 206 (283)
T ss_pred ---------HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 23345777788887777999999999887654
No 164
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.95 E-value=6.2e-10 Score=93.98 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=39.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.+++++..
T Consensus 16 il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 64 (240)
T PRK09493 16 VLHNI-DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLK 64 (240)
T ss_pred Eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 34444 45789999999999999999999999998763 566778887754
No 165
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.95 E-value=3.9e-10 Score=94.92 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=36.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||||||||+..+++... +..|.+++++..
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 63 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGED 63 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEE
Confidence 34689999999999999999999999998763 566777777653
No 166
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=6.7e-10 Score=93.48 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=38.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++..
T Consensus 15 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~ 63 (235)
T cd03261 15 VLKGV-DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGED 63 (235)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 34443 44689999999999999999999999998763 566777777653
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=2.9e-09 Score=91.49 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=39.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.||||+|||||++.+++... +..|.+++++..
T Consensus 24 ~l~~i-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~ 72 (269)
T PRK13648 24 TLKDV-SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQA 72 (269)
T ss_pred ceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEE
Confidence 34443 44689999999999999999999999998763 566778887764
No 168
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.95 E-value=2.8e-09 Score=87.51 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=37.6
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 16 l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 63 (201)
T cd03231 16 FSGL-SFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGP 63 (201)
T ss_pred eccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence 4443 33688999999999999999999999998763 556667776654
No 169
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=1.9e-09 Score=90.58 Aligned_cols=140 Identities=11% Similarity=0.128 Sum_probs=80.7
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHH---HHHhCCCCCc--cccCcEEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQ---LCELSPLAKP--KCSDKIFIT 129 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~---~~~~~~~~~~--~~~~~i~~~ 129 (279)
.-.+.+|++++|+|+||||||||+..+++... +..|.++++++.......... ++.+...+.. .+.+++.+.
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 34688999999999999999999999998763 566777777654211100000 1111111111 122222211
Q ss_pred e-c---CC---HHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHHH
Q psy2198 130 H-C---YE---FIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAH 178 (279)
Q Consensus 130 ~-~---~~---~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~ 178 (279)
. . .. ...+.+.+.. ..+ ...+++++++|+.+.-.+. .
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~-----------~ 163 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQ-MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP-----------A 163 (232)
T ss_pred cccccCCCHHHHHHHHHHHHH-cCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-----------H
Confidence 0 0 00 0111111111 100 1258999999999875432 2
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 179 DMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 179 ~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....+.+.|++++++.+.++|+++|......
T Consensus 164 ~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 164 LRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3356777788887777999999999887653
No 170
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=5.9e-09 Score=92.56 Aligned_cols=146 Identities=14% Similarity=0.212 Sum_probs=84.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHH------hCCCCCc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCE------LSPLAKP 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~------~~~~~~~ 120 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++.... +...+..... +...+.+
T Consensus 20 il~~v-sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 20 ALNNV-SLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 44444 45789999999999999999999999998763 66777777765431 2221111111 1111111
Q ss_pred c--ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 121 K--CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 121 ~--~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
. +.+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+.+.-.+.
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~-- 173 (343)
T PRK11153 96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP-- 173 (343)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH--
Confidence 0 112211100 001111111111100 00 1158999999999875432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.|||+++|......
T Consensus 174 ---------~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~ 205 (343)
T PRK11153 174 ---------ATTRSILELLKDINRELGLTIVLITHEMDVVK 205 (343)
T ss_pred ---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23356778888888777999999999887643
No 171
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=4.6e-10 Score=98.61 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=39.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ +--+++|++++|+|+||||||||+..+++... +..|.+++++.
T Consensus 41 ~L~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~ 88 (320)
T PRK13631 41 ALNNI-SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDI 88 (320)
T ss_pred ceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCE
Confidence 56555 55799999999999999999999999998873 66777788764
No 172
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.94 E-value=1.1e-08 Score=79.46 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCH
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEF 134 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (279)
.--+++|++++|.|++|+|||||++.+++... +..|.+++++.. .+.+....+.
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-----------------------~i~~~~~lS~ 73 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-----------------------KIGYFEQLSG 73 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-----------------------EEEEEccCCH
Confidence 34689999999999999999999999998763 566777776530 1222222444
Q ss_pred HHHHH--HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 135 IDLKR--TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 135 ~~l~~--~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.+... ..+.+ ..+++++++|+...-.+.. ....+.+.|+++ +.++|+++|.....
T Consensus 74 G~~~rv~laral----~~~p~illlDEP~~~LD~~-----------~~~~l~~~l~~~----~~til~~th~~~~~ 130 (144)
T cd03221 74 GEKMRLALAKLL----LENPNLLLLDEPTNHLDLE-----------SIEALEEALKEY----PGTVILVSHDRYFL 130 (144)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEeCCccCCCHH-----------HHHHHHHHHHHc----CCEEEEEECCHHHH
Confidence 33322 22232 2588999999998754321 223344555543 57999999876544
No 173
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=4.1e-10 Score=97.56 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=41.3
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+.|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.+++++..
T Consensus 21 ~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~ 70 (286)
T PRK13646 21 QAIHDV-NTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDIT 70 (286)
T ss_pred Cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEE
Confidence 356665 56799999999999999999999999998763 667778887754
No 174
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.94 E-value=4.8e-10 Score=92.95 Aligned_cols=48 Identities=29% Similarity=0.413 Sum_probs=38.2
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.++++++.
T Consensus 17 l~~~-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 64 (214)
T cd03292 17 LDGI-NISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQD 64 (214)
T ss_pred eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEE
Confidence 4433 44689999999999999999999999998763 566777777654
No 175
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.93 E-value=2.4e-09 Score=85.19 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=72.2
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCC-ccccCcEEE
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK-PKCSDKIFI 128 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 128 (279)
|+.+ .--+.+|++++|.|++|||||||++.+++... +..|.+++++... ..++.+...+. ..+.+++.+
T Consensus 17 l~~i-~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~------i~~~~q~~~~~~~tv~~nl~~ 86 (166)
T cd03223 17 LKDL-SFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGED------LLFLPQRPYLPLGTLREQLIY 86 (166)
T ss_pred eecC-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCce------EEEECCCCccccccHHHHhhc
Confidence 4443 44689999999999999999999999998763 4555555544211 00000000000 012233322
Q ss_pred --EecCCHHHHH--HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 129 --THCYEFIDLK--RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 129 --~~~~~~~~l~--~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
....+..+.. ...+.+ -.+++++++|+.+.-.+.. ....+.+.|+++ +.++|+++|.
T Consensus 87 ~~~~~LS~G~~~rv~laral----~~~p~~lllDEPt~~LD~~-----------~~~~l~~~l~~~----~~tiiivsh~ 147 (166)
T cd03223 87 PWDDVLSGGEQQRLAFARLL----LHKPKFVFLDEATSALDEE-----------SEDRLYQLLKEL----GITVISVGHR 147 (166)
T ss_pred cCCCCCCHHHHHHHHHHHHH----HcCCCEEEEECCccccCHH-----------HHHHHHHHHHHh----CCEEEEEeCC
Confidence 1223332222 222222 2588999999998754321 123344555543 6899999988
Q ss_pred cc
Q psy2198 205 TS 206 (279)
Q Consensus 205 ~~ 206 (279)
..
T Consensus 148 ~~ 149 (166)
T cd03223 148 PS 149 (166)
T ss_pred hh
Confidence 54
No 176
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.93 E-value=1e-09 Score=90.85 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=36.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 63 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLK 63 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEE
Confidence 34689999999999999999999999998763 566667776653
No 177
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.93 E-value=5.7e-09 Score=89.08 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=36.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+--+.+|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 69 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRD 69 (258)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcc
Confidence 34689999999999999999999999998763 566777777764
No 178
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.93 E-value=6.6e-10 Score=93.29 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=38.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.++++++.
T Consensus 15 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 63 (232)
T cd03218 15 VVNGV-SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQD 63 (232)
T ss_pred eeccc-eeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence 34443 44689999999999999999999999998763 566777777654
No 179
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.93 E-value=3.6e-09 Score=89.88 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=74.7
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC---------CCCCH---HHHHHHHHhCCCCCcc--
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE---------SVFPT---ARLAQLCELSPLAKPK-- 121 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e---------~~~~~---~~~~~~~~~~~~~~~~-- 121 (279)
--+++|++++|.|+||+|||||++.+++... +..|.++++.. ..+.. ..+............+
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~ 101 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDI 101 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHH
Confidence 3689999999999999999999999998763 44454443321 11100 0111111000000000
Q ss_pred --ccCcEEE-------EecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy2198 122 --CSDKIFI-------THCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191 (279)
Q Consensus 122 --~~~~i~~-------~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la 191 (279)
..+.+-+ ....+..+... .+... .-.+++++++|+.+.-.+. .....+.+.|++++
T Consensus 102 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lara---l~~~p~lllLDEPt~~LD~-----------~~~~~l~~~L~~~~ 167 (251)
T PRK09544 102 LPALKRVQAGHLIDAPMQKLSGGETQRVLLARA---LLNRPQLLVLDEPTQGVDV-----------NGQVALYDLIDQLR 167 (251)
T ss_pred HHHHHHcCChHHHhCChhhCCHHHHHHHHHHHH---HhcCCCEEEEeCCCcCCCH-----------HHHHHHHHHHHHHH
Confidence 0000000 01111111111 11111 2258899999999875432 22345777788887
Q ss_pred HHcCcEEEEecccccccC
Q psy2198 192 IKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 192 ~~~~~~vi~v~h~~~~~~ 209 (279)
++.+.+||+++|......
T Consensus 168 ~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 168 RELDCAVLMVSHDLHLVM 185 (251)
T ss_pred HhcCCEEEEEecCHHHHH
Confidence 767999999999887653
No 180
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.92 E-value=4.4e-10 Score=93.12 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=38.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|+||||||||||+..+++... +..|.+++++..
T Consensus 14 ~l~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~ 62 (213)
T cd03235 14 VLEDV-SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKP 62 (213)
T ss_pred eeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCcc
Confidence 34444 44789999999999999999999999998763 556667777653
No 181
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.92 E-value=3.6e-10 Score=94.00 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=37.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.|+||||||||++.+++... +..|.+++++..
T Consensus 21 l~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 68 (218)
T cd03266 21 VDGV-SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFD 68 (218)
T ss_pred ecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEE
Confidence 4443 34689999999999999999999999998763 556677776653
No 182
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.92 E-value=1e-09 Score=90.86 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=36.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.||||+|||||++.+++... +..|.++++++.
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 64 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKD 64 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEE
Confidence 34688999999999999999999999998763 566777777653
No 183
>KOG0058|consensus
Probab=98.92 E-value=6.6e-09 Score=97.06 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=47.3
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHH
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQL 111 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~ 111 (279)
+.|+.+ +--++||++++++||+|+||||++..+-..+. |.+|.+.+|+.+. ++...+.+.
T Consensus 482 ~Vlk~l-sfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 482 PVLKNL-SFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred hhhcCc-eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHHHHH
Confidence 345544 45899999999999999999999999998884 8888999999865 444444443
No 184
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.92 E-value=4.2e-10 Score=100.75 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=81.0
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--ccC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CSD 124 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~~ 124 (279)
|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++++... +..+ ...++.+...+.+. +.+
T Consensus 19 l~~v-sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 19 SKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred Eeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 4443 34688999999999999999999999998763 56677777665321 1110 00011111111111 222
Q ss_pred cEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 125 KIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 125 ~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
++.+.. ..+..+..+.+.+.+ .+ ...+++++++|+.+.-.+.
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~-------- 166 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-------- 166 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH--------
Confidence 222110 011111111111111 00 1158999999998875432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+...|+++.++.+.++|+++|.....
T Consensus 167 ---~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~ 197 (369)
T PRK11000 167 ---ALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197 (369)
T ss_pred ---HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence 2234566777788777899999999987654
No 185
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.92 E-value=4.7e-09 Score=89.28 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=36.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|+|+||||||||++.+++... +..|.++++++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 63 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQ 63 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 44689999999999999999999999998763 566767776653
No 186
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=3.4e-09 Score=91.44 Aligned_cols=146 Identities=13% Similarity=0.192 Sum_probs=84.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC--HHHHHHHH---HhCCC--C-Cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP--TARLAQLC---ELSPL--A-KP 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~--~~~~~~~~---~~~~~--~-~~ 120 (279)
.|+.+ .--+.+|++++|+|++|+|||||+..+++... +..|.++++++...+ ...+.+.+ .+... + ..
T Consensus 22 ~l~~v-~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 22 QLNGV-SFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 45544 45789999999999999999999999998874 566777777764321 11111111 11100 0 00
Q ss_pred cccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccccc
Q psy2198 121 KCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 121 ~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
.+.+++.+.. ..+..++.+.+.... .+ ...+++++++|+.+...+.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~---- 173 (277)
T PRK13642 98 TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP---- 173 (277)
T ss_pred CHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH----
Confidence 1222222110 111112111111111 00 1148899999998875432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++++.+||+++|......
T Consensus 174 -------~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 174 -------TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA 205 (277)
T ss_pred -------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23356777888888778999999999877653
No 187
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=1.6e-09 Score=88.41 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=76.8
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHH---hCCCCCc--cccC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE---LSPLAKP--KCSD 124 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~---~~~~~~~--~~~~ 124 (279)
|+.+ .--+.+|++++|.|+||+|||||+..+++.... ++..|.++++++... ......+. +...+.. .+.+
T Consensus 23 l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~--~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 23 LNNI-SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLD--KNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred EEcc-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehH--HHhhhceEEecccCccccCCcHHH
Confidence 4443 446899999999999999999999999976421 245667777776431 11111110 0000000 0111
Q ss_pred cEEEEe---cCCHHHHHH--HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEE
Q psy2198 125 KIFITH---CYEFIDLKR--TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVI 199 (279)
Q Consensus 125 ~i~~~~---~~~~~~l~~--~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi 199 (279)
++.+.. ..+..+... ..+. ...+++++++|+...-.+. .....+.+.|+++++ .+.++|
T Consensus 99 ~l~~~~~~~~LSgGe~qrv~la~a----l~~~p~vlllDEP~~~LD~-----------~~~~~l~~~l~~~~~-~~~tii 162 (192)
T cd03232 99 ALRFSALLRGLSVEQRKRLTIGVE----LAAKPSILFLDEPTSGLDS-----------QAAYNIVRFLKKLAD-SGQAIL 162 (192)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHH----HhcCCcEEEEeCCCcCCCH-----------HHHHHHHHHHHHHHH-cCCEEE
Confidence 111100 111111111 1111 2358899999999875432 223456667777665 589999
Q ss_pred Eeccccc
Q psy2198 200 CTNQVTS 206 (279)
Q Consensus 200 ~v~h~~~ 206 (279)
+++|...
T Consensus 163 ivtH~~~ 169 (192)
T cd03232 163 CTIHQPS 169 (192)
T ss_pred EEEcCCh
Confidence 9999865
No 188
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=3.7e-09 Score=91.39 Aligned_cols=146 Identities=13% Similarity=0.185 Sum_probs=83.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC--eEEEEECCCCCC--HHHHHHHHH---hCCC--C-
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK--GVLYICTESVFP--TARLAQLCE---LSPL--A- 118 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~--gvlyi~~e~~~~--~~~~~~~~~---~~~~--~- 118 (279)
.|+.+ .--+++|++++|.|+||||||||+..+++... +..+ |.++++++.... ...+...+. +... +
T Consensus 22 ~l~~v-~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~--p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 22 ALNDI-SFSIPRGSWTALIGHNGSGKSTISKLINGLLL--PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred ceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence 44444 45789999999999999999999999998874 2332 678887764321 111111111 1000 0
Q ss_pred CccccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 119 KPKCSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 119 ~~~~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
...+.+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+.+.-.+.
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~-- 176 (282)
T PRK13640 99 GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP-- 176 (282)
T ss_pred cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH--
Confidence 001223332210 111111111111111 00 1158999999999875432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.+||+++|.....
T Consensus 177 ---------~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 177 ---------AGKEQILKLIRKLKKKNNLTVISITHDIDEA 207 (282)
T ss_pred ---------HHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 2335677788888777799999999987654
No 189
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.91 E-value=1.2e-08 Score=84.21 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=79.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHH---HHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQL---CELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~---~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.++++++...... .... +.+...+... +.
T Consensus 17 ~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 17 LFSGL-SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPD-VAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred EEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchh-hHhhcEEecCCCcCCCCCcHH
Confidence 34444 44789999999999999999999999998763 55666777665421111 1111 1111111100 11
Q ss_pred CcEEEEe---cCCHHHHHHHHHhh-----hc-----c-------------CCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQ-----SG-----F-------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~-----~~-----~-------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
+++.+.. ......+.+.+... .. + .-.+++++++|+.+.-.+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~----------- 160 (207)
T PRK13539 92 ENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA----------- 160 (207)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-----------
Confidence 2211100 00111111111110 00 0 1257899999999875432
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|+++++ .+.++|+++|......
T Consensus 161 ~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 161 AAVALFAELIRAHLA-QGGIVIAATHIPLGLP 191 (207)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCchhhc
Confidence 223456777777765 4999999999887655
No 190
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.91 E-value=3.3e-09 Score=99.75 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=80.2
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc--------ccCcEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK--------CSDKIF 127 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~i~ 127 (279)
--+++|+.++|+||+|||||||+..+++.+. +..|.+++++.+..+. ...+ .+..++-++ +.+|+.
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~--~~~l-r~~i~~V~Q~~~lF~~TI~eNI~ 429 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSL--QDEL-RRRISVFAQDAHLFDTTVRDNLR 429 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhH--HHHH-HhheEEEccCcccccccHHHHHh
Confidence 3789999999999999999999999998874 6778888887653211 1222 222222111 455665
Q ss_pred EEec-CCHHHHHHHHHhhh-----c-c----------------------------CCCCeeEEEEeCcchhhccccccch
Q psy2198 128 ITHC-YEFIDLKRTLESQS-----G-F----------------------------IENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 128 ~~~~-~~~~~l~~~i~~~~-----~-~----------------------------~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
+..+ .+.+++.+.++..- . . .-.+++++++|+.++-.+..
T Consensus 430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~----- 504 (529)
T TIGR02868 430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAG----- 504 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH-----
Confidence 5432 34444444333210 0 0 11588999999998754321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
.-..+.+.|.++. .+.|+|+++|-
T Consensus 505 ------te~~I~~~l~~~~--~~~TvIiItHr 528 (529)
T TIGR02868 505 ------TESELLEDLLAAL--SGKTVVVITHH 528 (529)
T ss_pred ------HHHHHHHHHHHhc--CCCEEEEEecC
Confidence 1234555555442 58999999983
No 191
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=8.5e-10 Score=95.06 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=39.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 17 ~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~ 65 (275)
T PRK13639 17 ALKGI-NFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEP 65 (275)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEE
Confidence 44444 45789999999999999999999999998763 566777777754
No 192
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.91 E-value=1.1e-08 Score=85.76 Aligned_cols=146 Identities=12% Similarity=0.175 Sum_probs=82.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHH---HHHhCCCCCcc-
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQ---LCELSPLAKPK- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~---~~~~~~~~~~~- 121 (279)
.|+.+ .--+.+|++++|+|+||||||||+..+++... +..|.++++++... +... ..+ ++.+...+...
T Consensus 15 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 15 ILRGV-SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred Eecce-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 44444 45789999999999999999999999998763 55666777765321 1111 111 11111111111
Q ss_pred -ccCcEEEE---ecCC----HHHHHHHHH---hhhcc------------------CCCCeeEEEEeCcchhhccccccch
Q psy2198 122 -CSDKIFIT---HCYE----FIDLKRTLE---SQSGF------------------IENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 122 -~~~~i~~~---~~~~----~~~l~~~i~---~~~~~------------------~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
+.+++.+. .... ..++...+. ..... ...+++++++|+.+.-.+.
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~------ 164 (230)
T TIGR03410 91 TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP------ 164 (230)
T ss_pred cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH------
Confidence 11111110 0001 111121111 10000 1158999999999875432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|.+++++.+.++|+++|......
T Consensus 165 -----~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 196 (230)
T TIGR03410 165 -----SIIKDIGRVIRRLRAEGGMAILLVEQYLDFAR 196 (230)
T ss_pred -----HHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 22345667777777667899999999887654
No 193
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.90 E-value=1.2e-09 Score=90.60 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=38.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.+++++..
T Consensus 17 il~~i-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~ 65 (214)
T TIGR02673 17 ALHDV-SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGED 65 (214)
T ss_pred eecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEE
Confidence 34444 45789999999999999999999999998763 566777776653
No 194
>PRK10908 cell division protein FtsE; Provisional
Probab=98.90 E-value=8.8e-10 Score=91.94 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=38.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.+++++..
T Consensus 17 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 65 (222)
T PRK10908 17 ALQGV-TFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHD 65 (222)
T ss_pred EEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 34444 44789999999999999999999999998763 566777777653
No 195
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.90 E-value=2.2e-08 Score=84.84 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=76.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC--------C-CCHHHHHHHHHhC-CCCCc----
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES--------V-FPTARLAQLCELS-PLAKP---- 120 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~--------~-~~~~~~~~~~~~~-~~~~~---- 120 (279)
.|-+.+|++++|.|+||||||||+..+++... +..|.+++++.. . .....+.+.+... .....
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 95 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYF 95 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHH
Confidence 45688999999999999999999999988763 444544444321 0 0000111111100 00000
Q ss_pred --cccCcEEE-------EecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHH
Q psy2198 121 --KCSDKIFI-------THCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHEL 190 (279)
Q Consensus 121 --~~~~~i~~-------~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l 190 (279)
+..+.+-+ ....+-.+... .+... ...+++++++|+.+...+. .....+.+.|+++
T Consensus 96 ~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iara---L~~~p~llllDEPt~~LD~-----------~~~~~l~~~l~~~ 161 (246)
T cd03237 96 KTEIAKPLQIEQILDREVPELSGGELQRVAIAAC---LSKDADIYLLDEPSAYLDV-----------EQRLMASKVIRRF 161 (246)
T ss_pred HHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHH---HhcCCCEEEEeCCcccCCH-----------HHHHHHHHHHHHH
Confidence 00111100 01112111111 11111 2258899999999985432 2345677888888
Q ss_pred HHHcCcEEEEecccccccC
Q psy2198 191 SIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 191 a~~~~~~vi~v~h~~~~~~ 209 (279)
+++.+.+||+++|......
T Consensus 162 ~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 162 AENNEKTAFVVEHDIIMID 180 (246)
T ss_pred HHhcCCEEEEEeCCHHHHH
Confidence 8778999999999976554
No 196
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.89 E-value=5.5e-09 Score=85.73 Aligned_cols=139 Identities=16% Similarity=0.222 Sum_probs=79.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCcc-----
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPK----- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~----- 121 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++.... .+..|.++++++... +..... ....++-++
T Consensus 15 ~l~~i-s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~p~~G~i~~~g~~~~~~~~~~~~---~~~i~~v~q~~~~~ 89 (200)
T cd03217 15 ILKGV-NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY-EVTEGEILFKGEDITDLPPEERA---RLGIFLAFQYPPEI 89 (200)
T ss_pred eeecc-ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCccEEEECCEECCcCCHHHHh---hCcEEEeecChhhc
Confidence 34433 457899999999999999999999999987411 245667777776432 111111 111111000
Q ss_pred ----ccCcE-EEEecCCHHHHHH--HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHc
Q psy2198 122 ----CSDKI-FITHCYEFIDLKR--TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKH 194 (279)
Q Consensus 122 ----~~~~i-~~~~~~~~~~l~~--~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~ 194 (279)
..+.+ .+....+..+... ..+. .-.+++++++|+.+.-.+. .....+.+.|+++++ .
T Consensus 90 ~~~~~~~~l~~~~~~LS~G~~qrv~lara----l~~~p~illlDEPt~~LD~-----------~~~~~l~~~L~~~~~-~ 153 (200)
T cd03217 90 PGVKNADFLRYVNEGFSGGEKKRNEILQL----LLLEPDLAILDEPDSGLDI-----------DALRLVAEVINKLRE-E 153 (200)
T ss_pred cCccHHHHHhhccccCCHHHHHHHHHHHH----HhcCCCEEEEeCCCccCCH-----------HHHHHHHHHHHHHHH-C
Confidence 00100 0001222222211 1112 2358899999999875432 123456777777764 5
Q ss_pred CcEEEEeccccccc
Q psy2198 195 RIVVICTNQVTSAM 208 (279)
Q Consensus 195 ~~~vi~v~h~~~~~ 208 (279)
+.++|+++|.....
T Consensus 154 ~~tiii~sh~~~~~ 167 (200)
T cd03217 154 GKSVLIITHYQRLL 167 (200)
T ss_pred CCEEEEEecCHHHH
Confidence 89999999887644
No 197
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.89 E-value=7e-10 Score=92.47 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .-.+.+|++++|+||||||||||+..+++... +..|.+++++..
T Consensus 15 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 63 (222)
T cd03224 15 ILFGV-SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRD 63 (222)
T ss_pred Eeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEE
Confidence 34443 44789999999999999999999999988763 566777777653
No 198
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.89 E-value=2.3e-09 Score=88.24 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=36.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~ 64 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEP 64 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEE
Confidence 44789999999999999999999999998763 566667776653
No 199
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=1.1e-09 Score=90.47 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=36.0
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
--+.+|++++|.|+||||||||+..+++... +..|.++++++.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 63 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKP 63 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCc
Confidence 3689999999999999999999999998763 566777777653
No 200
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.89 E-value=2.1e-08 Score=82.24 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=78.8
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC-HHHHHHH---HHhCCCCCcc--ccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP-TARLAQL---CELSPLAKPK--CSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~-~~~~~~~---~~~~~~~~~~--~~~~i~~ 128 (279)
.--+.+|++++|.|++|+|||||+..+++... +..|.++++++.... .....+. +.+...+.+. +.+++.+
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~ 97 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY 97 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHH
Confidence 34688999999999999999999999988763 566778888764321 1111111 0111111111 1122111
Q ss_pred Ee--cCCHHHHHHHHHhh-----hc-----c-------------CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHH
Q psy2198 129 TH--CYEFIDLKRTLESQ-----SG-----F-------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDL 183 (279)
Q Consensus 129 ~~--~~~~~~l~~~i~~~-----~~-----~-------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l 183 (279)
.. ......+.+.+... .. + ...+++++++|+.+.-.+. .....+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~-----------~~~~~l 166 (200)
T PRK13540 98 DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE-----------LSLLTI 166 (200)
T ss_pred HHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH-----------HHHHHH
Confidence 00 00001111111100 00 0 1258899999999875432 233456
Q ss_pred HHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 184 AHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 184 ~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.+.|+++.+ .+.++|+++|.....+.
T Consensus 167 ~~~l~~~~~-~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 167 ITKIQEHRA-KGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHHHH-cCCEEEEEeCCchhccc
Confidence 677777654 58999999998765543
No 201
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=4.4e-09 Score=90.12 Aligned_cols=145 Identities=15% Similarity=0.234 Sum_probs=82.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHH---HhCCCCCc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLC---ELSPLAKP--K 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~---~~~~~~~~--~ 121 (279)
.|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.++++++.. .+...+.+.+ .+...+.. .
T Consensus 26 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 26 LLHPL-SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 34444 45789999999999999999999999998763 5566677766532 1121111111 11111111 1
Q ss_pred ccCcEEEEe--------cCC---HHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 122 CSDKIFITH--------CYE---FIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 ~~~~i~~~~--------~~~---~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+.+++.+.. ... .+.+...+.. ..+ ...+++++++|+.+.-.+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~ 180 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISL-VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHH-cCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 222221110 000 0111111111 100 1158999999999875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.+||+++|......
T Consensus 181 -----------~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~ 212 (265)
T PRK10575 181 -----------AHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212 (265)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23355777788887767999999999876553
No 202
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.89 E-value=1.8e-09 Score=90.37 Aligned_cols=52 Identities=29% Similarity=0.430 Sum_probs=38.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||+..+++...-+ ++..|.++++++.
T Consensus 15 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 68 (227)
T cd03260 15 ALKDI-SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD 68 (227)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE
Confidence 34444 4478999999999999999999999999886100 1456677777654
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.89 E-value=1.3e-09 Score=97.62 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=81.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC----C--CCHHHHHHHHHhCCC-------CCcc
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES----V--FPTARLAQLCELSPL-------AKPK 121 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~----~--~~~~~~~~~~~~~~~-------~~~~ 121 (279)
+--+++|++++|.|+||||||||++.+++... +..|.++++++. . .+...+..+.....+ +.+.
T Consensus 44 sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~ 120 (382)
T TIGR03415 44 SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPW 120 (382)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCC
Confidence 34689999999999999999999999998763 666778888741 1 222222222111111 1111
Q ss_pred --ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccc
Q psy2198 122 --CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 122 --~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+.+++.+.. ..+..+....+.+.+ .+ ...+++++++|+...-.+.
T Consensus 121 ~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~--- 197 (382)
T TIGR03415 121 LTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP--- 197 (382)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH---
Confidence 222222110 011111111111111 10 1158899999998875432
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++.+.|.++.++.+.|+|+++|.....
T Consensus 198 --------~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~ 228 (382)
T TIGR03415 198 --------LIRTQLQDELLELQAKLNKTIIFVSHDLDEA 228 (382)
T ss_pred --------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2234566777777777799999999987754
No 204
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.88 E-value=6.7e-09 Score=86.50 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=38.4
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.|+||+|||||+..+++... +..|.+++++..
T Consensus 21 l~~v-s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~ 68 (220)
T TIGR02982 21 LFDI-NLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQE 68 (220)
T ss_pred Eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEE
Confidence 4443 44689999999999999999999999998763 566777777653
No 205
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=7e-10 Score=96.30 Aligned_cols=146 Identities=14% Similarity=0.186 Sum_probs=83.7
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC------CHHHHHHHH---HhCC--
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF------PTARLAQLC---ELSP-- 116 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~------~~~~~~~~~---~~~~-- 116 (279)
+.|+.+ +--+.+|++++|.|+||+|||||++.+++... +..|.+++++.... ......+.+ .+..
T Consensus 21 ~~L~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 21 RALYDV-NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred cceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 355555 56799999999999999999999999998763 56677777775321 011111111 1100
Q ss_pred CCC-ccccCcEEEEe---cCCHHHHHHHHHhh---hcc-------------------------CCCCeeEEEEeCcchhh
Q psy2198 117 LAK-PKCSDKIFITH---CYEFIDLKRTLESQ---SGF-------------------------IENKVGMIVIDSIAGIF 164 (279)
Q Consensus 117 ~~~-~~~~~~i~~~~---~~~~~~l~~~i~~~---~~~-------------------------~~~~~~lvvID~l~~~~ 164 (279)
.+. ..+.+++.+.. ..+..+..+.+.+. ..+ ...+|+++++|+.+...
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~L 176 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 000 01222221110 01111111111111 010 11588999999998754
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 165 RNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
+. .....+.+.|++++++.+.|||+++|.....
T Consensus 177 D~-----------~~~~~l~~~L~~l~~~~g~tviiitHd~~~~ 209 (290)
T PRK13634 177 DP-----------KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA 209 (290)
T ss_pred CH-----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 32 2335677778888777899999999987754
No 206
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.88 E-value=1.2e-08 Score=85.96 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=37.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ .--+++|++++|.|+||+|||||+..+++... +..|.++++++
T Consensus 36 il~~v-s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~ 83 (236)
T cd03267 36 ALKGI-SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGL 83 (236)
T ss_pred eeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE
Confidence 34443 44688999999999999999999999998763 55666776654
No 207
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.88 E-value=7.9e-09 Score=85.65 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHH---HHHhCCCCCc--cccCcEEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQ---LCELSPLAKP--KCSDKIFIT 129 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~---~~~~~~~~~~--~~~~~i~~~ 129 (279)
.--+.+|++++|.|+||+|||||++.+++... +..|.+++++....+.....+ ++.+...+.. .+.+++.+.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 34688999999999999999999999998763 566667776653211100111 1111111111 112222110
Q ss_pred ---ec----CCHHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHHH
Q psy2198 130 ---HC----YEFIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAH 178 (279)
Q Consensus 130 ---~~----~~~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~ 178 (279)
.. .....+.+.+.. ..+ ...+++++++|+.+...+. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~-----------~ 162 (213)
T TIGR01277 95 LHPGLKLNAEQQEKVVDAAQQ-VGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP-----------L 162 (213)
T ss_pred hhccCCccHHHHHHHHHHHHH-cCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH-----------H
Confidence 00 000111111111 000 1158899999999875432 2
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 179 DMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 179 ~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....+.+.|+++.++.+.++|+++|.....
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLSDA 192 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 335577777887776799999999987754
No 208
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.88 E-value=6.3e-09 Score=89.37 Aligned_cols=48 Identities=33% Similarity=0.472 Sum_probs=38.3
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ +--+++|++++|.|+||||||||+..+++... +..|.+++++..
T Consensus 23 l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 70 (269)
T PRK11831 23 FDNI-SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGEN 70 (269)
T ss_pred Eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEE
Confidence 4443 44789999999999999999999999998763 556777777653
No 209
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=1.1e-08 Score=86.01 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=35.7
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
--+.+|++++|+|++|+|||||+..+++... +..|.++++++
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~ 62 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGK 62 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCE
Confidence 3688999999999999999999999998874 56677777665
No 210
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.87 E-value=8.5e-10 Score=90.88 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.||||||||||+..+++... +..|.+++++..
T Consensus 15 ~l~~v-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 63 (205)
T cd03226 15 ILDDL-SLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKP 63 (205)
T ss_pred eeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEE
Confidence 34443 44689999999999999999999999998763 566777776654
No 211
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.87 E-value=2e-09 Score=95.04 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=40.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.|+.+ +--+.+|++++|+|+||||||||+..+++... +..|.++++++..
T Consensus 36 ~l~~v-sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G~~i 85 (331)
T PRK15079 36 AVDGV-TLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLGKDL 85 (331)
T ss_pred EEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECCEEC
Confidence 45544 44789999999999999999999999998763 5667777777654
No 212
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.87 E-value=4e-09 Score=88.05 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=34.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+.+|++++|.|+||||||||+..+++... +..|.++++++.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 43 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGAS 43 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcc
Confidence 67999999999999999999999998763 566677777764
No 213
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=3.5e-09 Score=91.93 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=38.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ +--+.+|++++|.|+||||||||++.+++... +..|.+++++.
T Consensus 26 il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~ 73 (289)
T PRK13645 26 ALNNT-SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDY 73 (289)
T ss_pred eeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCE
Confidence 45444 45789999999999999999999999998763 55566666654
No 214
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.7e-09 Score=93.09 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=39.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||+|||||++.+++... +..|.+++++..
T Consensus 17 ~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 65 (274)
T PRK13644 17 ALENI-NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGID 65 (274)
T ss_pred eeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEE
Confidence 44444 45789999999999999999999999998763 566777777654
No 215
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=5.8e-09 Score=89.71 Aligned_cols=145 Identities=14% Similarity=0.220 Sum_probs=82.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHH---hCC--CCC-c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCE---LSP--LAK-P 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~---~~~--~~~-~ 120 (279)
.|+.+ .--+.+|++++|.||||+|||||+..+++... +..|.+++++.... +...+.+.+. +.. .+. .
T Consensus 24 il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 24 ALKNV-SFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred ceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 45554 55789999999999999999999999998763 56677777765431 1111111111 000 000 0
Q ss_pred cccCcEEEEe---cCCHHHHHHHHHhh---hcc------------------------CCCCeeEEEEeCcchhhcccccc
Q psy2198 121 KCSDKIFITH---CYEFIDLKRTLESQ---SGF------------------------IENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 121 ~~~~~i~~~~---~~~~~~l~~~i~~~---~~~------------------------~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
.+.+++.+.. ..+..+....+.+. ..+ .-.+++++++|+.+.-.+.
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~---- 175 (271)
T PRK13632 100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP---- 175 (271)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH----
Confidence 1222222110 11111111111111 000 1158899999999875432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.++|+++|.....
T Consensus 176 -------~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 176 -------KGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred -------HHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence 2345677788888776679999999887654
No 216
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.87 E-value=1e-08 Score=86.34 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=78.0
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHH---HHHhCCCCCc--cccCcEEEEe
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQ---LCELSPLAKP--KCSDKIFITH 130 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~---~~~~~~~~~~--~~~~~i~~~~ 130 (279)
--+.+|++++|.|+||+|||||+..+++... +..|.++++++.........+ ++.+...+.. .+.+++.+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~ 97 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGL 97 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHH
Confidence 3689999999999999999999999998763 556666776654321111110 0011111110 0122221111
Q ss_pred c---CCH----HHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHHHHH
Q psy2198 131 C---YEF----IDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHD 179 (279)
Q Consensus 131 ~---~~~----~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~ 179 (279)
. .+. +.+.+.+... .+ ...+++++++|+.+.-.+. ..
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~-----------~~ 165 (237)
T TIGR00968 98 EIRKHPKAKIKARVEELLELV-QLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDA-----------KV 165 (237)
T ss_pred HhcCCCHHHHHHHHHHHHHHc-CCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH-----------HH
Confidence 0 010 1111111110 00 1147899999999875432 23
Q ss_pred HHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 180 MRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 180 ~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
...+.+.|++++++.++++|+++|.....
T Consensus 166 ~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 166 RKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 35566777777766689999999987754
No 217
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1.4e-09 Score=94.31 Aligned_cols=49 Identities=27% Similarity=0.438 Sum_probs=40.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 22 ~l~~v-sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 70 (287)
T PRK13641 22 GLDNI-SFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYH 70 (287)
T ss_pred ceeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEE
Confidence 45554 45789999999999999999999999998763 667778887764
No 218
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.86 E-value=1.9e-09 Score=97.24 Aligned_cols=144 Identities=12% Similarity=0.199 Sum_probs=82.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHH---HhCCCCCcc--
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLC---ELSPLAKPK-- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~---~~~~~~~~~-- 121 (279)
.|+.+ +--+++|+++.|.||||+|||||++.+++... +..|.++++++... +...+.+.+ .+...+...
T Consensus 18 vL~~v-s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 18 VLDGV-DLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 34444 44789999999999999999999999998763 56677888776432 222222211 111111111
Q ss_pred ccCcEEEEe-----cC---CH---HHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 122 CSDKIFITH-----CY---EF---IDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 ~~~~i~~~~-----~~---~~---~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+.+++.+.. .. .. +.+.+.+ +...+ ...+|+++++|+.+...+.
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~l-e~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAM-ERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHH-HHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 222221110 00 11 1111111 11111 1158999999999875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....++.+.|+++++ .+.|||+++|......
T Consensus 173 -----------~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 173 -----------NHQVRTLELVRRLVD-DGKTAVAAIHDLDLAA 203 (402)
T ss_pred -----------HHHHHHHHHHHHHHh-cCCEEEEEECCHHHHH
Confidence 123457777777775 5889999999877653
No 219
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=86.48 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHH---HhCCCCC-ccccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLC---ELSPLAK-PKCSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~---~~~~~~~-~~~~~~i~~ 128 (279)
.--+.+|++++|.|+||||||||++.+++... +..|.+++++.... +...+.+.+ .+...+. ..+.+++.+
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~ 99 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY 99 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhc
Confidence 34688999999999999999999999998763 56666667664321 111111110 0000000 011122211
Q ss_pred Eec---CCHHHHHHHHHhh------hc-----c-------------CCCCeeEEEEeCcchhhccccccchhhHHHHHHH
Q psy2198 129 THC---YEFIDLKRTLESQ------SG-----F-------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMR 181 (279)
Q Consensus 129 ~~~---~~~~~l~~~i~~~------~~-----~-------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~ 181 (279)
... .....+.+.+... .. + .-.+++++++|+.+.-.+. ....
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~-----------~~~~ 168 (241)
T PRK14250 100 GPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-----------TSTE 168 (241)
T ss_pred chhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-----------HHHH
Confidence 100 0001111111110 00 0 1158999999999875432 1234
Q ss_pred HHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 182 DLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 182 ~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.+.+.|++++++.+.+||+++|......
T Consensus 169 ~l~~~l~~~~~~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 169 IIEELIVKLKNKMNLTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 5777777777767999999999877643
No 220
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1.4e-09 Score=93.49 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=39.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.+++++..
T Consensus 16 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 64 (271)
T PRK13638 16 VLKGL-NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKP 64 (271)
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEE
Confidence 34444 45789999999999999999999999998763 566777777654
No 221
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.85 E-value=2e-09 Score=89.91 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=35.7
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.--+.+|++++|.|+||+|||||+..+++... +..|.++++++
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~ 84 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGR 84 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCE
Confidence 34689999999999999999999999998763 56666776654
No 222
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.85 E-value=4.3e-08 Score=81.83 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=37.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.+++++
T Consensus 23 il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~ 69 (224)
T TIGR02324 23 VLKNV-SLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRH 69 (224)
T ss_pred EEecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEec
Confidence 34444 44689999999999999999999999998763 5566677763
No 223
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=2.8e-09 Score=90.05 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 66 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDED 66 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEE
Confidence 44689999999999999999999999998763 566777777754
No 224
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.85 E-value=3.1e-08 Score=84.27 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=38.0
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.|+||||||||+..+++... +..|.++++++.
T Consensus 19 l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 66 (253)
T TIGR02323 19 CRDV-SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRS 66 (253)
T ss_pred eecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccc
Confidence 4443 45789999999999999999999999998763 555667777653
No 225
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=2.4e-09 Score=88.56 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=37.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+.+| +++|.||||||||||++.+++... +..|.++++++.
T Consensus 15 ~l~~v-s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 62 (211)
T cd03264 15 ALDGV-SLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQD 62 (211)
T ss_pred EEcce-eEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCc
Confidence 34443 4468889 999999999999999999998763 566777777764
No 226
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.85 E-value=1.5e-09 Score=90.45 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=38.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.||||+|||||+..+++... +..|.++++++.
T Consensus 17 il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 65 (220)
T cd03263 17 AVDDL-SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYS 65 (220)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence 34443 44689999999999999999999999998763 566777776654
No 227
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=1.3e-08 Score=85.69 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=36.0
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
--+.+|++++|.|+||+|||||+..+++... +..|.+|+++..
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~ 62 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKD 62 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEE
Confidence 3578999999999999999999999988763 666777777654
No 228
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=7.2e-09 Score=88.26 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=36.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||+|||||+..+++... +..|.+++++..
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 68 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQH 68 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEE
Confidence 34688999999999999999999999998763 566667776653
No 229
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.84 E-value=8e-10 Score=96.56 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=39.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||+..+++... +..|.+++++..
T Consensus 19 ~l~~v-sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 67 (303)
T TIGR01288 19 VVNDL-SFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEP 67 (303)
T ss_pred EEcce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 34444 44789999999999999999999999998763 566777776653
No 230
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=8.5e-09 Score=91.11 Aligned_cols=162 Identities=13% Similarity=0.173 Sum_probs=90.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc----
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS-QPHKGVLYICTESV--FPTARLAQLCELSPLAKPK---- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~-~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~---- 121 (279)
.|+.+ +--+.+|++++|+|+||||||||++.+++....+ .+..|.++++++.. .+......+.....++-.+
T Consensus 22 ~l~~v-sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 22 AVDRV-SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEeee-EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 45554 4578999999999999999999999999876310 13456777777643 2232222221111111111
Q ss_pred -------ccCcEE-------EEec--CC----HHHHHHHHHhhhcc---------------------------CCCCeeE
Q psy2198 122 -------CSDKIF-------ITHC--YE----FIDLKRTLESQSGF---------------------------IENKVGM 154 (279)
Q Consensus 122 -------~~~~i~-------~~~~--~~----~~~l~~~i~~~~~~---------------------------~~~~~~l 154 (279)
+.+++. .... .. .....+.+.. +.+ ...++++
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHR-VGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-CCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 000000 0000 00 0111111111 000 1158999
Q ss_pred EEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchh
Q psy2198 155 IVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYE 223 (279)
Q Consensus 155 vvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~ 223 (279)
+++|+.+...+. ....++.+.|+++.++.+.++|+++|....... +.......|.+.+
T Consensus 180 lilDEPts~LD~-----------~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive 239 (330)
T PRK15093 180 LIADEPTNAMEP-----------TTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239 (330)
T ss_pred EEEeCCCCcCCH-----------HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999875432 233567788888877789999999999776643 3444444555544
No 231
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.84 E-value=2.8e-08 Score=81.37 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=38.0
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+.+|++++|.||+|+|||||++.+++... +..|.++++++.
T Consensus 16 l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 63 (198)
T TIGR01189 16 FEGL-SFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTA 63 (198)
T ss_pred Eeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEE
Confidence 4443 44689999999999999999999999998763 556677777653
No 232
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=4.3e-09 Score=87.28 Aligned_cols=137 Identities=16% Similarity=0.178 Sum_probs=76.9
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC------HHHHHHHH---HhCCCCCcc--ccCc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP------TARLAQLC---ELSPLAKPK--CSDK 125 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~------~~~~~~~~---~~~~~~~~~--~~~~ 125 (279)
-+.+ ++++|.|+||+|||||+..+++... +..|.++++++...+ .....+.+ .+...+... +.++
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 5789 9999999999999999999998763 556666776653211 00011100 111111100 1111
Q ss_pred EEEEe-cCCH----HHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhHH
Q psy2198 126 IFITH-CYEF----IDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQR 176 (279)
Q Consensus 126 i~~~~-~~~~----~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~ 176 (279)
+.+.. .... ..+.+.+... .+ .-.+++++++|+.+.-.+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~---------- 164 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLL-GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR---------- 164 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHc-CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH----------
Confidence 11100 0000 1111111110 00 1158999999999875432
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 177 AHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 177 ~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.++|+++|......
T Consensus 165 -~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 165 -ALRLQLLPELKQIKKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred -HHHHHHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence 23456778888888777999999999877553
No 233
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=2.4e-08 Score=82.84 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=36.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+-.+.+|++++|.|+||+|||||++.+++... +..|.++++++.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~ 74 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKT 74 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEE
Confidence 34789999999999999999999999998763 556666666643
No 234
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.83 E-value=1e-09 Score=97.80 Aligned_cols=138 Identities=15% Similarity=0.233 Sum_probs=79.0
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH------HHHHH---HHHhCCCCCcc--ccC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT------ARLAQ---LCELSPLAKPK--CSD 124 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~------~~~~~---~~~~~~~~~~~--~~~ 124 (279)
--+++|++++|.||||||||||++.+++... +..|.++++++..... ....+ ++.+...+.+. +.+
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 3578999999999999999999999998763 5667777776542110 00010 11111111111 222
Q ss_pred cEEEEe-cCCHHH----HHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 125 KIFITH-CYEFID----LKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 125 ~i~~~~-~~~~~~----l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
++.+.. .....+ +.+.+.. ..+ ...+++++++|+.+.-.+.
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~-~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~--------- 164 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIEL-LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD--------- 164 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHH-cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH---------
Confidence 222110 000011 1111111 100 1157899999999875432
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.++|+++|.....
T Consensus 165 --~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~ 195 (354)
T TIGR02142 165 --PRKYEILPYLERLHAEFGIPILYVSHSLQEV 195 (354)
T ss_pred --HHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 2335677788888877799999999987654
No 235
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.83 E-value=3.9e-08 Score=78.81 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=71.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC-CCHHH---H--HHHHHhCCCCCccc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV-FPTAR---L--AQLCELSPLAKPKC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~-~~~~~---~--~~~~~~~~~~~~~~ 122 (279)
.|+.+ +--+++|++++|.||||||||||++.+.. ..|. +++.+... ..... + .+.+.. .++....
T Consensus 10 ~l~~i-sl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~-v~~~~~~~~~~~~~~~~~~q~~~l~~-~~L~~~~ 80 (176)
T cd03238 10 NLQNL-DVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGK-ARLISFLPKFSRNKLIFIDQLQFLID-VGLGYLT 80 (176)
T ss_pred eecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCc-EEECCcccccccccEEEEhHHHHHHH-cCCCccc
Confidence 34443 44789999999999999999999987631 2232 33332211 00000 0 111111 1211100
Q ss_pred cCcEEEEecCCHHHH--HHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEE
Q psy2198 123 SDKIFITHCYEFIDL--KRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVIC 200 (279)
Q Consensus 123 ~~~i~~~~~~~~~~l--~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~ 200 (279)
.+. .....+..+. ......+. ..++++++++|+.+.-.+. .....+.+.|+++++ .+.+||+
T Consensus 81 ~~~--~~~~LSgGq~qrl~laral~--~~~~p~llLlDEPt~~LD~-----------~~~~~l~~~l~~~~~-~g~tvIi 144 (176)
T cd03238 81 LGQ--KLSTLSGGELQRVKLASELF--SEPPGTLFILDEPSTGLHQ-----------QDINQLLEVIKGLID-LGNTVIL 144 (176)
T ss_pred cCC--CcCcCCHHHHHHHHHHHHHh--hCCCCCEEEEeCCcccCCH-----------HHHHHHHHHHHHHHh-CCCEEEE
Confidence 000 1112232222 22222222 2233899999999875432 233456667777654 6999999
Q ss_pred eccccccc
Q psy2198 201 TNQVTSAM 208 (279)
Q Consensus 201 v~h~~~~~ 208 (279)
++|.....
T Consensus 145 vSH~~~~~ 152 (176)
T cd03238 145 IEHNLDVL 152 (176)
T ss_pred EeCCHHHH
Confidence 99987643
No 236
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.7e-08 Score=88.26 Aligned_cols=136 Identities=17% Similarity=0.133 Sum_probs=82.1
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCC---CCcc----------
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPL---AKPK---------- 121 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~---~~~~---------- 121 (279)
.+.+|+++.|+|.||||||||++.+.+.+. |+.|-++++++-. -..+++++++...+. +..+
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~ 421 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASP 421 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCCh
Confidence 689999999999999999999999999985 7777888888733 345566666543211 0000
Q ss_pred -----------------ccCcEEEEecCC--HHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHH
Q psy2198 122 -----------------CSDKIFITHCYE--FIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRD 182 (279)
Q Consensus 122 -----------------~~~~i~~~~~~~--~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~ 182 (279)
+.++-+.....+ ...-.+.+...+ ++.+++|.|+..+--+ . .-.+.
T Consensus 422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~All----EeR~Ilv~DEWAADQD-------P----aFRR~ 486 (546)
T COG4615 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL----EERDILVLDEWAADQD-------P----AFRRE 486 (546)
T ss_pred HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHH----hhCCeEEeehhhccCC-------h----HHHHH
Confidence 000000000000 011111111111 3558899999886211 1 12344
Q ss_pred HHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 183 LAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 183 l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+.+.+-.+.++.|.||++++|.-.-++.
T Consensus 487 FY~~lLp~LK~qGKTI~aIsHDd~YF~~ 514 (546)
T COG4615 487 FYQVLLPLLKEQGKTIFAISHDDHYFIH 514 (546)
T ss_pred HHHHHhHHHHHhCCeEEEEecCchhhhh
Confidence 5556666666899999999998776654
No 237
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=8.6e-09 Score=84.22 Aligned_cols=44 Identities=30% Similarity=0.455 Sum_probs=36.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.|+||+|||||++.+++... +..|.+++++..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 63 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCN 63 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcc
Confidence 45688999999999999999999999998763 556667777754
No 238
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.83 E-value=3.1e-09 Score=92.71 Aligned_cols=50 Identities=26% Similarity=0.446 Sum_probs=40.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.|+.+ .--+++|++++|.||||+|||||++.+++... +..|.+++++...
T Consensus 17 ~l~~i-s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~ 66 (301)
T TIGR03522 17 ALDEV-SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDV 66 (301)
T ss_pred EEEEe-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEc
Confidence 44444 45789999999999999999999999998763 6677778877643
No 239
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.83 E-value=2.6e-08 Score=83.36 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=38.3
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.||||||||||+..+++... +..|.++++++.
T Consensus 21 l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 68 (228)
T cd03257 21 LDDV-SFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKD 68 (228)
T ss_pred ecCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEE
Confidence 4443 44789999999999999999999999998763 556667777654
No 240
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=4e-09 Score=89.12 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||+|||||++.+++... +..|.++++++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 65 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNH 65 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEe
Confidence 34689999999999999999999999998763 566777777664
No 241
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.6e-09 Score=91.28 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=39.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|+|+||+|||||+..+++... +..|.+++++..
T Consensus 20 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~ 68 (237)
T PRK11614 20 ALHEV-SLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKD 68 (237)
T ss_pred eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEe
Confidence 44444 45789999999999999999999999988763 566767777754
No 242
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.82 E-value=1.2e-08 Score=87.44 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=38.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|+||||||||||+..+++... +..|.++++++.
T Consensus 28 ~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 76 (267)
T PRK15112 28 AVKPL-SFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHP 76 (267)
T ss_pred eeeee-eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEE
Confidence 45554 45789999999999999999999999998763 556666776653
No 243
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=2.8e-09 Score=90.08 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=38.3
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.||||+|||||+..+++... +..|.+++++..
T Consensus 17 l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 64 (242)
T cd03295 17 VNNL-NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGED 64 (242)
T ss_pred eeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeE
Confidence 4443 44789999999999999999999999998763 566777777654
No 244
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.82 E-value=8.1e-09 Score=88.36 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=35.8
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ-PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-~~~gvlyi~~e~ 101 (279)
.--+.+|++++|+|+||||||||+..+++... |. ...|.+++++..
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRT 70 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEe
Confidence 34688999999999999999999999998763 11 124677777754
No 245
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.82 E-value=2e-08 Score=82.82 Aligned_cols=143 Identities=14% Similarity=0.184 Sum_probs=79.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHH---HhCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLC---ELSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~---~~~~~~~~-~~ 122 (279)
.|+.+ .--+++|++++|.|++|+|||||++.+++... +..|.+++++... .+.......+ .+...+.. .+
T Consensus 23 ~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 98 (207)
T cd03369 23 VLKNV-SFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTI 98 (207)
T ss_pred cccCc-eEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccH
Confidence 34443 34689999999999999999999999998763 5566677766532 1111111111 11111110 12
Q ss_pred cCcEEEEecCCHHHHHHHHHhhhc---c-------------CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHH
Q psy2198 123 SDKIFITHCYEFIDLKRTLESQSG---F-------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHY 186 (279)
Q Consensus 123 ~~~i~~~~~~~~~~l~~~i~~~~~---~-------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (279)
.+++.+....+.+++.+.+..-.. + .-.+++++++|+.+.-.+. .....+.+.
T Consensus 99 ~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~-----------~~~~~l~~~ 167 (207)
T cd03369 99 RSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY-----------ATDALIQKT 167 (207)
T ss_pred HHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH-----------HHHHHHHHH
Confidence 233322222222222222220000 0 1258899999999875432 123456677
Q ss_pred HHHHHHHcCcEEEEeccccccc
Q psy2198 187 LHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 187 L~~la~~~~~~vi~v~h~~~~~ 208 (279)
|+++. .+.++|+++|.....
T Consensus 168 l~~~~--~~~tiii~th~~~~~ 187 (207)
T cd03369 168 IREEF--TNSTILTIAHRLRTI 187 (207)
T ss_pred HHHhc--CCCEEEEEeCCHHHH
Confidence 77663 389999999876654
No 246
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.81 E-value=2.3e-09 Score=91.07 Aligned_cols=49 Identities=27% Similarity=0.395 Sum_probs=38.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|+|+||+|||||+..+++... +..|.+++++..
T Consensus 18 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 66 (250)
T PRK11264 18 VLHGI-DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDIT 66 (250)
T ss_pred eeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEE
Confidence 34443 44789999999999999999999999998763 566767776643
No 247
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=90.56 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=95.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCcc-----
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPK----- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~----- 121 (279)
.|..+ +--+.+|+...|+||||||||||++.+++.+. +..|.+.+|+-+.. +.+.+. +..++-++
T Consensus 351 il~~i-sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~lG----~hiGYLPQdVeLF 422 (580)
T COG4618 351 ILKGI-SFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQLG----RHIGYLPQDVELF 422 (580)
T ss_pred ceecc-eeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHhc----cccCcCcccceec
Confidence 34433 44789999999999999999999999999984 77888888887642 222222 22232222
Q ss_pred ---ccCcEE-EEecCCHHHHHHHHH-----hhh--------------------------cc---CCCCeeEEEEeCcchh
Q psy2198 122 ---CSDKIF-ITHCYEFIDLKRTLE-----SQS--------------------------GF---IENKVGMIVIDSIAGI 163 (279)
Q Consensus 122 ---~~~~i~-~~~~~~~~~l~~~i~-----~~~--------------------------~~---~~~~~~lvvID~l~~~ 163 (279)
+.+|+- +.+..+.+.+.+..+ +++ .. ..++|.+||+|+..+-
T Consensus 423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 233332 222333333332221 100 00 2268999999999875
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhhe
Q psy2198 164 FRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRD 230 (279)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~rl 230 (279)
.+.+ .+ ..+.+++.... +.|+++|+++|--+-... +.......|..-...+...+
T Consensus 503 LD~~--------GE---~AL~~Ai~~~k-~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 503 LDSE--------GE---AALAAAILAAK-ARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred cchh--------HH---HHHHHHHHHHH-HcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 4322 22 34556665544 379999999887665544 44455555555444444333
No 248
>KOG0056|consensus
Probab=98.81 E-value=4.4e-08 Score=87.87 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=120.7
Q ss_pred ccHHHHHHHHHHHhhcc-cccC---CC-CC-------CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHH
Q psy2198 12 FQEWEVNKVKDLKKKKA-FQVG---KN-PI-------DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCL 79 (279)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~---~~-~~-------~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~ 79 (279)
=+.-|.+++-|..++.. .... .+ +. ..-.-.+.+|-+.|..+ +-.+++|+.++++||+|+||||+++
T Consensus 504 ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~di-sF~v~pGktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 504 KNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDI-SFTVQPGKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred HhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecc-eEEecCCcEEEEECCCCCchhHHHH
Confidence 34557788888877662 1111 11 11 11122345566666665 5678999999999999999999999
Q ss_pred HHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc--------ccCcEEEEecCC-HHHHHHHHHhh------
Q psy2198 80 QMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK--------CSDKIFITHCYE-FIDLKRTLESQ------ 144 (279)
Q Consensus 80 ~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~-~~~l~~~i~~~------ 144 (279)
.+...+- .+.|.+.+|+.+.- .-. .+-+....+.-++ +..|+.+.++.. .+++.+..+..
T Consensus 583 lLfRffd---v~sGsI~iDgqdIr-nvt-~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrI 657 (790)
T KOG0056|consen 583 LLFRFFD---VNSGSITIDGQDIR-NVT-QSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRI 657 (790)
T ss_pred HHHHHhh---ccCceEEEcCchHH-HHH-HHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHH
Confidence 9999884 67789999998751 111 2223344554444 556777766543 23333222110
Q ss_pred hcc----------------------------CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCc
Q psy2198 145 SGF----------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRI 196 (279)
Q Consensus 145 ~~~----------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~ 196 (279)
... .-..|.++++|+-++..+.. .. +++-.+|.++|+ |.
T Consensus 658 l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~--------tE---R~IQaaL~rlca--~R 724 (790)
T KOG0056|consen 658 LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTN--------TE---RAIQAALARLCA--NR 724 (790)
T ss_pred hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCc--------cH---HHHHHHHHHHhc--CC
Confidence 000 11578899999988754432 11 334466777774 55
Q ss_pred EEEEeccccccc-CCCCCccCccccchhhhhhhheeee
Q psy2198 197 VVICTNQVTSAM-THSDKNIPALGLTYERAHDMRDLAH 233 (279)
Q Consensus 197 ~vi~v~h~~~~~-~~~~~~~~~~g~~~~~~~~~rl~l~ 233 (279)
|-|++.|--+.. ..+.......|.+.+..-...++.+
T Consensus 725 TtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 725 TTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred ceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 555665554443 4455666666777776666555544
No 249
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.81 E-value=7e-09 Score=98.85 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~ 128 (279)
.--+++|+.++|+|++|||||||+..+++.+. +..|.+++++.+. .+.+.+.+.+. +...+... +.+|+.+
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~ 437 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTL 437 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHh
Confidence 34789999999999999999999999999884 6778888888643 23333333322 11111111 5567766
Q ss_pred EecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccc--ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 129 THCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 129 ~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
.+..+.+++.+.++..- .. + +|+.+..-+.... .+...+..++|.-.++|+|- .+..+++.+++++
T Consensus 438 ~~~~~d~~i~~a~~~~g-l~----~--~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl-----~~~~illlDEpts 505 (592)
T PRK10790 438 GRDISEEQVWQALETVQ-LA----E--LARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV-----QTPQILILDEATA 505 (592)
T ss_pred CCCCCHHHHHHHHHHcC-cH----H--HHHhccccccccccCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEEeCCcc
Confidence 65555566655554421 00 0 0111110011000 11112225666677888877 5888999999999
Q ss_pred ccCC
Q psy2198 207 AMTH 210 (279)
Q Consensus 207 ~~~~ 210 (279)
..+.
T Consensus 506 ~LD~ 509 (592)
T PRK10790 506 NIDS 509 (592)
T ss_pred cCCH
Confidence 8875
No 250
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.81 E-value=3.4e-09 Score=89.86 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=36.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----CeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH-----KGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~-----~gvlyi~~e~ 101 (279)
.--+++|++++|.|+||||||||+..+++... +. .|.+++++..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEE
Confidence 44789999999999999999999999998763 33 6767776653
No 251
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.3e-08 Score=83.71 Aligned_cols=138 Identities=9% Similarity=0.094 Sum_probs=74.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH-HHHHHHH---HhCCCCCc--cccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT-ARLAQLC---ELSPLAKP--KCSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~-~~~~~~~---~~~~~~~~--~~~~~i~~ 128 (279)
.--+++|++++|+|+||||||||+..+++......+..|.+++++...... ....+.+ .+...+.. .+.+++.+
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 106 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF 106 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence 346899999999999999999999999988621004566777776543211 1111100 00000100 01111111
Q ss_pred E---------ecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEE
Q psy2198 129 T---------HCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVV 198 (279)
Q Consensus 129 ~---------~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~v 198 (279)
. ...+..+... .+... .-.+++++++|+.+.-.+. .....+.+.|++++++.+.++
T Consensus 107 ~~~~~~~~~~~~LS~Ge~qrl~lara---l~~~p~llllDEPt~~LD~-----------~~~~~~~~~l~~~~~~~~~t~ 172 (202)
T cd03233 107 ALRCKGNEFVRGISGGERKRVSIAEA---LVSRASVLCWDNSTRGLDS-----------STALEILKCIRTMADVLKTTT 172 (202)
T ss_pred hhhhccccchhhCCHHHHHHHHHHHH---HhhCCCEEEEcCCCccCCH-----------HHHHHHHHHHHHHHHhCCCEE
Confidence 0 0111112111 11111 2258899999999875432 223457777888877667765
Q ss_pred EE-eccccc
Q psy2198 199 IC-TNQVTS 206 (279)
Q Consensus 199 i~-v~h~~~ 206 (279)
|+ ++|...
T Consensus 173 ii~~~h~~~ 181 (202)
T cd03233 173 FVSLYQASD 181 (202)
T ss_pred EEEEcCCHH
Confidence 55 455533
No 252
>KOG0061|consensus
Probab=98.81 E-value=1.2e-08 Score=96.84 Aligned_cols=145 Identities=15% Similarity=0.230 Sum_probs=86.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHH---hCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE---LSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~---~~~~~~~~--~~ 123 (279)
.|+.+ .|-+.+|++++|.||+|+|||||+..+++...-.....|.+.++++.. +.+...++.+ |.-.+.+. +.
T Consensus 45 iL~~v-sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~-~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 45 ILKGV-SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR-DSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred eeeCc-EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC-chhhhhheeEEEcccccccccccHH
Confidence 34444 678999999999999999999999999998752123456888888543 2222222211 10000000 11
Q ss_pred C------cEEEEecCCHHHHHHHHHhhhcc--------------------------------CCCCeeEEEEeCcchhhc
Q psy2198 124 D------KIFITHCYEFIDLKRTLESQSGF--------------------------------IENKVGMIVIDSIAGIFR 165 (279)
Q Consensus 124 ~------~i~~~~~~~~~~l~~~i~~~~~~--------------------------------~~~~~~lvvID~l~~~~~ 165 (279)
+ ++......+..+..+.+.+.+.. .-.+|.++++|+.+.-.+
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 1 11122222223333333222210 115789999999997433
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEe-cccccc
Q psy2198 166 NTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICT-NQVTSA 207 (279)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v-~h~~~~ 207 (279)
. ....++++.|+++|++ |++||++ +|++..
T Consensus 203 S-----------~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~ 233 (613)
T KOG0061|consen 203 S-----------FSALQVVQLLKRLARS-GRTVICTIHQPSSE 233 (613)
T ss_pred h-----------hhHHHHHHHHHHHHhC-CCEEEEEEeCCcHH
Confidence 2 2345689999999998 9999985 555544
No 253
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.80 E-value=9.2e-09 Score=97.97 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=82.4
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFIT 129 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~ 129 (279)
--+++|+.++|+|++|||||||+..+++.+ | ..|.+++++.+. .+.+.+++.+. +...+... +.+|+.+.
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p--~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL--P--YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG 446 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC--C--CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcC
Confidence 368999999999999999999999998876 3 356777877543 34444443322 21111111 56777776
Q ss_pred ec-CCHHHHHHHHHhhh-----c-c----------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 130 HC-YEFIDLKRTLESQS-----G-F----------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 130 ~~-~~~~~l~~~i~~~~-----~-~----------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
++ .+.+++.+.++..- . . .-.+++++++|+.++-.+..
T Consensus 447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~------- 519 (588)
T PRK11174 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH------- 519 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH-------
Confidence 43 45555555443210 0 0 00467888888887754321
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.-..+.+.|+++. .+.|+|+++|-.+...
T Consensus 520 ----te~~i~~~l~~~~--~~~TvIiItHrl~~i~ 548 (588)
T PRK11174 520 ----SEQLVMQALNAAS--RRQTTLMVTHQLEDLA 548 (588)
T ss_pred ----HHHHHHHHHHHHh--CCCEEEEEecChHHHH
Confidence 1233445555553 4678888777765544
No 254
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.80 E-value=8e-09 Score=100.08 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=86.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KCSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~~~~i~~ 128 (279)
+--+++|+.++|+|++|||||||++.+++.+. +..|.+++++.+. .+...+++.+. +...+.. .+.+|+.+
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~ 549 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAG 549 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhc
Confidence 34799999999999999999999999999884 7778889888653 33333333221 1111111 15667766
Q ss_pred EecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccc--ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 129 THCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 129 ~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
.++.+.+++.+.++..- .. + +|+.+..-+.... .+...+..++|.-.++|+|- .+..+++.+++++
T Consensus 550 ~~~~~~e~i~~al~~a~-l~----~--~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll-----~~p~iLiLDEpTS 617 (686)
T TIGR03797 550 GAPLTLDEAWEAARMAG-LA----E--DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV-----RKPRILLFDEATS 617 (686)
T ss_pred CCCCCHHHHHHHHHHcC-cH----H--HHHhccccccccccCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEeCCcc
Confidence 65566666666665431 00 0 1111111111111 11122335677777888887 6899999999999
Q ss_pred ccCC
Q psy2198 207 AMTH 210 (279)
Q Consensus 207 ~~~~ 210 (279)
..+.
T Consensus 618 ~LD~ 621 (686)
T TIGR03797 618 ALDN 621 (686)
T ss_pred CCCH
Confidence 8875
No 255
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.6e-08 Score=85.03 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.|+||+|||||++.+++... +..|.++++++.
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~ 64 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQD 64 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEE
Confidence 44689999999999999999999999998763 566667776653
No 256
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.5e-08 Score=85.12 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=38.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|+||||+|||||++.+++... +..|.++++++.
T Consensus 17 ~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 65 (234)
T cd03251 17 VLRDI-SLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHD 65 (234)
T ss_pred ceeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEE
Confidence 34443 34689999999999999999999999998873 566777777653
No 257
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.80 E-value=7.3e-09 Score=100.46 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCC-ccccCcEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAK-PKCSDKIFIT 129 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~-~~~~~~i~~~ 129 (279)
--+++|+.++|+|++|||||||+..+++.+. +..|.+++++.+. .+...+++.+. +...+. ..+.+|+.+.
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~ 562 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG 562 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCC
Confidence 3689999999999999999999999999884 6778888887643 22222222211 110010 0144555554
Q ss_pred ec-CCHHHHHHHHHhhh--------cc--------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 130 HC-YEFIDLKRTLESQS--------GF--------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 130 ~~-~~~~~l~~~i~~~~--------~~--------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
++ .+.+++.+.+...- +. .-.+++++++|+.++-.+..
T Consensus 563 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~------- 635 (694)
T TIGR03375 563 APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR------- 635 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-------
Confidence 43 34444443333210 00 11478888999888754321
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....+.+.|.++. .++|+|+++|-.+...
T Consensus 636 ----te~~i~~~l~~~~--~~~T~iiItHrl~~~~ 664 (694)
T TIGR03375 636 ----SEERFKDRLKRWL--AGKTLVLVTHRTSLLD 664 (694)
T ss_pred ----HHHHHHHHHHHHh--CCCEEEEEecCHHHHH
Confidence 2234555565554 4788888888765543
No 258
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.80 E-value=3.3e-08 Score=84.70 Aligned_cols=49 Identities=24% Similarity=0.393 Sum_probs=39.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||||||||++.+++... +..|.++++++.
T Consensus 26 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 74 (265)
T TIGR02769 26 VLTNV-SLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQD 74 (265)
T ss_pred EeeCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEE
Confidence 44444 44789999999999999999999999998763 566777777654
No 259
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.9e-08 Score=91.08 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=95.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHH---HhCCCCCcc-c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLC---ELSPLAKPK-C 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~---~~~~~~~~~-~ 122 (279)
.|+.+ +--+.+|+=++|.|++||||||+++.+++.+. ++.|-+.+.+.+. .+.+.+.+.+ .+...+..+ .
T Consensus 353 ~L~~~-~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tl 428 (573)
T COG4987 353 ALKNF-NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428 (573)
T ss_pred hhhcc-ceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHH
Confidence 44444 45799999999999999999999999999885 6666666655433 3443333332 222222222 6
Q ss_pred cCcEEEEecC-CHHHHHHHHHhhhccCCCCeeEEEEeCcchhh-ccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEE
Q psy2198 123 SDKIFITHCY-EFIDLKRTLESQSGFIENKVGMIVIDSIAGIF-RNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVIC 200 (279)
Q Consensus 123 ~~~i~~~~~~-~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~ 200 (279)
.+|+...++. +-+++.+.+++.- . .-++-+....+. +-+..+...+..+++.-.+++.|- ++.++++
T Consensus 429 r~NL~lA~~~AsDEel~~aL~qvg-L-----~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL-----~dapl~l 497 (573)
T COG4987 429 RDNLRLANPDASDEELWAALQQVG-L-----EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL-----HDAPLWL 497 (573)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcC-H-----HHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH-----cCCCeEE
Confidence 6788887765 4566666665531 0 000111111110 111222222234555667777777 6999999
Q ss_pred ecccccccCCCCCccCccccchhhhhhhhe
Q psy2198 201 TNQVTSAMTHSDKNIPALGLTYERAHDMRD 230 (279)
Q Consensus 201 v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl 230 (279)
.++++...+. ..-...+....++..+..+
T Consensus 498 LDEPTegLD~-~TE~~vL~ll~~~~~~kTl 526 (573)
T COG4987 498 LDEPTEGLDP-ITERQVLALLFEHAEGKTL 526 (573)
T ss_pred ecCCcccCCh-hhHHHHHHHHHHHhcCCeE
Confidence 9999998885 2222233444444444333
No 260
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.80 E-value=3.1e-08 Score=84.36 Aligned_cols=165 Identities=15% Similarity=0.150 Sum_probs=98.0
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH-------hCCCCCcc--ccC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE-------LSPLAKPK--CSD 124 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~-------~~~~~~~~--~~~ 124 (279)
--++.|++.+|-|-||||||||++.+-..+ .+..|.+++++++. .+.+.+..+.. +.+++-+- +++
T Consensus 49 l~v~~GeIfViMGLSGSGKSTLvR~~NrLi---ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~ 125 (386)
T COG4175 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLI---EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLE 125 (386)
T ss_pred eeecCCeEEEEEecCCCCHHHHHHHHhccC---CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhh
Confidence 368999999999999999999999888777 36777888888865 34444444333 33333222 555
Q ss_pred cEEEEec---CCHHHHHHHHHhhhcc---------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 125 KIFITHC---YEFIDLKRTLESQSGF---------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 125 ~i~~~~~---~~~~~l~~~i~~~~~~---------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
|..|.-+ .+-.+-.+...+.++. ...++++++.|+.-+-.+.
T Consensus 126 Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDP-------- 197 (386)
T COG4175 126 NVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDP-------- 197 (386)
T ss_pred hhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcCh--------
Confidence 5544321 1222222222222110 1246777777775443221
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeec
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHY 234 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k 234 (279)
-...++-..|.+|.++.+.||++++|.-.+.-. +....+-+|.++.......++..+
T Consensus 198 ---LIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 198 ---LIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ---HHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCc
Confidence 122445566777888899999999998776432 344444556665544444444443
No 261
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.8e-08 Score=84.32 Aligned_cols=145 Identities=14% Similarity=0.264 Sum_probs=82.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHH---HhCCCCCc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLC---ELSPLAKP--K 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~---~~~~~~~~--~ 121 (279)
.|+.+ .--+.+|++++|+|+||||||||++.+++... +..|.++++++.. .+...+...+ .+...+.. .
T Consensus 22 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 22 VAENL-TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred Eeeec-ceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 34443 45789999999999999999999999998763 5566677776532 1222211111 11111111 1
Q ss_pred ccCcEEEE--e------cCC---HHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 122 CSDKIFIT--H------CYE---FIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 ~~~~i~~~--~------~~~---~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+.+++.+. . ... ...+.+.+.. ..+ .-.+++++++|+.+.-.+.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~ 176 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA-TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHH-cCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 11221110 0 000 0111111111 000 1158999999999875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.+.+||+++|......
T Consensus 177 -----------~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 177 -----------SHQIDLLELLSELNREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23345777777877767999999999887543
No 262
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.79 E-value=6.4e-09 Score=88.66 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=38.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||++.+++... +..|.+++++..
T Consensus 16 il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~ 64 (256)
T TIGR03873 16 IVDGV-DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVD 64 (256)
T ss_pred EEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEE
Confidence 34443 44688999999999999999999999998763 556667776653
No 263
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.5e-08 Score=87.23 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=38.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||++.+++... +..|.+++++..
T Consensus 22 il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 70 (272)
T PRK15056 22 ALRDA-SFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQP 70 (272)
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 34443 44688999999999999999999999998763 566777777653
No 264
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=3.5e-09 Score=91.46 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=39.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||||||||+..+++... +..|.+++++..
T Consensus 22 ~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~ 70 (280)
T PRK13649 22 ALFDV-NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTL 70 (280)
T ss_pred eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 45544 45789999999999999999999999998763 566777776653
No 265
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.78 E-value=2.2e-08 Score=84.30 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|++|+|||||++.+++... +..|.++++++.
T Consensus 17 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 65 (237)
T cd03252 17 ILDNI-SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHD 65 (237)
T ss_pred ceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCee
Confidence 34433 34689999999999999999999999998873 566677777653
No 266
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.78 E-value=1.6e-07 Score=74.81 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=56.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLE 142 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~ 142 (279)
++.|.|++|||||+|+.+++... ...++|+.+...++.+...++..... .++ ..+.. .....++.+.+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~em~~rI~~H~~-~R~---~~w~t--~E~~~~l~~~l~ 69 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDEMAERIARHRK-RRP---AHWRT--IETPRDLVSALK 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHHHHHHHHHHHH-hCC---CCceE--eecHHHHHHHHH
Confidence 47899999999999999998652 23499999998887654444322111 111 11111 112234444443
Q ss_pred hhhccCCCCeeEEEEeCcchhhccccc
Q psy2198 143 SQSGFIENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 143 ~~~~~~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+. .+.+.|+||+++.+....+.
T Consensus 70 ~~-----~~~~~VLIDclt~~~~n~l~ 91 (169)
T cd00544 70 EL-----DPGDVVLIDCLTLWVTNLLF 91 (169)
T ss_pred hc-----CCCCEEEEEcHhHHHHHhCC
Confidence 32 14578999999998765543
No 267
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.6e-08 Score=82.41 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=37.2
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
--+.+|++.+|.||||||||||++.++++-... ...|-+.+++++.
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI 70 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDI 70 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCccc
Confidence 368999999999999999999999999875332 2445777888865
No 268
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=2.1e-08 Score=84.03 Aligned_cols=49 Identities=27% Similarity=0.372 Sum_probs=39.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|+++.|.||+|+|||||++.+++... +..|.+++++..
T Consensus 18 ~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 66 (229)
T cd03254 18 VLKDI-NFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGID 66 (229)
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEe
Confidence 44443 45789999999999999999999999998763 566777777653
No 269
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.77 E-value=9e-09 Score=100.10 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KCSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~~~~i~~ 128 (279)
+--+++|+.++|+|++|||||||++.+++.+. +..|.+++++.+. .+...+++.+. +...+.. .+.+|+.+
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l 575 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence 34789999999999999999999999999884 7778888888753 23333333222 1111111 15667766
Q ss_pred Ee-cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccc--ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 129 TH-CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 129 ~~-~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
.. ..+.+++.+.++..- .. + +|+.+..-+.... .+...+..++|.-.++|+|- .+..+++.++++
T Consensus 576 ~~~~~~~~~i~~al~~~~-l~----~--~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall-----~~p~iliLDEpt 643 (710)
T TIGR03796 576 WDPTIPDADLVRACKDAA-IH----D--VITSRPGGYDAELAEGGANLSGGQRQRLEIARALV-----RNPSILILDEAT 643 (710)
T ss_pred CCCCCCHHHHHHHHHHhC-CH----H--HHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh-----hCCCEEEEECcc
Confidence 44 345666666555431 00 0 1111111111110 11122335667777888887 689999999999
Q ss_pred cccCC
Q psy2198 206 SAMTH 210 (279)
Q Consensus 206 ~~~~~ 210 (279)
+..+.
T Consensus 644 S~LD~ 648 (710)
T TIGR03796 644 SALDP 648 (710)
T ss_pred ccCCH
Confidence 98875
No 270
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.77 E-value=1.3e-07 Score=75.35 Aligned_cols=91 Identities=15% Similarity=0.248 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL 141 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i 141 (279)
.++.|.|++|||||+++..++.... ..++|+.+....+.+...++..++..- + .....+..+.++.+ .+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~~e~~~ri~~h~~~R-~--~~w~t~E~~~~l~~---~i 70 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPFDDEMAARIAHHRQRR-P--AHWQTVEEPLDLAE---LL 70 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCChHHHHHHHHHHHhcC-C--CCCeEecccccHHH---HH
Confidence 4789999999999999999986541 248899988777765444443322111 1 12223333444444 33
Q ss_pred HhhhccCCCCeeEEEEeCcchhhccc
Q psy2198 142 ESQSGFIENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 142 ~~~~~~~~~~~~lvvID~l~~~~~~~ 167 (279)
.... ...++|+||+++.+....
T Consensus 71 ~~~~----~~~~~VlID~Lt~~~~n~ 92 (170)
T PRK05800 71 RADA----APGRCVLVDCLTTWVTNL 92 (170)
T ss_pred Hhhc----CCCCEEEehhHHHHHHHH
Confidence 3321 235689999999986544
No 271
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.77 E-value=4.7e-08 Score=84.05 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=37.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC--------CeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH--------KGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~--------~gvlyi~~e~ 101 (279)
.|+.+ +--+.+|++++|+|+||||||||+..+++... +. .|.++++++.
T Consensus 16 il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 16 ILRDL-SLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred EEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEE
Confidence 34443 44689999999999999999999999998763 33 5667777653
No 272
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.76 E-value=2.3e-08 Score=82.23 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=77.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC-CCH-HHH------------------HHHHHh
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV-FPT-ARL------------------AQLCEL 114 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~-~~~-~~~------------------~~~~~~ 114 (279)
.--+++|++..+.|+||+||||..+.+...+- +..|.+.+++... ... .++ ..+++.
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~ 98 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAE 98 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHH
Confidence 44689999999999999999999999988773 5455555554322 000 010 011111
Q ss_pred CCCCCcc--------ccCcEEEEe--cCCHH-------HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 115 SPLAKPK--------CSDKIFITH--CYEFI-------DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 115 ~~~~~~~--------~~~~i~~~~--~~~~~-------~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
..++... .++++.+.. ..... +-..++..++ +.|+++|+|+.-+-.+.- ..
T Consensus 99 LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi----HePeLlILDEPFSGLDPV--------N~ 166 (300)
T COG4152 99 LKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI----HEPELLILDEPFSGLDPV--------NV 166 (300)
T ss_pred hcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh----cCCCEEEecCCccCCChh--------hH
Confidence 1111111 122222211 11122 2223333333 789999999976533211 23
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
..+++.+..++ +.|.|||+.+|.+...+.
T Consensus 167 elLk~~I~~lk----~~GatIifSsH~Me~vEe 195 (300)
T COG4152 167 ELLKDAIFELK----EEGATIIFSSHRMEHVEE 195 (300)
T ss_pred HHHHHHHHHHH----hcCCEEEEecchHHHHHH
Confidence 34444444444 489999999999988765
No 273
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.76 E-value=8.5e-09 Score=87.96 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=39.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... +..|.++++++.
T Consensus 20 ~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~ 68 (257)
T PRK10619 20 VLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQT 68 (257)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEE
Confidence 34443 45789999999999999999999999998763 566777777753
No 274
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.76 E-value=2.8e-08 Score=82.74 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.|++|+|||||+..+++... +..|.++++++.
T Consensus 19 ~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 67 (221)
T cd03244 19 VLKNI-SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVD 67 (221)
T ss_pred cccce-EEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEE
Confidence 44444 45789999999999999999999999998763 556667776653
No 275
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.76 E-value=2.7e-08 Score=94.46 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=40.1
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ +--+++|+.++|+||+|||||||+..+++.+. +..|.+++++.+
T Consensus 356 l~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~ 403 (574)
T PRK11160 356 LKGL-SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQP 403 (574)
T ss_pred eecc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEE
Confidence 4443 44789999999999999999999999999884 677888888764
No 276
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.75 E-value=3.1e-08 Score=93.22 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=84.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-ccc
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KCS 123 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~~ 123 (279)
|+.+ .--+++|+.++|+|++|||||||+..+++... +..|.+++++.+. .+.+.+.+.+. +...+.. .+.
T Consensus 338 l~~i-~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 338 LRPV-SFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred ccce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 4443 44789999999999999999999999999874 6777888887743 23333332221 1111111 144
Q ss_pred CcEEEEec-CCHHHHHHHHHhhh--------c-------------c-------------CCCCeeEEEEeCcchhhcccc
Q psy2198 124 DKIFITHC-YEFIDLKRTLESQS--------G-------------F-------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 124 ~~i~~~~~-~~~~~l~~~i~~~~--------~-------------~-------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
+|+.+..+ .+.+++.+.+...- + + .-.+++++++|+.++-.+..
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~- 492 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE- 492 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH-
Confidence 55554322 23333333332110 0 0 11578999999998754322
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....+.+.|+++. .++|+|+++|-.+..
T Consensus 493 ----------~~~~i~~~l~~~~--~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 493 ----------TEALVTEALRALA--QGRTVLLVTHRLALA 520 (529)
T ss_pred ----------HHHHHHHHHHHhc--CCCEEEEEecCHHHH
Confidence 1234556666553 589999999976543
No 277
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.75 E-value=1.7e-08 Score=95.99 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~ 128 (279)
+--+++|+.++|+|++|||||||+..+++.+. +..|.+++++.+. .+.+.+.+.+. +...+... +.+|+.+
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~ 439 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhc
Confidence 34689999999999999999999999999884 6778888887643 23333222221 11111111 5667766
Q ss_pred Ee--cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccc--cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 129 TH--CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNT--YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 129 ~~--~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
.. ..+.+++.+.+...- .. + +++++..-++.. ..+...+..+++.-.++|+|- .+..+++.+++
T Consensus 440 ~~~~~~~~~~i~~al~~~~-l~----~--~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall-----~~~~ililDEp 507 (582)
T PRK11176 440 ARTEQYSREQIEEAARMAY-AM----D--FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL-----RDSPILILDEA 507 (582)
T ss_pred CCCCCCCHHHHHHHHHHhC-cH----H--HHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH-----hCCCEEEEECc
Confidence 43 245566666555421 00 0 011111111110 011112235666677777777 58889999999
Q ss_pred ccccCC
Q psy2198 205 TSAMTH 210 (279)
Q Consensus 205 ~~~~~~ 210 (279)
++..+.
T Consensus 508 tsaLD~ 513 (582)
T PRK11176 508 TSALDT 513 (582)
T ss_pred cccCCH
Confidence 988875
No 278
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.75 E-value=2e-08 Score=95.65 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFIT 129 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~ 129 (279)
--+++|+.++|+|++|||||||+..+++.+. +..|.+++++.+. .+.+.+.+.+. +...+... +.+|+.+.
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~ 432 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcC
Confidence 3789999999999999999999999998884 6777888887643 23333333221 11111111 44555554
Q ss_pred ec-CCHHHHHHHHHhh-----h---c--c------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 130 HC-YEFIDLKRTLESQ-----S---G--F------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 130 ~~-~~~~~l~~~i~~~-----~---~--~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
++ .+.+++...+... + + . .-.+++++++|+.++-.+..
T Consensus 433 ~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~------- 505 (588)
T PRK13657 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE------- 505 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH-------
Confidence 32 2333333322210 0 0 0 11478888888888754321
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....+.+.|+++. .+.|+|+++|-.+...
T Consensus 506 ----t~~~i~~~l~~~~--~~~tvIiitHr~~~~~ 534 (588)
T PRK13657 506 ----TEAKVKAALDELM--KGRTTFIIAHRLSTVR 534 (588)
T ss_pred ----HHHHHHHHHHHHh--cCCEEEEEEecHHHHH
Confidence 2234555555543 4788888888765544
No 279
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.75 E-value=1.4e-08 Score=85.27 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=35.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEECCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP----HKGVLYICTES 101 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~----~~gvlyi~~e~ 101 (279)
-+.+|++++|.|+||+|||||+..+++... + ..|.+++++..
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~ 53 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRP 53 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEe
Confidence 578999999999999999999999998763 3 56667777654
No 280
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.75 E-value=1.6e-08 Score=98.30 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KCSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~~~~i~~ 128 (279)
+--+++|+.++|+||+|||||||+..+++.+. +..|.+++++.+. .+...+.+.+. +...+.. .+.+|+.+
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~ 577 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAY 577 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhc
Confidence 44789999999999999999999999999884 7778888888643 23232222221 1111111 15667776
Q ss_pred Eec-CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccc--ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 129 THC-YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 129 ~~~-~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
..+ .+.+++.+.++..- .. + +|+.+..-++... .+...+..++|.-.++|+|- .+..|++.++++
T Consensus 578 g~~~~~~e~i~~al~~a~-l~----~--~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl-----~~p~ILILDEpT 645 (711)
T TIGR00958 578 GLTDTPDEEIMAAAKAAN-AH----D--FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV-----RKPRVLILDEAT 645 (711)
T ss_pred CCCCCCHHHHHHHHHHcC-CH----H--HHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEEEccc
Confidence 543 34455555554321 00 0 1111111111111 11122335667777888887 689999999999
Q ss_pred cccCC
Q psy2198 206 SAMTH 210 (279)
Q Consensus 206 ~~~~~ 210 (279)
+..+.
T Consensus 646 SaLD~ 650 (711)
T TIGR00958 646 SALDA 650 (711)
T ss_pred cccCH
Confidence 98885
No 281
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.75 E-value=3.3e-08 Score=83.35 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=38.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||||||||+..+++... +..|.+++++..
T Consensus 18 ~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~ 66 (238)
T cd03249 18 ILKGL-SLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVD 66 (238)
T ss_pred ceece-EEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEe
Confidence 45444 44689999999999999999999999998763 566667776643
No 282
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.75 E-value=1.3e-08 Score=83.66 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=34.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYI 97 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi 97 (279)
.|+.+ +--+++|+++.|.||+|+|||||+..+++... +..|.+++
T Consensus 20 il~~~-s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~ 64 (204)
T cd03250 20 TLKDI-NLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSV 64 (204)
T ss_pred eeeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEE
Confidence 34443 44789999999999999999999999998763 44453433
No 283
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.75 E-value=4.4e-09 Score=87.79 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=34.3
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
--+.+|++++|.|+||+|||||+..+++... +..|.+++++.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~ 62 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGH 62 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCE
Confidence 3688999999999999999999999998763 55565666554
No 284
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.74 E-value=8.8e-09 Score=87.93 Aligned_cols=47 Identities=21% Similarity=0.430 Sum_probs=37.4
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
|+.+ .--+.+|++++|.|+||||||||++.+++... +..|.++++++
T Consensus 18 l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~ 64 (258)
T PRK13548 18 LDDV-SLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGR 64 (258)
T ss_pred eeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCE
Confidence 4443 44689999999999999999999999998763 55666777665
No 285
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.74 E-value=6.7e-08 Score=82.96 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=36.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||+|||||+..+++... +..|.+++++..
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~ 75 (268)
T PRK10419 32 SLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEP 75 (268)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence 44789999999999999999999999998763 556677777653
No 286
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.6e-07 Score=73.57 Aligned_cols=160 Identities=15% Similarity=0.115 Sum_probs=90.7
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC------CHHHHHHHHHhCCCCCcc--------
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF------PTARLAQLCELSPLAKPK-------- 121 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~------~~~~~~~~~~~~~~~~~~-------- 121 (279)
--+.||++..|+|++|||||||+..++..+. +..|.+.|....... .....+.++.-.-++-.+
T Consensus 27 F~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm 104 (258)
T COG4107 27 FDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRM 104 (258)
T ss_pred eeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcccccee
Confidence 3589999999999999999999998888875 344557776544331 111112222211111111
Q ss_pred -------c----------------------cCcEEEE--e------cCC--HHHHHHHHHhhhccCCCCeeEEEEeCcch
Q psy2198 122 -------C----------------------SDKIFIT--H------CYE--FIDLKRTLESQSGFIENKVGMIVIDSIAG 162 (279)
Q Consensus 122 -------~----------------------~~~i~~~--~------~~~--~~~l~~~i~~~~~~~~~~~~lvvID~l~~ 162 (279)
+ ++.+.+. + .++ ..+-....+. .-..|++|+.|+.+.
T Consensus 105 ~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARn----LVt~PrLvfMDEPTG 180 (258)
T COG4107 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARN----LVTRPRLVFMDEPTG 180 (258)
T ss_pred eeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHH----hccCCceEEecCCCC
Confidence 0 0111110 0 000 0111111111 124788999999876
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheee
Q psy2198 163 IFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLA 232 (279)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l 232 (279)
-.+ .+...++...++.+..+.+.++++++|.-.-..- +....+-.|..+++.-..|++=
T Consensus 181 GLD-----------VSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 181 GLD-----------VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred Ccc-----------hhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccccc
Confidence 432 2344668888899999999999999997654332 3455555566666555555443
No 287
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.74 E-value=1.1e-08 Score=95.68 Aligned_cols=144 Identities=19% Similarity=0.296 Sum_probs=81.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHH----HHHhCCCCCcc-
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQ----LCELSPLAKPK- 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~----~~~~~~~~~~~- 121 (279)
.|+.+ .--+.+|++++|+||||||||||++.+++... +..|.+++++.... +.....+ ++.+...+...
T Consensus 26 il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 26 VLKGI-DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 34444 44789999999999999999999999998763 56677777765321 1111111 11111111110
Q ss_pred -ccCcEEEEecCC--H-HHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 122 -CSDKIFITHCYE--F-IDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 122 -~~~~i~~~~~~~--~-~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+.+++.+..... . +.+.+.+.. ..+ .-.+++++++|+.+...+.
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~------- 173 (510)
T PRK15439 102 SVKENILFGLPKRQASMQKMKQLLAA-LGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTP------- 173 (510)
T ss_pred cHHHHhhcccccchHHHHHHHHHHHH-cCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH-------
Confidence 222222211000 0 111111110 000 1158999999999875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|+++++ .+.+||+++|......
T Consensus 174 ----~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~ 204 (510)
T PRK15439 174 ----AETERLFSRIRELLA-QGVGIVFISHKLPEIR 204 (510)
T ss_pred ----HHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence 233456677777765 5899999999877553
No 288
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.74 E-value=5e-09 Score=89.63 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=35.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|+.+ .--+++|++++|.|+||+|||||+..+++... +..|.+++++
T Consensus 39 il~~i-s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g 85 (264)
T PRK13546 39 ALDDI-SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNG 85 (264)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECC
Confidence 44443 44689999999999999999999999998763 4555455544
No 289
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.74 E-value=7.6e-09 Score=87.45 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=38.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||++.+++... +..|.+++++..
T Consensus 17 ~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~ 65 (242)
T TIGR03411 17 ALNDL-SLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTD 65 (242)
T ss_pred Eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCee
Confidence 34444 45789999999999999999999999998763 566677777653
No 290
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.74 E-value=9.1e-09 Score=96.10 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=39.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|+||||||||||++.+++... +..|.+++++..
T Consensus 19 ~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~ 67 (501)
T PRK10762 19 ALSGA-ALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKE 67 (501)
T ss_pred Eeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEE
Confidence 34444 44789999999999999999999999998773 566777777654
No 291
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.74 E-value=1.7e-08 Score=98.15 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=84.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~ 128 (279)
.--+++|+.++|+|++|||||||+..+++.+. +..|.+++++.+. .+...+++.+. +...+... +.+|+.+
T Consensus 494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l 570 (708)
T TIGR01193 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL 570 (708)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence 34789999999999999999999999999884 6778899988643 23333333221 11111111 5567766
Q ss_pred E--ecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccc--ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 129 T--HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 129 ~--~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
. ...+.+++.+.++..- .. + +|+.+..-+.... .+...+..++|.-.++|+|- .+..+++.+++
T Consensus 571 ~~~~~~~~~~i~~a~~~a~-l~----~--~i~~lp~gldt~i~e~G~~LSgGQrQRialARall-----~~p~iliLDE~ 638 (708)
T TIGR01193 571 GAKENVSQDEIWAACEIAE-IK----D--DIENMPLGYQTELSEEGSSISGGQKQRIALARALL-----TDSKVLILDES 638 (708)
T ss_pred cCCCCCCHHHHHHHHHHhC-CH----H--HHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh-----hCCCEEEEeCc
Confidence 5 2345566665554431 00 0 1111111111111 11112235667777888887 68899999999
Q ss_pred ccccCC
Q psy2198 205 TSAMTH 210 (279)
Q Consensus 205 ~~~~~~ 210 (279)
++..+.
T Consensus 639 Ts~LD~ 644 (708)
T TIGR01193 639 TSNLDT 644 (708)
T ss_pred cccCCH
Confidence 998875
No 292
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.5e-08 Score=89.71 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=83.7
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEEe
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFITH 130 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~~ 130 (279)
-+++|+.++|+|+||||||||+..+++... +..|.+.+++.+. .+.+.+.+-+. +.+.+... +.+|+.+.+
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~ 419 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR 419 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccC
Confidence 689999999999999999999999999884 5777787776543 33333333222 22222221 456766665
Q ss_pred cC-CHHHHHHHHHhhh-----cc----------------------------CCCCeeEEEEeCcchhhccccccchhhHH
Q psy2198 131 CY-EFIDLKRTLESQS-----GF----------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQR 176 (279)
Q Consensus 131 ~~-~~~~l~~~i~~~~-----~~----------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~ 176 (279)
+. +-+++.+.+++.- +. .-.+.++++.|+.++..+.+ .
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~e--------t 491 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE--------T 491 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHh--------H
Confidence 53 3344433333211 00 11357788888888754422 1
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 177 AHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 177 ~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+ ..+.+.|.++++ +.|+|+++|--.....
T Consensus 492 E---~~i~~~l~~l~~--~ktvl~itHrl~~~~~ 520 (559)
T COG4988 492 E---QIILQALQELAK--QKTVLVITHRLEDAAD 520 (559)
T ss_pred H---HHHHHHHHHHHh--CCeEEEEEcChHHHhc
Confidence 2 345566666664 5788888877666544
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.74 E-value=2.9e-08 Score=82.54 Aligned_cols=49 Identities=27% Similarity=0.446 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|++|+|||||+..+++... +..|.++++++.
T Consensus 16 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~ 64 (218)
T cd03290 16 TLSNI-NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKN 64 (218)
T ss_pred ceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcc
Confidence 34443 44689999999999999999999999998873 556677777653
No 294
>KOG0055|consensus
Probab=98.74 E-value=2.4e-08 Score=98.57 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=95.6
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc--------ccCcE
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPLAKPK--------CSDKI 126 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~--------~~~~i 126 (279)
-+++|+.++|+|++||||||+...+...+- |..|.+++|+++. ++.+.++. +.++-.+ +.+|+
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~lr~----~iglV~QePvlF~~tI~eNI 447 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWLRS----QIGLVSQEPVLFATTIRENI 447 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHHHh----hcCeeeechhhhcccHHHHH
Confidence 699999999999999999999999999984 8888999999865 34333333 2222222 45666
Q ss_pred EEEecC-CHHHHHHHHHhhh------------cc----------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 127 FITHCY-EFIDLKRTLESQS------------GF----------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 127 ~~~~~~-~~~~l~~~i~~~~------------~~----------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
.+-++. +.+++.+..+..- .. .-.+|+++++|+.++-.+..
T Consensus 448 ~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~---- 523 (1228)
T KOG0055|consen 448 RYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE---- 523 (1228)
T ss_pred hcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH----
Confidence 665533 3344433332110 00 11589999999998865432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhhe
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRD 230 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~rl 230 (279)
..+. +..+|.+.. .|.|.|+++|--+.... +......-|.+++......+
T Consensus 524 ----se~~---Vq~ALd~~~--~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 524 ----SERV---VQEALDKAS--KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDEL 574 (1228)
T ss_pred ----HHHH---HHHHHHHhh--cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHH
Confidence 2233 334555544 46688888887776654 34444444555544444333
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.73 E-value=9.9e-09 Score=95.62 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=39.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||||||||++.+++... +..|.+++++..
T Consensus 13 il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 61 (491)
T PRK10982 13 ALDNV-NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKE 61 (491)
T ss_pred eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEE
Confidence 34444 44789999999999999999999999998763 567777777754
No 296
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.5e-08 Score=96.96 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=89.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHH------HHhCC--CC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQL------CELSP--LA 118 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~------~~~~~--~~ 118 (279)
.|+.+ .--+++|++++|+|+||||||||++.+++... +..|.++++++.. .+......+ +.+.. .+
T Consensus 339 ~l~~v-s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 339 AVEKV-SFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred EEeee-EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 34444 44789999999999999999999999998763 5667777766532 121111111 11110 11
Q ss_pred Ccc--ccCcEEE----EecCCHH----HHHHHHHhhhcc-------------------------CCCCeeEEEEeCcchh
Q psy2198 119 KPK--CSDKIFI----THCYEFI----DLKRTLESQSGF-------------------------IENKVGMIVIDSIAGI 163 (279)
Q Consensus 119 ~~~--~~~~i~~----~~~~~~~----~l~~~i~~~~~~-------------------------~~~~~~lvvID~l~~~ 163 (279)
.+. +.+++.. ....... .+.+.+.. ..+ ...+++++++|+.+..
T Consensus 415 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~-~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~ 493 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLER-VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493 (623)
T ss_pred CCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 111 1111100 0000111 11111111 000 1158999999999875
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchh
Q psy2198 164 FRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYE 223 (279)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~ 223 (279)
.+. ....++.+.|++++++++.+||+++|....... +.......|.+.+
T Consensus 494 LD~-----------~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~ 544 (623)
T PRK10261 494 LDV-----------SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544 (623)
T ss_pred CCH-----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 432 234567788888888889999999998776543 3344444455443
No 297
>PF13479 AAA_24: AAA domain
Probab=98.73 E-value=8.6e-08 Score=79.43 Aligned_cols=124 Identities=22% Similarity=0.195 Sum_probs=77.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRT 140 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 140 (279)
+-.+.|+|+||+|||||+..+ +.++|+++|.... .+. ...+.......+.+++.+.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g~~-----~~~---------~~~~~~~i~i~s~~~~~~~ 58 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENGSD-----SLK---------FLDDGDVIPITSWEDFLEA 58 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCCcc-----chh---------hhcCCCeeCcCCHHHHHHH
Confidence 345899999999999998855 3489999997621 010 1112222334478888887
Q ss_pred HHhhhccCCCCeeEEEEeCcchhhcc---ccc----------cc-hhhHHHHHH-HHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 141 LESQSGFIENKVGMIVIDSIAGIFRN---TYA----------ED-KYVQRAHDM-RDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 141 i~~~~~~~~~~~~lvvID~l~~~~~~---~~~----------~~-~~~~~~~~~-~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
+..+.. ...+++.||||+++.+... ... +. +....+..+ ..+.+.++++.+..+..||++.|..
T Consensus 59 ~~~l~~-~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~ 137 (213)
T PF13479_consen 59 LDELEE-DEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAK 137 (213)
T ss_pred HHHHHh-ccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 766532 3568999999999886321 111 00 001122233 3344445556666899999999998
Q ss_pred cccC
Q psy2198 206 SAMT 209 (279)
Q Consensus 206 ~~~~ 209 (279)
....
T Consensus 138 ~~~~ 141 (213)
T PF13479_consen 138 EEED 141 (213)
T ss_pred EEEc
Confidence 7665
No 298
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.73 E-value=1.6e-08 Score=86.16 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=34.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEECC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP----HKGVLYICTE 100 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~----~~gvlyi~~e 100 (279)
+--+.+|++++|.|+||+|||||+..+++... + ..|.+++++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCe
Confidence 34689999999999999999999999998763 3 5566666654
No 299
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.73 E-value=4.8e-08 Score=74.26 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=75.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhccc---CCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVS---QPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~---~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
+.+.++.|+|++|+|||+++..++...... .....++|++.......+.+.+-+....+.... . ..+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---~-----~~~~~ 73 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK---S-----RQTSD 73 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS---S-----TS-HH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc---c-----cCCHH
Confidence 356789999999999999999999877410 003458888777554444444333332222111 1 45667
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
++.+.+.+.+ ...+..++|||++..+. . ..++..|+.+..+.++.+|++.++
T Consensus 74 ~l~~~~~~~l--~~~~~~~lviDe~~~l~--~-------------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 74 ELRSLLIDAL--DRRRVVLLVIDEADHLF--S-------------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHH--HHCTEEEEEEETTHHHH--T-------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHHH--HhcCCeEEEEeChHhcC--C-------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 7777666665 33445899999998753 0 346666777777899999999876
No 300
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.73 E-value=1.5e-08 Score=80.60 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=41.7
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
|+..|+.+ +--+.+|++-.|+||||+||||++-.+++... +..|.+|+++.
T Consensus 17 GF~Aln~l-s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~ 67 (249)
T COG4674 17 GFKALNDL-SFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGD 67 (249)
T ss_pred ceeeeeee-EEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCc
Confidence 55666665 55789999999999999999999999998874 66677777773
No 301
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.72 E-value=9.6e-09 Score=82.01 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=90.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHH----HHhCCCCCcc--ccCcEEE
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQL----CELSPLAKPK--CSDKIFI 128 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~----~~~~~~~~~~--~~~~i~~ 128 (279)
.+.+|+++.+.||||+||||..+.+++... ++.|.+++++.+.. +.-+..++ +.+..+...+ +.+|+..
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~ 102 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA 102 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHH
Confidence 689999999999999999999999998885 78889999988752 22222221 1111111111 2223211
Q ss_pred Ee---cCC------HHHHHHHHHhh-----hc---------------c---CCCCeeEEEEeCcchhhccccccchhhHH
Q psy2198 129 TH---CYE------FIDLKRTLESQ-----SG---------------F---IENKVGMIVIDSIAGIFRNTYAEDKYVQR 176 (279)
Q Consensus 129 ~~---~~~------~~~l~~~i~~~-----~~---------------~---~~~~~~lvvID~l~~~~~~~~~~~~~~~~ 176 (279)
.- ..+ -.++.+++.+. .. + ..-+|+++.+|+.-+-.+.- .
T Consensus 103 vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi--------a 174 (243)
T COG1137 103 VLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI--------A 174 (243)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch--------h
Confidence 10 000 00111111110 00 0 12479999999876643211 3
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhh
Q psy2198 177 AHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDM 228 (279)
Q Consensus 177 ~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~ 228 (279)
...+++++..|+ +.|+.|++++|..++.-+ +..+....|.++.+....
T Consensus 175 V~dIq~iI~~L~----~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ 224 (243)
T COG1137 175 VIDIQRIIKHLK----DRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPE 224 (243)
T ss_pred HHHHHHHHHHHH----hCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHH
Confidence 345566666665 479999999999887654 556666666665544433
No 302
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=2.3e-08 Score=85.18 Aligned_cols=44 Identities=30% Similarity=0.564 Sum_probs=36.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||+|||||++.+++... +..|.+++++..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 65 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKP 65 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEE
Confidence 44689999999999999999999999998763 556667776653
No 303
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.71 E-value=5.1e-08 Score=92.57 Aligned_cols=138 Identities=16% Similarity=0.224 Sum_probs=81.1
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHH---HhCCCCCcc-ccCcEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLC---ELSPLAKPK-CSDKIFIT 129 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~---~~~~~~~~~-~~~~i~~~ 129 (279)
--+++|+.++|+|++|+|||||+..+++... +..|.+++++.+. .+...+.+.+ .+...+... +.+|+.+.
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~ 429 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYG 429 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcC
Confidence 3689999999999999999999999999884 7778888887542 2323322221 121111111 44555554
Q ss_pred e--cCCHHHHHHHHHhh-----hc-c----------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 130 H--CYEFIDLKRTLESQ-----SG-F----------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 130 ~--~~~~~~l~~~i~~~-----~~-~----------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+ ..+.+++.+.++.. +. . .-.+++++++|+.++-.+..
T Consensus 430 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~------ 503 (571)
T TIGR02203 430 RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE------ 503 (571)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH------
Confidence 3 23444444433321 00 0 11467888888887754321
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....+.+.|+++. .+.|+|+++|-.....
T Consensus 504 -----~~~~i~~~L~~~~--~~~tiIiitH~~~~~~ 532 (571)
T TIGR02203 504 -----SERLVQAALERLM--QGRTTLVIAHRLSTIE 532 (571)
T ss_pred -----HHHHHHHHHHHHh--CCCEEEEEehhhHHHH
Confidence 2234556666553 4678888888765443
No 304
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.71 E-value=1.8e-08 Score=95.48 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=96.1
Q ss_pred CceeccCChh----hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH
Q psy2198 40 EIVVSTGSEK----FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE 113 (279)
Q Consensus 40 ~~~i~tg~~~----LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~ 113 (279)
...++.+++. |+.+ .-.+++|+.++|+||+||||||++..++..+- +..|.+++|+.+. .+...+++.+.
T Consensus 331 f~~vsf~y~~~~~vl~~i-s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 331 FENVSFSYPGKKPVLKDI-SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred EEEEEEEcCCCCccccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHHHHHhcc
Confidence 4456666653 4433 44799999999999999999999999999884 5677777766533 34443333332
Q ss_pred ---hCCC-CCccccCcEEEEec-CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccc--ccchhhHHHHHHHHHHHH
Q psy2198 114 ---LSPL-AKPKCSDKIFITHC-YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHY 186 (279)
Q Consensus 114 ---~~~~-~~~~~~~~i~~~~~-~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~--~~~~~~~~~~~~~~l~~~ 186 (279)
|... +...+.+|+.+.++ .+.+++.+.++..-.. + +|..+..-+.... .+...+..++|.-.++|+
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~-----d--~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAH-----E--FIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChH-----H--HHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 1111 11116678877766 4666777766654100 0 1111111111111 122223467788888888
Q ss_pred HHHHHHHcCcEEEEecccccccCC
Q psy2198 187 LHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 187 L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+- .+..+++.+++++..+.
T Consensus 480 ll-----~~~~ILILDEaTSalD~ 498 (567)
T COG1132 480 LL-----RNPPILILDEATSALDT 498 (567)
T ss_pred Hh-----cCCCEEEEeccccccCH
Confidence 88 68899999999999886
No 305
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.71 E-value=4.7e-08 Score=92.74 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+--+++|+.++|+||+|||||||+..+++.+. +..|.+++++..
T Consensus 335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~ 378 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIP 378 (569)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEE
Confidence 34689999999999999999999999998874 666777777653
No 306
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.71 E-value=3.3e-08 Score=82.31 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=36.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.||+|+|||||+..+++... +..|.++++++.
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~ 67 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTD 67 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEE
Confidence 34689999999999999999999999998763 566777777653
No 307
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.71 E-value=1.7e-08 Score=85.71 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=35.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||||||||+..+++.. + . .|.++++++.
T Consensus 16 sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~-~-~G~i~~~g~~ 58 (248)
T PRK03695 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLL--P-G-SGSIQFAGQP 58 (248)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--C-C-CeEEEECCEe
Confidence 3468999999999999999999999998865 2 3 5777777764
No 308
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.70 E-value=1.4e-08 Score=95.14 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=39.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++++.
T Consensus 20 il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~ 68 (510)
T PRK09700 20 ALKSV-NLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNIN 68 (510)
T ss_pred Eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEE
Confidence 34444 45789999999999999999999999998773 566777777654
No 309
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.70 E-value=4.2e-08 Score=95.21 Aligned_cols=143 Identities=14% Similarity=0.195 Sum_probs=83.8
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-ccc
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KCS 123 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~~ 123 (279)
|+.+ +--+++|+.++|+|++|||||||+..+++... +..|.+++++.+. ++...+++.+. +...+.. .+.
T Consensus 473 l~~i-~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 473 LSNL-NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred cccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 4443 44789999999999999999999999999884 6778888888643 33333333221 1111111 144
Q ss_pred CcEEEEe-cCCHHHHHHHHHhh-----hc-----c------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 124 DKIFITH-CYEFIDLKRTLESQ-----SG-----F------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 124 ~~i~~~~-~~~~~~l~~~i~~~-----~~-----~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
+|+.+.. ..+.+++.+.+... +. . .-.+++++++|+.++-.+..
T Consensus 549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~- 627 (694)
T TIGR01846 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE- 627 (694)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH-
Confidence 5555433 23344444333211 00 0 01478888888887643321
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....+.+.|+++. .++|+|+++|-.+...
T Consensus 628 ----------~~~~i~~~l~~~~--~~~t~i~itH~~~~~~ 656 (694)
T TIGR01846 628 ----------SEALIMRNMREIC--RGRTVIIIAHRLSTVR 656 (694)
T ss_pred ----------HHHHHHHHHHHHh--CCCEEEEEeCChHHHH
Confidence 2244556666553 4788888888765543
No 310
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.70 E-value=5.4e-08 Score=92.49 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=37.1
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
--+++|+.++|+|++|+|||||++.+++.+. +..|.+++++..
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~ 403 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVD 403 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEE
Confidence 3689999999999999999999999999874 666778887753
No 311
>KOG0057|consensus
Probab=98.70 E-value=6.2e-08 Score=87.94 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=57.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCC---CC-CccccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSP---LA-KPKCSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~---~~-~~~~~~~i~~ 128 (279)
..-++.|+-++|+|+|||||||+++.+.... ...|-+++|+.+. .+.+-+++.++-.+ .+ ...++.|+.+
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~Y 447 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKY 447 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhc
Confidence 4579999999999999999999999999888 5778999999865 33333444332111 11 1115677777
Q ss_pred EecC-CHHHHHHHHHh
Q psy2198 129 THCY-EFIDLKRTLES 143 (279)
Q Consensus 129 ~~~~-~~~~l~~~i~~ 143 (279)
.++. +.+++.+.+++
T Consensus 448 Gn~sas~eeV~e~~k~ 463 (591)
T KOG0057|consen 448 GNPSASDEEVVEACKR 463 (591)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 6654 44555555543
No 312
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.3e-08 Score=95.17 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=39.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||||||||++.+++... +..|.+++++..
T Consensus 19 il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 67 (501)
T PRK11288 19 ALDDI-SFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQE 67 (501)
T ss_pred EEeee-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEE
Confidence 45554 55799999999999999999999999998763 556667776643
No 313
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.6e-08 Score=94.56 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=38.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ-PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|+||||||||||++.+++... + +..|.+++++..
T Consensus 20 il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~ 70 (506)
T PRK13549 20 ALDNV-SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HGTYEGEIIFEGEE 70 (506)
T ss_pred eecce-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEE
Confidence 44544 45789999999999999999999999998762 2 256777777653
No 314
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2.5e-08 Score=83.54 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=83.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEE------EECCCCC--C-HHHHHHHHHhCCCCCcc--ccCc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLY------ICTESVF--P-TARLAQLCELSPLAKPK--CSDK 125 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvly------i~~e~~~--~-~~~~~~~~~~~~~~~~~--~~~~ 125 (279)
.++-..+++|+|++|+||||+.+.+++... ++.|.+- +|.+... + .+|.-.+..+...+.+- +..|
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 455568999999999999999999998874 5655444 4444331 1 11211222221112111 4455
Q ss_pred EEEEecCC----HHHHHHHHH--hhh---cc---------------CCCCeeEEEEeCcchhhccccccchhhHHHHHHH
Q psy2198 126 IFITHCYE----FIDLKRTLE--SQS---GF---------------IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMR 181 (279)
Q Consensus 126 i~~~~~~~----~~~l~~~i~--~~~---~~---------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~ 181 (279)
+.|..... ++++..++- .++ +. --..|+++..|+.-+..+.. | -+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~--------R---K~ 165 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP--------R---KR 165 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc--------h---hh
Confidence 55544333 222222210 000 00 11468899999876643321 1 25
Q ss_pred HHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 182 DLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 182 ~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+++-.|.++.++.+++|++++|...+..-
T Consensus 166 EilpylERL~~e~~IPIlYVSHS~~Ev~R 194 (352)
T COG4148 166 EILPYLERLRDEINIPILYVSHSLDEVLR 194 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCHHHHHh
Confidence 68899999999999999999999887653
No 315
>PRK13409 putative ATPase RIL; Provisional
Probab=98.69 E-value=2.6e-08 Score=94.33 Aligned_cols=138 Identities=12% Similarity=0.138 Sum_probs=77.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE-------CCCC-CCHHHHHHHHHhC-CCCCcc----
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC-------TESV-FPTARLAQLCELS-PLAKPK---- 121 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~-------~e~~-~~~~~~~~~~~~~-~~~~~~---- 121 (279)
.+-+.+|++++|.||||+|||||++.+++... +..|.++++ -+.. .....+.+.+... ......
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 435 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS 435 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHH
Confidence 55689999999999999999999999998763 455544332 1100 0000111111100 000000
Q ss_pred -ccCcEEE-------EecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHH
Q psy2198 122 -CSDKIFI-------THCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSI 192 (279)
Q Consensus 122 -~~~~i~~-------~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~ 192 (279)
.++.+.+ ....+-.+... .+... ...+++++++|+.+...+. .....+.+.|+++++
T Consensus 436 ~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAra---L~~~p~llLLDEPt~~LD~-----------~~~~~l~~~l~~l~~ 501 (590)
T PRK13409 436 EIIKPLQLERLLDKNVKDLSGGELQRVAIAAC---LSRDADLYLLDEPSAHLDV-----------EQRLAVAKAIRRIAE 501 (590)
T ss_pred HHHHHCCCHHHHhCCcccCCHHHHHHHHHHHH---HhcCCCEEEEeCCccCCCH-----------HHHHHHHHHHHHHHH
Confidence 0000000 01112111111 11111 2258999999999985432 244668888888888
Q ss_pred HcCcEEEEecccccccC
Q psy2198 193 KHRIVVICTNQVTSAMT 209 (279)
Q Consensus 193 ~~~~~vi~v~h~~~~~~ 209 (279)
+.+.++|+++|......
T Consensus 502 ~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 502 EREATALVVDHDIYMID 518 (590)
T ss_pred hCCCEEEEEeCCHHHHH
Confidence 88999999999876543
No 316
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.68 E-value=3e-08 Score=92.81 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=36.8
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.||||||||||++.+++... +..|.++++++.
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~ 326 (510)
T PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKD 326 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEE
Confidence 34689999999999999999999999998763 566777877653
No 317
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.68 E-value=5.3e-08 Score=92.62 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=36.7
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
--+++|+.++|+||+|+|||||+..+++... +..|.+++++.+
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~ 398 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGID 398 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEE
Confidence 3689999999999999999999999998874 667777777653
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=98.67 E-value=3.4e-08 Score=103.10 Aligned_cols=157 Identities=12% Similarity=0.112 Sum_probs=95.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~ 128 (279)
.--+++|+.++|+|++|||||||+..+.+.+- +..|.+++|+.+. .+...+++.+. +...+... +.+|+..
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~ 1335 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDP 1335 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCc
Confidence 34799999999999999999999999999874 6778899988754 23333333221 11111111 3445544
Q ss_pred EecCCHHHHHHHHHhhh--------c--c------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 129 THCYEFIDLKRTLESQS--------G--F------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 129 ~~~~~~~~l~~~i~~~~--------~--~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
....+.+++.+.++..- + + .-.+++++++|+.++-.+..
T Consensus 1336 ~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~------- 1408 (1622)
T PLN03130 1336 FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR------- 1408 (1622)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH-------
Confidence 44445455554443210 0 0 01468999999998854321
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhh
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHD 227 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~ 227 (279)
.. ..+.+.|++.. .++|+|+++|-...... +.......|.+.+....
T Consensus 1409 -Te---~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1409 -TD---ALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTP 1456 (1622)
T ss_pred -HH---HHHHHHHHHHC--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCH
Confidence 11 23445555543 48999999998776654 44444455555554333
No 319
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2e-08 Score=85.30 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=35.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
+--+.+|++++|+|+||+|||||+..+++.... |. +..|.++++++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~ 72 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN 72 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe
Confidence 346899999999999999999999999987631 00 145667777654
No 320
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.67 E-value=4.5e-08 Score=92.40 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=80.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ +--+++|+.++|+|++|||||||+..+++.+. +..|.+++++... .+...+.+.+. +...+.. .+
T Consensus 333 ~l~~~-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 333 TLRGI-SFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred ccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 34443 44789999999999999999999999999874 6667777776532 22222222211 1111111 14
Q ss_pred cCcEEEEec-CCHHHHHHHHHhhh-----ccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCc
Q psy2198 123 SDKIFITHC-YEFIDLKRTLESQS-----GFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRI 196 (279)
Q Consensus 123 ~~~i~~~~~-~~~~~l~~~i~~~~-----~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~ 196 (279)
.+|+.+... .+.+++.+.++..- +....+.+-. +++ .+...+..+++.-.++++|- .+.
T Consensus 409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~-~~~---------~g~~LSgGq~qrl~lARall-----~~~ 473 (544)
T TIGR01842 409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTV-IGP---------GGATLSGGQRQRIALARALY-----GDP 473 (544)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccc-cCC---------CcCCCCHHHHHHHHHHHHHh-----cCC
Confidence 455543332 34455554443221 0001111110 111 01112235666677888876 688
Q ss_pred EEEEecccccccCC
Q psy2198 197 VVICTNQVTSAMTH 210 (279)
Q Consensus 197 ~vi~v~h~~~~~~~ 210 (279)
.+++.+++++..+.
T Consensus 474 ~ililDEpts~LD~ 487 (544)
T TIGR01842 474 KLVVLDEPNSNLDE 487 (544)
T ss_pred CEEEEeCCccccCH
Confidence 99999999988875
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.67 E-value=3.8e-07 Score=77.62 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=35.5
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEE
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLY 96 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvly 96 (279)
..|+.+ . -+.+|++++|.||||+|||||++.+++... +..|.++
T Consensus 15 ~~l~~i-~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~ 58 (255)
T cd03236 15 FKLHRL-P-VPREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFD 58 (255)
T ss_pred hhhhcC-C-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEe
Confidence 456666 3 378999999999999999999999999874 5566554
No 322
>PLN03232 ABC transporter C family member; Provisional
Probab=98.66 E-value=3.5e-08 Score=102.67 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=92.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFIT 129 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~ 129 (279)
--+++|+.++|+|++|||||||+..+.+.+. +..|.+++|+.+. .+...+++.+. |...+... +.+|+...
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~ 1333 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF 1333 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC
Confidence 3789999999999999999999999999874 6778899988754 23333333221 11111111 34455443
Q ss_pred ecCCHHHHHHHHHhh-----hc-----c------------------------CCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 130 HCYEFIDLKRTLESQ-----SG-----F------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 130 ~~~~~~~l~~~i~~~-----~~-----~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
...+.+++.+.++.. +. + .-.+++++++|+.++-.+.+
T Consensus 1334 ~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~-------- 1405 (1495)
T PLN03232 1334 SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR-------- 1405 (1495)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH--------
Confidence 344445554444321 00 0 00478899999988754321
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhh
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHD 227 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~ 227 (279)
.. ..+.+.|++.. .++|+|+++|--+.... +.......|.+.+....
T Consensus 1406 Te---~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~ 1453 (1495)
T PLN03232 1406 TD---SLIQRTIREEF--KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSP 1453 (1495)
T ss_pred HH---HHHHHHHHHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 12 23444455443 48999999998766654 44444445555554433
No 323
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2e-08 Score=86.17 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=39.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||+|||||++.+++....+ .+..|.++++++.
T Consensus 34 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 34 ALFDV-DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred EEEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE
Confidence 34443 4478999999999999999999999999876310 1356777887754
No 324
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2.5e-08 Score=85.23 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=38.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.|+||+|||||++.+++.... |. +..|.++++++.
T Consensus 28 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~ 81 (260)
T PRK10744 28 ALKNI-NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN 81 (260)
T ss_pred Eeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE
Confidence 34444 457899999999999999999999999987631 11 345677777654
No 325
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=4.4e-08 Score=83.75 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=36.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP----HKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~----~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|+|+||+|||||+..+++... +. ..|.++++++.
T Consensus 23 l~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 23 LEGV-SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE--LESEVRVEGRVEFFNQN 75 (261)
T ss_pred eece-EEEEcCCcEEEEECCCCCCHHHHHHHHhcccC--CCCCccccceEEECCEE
Confidence 4443 44689999999999999999999999998863 21 24566666643
No 326
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2.6e-08 Score=84.86 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=38.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ---PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~---~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.|+||||||||++.+++... |. +..|.++++++.
T Consensus 22 il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 22 ALNNI-NIKILKNSITALIGPSGCGKSTFLRTLNRMND-LVEGIKIEGNVIYEGKN 75 (254)
T ss_pred eecce-eeEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCcCCCCceEEEECCEe
Confidence 34443 44689999999999999999999999998763 10 135667777653
No 327
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.65 E-value=3.9e-08 Score=82.27 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=39.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.|+.+ .--+.+|++++|+||||||||||+..+++......+..|.++++++..
T Consensus 22 ~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 22 ILNDV-SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred cccCc-eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 44444 457899999999999999999999999987621014567777777643
No 328
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.65 E-value=9.4e-08 Score=89.92 Aligned_cols=52 Identities=29% Similarity=0.314 Sum_probs=39.4
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEECCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ---PHKGVLYICTES 101 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~---~~~gvlyi~~e~ 101 (279)
+.|+.+ .--+.+|++++|+||||||||||++.+++... |. +..|.++++++.
T Consensus 23 ~~l~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~-~~~~~~~~G~i~~~g~~ 77 (529)
T PRK15134 23 TVVNDV-SLQIEAGETLALVGESGSGKSVTALSILRLLP-SPPVVYPSGDIRFHGES 77 (529)
T ss_pred eeeece-EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCcCCccceEEEECCEe
Confidence 345554 45789999999999999999999999998773 10 145677777654
No 329
>KOG0055|consensus
Probab=98.65 E-value=1.2e-07 Score=93.77 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=98.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFIT 129 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~ 129 (279)
--+++|+.++|+||+||||||....+-..+- +..|.+.+|+.+. .+.+.+++-+. |.+-+... +.+|+.|-
T Consensus 1011 l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG 1087 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYG 1087 (1228)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhcc
Confidence 3789999999999999999999999998884 8888999998865 45555544332 11111111 56777776
Q ss_pred -ecCCHHHHHHHHHhhhc------c----------------------------CCCCeeEEEEeCcchhhccccccchhh
Q psy2198 130 -HCYEFIDLKRTLESQSG------F----------------------------IENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 130 -~~~~~~~l~~~i~~~~~------~----------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
...+.+++.+..+..-. + .-.+|+++++|+-+.-.+.+
T Consensus 1088 ~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDse------- 1160 (1228)
T KOG0055|consen 1088 SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSE------- 1160 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhh-------
Confidence 23466666665543210 0 01477888888877654432
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhhee
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRDL 231 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~rl~ 231 (279)
..+.+++.+...+ .|.|.|++.|--+.... +...+...|.+.++.....++
T Consensus 1161 -SErvVQeALd~a~-----~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1161 -SERVVQEALDRAM-----EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred -hHHHHHHHHHHhh-----cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHH
Confidence 3334343333333 57777777776666554 445555556666655554444
No 330
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.5e-08 Score=86.43 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=36.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc-ccC-CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ-VSQ-PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~-~~~-~~~gvlyi~~e~ 101 (279)
.--+.+|++++|+|+||+|||||+..+++... .|. +..|.++++++.
T Consensus 59 sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~ 107 (286)
T PRK14275 59 NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED 107 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEE
Confidence 34789999999999999999999999998642 121 256677777653
No 331
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.65 E-value=7.6e-08 Score=82.79 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=39.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.|+.+ +--+++|++++|+|++|+|||||++.+++... ..|.+++++...
T Consensus 19 ~l~~i-sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~----~~G~I~i~g~~i 67 (275)
T cd03289 19 VLENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSW 67 (275)
T ss_pred ceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEh
Confidence 34443 44689999999999999999999999998872 457788888643
No 332
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.65 E-value=1.6e-07 Score=80.31 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEE-EEecCCHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIF-ITHCYEFIDLKR 139 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~-~~~~~~~~~l~~ 139 (279)
..++|.||||||||||++.++.... +..|.+++++...........+......+... +..+.. +..+.....+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM 188 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHH
Confidence 5789999999999999999998884 55667777776542111112222211111111 111111 122333444444
Q ss_pred HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccc
Q psy2198 140 TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALG 219 (279)
Q Consensus 140 ~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g 219 (279)
.+.. .+|+++++|++.. ...+..+.+.+. .|.++|+++|...-.+ -..+|.+.
T Consensus 189 ~i~~------~~P~villDE~~~--------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~~~--~~~r~~~~ 241 (270)
T TIGR02858 189 LIRS------MSPDVIVVDEIGR--------------EEDVEALLEALH-----AGVSIIATAHGRDVED--LYKRPVFK 241 (270)
T ss_pred HHHh------CCCCEEEEeCCCc--------------HHHHHHHHHHHh-----CCCEEEEEechhHHHH--HHhChHHH
Confidence 4433 4789999999642 122233333332 6999999999643322 34455555
Q ss_pred cchhhhhhhhee-eec
Q psy2198 220 LTYERAHDMRDL-AHY 234 (279)
Q Consensus 220 ~~~~~~~~~rl~-l~k 234 (279)
..+......|++ +.+
T Consensus 242 ~l~~~~~~~r~i~L~~ 257 (270)
T TIGR02858 242 ELIENEAFERYVVLSR 257 (270)
T ss_pred HHHhcCceEEEEEEec
Confidence 555544444444 443
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.64 E-value=6.5e-08 Score=90.16 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=38.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+.+|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 18 il~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~ 66 (490)
T PRK10938 18 TLQLP-SLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSH 66 (490)
T ss_pred ecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcc
Confidence 45544 44789999999999999999999999998763 555666666543
No 334
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=1.2e-07 Score=74.71 Aligned_cols=147 Identities=10% Similarity=0.118 Sum_probs=86.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC------------CCHHHHHHHHHhCCCCCcc---
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV------------FPTARLAQLCELSPLAKPK--- 121 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~------------~~~~~~~~~~~~~~~~~~~--- 121 (279)
--..|+++.|+|.+|||||||++.+-..- .+..|.+.+.+|+. .+.+.+.++..+. ++-.+
T Consensus 28 ~A~~GdVisIIGsSGSGKSTfLRCiN~LE---~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L-~mVFQ~FN 103 (256)
T COG4598 28 QANAGDVISIIGSSGSGKSTFLRCINFLE---KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRL-GMVFQHFN 103 (256)
T ss_pred ecCCCCEEEEecCCCCchhHHHHHHHhhc---CCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHh-hHhhhhcc
Confidence 35689999999999999999999554433 36677788777653 3455554443221 11111
Q ss_pred ------ccCcEEEE---------------------------------ecC-CHHHHHHHHHhhhccCCCCeeEEEEeCcc
Q psy2198 122 ------CSDKIFIT---------------------------------HCY-EFIDLKRTLESQSGFIENKVGMIVIDSIA 161 (279)
Q Consensus 122 ------~~~~i~~~---------------------------------~~~-~~~~l~~~i~~~~~~~~~~~~lvvID~l~ 161 (279)
+++|+.-. ... .-.+-...|.+.+. -.|+++..|+.+
T Consensus 104 LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa---meP~vmLFDEPT 180 (256)
T COG4598 104 LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA---MEPEVMLFDEPT 180 (256)
T ss_pred hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh---cCCceEeecCCc
Confidence 22222110 000 11222233333322 367888888888
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeeccc
Q psy2198 162 GIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
+..+. ..+.++++.++++|++ |.|+++++|-..-.. ......+|+++..
T Consensus 181 SALDP-----------ElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR--------------~Vss~v~fLh~G~ 229 (256)
T COG4598 181 SALDP-----------ELVGEVLKVMQDLAEE-GRTMVVVTHEMGFAR--------------DVSSHVIFLHQGK 229 (256)
T ss_pred ccCCH-----------HHHHHHHHHHHHHHHh-CCeEEEEeeehhHHH--------------hhhhheEEeecce
Confidence 75433 3456778888888875 888888888765443 2345666777643
No 335
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.64 E-value=4.1e-07 Score=74.49 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=26.1
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
-+..|+++.|+||||+|||||++.+++...
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 356689999999999999999999987663
No 336
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.9e-08 Score=85.91 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=37.6
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV--SQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~--~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+.+|++++|.|+||+|||||+..+++.... |.+..|.+++++..
T Consensus 28 l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 28 LKNV-SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED 80 (258)
T ss_pred eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE
Confidence 4443 447899999999999999999999999987531 01245667776653
No 337
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=6.1e-08 Score=82.39 Aligned_cols=48 Identities=25% Similarity=0.375 Sum_probs=37.0
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----CeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH-----KGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~-----~gvlyi~~e~ 101 (279)
|+.+ +--+.+|++++|.|+||+|||||+..+++... +. .|.++++++.
T Consensus 20 l~~~-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~ 72 (251)
T PRK14249 20 LKNI-NMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNEN 72 (251)
T ss_pred ecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEE
Confidence 4433 34688999999999999999999999998763 32 4667776654
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.63 E-value=1.6e-07 Score=88.77 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=37.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+--+++|+.++|+|++|||||||+..+++.+. +..|.+++++.+
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~ 386 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKP 386 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEE
Confidence 34789999999999999999999999998874 677777777664
No 339
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.63 E-value=7.6e-08 Score=80.46 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=39.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||+|+|||||+..+++... +..|.++++++.
T Consensus 29 ~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~ 77 (226)
T cd03248 29 VLQDV-SFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKP 77 (226)
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCc
Confidence 45544 44789999999999999999999999998763 556677777764
No 340
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=3.3e-08 Score=84.43 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=36.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
+--+++|++++|.|+||+|||||+..+++.... |. +..|.++++++.
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE
Confidence 346899999999999999999999999987631 11 135677777764
No 341
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.63 E-value=8.9e-07 Score=69.49 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=80.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC-----CHHHHHHHHHhCCCCCcc--ccCcEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF-----PTARLAQLCELSPLAKPK--CSDKIF 127 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~-----~~~~~~~~~~~~~~~~~~--~~~~i~ 127 (279)
.|-...|+++-++||+|||||||+-.+++.. +..|.+-+++.... ...|-+.++.++..-... +...+.
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 5678899999999999999999999999877 56667777766431 223344444443222111 333333
Q ss_pred EEecC-CHHHHHHHHHhhhcc-------------------------------CCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 128 ITHCY-EFIDLKRTLESQSGF-------------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 128 ~~~~~-~~~~l~~~i~~~~~~-------------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
+..+. +.......+...+.+ ..+.-+++++|+.....
T Consensus 95 L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L----------- 163 (248)
T COG4138 95 LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL----------- 163 (248)
T ss_pred hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch-----------
Confidence 33222 222222222222211 12345667777765432
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
...+-..+-+.|.++|. .|.+||+.+|.-.
T Consensus 164 DvAQ~~aLdrll~~~c~-~G~~vims~HDLN 193 (248)
T COG4138 164 DVAQQSALDRLLSALCQ-QGLAIVMSSHDLN 193 (248)
T ss_pred hHHHHHHHHHHHHHHHh-CCcEEEEeccchh
Confidence 22344556677788886 6999999988753
No 342
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=3e-08 Score=84.34 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc-ccC-CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ-VSQ-PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~-~~~-~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||++.+++... .|. +..|.++++++.
T Consensus 21 il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 74 (253)
T PRK14242 21 ALHDI-SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74 (253)
T ss_pred eecce-eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE
Confidence 34443 44689999999999999999999999998752 111 356777777653
No 343
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.62 E-value=1.9e-08 Score=92.56 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=37.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|+.+ .-.+.+|++++|.|++|+|||||+..+++... +..|.+++++
T Consensus 39 IL~nV-SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G 85 (549)
T PRK13545 39 ALNNI-SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKG 85 (549)
T ss_pred EEeee-EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECC
Confidence 34544 45789999999999999999999999998763 5566666654
No 344
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.62 E-value=2.5e-08 Score=84.33 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=36.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.||||||||||++.+++.... .+..|.+++++..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~G~i~~~g~~ 65 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSY-EVTSGTILFKGQD 65 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCcceEEECCEe
Confidence 447899999999999999999999999987411 2455667777653
No 345
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.62 E-value=4.2e-08 Score=83.31 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=36.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ--PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||||||||++.+++....++ +..|.++++++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14240 23 NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD 71 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 34688999999999999999999999998653111 145777787764
No 346
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=2.9e-08 Score=84.11 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=36.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|+|+||+|||||+..+++....+.+..|.++++++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~ 68 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe
Confidence 34688999999999999999999999998652112456677777764
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.61 E-value=5.9e-08 Score=100.43 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=90.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc----------------------------------------
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS---------------------------------------- 88 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~---------------------------------------- 88 (279)
.|+.+ .--+++|+.++|+|++||||||++..+++.+...
T Consensus 1183 vL~~l-sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265 1183 IYKDL-TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred cccCe-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 34443 4479999999999999999999999999988510
Q ss_pred -----------CCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEEec-CCHHHHHHHHHhhhccCCC
Q psy2198 89 -----------QPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFITHC-YEFIDLKRTLESQSGFIEN 150 (279)
Q Consensus 89 -----------~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~~~-~~~~~l~~~i~~~~~~~~~ 150 (279)
.+..|.+++++.+. .+.+.+++.+. +...+... +.+|+.+..+ .+.+++.+.++..- ..
T Consensus 1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~-l~-- 1338 (1466)
T PTZ00265 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA-ID-- 1338 (1466)
T ss_pred cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcC-CH--
Confidence 01466888888754 33333333322 11111111 5677777643 45666666655431 00
Q ss_pred CeeEEEEeCcchhhccccc--cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 151 KVGMIVIDSIAGIFRNTYA--EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+ +|.++..-+..... +...+..++|.-.++|+|- .+..|++.+++++..+.
T Consensus 1339 --~--fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl-----r~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1339 --E--FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL-----REPKILLLDEATSSLDS 1391 (1466)
T ss_pred --H--HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEEeCcccccCH
Confidence 0 23333222222111 1122336777788888888 68999999999998875
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.61 E-value=7.6e-08 Score=84.54 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=106.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC--CeEEEEECCCC--CCHHHHHHHHHhCCCCCcc----------
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH--KGVLYICTESV--FPTARLAQLCELSPLAKPK---------- 121 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~--~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~---------- 121 (279)
--+.+|+.++++|++|||||..++.++..+..+... .|.+.+++++. ++...+..+..+..++-.+
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~ 110 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLH 110 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHh
Confidence 357899999999999999999999999887532211 23666677765 3555555554443332211
Q ss_pred -----ccCcEEEEecCCHHHHHHHHHhhhc---c---------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 122 -----CSDKIFITHCYEFIDLKRTLESQSG---F---------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 -----~~~~i~~~~~~~~~~l~~~i~~~~~---~---------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+.+.+.+.+..+-.+..+.+.+++. + ...+|+++|-|+.+.-.+.
T Consensus 111 tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDV 190 (534)
T COG4172 111 TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDV 190 (534)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhh
Confidence 0000001111111111111111110 0 1258999999999875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccc
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
....++...|+++.++.|.++++++|.-.-... +...++.-|.+++.....++|-.+.+..
T Consensus 191 -----------tvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpY 253 (534)
T COG4172 191 -----------TVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPY 253 (534)
T ss_pred -----------hhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChH
Confidence 234668899999999999999999998655443 5677777788888777777766655544
No 349
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.60 E-value=6.6e-08 Score=90.35 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=36.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.||||||||||++.+++... +..|.++++++.
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~ 316 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKP 316 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEE
Confidence 34689999999999999999999999998763 566777777653
No 350
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=3e-08 Score=84.41 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=38.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ---PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~---~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++... |. +..|.++++++.
T Consensus 19 ~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~~~~G~i~~~g~~ 72 (253)
T PRK14267 19 VIKGV-DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE-LNEEARVEGEVRLFGRN 72 (253)
T ss_pred eeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-cccCCCCceEEEECCEE
Confidence 34444 45789999999999999999999999998763 10 136777777764
No 351
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.60 E-value=1.1e-07 Score=89.82 Aligned_cols=44 Identities=30% Similarity=0.524 Sum_probs=37.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
--+++|+.++|+||+|+|||||+..+++.+. +..|.+++++.+.
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i 406 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAV 406 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEC
Confidence 3689999999999999999999999998874 6777888887643
No 352
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.60 E-value=5.2e-07 Score=84.75 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.+++++++|+.++..+. .....+.+.|++++++.+.+||+++|......
T Consensus 185 ~~p~lllLDEPt~~LD~-----------~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 185 KEPFLFLADEPTGTLDP-----------QTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred cCCCEEEeeCCcccCCH-----------HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 58999999999885432 23456778888888778999999999987654
No 353
>PTZ00243 ABC transporter; Provisional
Probab=98.60 E-value=6.4e-08 Score=100.86 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=40.7
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
|+.+ +--+++|+.++|+|++|||||||+..+.+.+- +..|.+++|+.+.
T Consensus 1326 L~~v-sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1326 LRGV-SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREI 1374 (1560)
T ss_pred eecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEc
Confidence 4443 34689999999999999999999999998884 6778889988754
No 354
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3.4e-08 Score=83.94 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=36.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
.--+.+|++++|+|+||+|||||+..+++...- |. +..|.+++++..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~ 72 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE
Confidence 346899999999999999999999999987620 10 246667777654
No 355
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=7.3e-08 Score=83.08 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=35.8
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ---PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~---~~~gvlyi~~e~ 101 (279)
.--+++|++++|+|+||+|||||+..+++... |. +..|-++++++.
T Consensus 41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 41 SMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRS 89 (276)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEE
Confidence 44789999999999999999999999998763 10 245667776653
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.59 E-value=7.2e-08 Score=100.51 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=87.8
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFIT 129 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~ 129 (279)
--+++|+.++|+|++|||||||+..+.+.+- +..|.+++|+.+. .+...+++.+. +...+... +.+|+...
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~ 1383 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF 1383 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc
Confidence 3789999999999999999999999998874 6778899998754 23333333221 11111111 34454322
Q ss_pred ecCCHHHHHHHHHhhh-----c-----c------------------------CCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 130 HCYEFIDLKRTLESQS-----G-----F------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 130 ~~~~~~~l~~~i~~~~-----~-----~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
...+.+++.+.++..- . + .-.+++++++|+.++-.+.+
T Consensus 1384 ~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~-------- 1455 (1522)
T TIGR00957 1384 SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLE-------- 1455 (1522)
T ss_pred cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH--------
Confidence 2344455544443210 0 0 00467888888887744321
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhh
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERA 225 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~ 225 (279)
.. ..+.+.|++.. .++|+|+++|--+.... +.......|.+.+..
T Consensus 1456 Te---~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1456 TD---NLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred HH---HHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 11 23344444432 47888888887666544 333344444444433
No 357
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3.8e-08 Score=94.18 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=38.0
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
+.|+.+ +--+.+|++++|+|+||||||||++.+++... +..|.+++++
T Consensus 30 ~~l~~i-s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g 77 (623)
T PRK10261 30 AAVRNL-SFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDK 77 (623)
T ss_pred eEEEee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECC
Confidence 355555 55789999999999999999999999998873 5566666544
No 358
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=4.3e-08 Score=83.35 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=37.7
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|+|+||||||||+..+++.... |. +..|.+++++..
T Consensus 20 l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 72 (252)
T PRK14256 20 VKDV-SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD 72 (252)
T ss_pred Eecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE
Confidence 4443 346899999999999999999999999987521 11 135667777654
No 359
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1e-06 Score=70.42 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=36.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|.++ +-++.+|+++++.||||||||||++.+++... +..|.+-+++
T Consensus 20 ~le~v-sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~ 66 (259)
T COG4525 20 ALEDV-SLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNG 66 (259)
T ss_pred hhhcc-ceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECC
Confidence 44444 45899999999999999999999999998875 5545444433
No 360
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.58 E-value=6.7e-08 Score=90.28 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=36.7
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.--+++|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 272 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~ 315 (501)
T PRK10762 272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHE 315 (501)
T ss_pred eEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEE
Confidence 34789999999999999999999999998763 566777777643
No 361
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=4.5e-08 Score=86.33 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=36.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTESV 102 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~~ 102 (279)
.--+++|++++|+|++|||||||+..+++..... .+..|.+++++...
T Consensus 102 s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 3479999999999999999999999999876310 12456777777653
No 362
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=3.9e-08 Score=83.58 Aligned_cols=51 Identities=25% Similarity=0.230 Sum_probs=37.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e 100 (279)
.|+.+ .--+.+|++++|.|+||||||||+..+++.... |. +..|.+++++.
T Consensus 20 ~l~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 20 ILFDI-NLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 34433 446889999999999999999999999987631 11 24566677664
No 363
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.58 E-value=1.4e-07 Score=80.41 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=38.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|++|+|||||++.+++... +..|.+++++..
T Consensus 36 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~ 84 (257)
T cd03288 36 VLKHV-KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGID 84 (257)
T ss_pred ceeEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEE
Confidence 34443 44689999999999999999999999998763 566677776653
No 364
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.57 E-value=2.6e-07 Score=82.39 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=88.5
Q ss_pred eccCChhhhhhhC--------CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe----------EEEEECCCCCC
Q psy2198 43 VSTGSEKFDSILK--------GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----------VLYICTESVFP 104 (279)
Q Consensus 43 i~tg~~~LD~~L~--------gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g----------vlyi~~e~~~~ 104 (279)
.--.++.+.+-++ |.+..|+++.+.||||.|||||+..+|+.+. +..| --|+..+...+
T Consensus 341 ~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~~~~~~vSyKPQyI~~~~~gt 417 (591)
T COG1245 341 TLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGSEEDLKVSYKPQYISPDYDGT 417 (591)
T ss_pred eeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCCCccceEeecceeecCCCCCc
Confidence 3445556655443 7899999999999999999999999998874 3332 23444442222
Q ss_pred HHHHHHHHHhCCC--CCcc-----ccCcEEEE-------ecCCHHHHHHH-HHhhhccCCCCeeEEEEeCcchhhccccc
Q psy2198 105 TARLAQLCELSPL--AKPK-----CSDKIFIT-------HCYEFIDLKRT-LESQSGFIENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 105 ~~~~~~~~~~~~~--~~~~-----~~~~i~~~-------~~~~~~~l~~~-i~~~~~~~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+.+++..... +... +.+.+.+. ...+-.++... +... ...+.++-++|+.++..+.
T Consensus 418 ---V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~---L~reADlYllDEPSA~LDv--- 488 (591)
T COG1245 418 ---VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAA---LSREADLYLLDEPSAYLDV--- 488 (591)
T ss_pred ---HHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHH---hccccCEEEecCchhhccH---
Confidence 2222221111 1111 11111111 11222233221 1111 2357799999999986543
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.+.....+.+++++.+.+.+.+++.|.---.+.
T Consensus 489 --------EqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 489 --------EQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred --------HHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 344567889999999999999999998665543
No 365
>KOG0734|consensus
Probab=98.57 E-value=1.9e-07 Score=84.53 Aligned_cols=122 Identities=18% Similarity=0.250 Sum_probs=75.9
Q ss_pred hhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC-CCHHHHHHHHHhCCCCCccccCcEEEEec
Q psy2198 53 ILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV-FPTARLAQLCELSPLAKPKCSDKIFITHC 131 (279)
Q Consensus 53 ~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 131 (279)
.|||-+|+| ++++||||+|||.||+.+++.+. |=||....+ | . .+++ .
T Consensus 331 rLGGKLPKG--VLLvGPPGTGKTlLARAvAGEA~-------VPFF~~sGSEF-----d---------------Em~V--G 379 (752)
T KOG0734|consen 331 RLGGKLPKG--VLLVGPPGTGKTLLARAVAGEAG-------VPFFYASGSEF-----D---------------EMFV--G 379 (752)
T ss_pred hccCcCCCc--eEEeCCCCCchhHHHHHhhcccC-------CCeEeccccch-----h---------------hhhh--c
Confidence 348889999 99999999999999999987764 445444432 1 1 1111 1
Q ss_pred CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 132 YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 132 ~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+..++... ....|++++||++.++-...... +.....+.+.+++-.+.-|.+..|+.||..+.-....+
T Consensus 380 vGArRVRdLF~aA---k~~APcIIFIDEiDavG~kR~~~-~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 380 VGARRVRDLFAAA---KARAPCIIFIDEIDAVGGKRNPS-DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred ccHHHHHHHHHHH---HhcCCeEEEEechhhhcccCCcc-HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 1223344444443 33578999999999875433222 22234556677777777777666666666655444444
No 366
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=6.3e-08 Score=82.22 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=38.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|+|+||||||||+..+++..... .+..|.+++++..
T Consensus 18 ~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14247 18 VLDGV-NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD 71 (250)
T ss_pred eeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE
Confidence 34443 4468999999999999999999999999876310 0246677777653
No 367
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.57 E-value=1e-07 Score=89.45 Aligned_cols=46 Identities=28% Similarity=0.445 Sum_probs=37.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~ 98 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++
T Consensus 299 il~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~ 344 (520)
T TIGR03269 299 AVDNV-SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVR 344 (520)
T ss_pred EEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEe
Confidence 45544 44789999999999999999999999998763 566777775
No 368
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=1.7e-07 Score=80.14 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=38.1
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ--PHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.|+||+|||||+..+++...... +..|.++++++.
T Consensus 24 l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~ 76 (261)
T PRK14263 24 VRDS-HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQD 76 (261)
T ss_pred Eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEe
Confidence 4443 44789999999999999999999999988763100 145677777764
No 369
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.57 E-value=3.8e-07 Score=77.29 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=38.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||++.+++.... ++..|.++++++.
T Consensus 16 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~G~i~~~g~~ 66 (248)
T PRK09580 16 ILRGL-NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKD 66 (248)
T ss_pred eeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccC-CCCceEEEECCCc
Confidence 34443 457899999999999999999999999987411 2456677787764
No 370
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.56 E-value=5.5e-08 Score=82.67 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP--HKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~--~~gvlyi~~e~ 101 (279)
.--+.+|++++|+|+||+|||||+..+++....++. ..|.++++++.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~ 73 (252)
T PRK14239 25 SLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHN 73 (252)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEE
Confidence 346889999999999999999999999986421121 35667777653
No 371
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=7.2e-08 Score=81.90 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=35.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc-ccC-CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ-VSQ-PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~-~~~-~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||+|||||++.+++... .++ +..|.+++++..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRN 71 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEe
Confidence 34689999999999999999999999998632 222 135677777654
No 372
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.56 E-value=6.5e-07 Score=72.51 Aligned_cols=148 Identities=15% Similarity=0.202 Sum_probs=90.3
Q ss_pred ccCChhhhhhhCC---CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCCC
Q psy2198 44 STGSEKFDSILKG---GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPLA 118 (279)
Q Consensus 44 ~tg~~~LD~~L~g---Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~ 118 (279)
-.|.+.=+.+|.| .++.|+++.|.|.||+|||||+..+++... +.+|.+++++.+. .+......++...+.-
T Consensus 12 ~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~RA~~larVfQd 88 (263)
T COG1101 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAKRANLLARVFQD 88 (263)
T ss_pred cCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHHHhhHHHHHhcc
Confidence 3344444445444 799999999999999999999999999985 7888999988865 2322222222221110
Q ss_pred C-----cc--ccCcEEEE----------ecCC--------------------------------HHHHHHHHHhhhccCC
Q psy2198 119 K-----PK--CSDKIFIT----------HCYE--------------------------------FIDLKRTLESQSGFIE 149 (279)
Q Consensus 119 ~-----~~--~~~~i~~~----------~~~~--------------------------------~~~l~~~i~~~~~~~~ 149 (279)
+ +. +.+|+.+. ...+ ..+....+.. ..
T Consensus 89 p~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MA----tl 164 (263)
T COG1101 89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMA----TL 164 (263)
T ss_pred hhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHH----hc
Confidence 0 00 12222111 0000 0111111111 33
Q ss_pred CCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
..++++++|+-++-.++. .-..+++.=.++.++++.|.++|+|..++.-
T Consensus 165 ~~pkiLLLDEHTAALDPk-----------ta~~vm~lT~kiV~~~klTtlMVTHnm~~Al 213 (263)
T COG1101 165 HPPKILLLDEHTAALDPK-----------TAEFVMELTAKIVEEHKLTTLMVTHNMEDAL 213 (263)
T ss_pred CCCcEEEecchhhcCCcc-----------hHHHHHHHHHHHHHhcCCceEEEeccHHHHH
Confidence 689999999988854322 1234556667777889999999999887653
No 373
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=7.1e-08 Score=82.08 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=37.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.|+||+|||||+..+++.... |. +..|.++++++.
T Consensus 21 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 74 (253)
T PRK14261 21 ALYDI-TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN 74 (253)
T ss_pred eeeee-EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE
Confidence 34443 446899999999999999999999999986521 11 125666776653
No 374
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.56 E-value=1.1e-06 Score=77.15 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=90.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHH-hCCCCCcc----cc--------C
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE-LSPLAKPK----CS--------D 124 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~-~~~~~~~~----~~--------~ 124 (279)
-..|+..+|=|.||+|||+|++.++-.+. ..+.++|+++.-. ..++..+.. ....+... .. .
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~---~~~~v~YISTRVd--~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~ 81 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLK---DHGNVMYISTRVD--QDTVYEMYPWIEESIDPTNVLDATQDPFELPLD 81 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHh---ccCCeEEEEeccC--HHHHHHhhhhhccccChhhhhhhccchhhcccc
Confidence 46799999999999999999999998884 5666999999843 333333222 11112111 00 0
Q ss_pred cEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 125 KIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 125 ~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
..........+.+.+.++++. ...+..++++||..+++..-- ..+..+ ..+..+.+.|-+||++.++-+|++.+.
T Consensus 82 ~~vp~~~l~~ds~~~f~~~i~--~~~k~~iI~~DSWdaiieyla--~~~~~~-ed~e~l~~dLv~lard~g~~LIlVsEs 156 (484)
T PF07088_consen 82 KDVPFERLDIDSFRDFVDKIN--EAGKKPIIAFDSWDAIIEYLA--EEHDEP-EDIETLTNDLVELARDMGINLILVSES 156 (484)
T ss_pred ccCcccccCHHHHHHHHHHhh--hcccCcEEEEecHHHHHHHhh--hhhcCc-HHHHHHHHHHHHHHhhcCceEEEEEec
Confidence 111112234566666666543 345778899999777654210 011112 235667788888999999999999988
Q ss_pred ccccC
Q psy2198 205 TSAMT 209 (279)
Q Consensus 205 ~~~~~ 209 (279)
.+...
T Consensus 157 a~~~~ 161 (484)
T PF07088_consen 157 AENEP 161 (484)
T ss_pred CCCCc
Confidence 77654
No 375
>PRK04296 thymidine kinase; Provisional
Probab=98.55 E-value=6.6e-07 Score=72.78 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=66.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC--CCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT--ESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLK 138 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~--e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 138 (279)
|.++.++||+|+||||++..++..+. .....++++.. +.... ...+.. ..+.. . ..+ ......++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k~~~d~~~~---~~~i~~-~lg~~--~-~~~---~~~~~~~~~ 69 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFKPAIDDRYG---EGKVVS-RIGLS--R-EAI---PVSSDTDIF 69 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEecccccccc---CCcEec-CCCCc--c-cce---EeCChHHHH
Confidence 78999999999999999999998875 12223676643 21110 011111 11111 0 111 123445555
Q ss_pred HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 139 RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 139 ~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
..+.+ ...++++|+||+++.+ . ..++.++++ .++..+++|+++.....-.
T Consensus 70 ~~~~~----~~~~~dvviIDEaq~l-~-----------~~~v~~l~~----~l~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 70 ELIEE----EGEKIDCVLIDEAQFL-D-----------KEQVVQLAE----VLDDLGIPVICYGLDTDFR 119 (190)
T ss_pred HHHHh----hCCCCCEEEEEccccC-C-----------HHHHHHHHH----HHHHcCCeEEEEecCcccc
Confidence 55544 2357799999999653 1 122333333 3345899999997765543
No 376
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.55 E-value=6e-07 Score=68.18 Aligned_cols=40 Identities=35% Similarity=0.610 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESV 102 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~ 102 (279)
.+..+.|+||+|+||||++..++..+. ..+ +++|++.+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEc
Confidence 367899999999999999999998885 222 5999988865
No 377
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=1e-07 Score=89.13 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=38.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ .--+++|++++|+|+||||||||++.+++... ++..|.+++++.
T Consensus 277 vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~~~G~i~~~g~ 325 (506)
T PRK13549 277 RVDDV-SFSLRRGEILGIAGLVGAGRTELVQCLFGAYP--GRWEGEIFIDGK 325 (506)
T ss_pred cccce-eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC--CCCCcEEEECCE
Confidence 45554 45799999999999999999999999998762 235677777664
No 378
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.54 E-value=6.2e-08 Score=90.54 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=37.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ-PHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-~~~gvlyi~~e 100 (279)
.|+.+ .--+.+|++++|+||||||||||++.+++... + +..|.+++++.
T Consensus 16 il~~i-sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~--~~~~~G~i~~~g~ 65 (500)
T TIGR02633 16 ALDGI-DLEVRPGECVGLCGENGAGKSTLMKILSGVYP--HGTWDGEIYWSGS 65 (500)
T ss_pred eecce-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCE
Confidence 34544 45789999999999999999999999998652 2 24666777665
No 379
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=9.6e-08 Score=81.11 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++.... |. +..|.++++++.
T Consensus 18 ~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~ 71 (250)
T PRK14262 18 AVKNV-TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQD 71 (250)
T ss_pred eEeee-eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE
Confidence 34444 457899999999999999999999999986520 00 245777777754
No 380
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=6.4e-08 Score=83.28 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||+|||||++.+++....+ .+..|.+++++..
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE
Confidence 3478999999999999999999999999875310 0245667776653
No 381
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.2e-07 Score=81.44 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=37.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc-cc-CCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ-VS-QPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~-~~-~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+.+|++++|.|+||+|||||+..+++... .+ .+..|.+++++..
T Consensus 36 il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 36 AVNDI-SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred eeece-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE
Confidence 34433 34689999999999999999999999998652 11 1345667776653
No 382
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.4e-07 Score=81.01 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=38.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV--SQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~--~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||++.+++.... +.+..|.++++++.
T Consensus 28 il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~ 81 (269)
T PRK14259 28 AVKNV-FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD 81 (269)
T ss_pred EEcce-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 34444 447899999999999999999999999987520 00355667776653
No 383
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.54 E-value=6.4e-08 Score=80.23 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=28.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+--+++|++++|.||||||||||++.+++...
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34689999999999999999999999998763
No 384
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.7e-07 Score=87.47 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=38.1
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|+|+||||||||++.+++... +..|.++++++.
T Consensus 264 l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 311 (491)
T PRK10982 264 IRDV-SFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKK 311 (491)
T ss_pred ccee-eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEE
Confidence 4433 34689999999999999999999999998763 566777777643
No 385
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1.2e-07 Score=81.60 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=35.4
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTE 100 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e 100 (279)
.--+.+|++++|+|+||+|||||+..+++.... |. +..|.+++++.
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 346899999999999999999999999987631 10 24566666664
No 386
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.53 E-value=9.4e-07 Score=75.09 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=36.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ .--+.+|++++|+|+||||||||++.+++.... ++..|.+++++.
T Consensus 22 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~-~~~~G~i~~~g~ 71 (252)
T CHL00131 22 ILKGL-NLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY-KILEGDILFKGE 71 (252)
T ss_pred eeecc-eeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC-cCCCceEEECCE
Confidence 34443 447899999999999999999999999886211 244566666554
No 387
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=1.4e-06 Score=74.67 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=80.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCe----EEEEECCCCCCHHHHH-HHHHhCCCCCccccCcEEEEecCCHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYICTESVFPTARLA-QLCELSPLAKPKCSDKIFITHCYEFIDL 137 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g----vlyi~~e~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l 137 (279)
..+|+|+++.|||+++..|+.........++ |+|+......+..++- .++.. .+. .+....+...+
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~-lga--------P~~~~~~~~~~ 133 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA-LGA--------PYRPRDRVAKL 133 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH-hCc--------ccCCCCCHHHH
Confidence 4899999999999999999987642111111 8898887665555544 33332 221 11122344444
Q ss_pred HHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEec
Q psy2198 138 KRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTN 202 (279)
Q Consensus 138 ~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~ 202 (279)
...+..++ ...+++++|||++..+..+. ..+.+++++.||.|+.+.++++|++.
T Consensus 134 ~~~~~~ll--r~~~vrmLIIDE~H~lLaGs---------~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 134 EQQVLRLL--RRLGVRMLIIDEFHNLLAGS---------YRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred HHHHHHHH--HHcCCcEEEeechHHHhccc---------HHHHHHHHHHHHHHhhccCCCeEEec
Confidence 44443433 44688999999999875432 24568899999999999999999985
No 388
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1.5e-07 Score=79.86 Aligned_cols=51 Identities=31% Similarity=0.318 Sum_probs=37.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ---PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~---~~~gvlyi~~e~ 101 (279)
.|+.+ +--+.+|++++|.|+||+|||||+..+++... |. +..|.+++++..
T Consensus 18 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~ 71 (249)
T PRK14253 18 ALKSI-NLPIPARQVTALIGPSGCGKSTLLRCLNRMND-LIEGVKITGKLTMDGED 71 (249)
T ss_pred eeecc-eEEecCCCEEEEECCCCCCHHHHHHHHHhhcc-cccCCCCceEEEECCEE
Confidence 34443 44689999999999999999999999998763 10 135667776653
No 389
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=6.3e-08 Score=82.30 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=37.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC---CCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP---HKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~---~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||+|||||++.+++... |.+ ..|.++++++.
T Consensus 19 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 19 AVKNV-NLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-LTPGARVTGRILLDGQD 72 (252)
T ss_pred eeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceeEEECCEE
Confidence 34443 44689999999999999999999999998763 111 24667776653
No 390
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.53 E-value=1.9e-07 Score=89.27 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=40.7
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+.|+.+ .+-+++|++++|.||+|+|||||+..+++.........|.+++++..
T Consensus 39 ~iL~~v-s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~ 91 (617)
T TIGR00955 39 HLLKNV-SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP 91 (617)
T ss_pred ccccCC-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE
Confidence 356666 78899999999999999999999999998763100124677777764
No 391
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=9.5e-08 Score=82.00 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=38.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||+..+++....+ .+..|.+++++..
T Consensus 35 il~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 88 (267)
T PRK14237 35 AIKGI-DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID 88 (267)
T ss_pred eEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE
Confidence 34443 4578999999999999999999999999876310 1356667777653
No 392
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.51 E-value=5e-08 Score=91.73 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=38.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++.. | ..|.+++++..
T Consensus 301 il~~i-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~--~~G~i~~~g~~ 348 (529)
T PRK15134 301 VVKNI-SFTLRPGETLGLVGESGSGKSTTGLALLRLI--N--SQGEIWFDGQP 348 (529)
T ss_pred eeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C--CCcEEEECCEE
Confidence 45554 5579999999999999999999999999875 2 45677777653
No 393
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=7.7e-07 Score=83.79 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=35.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~ 98 (279)
.|+.+ +--+.+|++++|+||||||||||++.+++... +..|.++++
T Consensus 16 il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~ 61 (530)
T PRK15064 16 LFENI-SVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLD 61 (530)
T ss_pred eEeCC-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEec
Confidence 45544 45789999999999999999999999998763 445544444
No 394
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.7e-07 Score=80.70 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ--PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--~~~gvlyi~~e~ 101 (279)
.--+.+|++++|+|+||+|||||+..+++....++ +..|.++++++.
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 88 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN 88 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEe
Confidence 34689999999999999999999999998753111 135667777754
No 395
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.51 E-value=1.2e-06 Score=69.35 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=91.2
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC------CCHHHHHHHHHh-CCCCCcc-----c-
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV------FPTARLAQLCEL-SPLAKPK-----C- 122 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~------~~~~~~~~~~~~-~~~~~~~-----~- 122 (279)
--+..|+..+|.|.+|||||||+..+++.+. +.+|-+.++++.. +..++++-+++. ..++.+. +
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL 110 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL 110 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh
Confidence 4678999999999999999999999999884 6777666666543 111121111110 0011111 0
Q ss_pred cCcEEEEecCCH--------------------------------HHHHHHHHhhhccCCCCeeEEEEeCcchhhcccccc
Q psy2198 123 SDKIFITHCYEF--------------------------------IDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 123 ~~~i~~~~~~~~--------------------------------~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
...+......+. .+-..+.+.++ -.|+++|.|+--...
T Consensus 111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI----L~P~iIIaDeAl~~L------ 180 (267)
T COG4167 111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI----LRPKIIIADEALASL------ 180 (267)
T ss_pred cchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh----cCCcEEEehhhhhhc------
Confidence 000111111111 11111222221 367888888743321
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccc
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
......++.+.+-++.++.|++.|.++|.---..- +...++.-|..+++.....++-.+..
T Consensus 181 -----D~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~ 243 (267)
T COG4167 181 -----DMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLH 243 (267)
T ss_pred -----cHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCcc
Confidence 12344567788888888999999999886544432 34555555666666655555544433
No 396
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.51 E-value=8e-07 Score=68.01 Aligned_cols=47 Identities=32% Similarity=0.421 Sum_probs=37.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
-.+.+|+++.|.||+|||||||+-.+.+.+.-...-.|-+|++....
T Consensus 23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred EEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 46889999999999999999999988888763334456788876643
No 397
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1e-07 Score=81.33 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=38.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ--PHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|.|+||||||||+..+++....++ +..|.+++++..
T Consensus 19 ~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~ 72 (258)
T PRK14241 19 AVEDV-NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED 72 (258)
T ss_pred eeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe
Confidence 44444 44789999999999999999999999999763101 146777777653
No 398
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.51 E-value=4.4e-07 Score=95.56 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=84.1
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH-HHHHHHHH---hCCCCCcc--
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT-ARLAQLCE---LSPLAKPK-- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~-~~~~~~~~---~~~~~~~~-- 121 (279)
..|+.+ .-.+++|++++|.|+||+|||||++.+++... +..|.+++.+...... ....+.+. +...+...
T Consensus 1953 ~aL~~I-Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LT 2028 (2272)
T TIGR01257 1953 PAVDRL-CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028 (2272)
T ss_pred eEEEee-EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCC
Confidence 355555 55899999999999999999999999999884 6677888877653211 11111111 11111110
Q ss_pred ccCcEEEE---ecCCHHHHHHHHHhh---hcc------------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 122 CSDKIFIT---HCYEFIDLKRTLESQ---SGF------------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 122 ~~~~i~~~---~~~~~~~l~~~i~~~---~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
+.+++.+. ...+..+..+.+.+. ..+ .-.+++++++|+.++-.+.
T Consensus 2029 v~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp----- 2103 (2272)
T TIGR01257 2029 GREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDP----- 2103 (2272)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH-----
Confidence 11111110 001111111111110 100 1168999999999985432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
...+.+.+.|++++++ |.+||+++|.....+.
T Consensus 2104 ------~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~ 2135 (2272)
T TIGR01257 2104 ------QARRMLWNTIVSIIRE-GRAVVLTSHSMEECEA 2135 (2272)
T ss_pred ------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH
Confidence 1234566666666654 8999999999877653
No 399
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=2e-07 Score=79.87 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=37.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cC-CCCeEEEEECCC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQ-PHKGVLYICTES 101 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~-~~~gvlyi~~e~ 101 (279)
|+.+ .--+++|++++|.|+||+|||||++.+++.... |. +..|.++++++.
T Consensus 26 l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 26 VKNV-WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred eecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE
Confidence 4433 447899999999999999999999999986531 11 245677777653
No 400
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.50 E-value=1.8e-07 Score=97.42 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=91.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEEEe
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFITH 130 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~~~ 130 (279)
-+++|+.++|+|++|||||||+..+++... ..|.+++|+.+. .+...+++.+. +...+... +.+|+....
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~ 1316 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE 1316 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc
Confidence 689999999999999999999999999862 467889988754 23333322211 11111111 334443322
Q ss_pred cCCHHHHHHHHHhhh--------c--c------------------------CCCCeeEEEEeCcchhhccccccchhhHH
Q psy2198 131 CYEFIDLKRTLESQS--------G--F------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQR 176 (279)
Q Consensus 131 ~~~~~~l~~~i~~~~--------~--~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~~ 176 (279)
..+.+++.+.+...- + + .-.+++++++|+.++-.+..
T Consensus 1317 ~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~--------- 1387 (1490)
T TIGR01271 1317 QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV--------- 1387 (1490)
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHH---------
Confidence 333344443333210 0 0 11478999999998754321
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhhe
Q psy2198 177 AHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRD 230 (279)
Q Consensus 177 ~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~rl 230 (279)
.-..+.+.|++.. .++|||+++|-...... +.......|.+.+......+
T Consensus 1388 --Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1388 --TLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKL 1438 (1490)
T ss_pred --HHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 1233455555443 58999999997665544 44455555666554444333
No 401
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.3e-07 Score=80.75 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=35.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCeEEEEECC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP--HKGVLYICTE 100 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~--~~gvlyi~~e 100 (279)
.--+.+|++++|.|+||+|||||++.+++......+ ..|.+++++.
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 346899999999999999999999999987631001 2566777665
No 402
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.7e-07 Score=81.23 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=36.0
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~ 101 (279)
.--+.+|++++|.|+||+|||||++.+++....+ .+..|.++++++.
T Consensus 59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~ 107 (285)
T PRK14254 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN 107 (285)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE
Confidence 3468999999999999999999999999876310 1356667776653
No 403
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.48 E-value=1.2e-06 Score=84.19 Aligned_cols=45 Identities=29% Similarity=0.390 Sum_probs=37.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.--+.+|++++|.|+||+|||||++.+++... +..|.++++++..
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i 72 (648)
T PRK10535 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEc
Confidence 34689999999999999999999999998873 5667777777653
No 404
>PRK13409 putative ATPase RIL; Provisional
Probab=98.48 E-value=2.3e-07 Score=88.02 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=34.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEE
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLY 96 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvly 96 (279)
.|+.+ . -+++|++++|+||||+|||||++.+++... ++.|.++
T Consensus 89 ~L~~l-~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~ 131 (590)
T PRK13409 89 KLYGL-P-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYE 131 (590)
T ss_pred eEecC-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcccc
Confidence 45555 3 578999999999999999999999999763 5556553
No 405
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.47 E-value=1.1e-06 Score=81.88 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=36.7
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
|+.+ +--+++|++++|.||||||||||++.+++.. |+...|.++++++
T Consensus 276 l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~--~~~~~G~i~~~g~ 323 (490)
T PRK10938 276 LHNL-SWQVNPGEHWQIVGPNGAGKSTLLSLITGDH--PQGYSNDLTLFGR 323 (490)
T ss_pred Eeec-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CcccCCeEEEecc
Confidence 4443 4478999999999999999999999999853 2223566777765
No 406
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.47 E-value=3.6e-07 Score=94.77 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|+.+ .--+++|+.++|+||+|||||||+..+++.+. +..|.+++++
T Consensus 400 vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~ 446 (1466)
T PTZ00265 400 IYKDL-NFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIIND 446 (1466)
T ss_pred eeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeC
Confidence 34443 44789999999999999999999999999884 6777788854
No 407
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=9.4e-07 Score=72.27 Aligned_cols=148 Identities=19% Similarity=0.099 Sum_probs=90.4
Q ss_pred cCCcE-EEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCH
Q psy2198 59 HAGGI-TELSGASGCGKTQLCLQMCLSLQVSQ---PHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEF 134 (279)
Q Consensus 59 ~~G~l-~~I~G~~GsGKTtl~~~l~~~~~~~~---~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (279)
..|.+ +.|.|||++||||+++.++....... ....|..+|.....- ......-+...+.+.+++ ..|...
T Consensus 134 ~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVl-----d~cpk~ 207 (308)
T COG3854 134 QNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVL-----DPCPKA 207 (308)
T ss_pred hcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhc-----ccchHH
Confidence 45667 89999999999999999999886221 112266666654310 000111011111222222 236667
Q ss_pred HHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCc
Q psy2198 135 IDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKN 214 (279)
Q Consensus 135 ~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~ 214 (279)
+.+...++.. .|.++|+|+++.. .....+..++. .|+-++.+.|...-.+ -..
T Consensus 208 ~gmmmaIrsm------~PEViIvDEIGt~--------------~d~~A~~ta~~-----~GVkli~TaHG~~ied--l~k 260 (308)
T COG3854 208 EGMMMAIRSM------SPEVIIVDEIGTE--------------EDALAILTALH-----AGVKLITTAHGNGIED--LIK 260 (308)
T ss_pred HHHHHHHHhc------CCcEEEEeccccH--------------HHHHHHHHHHh-----cCcEEEEeeccccHHH--hhc
Confidence 7777788775 5699999999863 12233334444 7999999999876554 467
Q ss_pred cCccccchhh-hhhhheeeecccccc
Q psy2198 215 IPALGLTYER-AHDMRDLAHYLHEIS 239 (279)
Q Consensus 215 ~~~~g~~~~~-~~~~rl~l~k~~~~~ 239 (279)
+|.+.+.|+. +.+.-+.+.+.++..
T Consensus 261 rp~lkdlv~i~af~r~~elsrr~g~g 286 (308)
T COG3854 261 RPTLKDLVEIQAFDRGIELSRRRGPG 286 (308)
T ss_pred ChhHHHHHhhhHHHHHHHHhhccCCC
Confidence 7888888874 444444455555543
No 408
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.1e-07 Score=80.77 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP--HKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~--~~gvlyi~~e~ 101 (279)
+--+.+|++++|+|+||+|||||+..+++....++. ..|.+++++..
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 73 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence 446899999999999999999999999986421111 24666776653
No 409
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.4e-06 Score=66.93 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=48.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC-CHH---HHHHHHHhCCCCCcc--ccCcEEE
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF-PTA---RLAQLCELSPLAKPK--CSDKIFI 128 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~-~~~---~~~~~~~~~~~~~~~--~~~~i~~ 128 (279)
-+.+|+.+.|.||||+|||||++.+++... +..|-+|+.++..- ..+ +...++..+.++..+ +.+|+.|
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F 98 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF 98 (209)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHH
Confidence 578999999999999999999999999885 77777777766542 222 233445555555554 4455543
No 410
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.46 E-value=2.1e-07 Score=87.19 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=37.4
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
|+.+ .--+++|++++|.|+||||||||++.+++... +..|.+++++.
T Consensus 279 l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~ 325 (510)
T PRK15439 279 FRNI-SLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGK 325 (510)
T ss_pred ccce-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCE
Confidence 4443 44789999999999999999999999998763 55667777664
No 411
>KOG0744|consensus
Probab=98.46 E-value=5.5e-07 Score=76.98 Aligned_cols=133 Identities=15% Similarity=0.255 Sum_probs=88.9
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC---e-EEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK---G-VLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCY 132 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~---g-vlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 132 (279)
-+.-++++.+.||||+|||+||..+|-.+.....+. + .+-+..... ..+.+.+ ...
T Consensus 173 lIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL-----FSKWFsE---------------SgK 232 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL-----FSKWFSE---------------SGK 232 (423)
T ss_pred eeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH-----HHHHHhh---------------hhh
Confidence 456689999999999999999999998775432111 0 222222211 1111111 122
Q ss_pred CHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc---cccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 133 EFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR---NTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 133 ~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
-...+...++++++ .++..-+|.||++-++.. ...+..+..+..+.+..+..+|.++-+-.|+.++.++......+
T Consensus 233 lV~kmF~kI~ELv~-d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD 311 (423)
T KOG0744|consen 233 LVAKMFQKIQELVE-DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSID 311 (423)
T ss_pred HHHHHHHHHHHHHh-CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHH
Confidence 34455666666654 456667788998877642 33344555667888999999999999999999999999988877
Q ss_pred C
Q psy2198 210 H 210 (279)
Q Consensus 210 ~ 210 (279)
.
T Consensus 312 ~ 312 (423)
T KOG0744|consen 312 V 312 (423)
T ss_pred H
Confidence 5
No 412
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=5.2e-07 Score=78.92 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=38.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS--QPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~--~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+.+|++++|+|++|+|||||+..+++....+ .+..|.+++++..
T Consensus 60 iL~~i-s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 60 ALKGV-SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 34443 3468999999999999999999999999875210 1356677777653
No 413
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.46 E-value=7.2e-07 Score=67.57 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=68.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLES 143 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~ 143 (279)
+.|+||||+|||+++..++.... ..++++++.... .. ........+...+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~---------~~--------------~~~~~~~~i~~~~~~ 52 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELI---------SS--------------YAGDSEQKIRDFFKK 52 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHH---------TS--------------STTHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccc---------cc--------------ccccccccccccccc
Confidence 57999999999999999998863 236777776421 00 001112333344444
Q ss_pred hhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHH-cCcEEEEecccccccC
Q psy2198 144 QSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIK-HRIVVICTNQVTSAMT 209 (279)
Q Consensus 144 ~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~-~~~~vi~v~h~~~~~~ 209 (279)
... ...+.+++||.+..+.... ..............+...+...... .++.+|++++......
T Consensus 53 ~~~--~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~ 116 (132)
T PF00004_consen 53 AKK--SAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID 116 (132)
T ss_dssp HHH--TSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred ccc--cccceeeeeccchhccccc-ccccccccccccceeeecccccccccccceeEEeeCChhhCC
Confidence 321 1147999999999987654 2111122344456666666665544 4578888776644443
No 414
>PLN03211 ABC transporter G-25; Provisional
Probab=98.45 E-value=1.3e-07 Score=90.84 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=39.9
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
..|+.+ .+-+++|++++|.||||+|||||+..+++... |....|.++++++.
T Consensus 82 ~iL~~v-s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-~~~~sG~I~inG~~ 133 (659)
T PLN03211 82 TILNGV-TGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-GNNFTGTILANNRK 133 (659)
T ss_pred eeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEEEECCEE
Confidence 355555 67899999999999999999999999998763 11125667777654
No 415
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.45 E-value=2.9e-07 Score=86.02 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+.+|++++|.|+||||||||++.+++... ++..|.++++++.
T Consensus 275 ~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~~G~i~~~g~~ 324 (500)
T TIGR02633 275 RVDDV-SFSLRRGEILGVAGLVGAGRTELVQALFGAYP--GKFEGNVFINGKP 324 (500)
T ss_pred ccccc-eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC--CCCCeEEEECCEE
Confidence 45444 44789999999999999999999999998762 2346777776653
No 416
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.3e-07 Score=79.15 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=30.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|+.+ .--+.+|++++|.|+||+|||||+..+++...
T Consensus 25 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 25 ILKDI-TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred eEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34443 44688999999999999999999999998763
No 417
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=1.1e-06 Score=78.11 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=79.7
Q ss_pred hhHhhcCccHHHHHHHHHHHhhccc-ccCCCCCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKAF-QVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
+.+...|++..-++++.+....... ...+....-....+...++.++.. ..-+..|++++|+||+|+||||++..++.
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSE-DALMERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCC-CccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999886543210 011110011122334444444432 23467899999999999999999999998
Q ss_pred HhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcc
Q psy2198 84 SLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIA 161 (279)
Q Consensus 84 ~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~ 161 (279)
.+........+.+++++... ..+.+..+.. .. ++.+....+..++...+.+. .+.++|+||..+
T Consensus 160 ~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~-~~--------gv~~~~~~~~~~l~~~l~~l-----~~~DlVLIDTaG 225 (374)
T PRK14722 160 RCVMRFGASKVALLTTDSYRIGGHEQLRIFGK-IL--------GVPVHAVKDGGDLQLALAEL-----RNKHMVLIDTIG 225 (374)
T ss_pred HHHHhcCCCeEEEEecccccccHHHHHHHHHH-Hc--------CCceEecCCcccHHHHHHHh-----cCCCEEEEcCCC
Confidence 76421111236666655431 1222222222 11 12222233334444444443 245899999887
Q ss_pred hh
Q psy2198 162 GI 163 (279)
Q Consensus 162 ~~ 163 (279)
..
T Consensus 226 ~~ 227 (374)
T PRK14722 226 MS 227 (374)
T ss_pred CC
Confidence 43
No 418
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.44 E-value=2.9e-07 Score=95.19 Aligned_cols=52 Identities=25% Similarity=0.352 Sum_probs=40.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .+-+++|++++|.||||+|||||+..+++......+..|.+++++..
T Consensus 778 iL~~v-s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 778 ILNNV-DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829 (1394)
T ss_pred eeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE
Confidence 45555 57899999999999999999999999998753111345677787764
No 419
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.44 E-value=5.2e-08 Score=85.91 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=35.8
Q ss_pred CCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.+++++++|+...-.+. .....+.+.|+++.++.+.++|+++|.....
T Consensus 117 ~~p~lllLDEP~s~LD~-----------~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~ 164 (325)
T TIGR01187 117 FKPKILLLDEPLSALDK-----------KLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164 (325)
T ss_pred hCCCEEEEeCCCccCCH-----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 57899999998875432 2234567777777777899999999987654
No 420
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.43 E-value=3e-06 Score=77.15 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=90.2
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK 119 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~ 119 (279)
...+.||+..+|.++ -+.+|+.+.|.|++|+|||||+..++.... ...+++.+.++..-. +..+........
T Consensus 139 ~~~l~tg~~vid~l~--~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Gerg~e---v~e~~~~~l~~~ 210 (438)
T PRK07721 139 REPMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGERGRE---VREFIERDLGPE 210 (438)
T ss_pred ccccccchhhhheee--eecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEecCCcc---HHHHHHhhcChh
Confidence 347899999999985 689999999999999999999998887663 455677777776522 222222211110
Q ss_pred ccccCcEEEEecCC---HHHHHH-----HHHhhhccCCCCeeEEEEeCcchhhccccc-----cchh---hHHHHHHHHH
Q psy2198 120 PKCSDKIFITHCYE---FIDLKR-----TLESQSGFIENKVGMIVIDSIAGIFRNTYA-----EDKY---VQRAHDMRDL 183 (279)
Q Consensus 120 ~~~~~~i~~~~~~~---~~~l~~-----~i~~~~~~~~~~~~lvvID~l~~~~~~~~~-----~~~~---~~~~~~~~~l 183 (279)
.....+.+....+ ...+.. .+.+... ..+.--++++|+++.+...... +... .........+
T Consensus 211 -~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr-~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l 288 (438)
T PRK07721 211 -GLKRSIVVVATSDQPALMRIKGAYTATAIAEYFR-DQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL 288 (438)
T ss_pred -hhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH
Confidence 0223344433222 111111 1112111 3344456788999987543211 0100 0112334556
Q ss_pred HHHHHHHHH-HcCc-----EEEEecccccc
Q psy2198 184 AHYLHELSI-KHRI-----VVICTNQVTSA 207 (279)
Q Consensus 184 ~~~L~~la~-~~~~-----~vi~v~h~~~~ 207 (279)
.+.+.++.. +.|. ||++.+|...+
T Consensus 289 ~~ller~~~~~~GsIT~~~TVlv~~hdm~e 318 (438)
T PRK07721 289 PKLLERTGTNASGSITAFYTVLVDGDDMNE 318 (438)
T ss_pred HHHHHHhcCCCCCCeeeEEEEEEECCCCCc
Confidence 666666654 3564 88888877654
No 421
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=7.7e-06 Score=75.43 Aligned_cols=141 Identities=17% Similarity=0.179 Sum_probs=76.5
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcc-cccCCCCCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKA-FQVGKNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
..|...|++..-+.++.+...... ...+... -...+...++..+ ..-+..|+++.|+||+|+||||++..|+.
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~---l~~~L~~~l~v~~---~~~l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGL---MLGLLSKRLPVAP---VDPLERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHH---HHHHHHHhcCcCc---cccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 456778999988888877654321 1011000 0000111111000 12356799999999999999999999998
Q ss_pred HhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 84 SLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 84 ~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
.+........+.+++.... ......++..... .-.+.+....+..++...+.+. .+.++|+||..+..
T Consensus 373 ~la~~~~gkkVaLIdtDty-RigA~EQLk~ya~------iLgv~v~~a~d~~~L~~aL~~l-----~~~DLVLIDTaG~s 440 (559)
T PRK12727 373 RFAAQHAPRDVALVTTDTQ-RVGGREQLHSYGR------QLGIAVHEADSAESLLDLLERL-----RDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHhcCCCceEEEecccc-cccHHHHHHHhhc------ccCceeEecCcHHHHHHHHHHh-----ccCCEEEecCCCcc
Confidence 7652111234777776532 2111122211100 1122333344556666666554 25799999998753
No 422
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=4.7e-07 Score=76.85 Aligned_cols=47 Identities=26% Similarity=0.435 Sum_probs=35.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc-ccC-CCCeEEEEECCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ-VSQ-PHKGVLYICTES 101 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~-~~~-~~~gvlyi~~e~ 101 (279)
.--+++|++++|.|++|+|||||++.+++... .|. +..|.+++++..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 71 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD 71 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE
Confidence 34689999999999999999999999998652 121 245667777654
No 423
>PLN03232 ABC transporter C family member; Provisional
Probab=98.42 E-value=2.4e-07 Score=96.60 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=78.8
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYE 133 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 133 (279)
+--+++|+.++|+|++|||||||+..+++... +..|++..+...- .+..|...+... +.+|+.+..+.+
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~~~~~~I--------ayv~Q~p~Lf~gTIreNI~fg~~~~ 706 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSVVIRGSV--------AYVPQVSWIFNATVRENILFGSDFE 706 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEEEecCcE--------EEEcCccccccccHHHHhhcCCccC
Confidence 34689999999999999999999999998874 2334443322111 111111111111 566777766667
Q ss_pred HHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccc--cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 134 FIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYA--EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 134 ~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.+++.+.++... . ..+ ++.+..-+..... +...+.++++.-.++|++- .+..|++.+++++..+.
T Consensus 707 ~e~~~~vl~~~~-L---~~d---i~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly-----~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 707 SERYWRAIDVTA-L---QHD---LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY-----SNSDIYIFDDPLSALDA 773 (1495)
T ss_pred HHHHHHHHHHhC-C---HHH---HHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh-----cCCCEEEEcCCccccCH
Confidence 666666555431 0 000 1111111111111 1122336777788889888 68899999999998875
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.42 E-value=2.3e-06 Score=70.28 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.+|++++|+||||+|||||+..++...
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 3456999999999999999999999554
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.1e-06 Score=82.47 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=36.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|+.+ +-.+.+|++++|+||||||||||++.+++... +..|.+++.+
T Consensus 16 ~l~~v-s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~ 62 (638)
T PRK10636 16 LLDNA-TATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPG 62 (638)
T ss_pred eecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC
Confidence 34444 44799999999999999999999999998653 5556555443
No 426
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2.1e-06 Score=70.97 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ .=-+.+|+-+.|+||||+|||||+..+++..- +..+.+.+-+.
T Consensus 46 iL~~i-sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~ 93 (257)
T COG1119 46 ILGDL-SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGR 93 (257)
T ss_pred ecccc-ceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeee
Confidence 34433 33689999999999999999999999888763 43454444444
No 427
>PLN03140 ABC transporter G family member; Provisional
Probab=98.40 E-value=2.3e-07 Score=95.97 Aligned_cols=51 Identities=25% Similarity=0.292 Sum_probs=39.4
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---CeEEEEECC
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH---KGVLYICTE 100 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~---~gvlyi~~e 100 (279)
+...|+.+ .|-+++|++++|.||||||||||++.+++... +. .|.+++++.
T Consensus 177 ~~~IL~~v-s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~ 230 (1470)
T PLN03140 177 KLTILKDA-SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGY 230 (1470)
T ss_pred cceeccCC-eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCE
Confidence 34456666 67899999999999999999999999998763 33 455555554
No 428
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.3e-06 Score=74.19 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=79.7
Q ss_pred ccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcccc
Q psy2198 44 STGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCS 123 (279)
Q Consensus 44 ~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~ 123 (279)
|---|+|=.-+ |+.|..=++++||||+|||.||+..|.... +-|+---. .+-+.+++++.
T Consensus 170 PL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-------AtFIrvvg---SElVqKYiGEG-------- 229 (406)
T COG1222 170 PLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQTD-------ATFIRVVG---SELVQKYIGEG-------- 229 (406)
T ss_pred cccCHHHHHHc--CCCCCCceEeeCCCCCcHHHHHHHHHhccC-------ceEEEecc---HHHHHHHhccc--------
Confidence 33334444433 899999999999999999999997775542 33433222 12234443321
Q ss_pred CcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh--HHHHHHHHHHHHHHHHHHHcCcEEEEe
Q psy2198 124 DKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV--QRAHDMRDLAHYLHELSIKHRIVVICT 201 (279)
Q Consensus 124 ~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~la~~~~~~vi~v 201 (279)
..+...+-++. ..+.|.+++||++.++....+.....+ +-++.+-+++..|.-|-...++-||+.
T Consensus 230 -----------aRlVRelF~lA--rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 230 -----------ARLVRELFELA--REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred -----------hHHHHHHHHHH--hhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 11222222222 456889999999999865544433222 234455556666666666778999987
Q ss_pred cccccccCC
Q psy2198 202 NQVTSAMTH 210 (279)
Q Consensus 202 ~h~~~~~~~ 210 (279)
+.=-...+.
T Consensus 297 TNR~D~LDP 305 (406)
T COG1222 297 TNRPDILDP 305 (406)
T ss_pred cCCccccCh
Confidence 755544443
No 429
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.1e-06 Score=80.83 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYI 97 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi 97 (279)
--+.+|++++|.||||||||||++.+++... +..|.+++
T Consensus 340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~ 378 (530)
T PRK15064 340 LLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKW 378 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE
Confidence 4689999999999999999999999998763 44554444
No 430
>PLN03130 ABC transporter C family member; Provisional
Probab=98.39 E-value=3.5e-07 Score=95.67 Aligned_cols=133 Identities=15% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCY 132 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 132 (279)
+--+++|++++|+||+|||||||+..+++... +.. |.+.+...-. +..+...+... +.+|+.+..+.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~~Ia--------yv~Q~p~LfngTIreNI~fg~~~ 705 (1622)
T PLN03130 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRGTVA--------YVPQVSWIFNATVRDNILFGSPF 705 (1622)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcCeEE--------EEcCccccCCCCHHHHHhCCCcc
Confidence 34689999999999999999999999999884 444 5444322111 11111111111 56777777666
Q ss_pred CHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccc--ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 133 EFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY--AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 133 ~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+.+++.+.++... . .. .|+.+..-..... .+...+.++++.-.++|++- .+..|++.+++++..+.
T Consensus 706 d~e~y~~vl~a~~-L-~~-----di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly-----~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 706 DPERYERAIDVTA-L-QH-----DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY-----SNSDVYIFDDPLSALDA 773 (1622)
T ss_pred cHHHHHHHHHHhC-c-HH-----HHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh-----CCCCEEEECCCccccCH
Confidence 6666666554431 0 00 0111111011111 11112336777788899888 68899999999988875
No 431
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=6.3e-06 Score=63.00 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.+..+.|.||+|+|||+++..++..+. .....++|++....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhh
Confidence 577899999999999999999998874 23344888877654
No 432
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.38 E-value=6.4e-06 Score=73.31 Aligned_cols=144 Identities=18% Similarity=0.130 Sum_probs=78.2
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcccccCCCCCCCCCceeccCChhhhhhhCC---CccCCcEEEEEcCCCCcHHHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKG---GIHAGGITELSGASGCGKTQLCLQM 81 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tg~~~LD~~L~g---Gl~~G~l~~I~G~~GsGKTtl~~~l 81 (279)
..+..-|+++.-++++.+.............. ...+..-...+-..+.. ....+.++.|+||+|+||||++..+
T Consensus 185 ~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKL 261 (436)
T PRK11889 185 RMLEQNDVEQYFIHAYAEKLKVKFENATMITE---EEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKM 261 (436)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhhhcccccCCH---HHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHH
Confidence 45678899999889988876543111000000 00000000111111110 0123478999999999999999999
Q ss_pred HHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCc
Q psy2198 82 CLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSI 160 (279)
Q Consensus 82 ~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l 160 (279)
+..+. ..+ .+.++++.. +....+.++..... ..++.+....+..++...+.... ...+.++|+||..
T Consensus 262 A~~L~---~~GkkVglI~aDt-~RiaAvEQLk~yae------~lgipv~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTa 329 (436)
T PRK11889 262 AWQFH---GKKKTVGFITTDH-SRIGTVQQLQDYVK------TIGFEVIAVRDEAAMTRALTYFK--EEARVDYILIDTA 329 (436)
T ss_pred HHHHH---HcCCcEEEEecCC-cchHHHHHHHHHhh------hcCCcEEecCCHHHHHHHHHHHH--hccCCCEEEEeCc
Confidence 98775 233 377777653 33333334332111 11233333456677766665543 1236799999988
Q ss_pred chh
Q psy2198 161 AGI 163 (279)
Q Consensus 161 ~~~ 163 (279)
+..
T Consensus 330 GRs 332 (436)
T PRK11889 330 GKN 332 (436)
T ss_pred ccc
Confidence 764
No 433
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.38 E-value=1.9e-06 Score=91.05 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=40.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.|+.+ .-.+.+|++++|.|+||+|||||+..+++... +..|.+++++.+.
T Consensus 945 aL~~l-sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI 994 (2272)
T TIGR01257 945 AVDRL-NITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDI 994 (2272)
T ss_pred EEEee-EEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEEC
Confidence 44444 44799999999999999999999999999874 6778888877653
No 434
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.38 E-value=2.7e-06 Score=70.39 Aligned_cols=124 Identities=15% Similarity=-0.005 Sum_probs=70.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRT 140 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 140 (279)
...+.|+|+||+||||++..+. +..+.++.+... ..+... . ..+-+.+....+.+.+.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~---------~~~~~~~~d~~~-----~~l~g~---~---~~~v~~~d~~~~~~~~~d~ 71 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP---------GKTLVLSFDMSS-----KVLIGD---E---NVDIADHDDMPPIQAMVEF 71 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC---------CCCEEEeccccc-----hhccCC---C---CCceeecCCCCCHHHHHHH
Confidence 4679999999999999988663 225556555431 111000 0 0111222334456666666
Q ss_pred HHhhhccCCCCeeEEEEeCcchhhcccc--------ccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 141 LESQSGFIENKVGMIVIDSIAGIFRNTY--------AED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 141 i~~~~~~~~~~~~lvvID~l~~~~~~~~--------~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
+.... ....+++.||||+++.+...-+ .+. +...-...-..+.+.|+.|.. .+..||+++|...
T Consensus 72 l~~~~-~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tAhe~~ 144 (220)
T TIGR01618 72 YVMQN-IQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATAWELT 144 (220)
T ss_pred HHHHH-hccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEEeecc
Confidence 65332 2456789999999998754111 000 000011122346666676654 8999999999964
No 435
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.37 E-value=2.4e-06 Score=73.84 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.--+++|++++|+|+||+|||||+..+++..
T Consensus 57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999999998876
No 436
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=8.5e-06 Score=72.24 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=79.9
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcccccCCCC----CCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKAFQVGKNP----IDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQ 80 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~ 80 (279)
+.+..-|+++.-++.+.+...+......... ...-...+..-++..+. ..+.+|+++.|+||+|+||||++..
T Consensus 149 ~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~---~~~~~~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 149 KFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDS---FDLSNHRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCC---ceecCCeEEEEECCCCCCHHHHHHH
Confidence 3467788888888888877655411100000 00000111111111111 1356799999999999999999999
Q ss_pred HHHHhcccCCCCeEEEEECCCCCC--HHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEe
Q psy2198 81 MCLSLQVSQPHKGVLYICTESVFP--TARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVID 158 (279)
Q Consensus 81 l~~~~~~~~~~~gvlyi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID 158 (279)
++..+. .....+.+++...-.. .+.+..... .. .+.+....+..++...+.... ...+.++|+||
T Consensus 226 LA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae-~l--------gvpv~~~~dp~dL~~al~~l~--~~~~~D~VLID 292 (407)
T PRK12726 226 LGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYAD-KL--------DVELIVATSPAELEEAVQYMT--YVNCVDHILID 292 (407)
T ss_pred HHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhh-cC--------CCCEEecCCHHHHHHHHHHHH--hcCCCCEEEEE
Confidence 998764 1223477777763311 223332222 11 222223456777776666543 12467999999
Q ss_pred Ccchh
Q psy2198 159 SIAGI 163 (279)
Q Consensus 159 ~l~~~ 163 (279)
..+..
T Consensus 293 TAGr~ 297 (407)
T PRK12726 293 TVGRN 297 (407)
T ss_pred CCCCC
Confidence 98764
No 437
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=5.8e-07 Score=77.04 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=34.4
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC---CCeEEEEECC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP---HKGVLYICTE 100 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~---~~gvlyi~~e 100 (279)
--+.+|++++|+|+||+|||||+..+++... |.+ ..|.+++++.
T Consensus 37 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~sG~i~~~g~ 83 (265)
T PRK14252 37 MMVHEKQVTALIGPSGCGKSTFLRCFNRMHD-LYPGNHYEGEIILHPD 83 (265)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCCCcccEEEEcCc
Confidence 3689999999999999999999999988753 111 4566677654
No 438
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.35 E-value=3.3e-06 Score=78.65 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=29.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.-.+.+|+-++|+|+||+|||||+..+++...
T Consensus 23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 23 SLTLNPGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred cceeCCCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 34789999999999999999999999998874
No 439
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.34 E-value=4.3e-06 Score=80.36 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=36.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|+.+ +--+.+|++++|+||||||||||++.+++... +..|.+++++
T Consensus 18 il~~i-s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~ 64 (635)
T PRK11147 18 LLDNA-ELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQ 64 (635)
T ss_pred eEeCc-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCC
Confidence 34444 44789999999999999999999999998763 5556555543
No 440
>KOG0054|consensus
Probab=98.34 E-value=1.4e-06 Score=88.18 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=95.3
Q ss_pred hhhhhCC---CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHH---HHHhCCCCCcc
Q psy2198 50 FDSILKG---GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQ---LCELSPLAKPK 121 (279)
Q Consensus 50 LD~~L~g---Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~---~~~~~~~~~~~ 121 (279)
++-+|.| -+++|+-++|+|.+|+|||||++.+.... .+.+|.++||+-+.. .-..+++ ++.|.+-+...
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~---e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG 1228 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV---EPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG 1228 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc---CccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC
Confidence 4445544 69999999999999999999999988877 357889999998752 2222221 11111111000
Q ss_pred -ccCcEEEEecCCHHHHHHHHH--------------------------------------hhhccCCCCeeEEEEeCcch
Q psy2198 122 -CSDKIFITHCYEFIDLKRTLE--------------------------------------SQSGFIENKVGMIVIDSIAG 162 (279)
Q Consensus 122 -~~~~i~~~~~~~~~~l~~~i~--------------------------------------~~~~~~~~~~~lvvID~l~~ 162 (279)
+..|+.-...++-+++.+.+. .++ .+-+++|+|+-++
T Consensus 1229 TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL----r~skILvLDEATA 1304 (1381)
T KOG0054|consen 1229 TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL----RKSKILVLDEATA 1304 (1381)
T ss_pred ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh----ccCCEEEEecccc
Confidence 222222222333344433332 222 4678899999887
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhheee
Q psy2198 163 IFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRDLA 232 (279)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~rl~l 232 (279)
..+..- . ..++ +.+++-- .+||||.+.|=-...-+ +...+..-|.+.+......++-
T Consensus 1305 sVD~~T-------D-~lIQ---~tIR~~F--~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1305 SVDPET-------D-ALIQ---KTIREEF--KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred cCChHH-------H-HHHH---HHHHHHh--cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHh
Confidence 544220 1 1122 2232221 49999999998776543 5666666677777666655543
No 441
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.33 E-value=6.9e-07 Score=86.09 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~ 98 (279)
.--+++|+.++|+||+|||||||++.+++... +.+|.++++
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~ 512 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKP 512 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeec
Confidence 34688999999999999999999999998763 455545443
No 442
>KOG0733|consensus
Probab=98.32 E-value=2.9e-06 Score=78.19 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=72.4
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
-|+.|..-+++.||||||||.||+.+++.+..| |+.-..+ .++.. ....+-+
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp-------eivSG--------------vSGESEk 269 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP-------EIVSG--------------VSGESEK 269 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch-------hhhcc--------------cCcccHH
Confidence 488888889999999999999999999887532 2222111 11111 0122334
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHH--cCcEEEEeccccc
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIK--HRIVVICTNQVTS 206 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~--~~~~vi~v~h~~~ 206 (279)
.+.+.+.+.. ...|.+++||++.++-+...... .....+.+.+++..+..+..+ .|..|++|.-.++
T Consensus 270 kiRelF~~A~---~~aPcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 270 KIRELFDQAK---SNAPCIVFIDEIDAITPKREEAQ-REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred HHHHHHHHHh---ccCCeEEEeecccccccchhhHH-HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 5555565553 35789999999999765432211 111234556666666666543 3566777765444
No 443
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.31 E-value=2.8e-06 Score=88.00 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=39.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~~~~gvlyi~~e~ 101 (279)
.|+.+ .+-+++|++++|.||||||||||++.+++...- ..+..|.+++++..
T Consensus 76 iL~~v-s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~ 128 (1394)
T TIGR00956 76 ILKPM-DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGIT 128 (1394)
T ss_pred eeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEe
Confidence 46665 678999999999999999999999999986520 01345667776653
No 444
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.31 E-value=8e-06 Score=66.82 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.7
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-+.+| +++|+||||+|||||+..++...
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 46778 99999999999999999987664
No 445
>PLN03140 ABC transporter G family member; Provisional
Probab=98.30 E-value=9.8e-07 Score=91.37 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=38.7
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
..|+.+ .+-+++|++++|.||||||||||+..+++... +....|.+++++..
T Consensus 894 ~iL~~v-s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~ 945 (1470)
T PLN03140 894 QLLREV-TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP 945 (1470)
T ss_pred eEeeCc-EEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence 345555 67899999999999999999999999998642 10134566676653
No 446
>KOG0066|consensus
Probab=98.29 E-value=6.9e-06 Score=73.18 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=84.2
Q ss_pred eeccCChhhhhhh---CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe---------EEEEECCCC--C-CHH
Q psy2198 42 VVSTGSEKFDSIL---KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG---------VLYICTESV--F-PTA 106 (279)
Q Consensus 42 ~i~tg~~~LD~~L---~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g---------vlyi~~e~~--~-~~~ 106 (279)
.+.+|++.-+-+| .-|+.--+-++|+||+|.|||||+..+.+.+. +..| +=||+-... + ..+
T Consensus 591 ~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnhrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 591 DVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNHRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred cccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccceeeeechhhhhHHhhcccc
Confidence 4567776554443 45899999999999999999999999998874 3333 334432211 0 000
Q ss_pred HHHHHHHhCCCCCcc----c---------cCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchh
Q psy2198 107 RLAQLCELSPLAKPK----C---------SDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 107 ~~~~~~~~~~~~~~~----~---------~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
....+++..+.+..+ . ...+.+.....-..-...+.++ .-.+|+++|+|+.+.-+.
T Consensus 668 tp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeL---al~~PDvlILDEPTNNLD-------- 736 (807)
T KOG0066|consen 668 TPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAEL---ALGGPDVLILDEPTNNLD-------- 736 (807)
T ss_pred CHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHH---hcCCCCEEEecCCCCCcc--------
Confidence 112222332333222 1 1122222222222222333333 346899999999886432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
...+..+..++. +++-.||+++|..+-+..
T Consensus 737 ---IESIDALaEAIn----ey~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 737 ---IESIDALAEAIN----EYNGGVIMVSHDERLIVE 766 (807)
T ss_pred ---hhhHHHHHHHHH----hccCcEEEEecccceeee
Confidence 223455555555 689999999998776543
No 447
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.29 E-value=1e-06 Score=83.37 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=31.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|+.+ .--+.+|++++|+||||||||||++.+++...
T Consensus 22 il~~v-s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 22 ILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred eeeCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444 44789999999999999999999999998763
No 448
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.28 E-value=3.6e-06 Score=74.44 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC-----CCCeEEEE---------ECC--CCCCHHHHHHHHHhCCCCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ-----PHKGVLYI---------CTE--SVFPTARLAQLCELSPLAK 119 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-----~~~gvlyi---------~~e--~~~~~~~~~~~~~~~~~~~ 119 (279)
--+.+|+++.|+|+||+||||++..+++...--. ++.|.+-+ -++ ..++.. .++.+..+..
T Consensus 404 L~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~---tilehl~s~t 480 (593)
T COG2401 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEV---TILEHLRSKT 480 (593)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCch---hHHHHHhhcc
Confidence 3689999999999999999999999998764110 11222211 111 111111 1111111111
Q ss_pred cc------------ccCcEEEEec----CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHH
Q psy2198 120 PK------------CSDKIFITHC----YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDL 183 (279)
Q Consensus 120 ~~------------~~~~i~~~~~----~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l 183 (279)
-| ..+.+.+... .+-..-...+.++ ...+++++++|.+.+..+. ....++
T Consensus 481 GD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkl---laerpn~~~iDEF~AhLD~-----------~TA~rV 546 (593)
T COG2401 481 GDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKL---LAERPNVLLIDEFAAHLDE-----------LTAVRV 546 (593)
T ss_pred CchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHH---HhcCCCcEEhhhhhhhcCH-----------HHHHHH
Confidence 11 1111112111 1111222233333 3468899999999986532 345679
Q ss_pred HHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 184 AHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 184 ~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
++.+.++|++.++|+++++|-..-.+.
T Consensus 547 ArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 547 ARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 999999999999999999987655543
No 449
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.28 E-value=1.1e-05 Score=63.82 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=64.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCc---EEEEecC--C
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDK---IFITHCY--E 133 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~--~ 133 (279)
..+.+++|+||||+|||+++..++..... ..+...+ ..+. ..+... .... ++..... .
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~~~--~~~~~~~-~~~~-------------~~g~~~-~~~~~~~i~~~~~lS~G 81 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAIGLALGG--AQSATRR-RSGV-------------KAGCIV-AAVSAELIFTRLQLSGG 81 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHh--cchhhhc-cCcc-------------cCCCcc-eeeEEEEehheeecccc
Confidence 34479999999999999999997776642 1111111 0000 000000 0000 0111111 1
Q ss_pred HHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 134 FIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 134 ~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
..+.......+......+++++++|++..-.+. .....+.+.+.++..+ ++++|+++|......
T Consensus 82 ~~~~~~la~~L~~~~~~~~~llllDEp~~gld~-----------~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~ 145 (162)
T cd03227 82 EKELSALALILALASLKPRPLYILDEIDRGLDP-----------RDGQALAEAILEHLVK-GAQVIVITHLPELAE 145 (162)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCH-----------HHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH
Confidence 222222222222101247899999999874332 1234566777777665 899999999876543
No 450
>KOG0065|consensus
Probab=98.28 E-value=1e-06 Score=87.71 Aligned_cols=145 Identities=16% Similarity=0.231 Sum_probs=80.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHH---HHHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTA---RLAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~---~~~~~~~~~~~~~~~--~~ 123 (279)
-|+.+ .|-+.||.++++.|++|+|||||+..++.....+- -.|-+.|++... +.+ |.....+++--.-+. +.
T Consensus 806 LL~~V-~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~-I~Gdi~i~G~p~-~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 806 LLNNV-SGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGY-IEGDILISGFPK-DQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred hhhcC-ceEecCCceeehhcCCCCchHHHHHHHhcCcccce-EEeEEEECCeeC-chhhhccccceeecccccCcccchH
Confidence 45555 67899999999999999999999999987652100 012455655532 111 112222211100000 11
Q ss_pred C------cEEEEecCCHHHHHHHHHhhhc---c----------------------------CCCCe-eEEEEeCcchhhc
Q psy2198 124 D------KIFITHCYEFIDLKRTLESQSG---F----------------------------IENKV-GMIVIDSIAGIFR 165 (279)
Q Consensus 124 ~------~i~~~~~~~~~~l~~~i~~~~~---~----------------------------~~~~~-~lvvID~l~~~~~ 165 (279)
+ .+......+.++-.+.+.++++ + ..-+| -++++|+.+.-.+
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 1 1122222233333233322221 1 01356 7788899887433
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEe-ccccccc
Q psy2198 166 NTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICT-NQVTSAM 208 (279)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v-~h~~~~~ 208 (279)
. +...-+++.+++++. .|-||+++ +|++.+.
T Consensus 963 s-----------qaA~~i~~~lrkla~-tGqtIlCTIHQPS~~i 994 (1391)
T KOG0065|consen 963 S-----------QAAAIVMRFLRKLAD-TGQTILCTIHQPSIDI 994 (1391)
T ss_pred H-----------HHHHHHHHHHHHHHh-cCCeEEEEecCCcHHH
Confidence 2 334568899999998 79999985 6666654
No 451
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.28 E-value=9.8e-07 Score=72.38 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.7
Q ss_pred ccCC-cEEEEEcCCCCcHHHHHHHHHH
Q psy2198 58 IHAG-GITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 58 l~~G-~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
+.+| +++.|+||||+|||||+..++.
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHH
Confidence 4566 5899999999999999999883
No 452
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.28 E-value=5.2e-06 Score=77.34 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=77.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe--------EEEEECCCC--CCHHHHHHHHHhCC-CCCcc--
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG--------VLYICTESV--FPTARLAQLCELSP-LAKPK-- 121 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g--------vlyi~~e~~--~~~~~~~~~~~~~~-~~~~~-- 121 (279)
.-.+.+|+-++|+||||+|||||+..+++... +..|. +-|++-+.. .+...+...+.... .....
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~ 419 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV 419 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHH
Confidence 45799999999999999999999999987764 22231 456655432 11111222222111 11100
Q ss_pred --ccCcEEEE--------ecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy2198 122 --CSDKIFIT--------HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191 (279)
Q Consensus 122 --~~~~i~~~--------~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la 191 (279)
.+.++-+. ...+-.+-.+.....+ .-.+++++|+|+.+...+.+ .+ .+|....
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~l--l~~~pNvLiLDEPTNhLDi~-----------s~----~aLe~aL 482 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKL--LLQPPNLLLLDEPTNHLDIE-----------SL----EALEEAL 482 (530)
T ss_pred HHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHH--hccCCCEEEEcCCCccCCHH-----------HH----HHHHHHH
Confidence 11121111 1122222222222221 34689999999999754321 22 3444444
Q ss_pred HHcCcEEEEecccccccCC
Q psy2198 192 IKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 192 ~~~~~~vi~v~h~~~~~~~ 210 (279)
.++.-+||+|+|.+.-.+.
T Consensus 483 ~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 483 LDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HhCCCeEEEEeCCHHHHHh
Confidence 4699999999999887764
No 453
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.28 E-value=8.5e-06 Score=78.37 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=31.6
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYI 97 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi 97 (279)
--+.+|++++|+||||||||||+..+++... +..|.+++
T Consensus 340 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~ 378 (635)
T PRK11147 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHC 378 (635)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEE
Confidence 3689999999999999999999999998753 44454443
No 454
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=3.7e-06 Score=63.80 Aligned_cols=100 Identities=27% Similarity=0.276 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRT 140 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 140 (279)
+.++.|.||.|+||||++.+++.... ....++|++.++... ..... .+ +.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~----~~~~~--------------------~~-~~~~ 53 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRD----RRLAD--------------------PD-LLEY 53 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHH----HHHhh--------------------hh-hHHH
Confidence 56899999999999999999998774 345599999886511 11000 00 2222
Q ss_pred HHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHc-CcEEEEeccccccc
Q psy2198 141 LESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKH-RIVVICTNQVTSAM 208 (279)
Q Consensus 141 i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~-~~~vi~v~h~~~~~ 208 (279)
+.+.. ..+..+++||+++.+ ..+...++.+.... ++.++++.......
T Consensus 54 ~~~~~---~~~~~~i~iDEiq~~-----------------~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 54 FLELI---KPGKKYIFIDEIQYL-----------------PDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HHHhh---ccCCcEEEEehhhhh-----------------ccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 22221 125688999999865 12345555555544 78888887665544
No 455
>KOG0060|consensus
Probab=98.27 E-value=1e-05 Score=74.25 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=29.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.--++.|+-++|+||+|||||.|++.+++.+.
T Consensus 455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred eeEecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 56899999999999999999999999998874
No 456
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=3.7e-06 Score=80.76 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=27.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
--+.+|++++|+||||||||||+..+++..
T Consensus 333 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999999876
No 457
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.26 E-value=1.1e-05 Score=70.80 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=31.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTE 100 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e 100 (279)
.+|+++.++||||+||||++..+++.+. ..++ |+.++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 4689999999999999999999999885 4444 6666554
No 458
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.25 E-value=1.1e-05 Score=66.76 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=32.9
Q ss_pred CCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.+++++++|+...-.+. .....+.+.|+++.+ .+.++|+++|......
T Consensus 150 ~~~~~lllDEp~~~lD~-----------~~~~~~~~~l~~~~~-~~~tii~itH~~~~~~ 197 (213)
T cd03279 150 ARLEALFIDEGFGTLDP-----------EALEAVATALELIRT-ENRMVGVISHVEELKE 197 (213)
T ss_pred CCCCEEEEeCCcccCCH-----------HHHHHHHHHHHHHHh-CCCEEEEEECchHHHH
Confidence 36789999999864332 223446666776654 4889999999776443
No 459
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=98.25 E-value=2.8e-05 Score=60.42 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLE 142 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~ 142 (279)
.+.|.|+.-||||++|..++... .+.++||.+...+|.+.-.++...+..-+ .....+..+.++........
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~-----~~~v~YvAT~~a~D~Em~~RI~~Hr~rRp---~~W~tvE~~~~l~~~L~~~~ 73 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGES-----GGQVLYVATGRAFDDEMQERIAHHRARRP---EHWRTVEAPLDLATLLEALI 73 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhh-----CCceEEEEecCCCCHHHHHHHHHHHhcCC---CcceEEeccccHHHHHHhcc
Confidence 58899999999999999999763 34499999999988777666655433221 12333444455444433322
Q ss_pred hhhccCCCCeeEEEEeCcchhhccccccchh-hHHHHHHHHHHHHHHHHHH-HcCcEEEEeccccccc
Q psy2198 143 SQSGFIENKVGMIVIDSIAGIFRNTYAEDKY-VQRAHDMRDLAHYLHELSI-KHRIVVICTNQVTSAM 208 (279)
Q Consensus 143 ~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~la~-~~~~~vi~v~h~~~~~ 208 (279)
+ .-++|++|+|+.+..+.+...+. -.....+...+..|-.... ..+..|+++|++-...
T Consensus 74 ~-------~~~~VLvDcLt~wvtNll~~~e~~~~~~~~~~~~~~~L~~al~~~~~~~ilVsNEvG~Gi 134 (175)
T COG2087 74 E-------PGDVVLVDCLTLWVTNLLFAGEKDWSAEAAIEAEIEALLAALSRAPGTVVLVSNEVGLGI 134 (175)
T ss_pred c-------CCCEEEEEcHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCCccEEEEecCccCCc
Confidence 2 33899999999987654432110 0012333444444433333 3445777777776654
No 460
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.5e-05 Score=70.69 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=92.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc--------ccCcEEE
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK--------CSDKIFI 128 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~ 128 (279)
-+++|+.++++|++|+||||+++.+...+. .+.|.+.+|+.+.- .-..+.+....+.-++ ...++.+
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir--~vtq~slR~aIg~VPQDtvLFNDti~yni~y 359 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIR--DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKY 359 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHH--HhHHHHHHHHhCcCcccceehhhhHHHHHhc
Confidence 689999999999999999999999999984 77889999998651 1112222333444433 2233333
Q ss_pred EecC-CHHHHHHHHHhh-----h---c-----------------------c---CCCCeeEEEEeCcchhhccccccchh
Q psy2198 129 THCY-EFIDLKRTLESQ-----S---G-----------------------F---IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 129 ~~~~-~~~~l~~~i~~~-----~---~-----------------------~---~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
.++. +.++..+..... + + + .-..|.++++|+-++-.+.
T Consensus 360 gr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt------- 432 (497)
T COG5265 360 GRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT------- 432 (497)
T ss_pred cCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh-------
Confidence 3322 222222221110 0 0 0 1157889999998875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhh
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMR 229 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~r 229 (279)
..-+++...|++.+ .|-|.+++.|--+..-+ +......-|.+.+......
T Consensus 433 ----~te~~iq~~l~~~~--~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 433 ----HTEQAIQAALREVS--AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred ----hHHHHHHHHHHHHh--CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHH
Confidence 12244666777766 57777777777666544 4555555566655444433
No 461
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=4.1e-05 Score=59.47 Aligned_cols=41 Identities=32% Similarity=0.401 Sum_probs=31.9
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.-+.|+.+++.||+|+|||+|++.+-..-. +..|.+-|.+.
T Consensus 24 ~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~ 64 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGN 64 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEeccc
Confidence 568899999999999999999998776553 55565655433
No 462
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.24 E-value=9.8e-06 Score=73.22 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|++++.-+.|+||||||||+++..++.... ...+.+.+.. +.....+ .+...
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~fi~i~~s~---------l~~k~~g--------------e~~~~ 226 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATFIRVVGSE---------FVQKYLG--------------EGPRM 226 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehHH---------HHHHhcc--------------hhHHH
Confidence 788899999999999999999999987653 1123332211 1111000 01112
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchh--hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKY--VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+.+.+... ....+.+++||++..+.......... ....+.+.+++..+..+....++.||++++.....+
T Consensus 227 lr~lf~~A---~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 227 VRDVFRLA---RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred HHHHHHHH---HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 22222222 23467999999999876433221111 112233344444554444456788888877555444
No 463
>PLN03073 ABC transporter F family; Provisional
Probab=98.23 E-value=8.9e-06 Score=78.88 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=28.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.-.+.+|++++|+||||||||||++.+++..
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999999999876
No 464
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.23 E-value=5.9e-05 Score=64.49 Aligned_cols=93 Identities=22% Similarity=0.218 Sum_probs=58.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKR 139 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 139 (279)
+|+.++++|++|+||||++..++..+. .....+.+++... .....+.++...... ..+.+....+..++..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~-~ri~~~~ql~~~~~~------~~~~~~~~~~~~~l~~ 144 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDH-SRIGTVQQLQDYVKT------IGFEVIAVRDEAAMTR 144 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCC-CCHHHHHHHHHHhhh------cCceEEecCCHHHHHH
Confidence 679999999999999999999998874 1223366676653 233333443322111 1233334456666666
Q ss_pred HHHhhhccCCCCeeEEEEeCcchh
Q psy2198 140 TLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 140 ~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
.+..+. ...+.++++||..+..
T Consensus 145 ~l~~l~--~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 145 ALTYFK--EEARVDYILIDTAGKN 166 (270)
T ss_pred HHHHHH--hcCCCCEEEEECCCCC
Confidence 655442 2346899999998875
No 465
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.22 E-value=1e-06 Score=83.28 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=31.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|+.+ +--+.+|++++|+|+||||||||+..+++...
T Consensus 20 il~~i-s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~ 56 (552)
T TIGR03719 20 ILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 56 (552)
T ss_pred eecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45544 55789999999999999999999999998763
No 466
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.22 E-value=6.9e-06 Score=64.27 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=40.2
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|-|+.+ .-.+..|+.+.+.||+|+|||||++.+.+++. ++.|.+++.-++
T Consensus 25 pV~~~v-slsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g 74 (235)
T COG4778 25 PVLRNV-SLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEG 74 (235)
T ss_pred eeeece-eEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCc
Confidence 345554 44678899999999999999999999999996 777777775544
No 467
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.19 E-value=1.2e-05 Score=69.50 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=72.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHH-HHHHHHHhCCCCCccccCcEEEEecCCHHHH
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTA-RLAQLCELSPLAKPKCSDKIFITHCYEFIDL 137 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 137 (279)
....++.|+|.+|+|||+||..++..........+++|++.....+.. ...++.........+. ....+..+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~ 90 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI------SDPKDIEEL 90 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS------SCCSSHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc------ccccccccc
Confidence 778999999999999999999999773333455678998877654433 3344443322111101 234566677
Q ss_pred HHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 138 KRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 138 ~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
...+.+.+. .+.-++|+|.+.... .+.++...+... ..++.||+++....
T Consensus 91 ~~~l~~~L~---~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~~~kilvTTR~~~ 140 (287)
T PF00931_consen 91 QDQLRELLK---DKRCLLVLDDVWDEE--------------DLEELREPLPSF--SSGSKILVTTRDRS 140 (287)
T ss_dssp HHHHHHHHC---CTSEEEEEEEE-SHH--------------HH-------HCH--HSS-EEEEEESCGG
T ss_pred cccchhhhc---cccceeeeeeecccc--------------cccccccccccc--cccccccccccccc
Confidence 777777653 347999999876421 222333333322 36899999986543
No 468
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.18 E-value=1.8e-06 Score=90.30 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=72.9
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCC-ccccCcEEE
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK-PKCSDKIFI 128 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 128 (279)
|+.+ .--+++|++++|+||+|||||||+..+++... +..|.+++++.-. +..+...+. ..+.+|+.+
T Consensus 654 l~~i-sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~i~--------yv~Q~~~l~~~Ti~eNI~~ 721 (1522)
T TIGR00957 654 LNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGSVA--------YVPQQAWIQNDSLRENILF 721 (1522)
T ss_pred eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECCEEE--------EEcCCccccCCcHHHHhhc
Confidence 4433 34689999999999999999999999998774 5556555554211 011111111 114455554
Q ss_pred EecCCHHHHHHHHHhh--hcc--CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 129 THCYEFIDLKRTLESQ--SGF--IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 129 ~~~~~~~~l~~~i~~~--~~~--~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
....+.+...+.+... .+. ..+.-+.-.+++- +...+.++++...+++++- .+..+++.+++
T Consensus 722 g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~---------g~~LSGGQkqRiaLARAl~-----~~~~illLDEp 787 (1522)
T TIGR00957 722 GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEK---------GVNLSGGQKQRVSLARAVY-----SNADIYLFDDP 787 (1522)
T ss_pred CCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCC---------CCCCCHHHHHHHHHHHHHh-----cCCCEEEEcCC
Confidence 4333433333322211 000 0000000011111 1112235667777888887 68888999988
Q ss_pred ccccCC
Q psy2198 205 TSAMTH 210 (279)
Q Consensus 205 ~~~~~~ 210 (279)
++..+.
T Consensus 788 ~saLD~ 793 (1522)
T TIGR00957 788 LSAVDA 793 (1522)
T ss_pred ccccCH
Confidence 888775
No 469
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.18 E-value=2.1e-05 Score=64.69 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=26.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
....|+++.|.||+|+||||+++.++....
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999886654
No 470
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.17 E-value=1.2e-06 Score=72.04 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCeeEEEEeCcchhhccccccchhhHHHHHHH-HHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMR-DLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
.+++++++|+...-.+. .... .+.+.|+++.++.+.++|+++|....
T Consensus 138 ~~p~illlDEP~~~LD~-----------~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~ 185 (204)
T cd03240 138 SNCGILALDEPTTNLDE-----------ENIEESLAEIIEERKSQKNFQLIVITHDEEL 185 (204)
T ss_pred cCCCEEEEcCCccccCH-----------HHHHHHHHHHHHHHHhccCCEEEEEEecHHH
Confidence 57899999999875432 1233 56777777766558899999997543
No 471
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.17 E-value=2e-05 Score=65.58 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=26.5
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.+.+|+++.|.||+|+||||+++.++....
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~ 56 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITI 56 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999998554
No 472
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.17 E-value=1e-05 Score=74.84 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=27.2
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|+++..-++|+||||||||++++.++..+.
T Consensus 211 ~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 211 YDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred ccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 3677777899999999999999999998774
No 473
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.16 E-value=1.3e-05 Score=69.20 Aligned_cols=135 Identities=18% Similarity=0.280 Sum_probs=74.5
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcccccCCCCCCCCCceeccCChhhhhhhC-----C-CccCCcEEEEEcCCCCcHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILK-----G-GIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tg~~~LD~~L~-----g-Gl~~G~l~~I~G~~GsGKTtl~ 78 (279)
+.+...|+++.-++++.+........ ++ ....=...|.+.|. . -++.+.++.|+||+|+||||++
T Consensus 141 ~~L~~~gv~~~la~~L~~~l~~~~~~--~~-------~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 141 ERLLRAGVSPELARELLEKLPERADA--ED-------AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred HHHHHCCCCHHHHHHHHHHhhccCCH--HH-------HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHH
Confidence 45678899998888888876642100 00 00001111212111 0 1346889999999999999999
Q ss_pred HHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEe
Q psy2198 79 LQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVID 158 (279)
Q Consensus 79 ~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID 158 (279)
..++..+........|.+++.+.. ......++...... -++.+....+..++...+... .+.++|+||
T Consensus 212 ~kLa~~~~~~~g~~~V~li~~D~~-r~~a~eql~~~~~~------~~~p~~~~~~~~~l~~~l~~~-----~~~d~vliD 279 (282)
T TIGR03499 212 AKLAARFVLEHGNKKVALITTDTY-RIGAVEQLKTYAKI------LGVPVKVARDPKELRKALDRL-----RDKDLILID 279 (282)
T ss_pred HHHHHHHHHHcCCCeEEEEECCcc-chhHHHHHHHHHHH------hCCceeccCCHHHHHHHHHHc-----cCCCEEEEe
Confidence 999988752100124888877642 21222222111000 112223344556666666554 246999999
Q ss_pred Cc
Q psy2198 159 SI 160 (279)
Q Consensus 159 ~l 160 (279)
..
T Consensus 280 t~ 281 (282)
T TIGR03499 280 TA 281 (282)
T ss_pred CC
Confidence 75
No 474
>PLN03073 ABC transporter F family; Provisional
Probab=98.16 E-value=1.5e-05 Score=77.25 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=34.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCeEEEEECC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQPHKGVLYICTE 100 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~~~~gvlyi~~e 100 (279)
.--+.+|+.++|+|+||||||||++.+++.... .+..+.+.|+..+
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 347999999999999999999999999975311 1234447776544
No 475
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.15 E-value=1.7e-05 Score=66.67 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.+..+.|+||+|+|||+|++.++.... .....+.|+..+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHH
Confidence 446899999999999999999888764 1223388887653
No 476
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.15 E-value=1.1e-06 Score=67.42 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=36.5
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
-+++|++++|+|++|||||||+..+++... +..|.+++++...
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~ 49 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDI 49 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEG
T ss_pred EEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccc
Confidence 578999999999999999999999988874 5667888876644
No 477
>KOG2355|consensus
Probab=98.14 E-value=6.8e-05 Score=60.61 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+..+++.+|+++--.+ .-...++.+.|++-+++.|+||+..+|..+..+.
T Consensus 164 ~PfkVLLLDEVTVDLD-----------VlARadLLeFlkeEce~RgatIVYATHIFDGLe~ 213 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLD-----------VLARADLLEFLKEECEQRGATIVYATHIFDGLET 213 (291)
T ss_pred cceeEEEeeeeEeehH-----------HHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh
Confidence 4678899999885221 1233568899999999999999999999988776
No 478
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=98.14 E-value=3.8e-06 Score=66.64 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=65.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLES 143 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~ 143 (279)
+.|.|...||||.+|..++... .+.++|+.+-...|.+...++..++..- ......+..+.++.+.....
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~~-----~~~~~YiAT~~~~D~em~~RI~~H~~~R---~~~w~tiE~~~~l~~~~~~~-- 70 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALSF-----GGPVTYIATARPFDEEMRERIARHRQRR---PKGWITIEEPRDLAEALEEL-- 70 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS-------SCEEEEESSHHHHHHHHHHHHHHHHHS---STCEEEEE-SS-GGGTS-TT--
T ss_pred CEEeCCCCcchHHHHHHHHHhc-----CCCcEEEeCCCCCCHHHHHHHHHHHHhC---CCCcEEEecchhHHHHHHHh--
Confidence 5799999999999999999432 2459999998776655444443322111 11222333344333322111
Q ss_pred hhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 144 QSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 144 ~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
...+.++||+++.+..+.+...... ......++.+.+..+.+...-.||+.|++....
T Consensus 71 ------~~~~~vLlDclt~wl~n~l~~~~~~-~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~Gi 128 (167)
T PF02283_consen 71 ------SPGDVVLLDCLTLWLANLLFAEEDD-EEDILEEIERLLEALRERNADLVIVSNEVGWGI 128 (167)
T ss_dssp ------S-T-EEEEE-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--SEEEEEEE---SS-
T ss_pred ------ccCCeEEEeCHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHccCCCEEEEEcCCCCCC
Confidence 1248999999999876544322110 123334444444444444455666667666554
No 479
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.13 E-value=1.7e-05 Score=67.52 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=24.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMC 82 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~ 82 (279)
.+|.|.++.|+|++|||||||+..+.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHH
Confidence 58999999999999999999999774
No 480
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.13 E-value=1.2e-05 Score=73.15 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=49.9
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
....++.||+..+|.++ -+.+|+.+.|.|++|+|||||+..++.... .+.+++.+.+|..
T Consensus 142 ~i~e~l~TGi~~ID~l~--~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGer~ 201 (441)
T PRK09099 142 MVEAPLPTGVRIVDGLM--TLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGERG 201 (441)
T ss_pred CcccccCCCceecccee--eecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccCh
Confidence 34568999999999996 578999999999999999999999987763 4556777777755
No 481
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.12 E-value=1.7e-06 Score=69.91 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=61.6
Q ss_pred CCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhh
Q psy2198 150 NKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHD 227 (279)
Q Consensus 150 ~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~ 227 (279)
..++++|-|+.+..... ....++++.|.++....|.++++++|.-+.... +...+.+-|...++++.
T Consensus 175 nqPrLLIADEPTN~~e~-----------~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~ 243 (330)
T COG4170 175 NQPRLLIADEPTNSMEP-----------TTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPS 243 (330)
T ss_pred cCCceEeccCCCcccCc-----------cHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccch
Confidence 46788888887764321 123457888888888899999999999888776 67788888999999888
Q ss_pred hheeeeccccccc
Q psy2198 228 MRDLAHYLHEISI 240 (279)
Q Consensus 228 ~rl~l~k~~~~~~ 240 (279)
..++-..++...+
T Consensus 244 e~l~~~PhHPYTq 256 (330)
T COG4170 244 EELVTMPHHPYTQ 256 (330)
T ss_pred hHHhcCCCCchHH
Confidence 8888777776553
No 482
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.11 E-value=6.7e-06 Score=68.41 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL 141 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i 141 (279)
..+.|+|++|+|||.|++.++..+....+...++|++.+.. ...+.... . .....++...+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f-----~~~~~~~~-------~-------~~~~~~~~~~~ 95 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF-----IREFADAL-------R-------DGEIEEFKDRL 95 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH-----HHHHHHHH-------H-------TTSHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH-----HHHHHHHH-------H-------cccchhhhhhh
Confidence 35789999999999999999987753234455999988743 12221110 0 12233333333
Q ss_pred HhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 142 ESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 142 ~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
+ ..++++||.+..+.. .......+...+..+.. .|..+|++++..
T Consensus 96 ~--------~~DlL~iDDi~~l~~----------~~~~q~~lf~l~n~~~~-~~k~li~ts~~~ 140 (219)
T PF00308_consen 96 R--------SADLLIIDDIQFLAG----------KQRTQEELFHLFNRLIE-SGKQLILTSDRP 140 (219)
T ss_dssp C--------TSSEEEEETGGGGTT----------HHHHHHHHHHHHHHHHH-TTSEEEEEESS-
T ss_pred h--------cCCEEEEecchhhcC----------chHHHHHHHHHHHHHHh-hCCeEEEEeCCC
Confidence 2 459999999987532 12233556666665554 577777776443
No 483
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=71.66 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=69.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|+.++.-++|+||||+|||++++.++.... ...+.+.+... ...... .....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~fi~V~~seL-----~~k~~G------------------e~~~~ 264 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS-----ATFLRVVGSEL-----IQKYLG------------------DGPKL 264 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CCEEEEecchh-----hhhhcc------------------hHHHH
Confidence 678888899999999999999999998763 11333333221 000000 01111
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchh--hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKY--VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+...+... ....+.+++||++..+.......... ....+.+..++..+..+....++.||++++.....+
T Consensus 265 vr~lF~~A---~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LD 336 (438)
T PTZ00361 265 VRELFRVA---EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLD 336 (438)
T ss_pred HHHHHHHH---HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhh
Confidence 22222222 23467899999998876433221111 112334445555565555566888888887554443
No 484
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.11 E-value=6.5e-05 Score=63.67 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=40.9
Q ss_pred CeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhhe
Q psy2198 151 KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRD 230 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl 230 (279)
.++++++|+.+...+. .....+.+.|+++++ .+.++|+++|...... .++..+
T Consensus 177 ~p~~lllDEPt~~LD~-----------~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~~---------------~~d~i~ 229 (247)
T cd03275 177 PAPFFVLDEVDAALDN-----------TNVGKVASYIREQAG-PNFQFIVISLKEEFFS---------------KADALV 229 (247)
T ss_pred CCCEEEEecccccCCH-----------HHHHHHHHHHHHhcc-CCcEEEEEECCHHHHh---------------hCCeEE
Confidence 5799999999875432 223456667777765 4899999999754332 366666
Q ss_pred eeeccccc
Q psy2198 231 LAHYLHEI 238 (279)
Q Consensus 231 ~l~k~~~~ 238 (279)
.+.|.+.-
T Consensus 230 ~~~~~~~~ 237 (247)
T cd03275 230 GVYRDQEC 237 (247)
T ss_pred EEEecCCC
Confidence 77776643
No 485
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.11 E-value=7.3e-05 Score=59.68 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=50.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEe---cCCHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITH---CYEFIDLK 138 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~l~ 138 (279)
++.+.|++|+||||++..++..+. ..+ .+++++++.. ......++...... .++.+.. ..++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~-~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~ 71 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTY-RPAAIEQLRVLGEQ------VGVPVFEEGEGKDPVSIA 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCC-ChHHHHHHHHhccc------CCeEEEecCCCCCHHHHH
Confidence 678999999999999999998875 333 3888887643 22222333221111 1222222 22333333
Q ss_pred -HHHHhhhccCCCCeeEEEEeCcch
Q psy2198 139 -RTLESQSGFIENKVGMIVIDSIAG 162 (279)
Q Consensus 139 -~~i~~~~~~~~~~~~lvvID~l~~ 162 (279)
+.+... ...+.++++||....
T Consensus 72 ~~~~~~~---~~~~~d~viiDt~g~ 93 (173)
T cd03115 72 KRAIEHA---REENFDVVIVDTAGR 93 (173)
T ss_pred HHHHHHH---HhCCCCEEEEECccc
Confidence 222222 335778999999765
No 486
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.11 E-value=1.9e-06 Score=89.94 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=34.0
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
--+++|++++|+||+|||||||+..+++... +..|.+++++
T Consensus 447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g 487 (1490)
T TIGR01271 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG 487 (1490)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC
Confidence 4689999999999999999999999998874 5556555544
No 487
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.10 E-value=1.3e-05 Score=72.76 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=48.1
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
....+.||+..+|.++ -+.+|+.+.|.|++|+|||||+..++.... ...+++.+.++..
T Consensus 135 v~~~l~tGi~aID~ll--~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGeRg 193 (433)
T PRK07594 135 ITQPLMTGIRAIDSVA--TCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGERG 193 (433)
T ss_pred HhheeCCCceeeeeee--ecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECCCc
Confidence 3557889999999985 799999999999999999999988887653 4445666667754
No 488
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.10 E-value=2.3e-05 Score=73.24 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
=.+++|+-+.|.|+||||||+|.+.+++...
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 4789999999999999999999999998763
No 489
>PRK09183 transposase/IS protein; Provisional
Probab=98.10 E-value=1.7e-05 Score=67.73 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=32.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
+..|+.+.|+||+|+|||+|+..++..+. .....++|++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeHH
Confidence 78899999999999999999999977654 122348887654
No 490
>PF05729 NACHT: NACHT domain
Probab=98.09 E-value=7.4e-05 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQV 87 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~ 87 (279)
.++.|.|++|+||||++..++..+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh
Confidence 36899999999999999999988763
No 491
>KOG0727|consensus
Probab=98.08 E-value=2.1e-05 Score=65.37 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=74.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|+.|.+-++++||||||||.|+...+.+-. ..-+-+.+. +-+.+++++... -..+
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~-----a~firvvgs-----efvqkylgegpr---------------mvrd 239 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGS-----EFVQKYLGEGPR---------------MVRD 239 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccc-----hheeeeccH-----HHHHHHhccCcH---------------HHHH
Confidence 788888899999999999999998776543 112222222 223333332110 0122
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHH--HHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQR--AHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+..+. ....|.+++||++.++....++...+++| ++.+-+++..+.-|-...|+-||+.+.-....+.
T Consensus 240 vfrla------kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldp 309 (408)
T KOG0727|consen 240 VFRLA------KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDP 309 (408)
T ss_pred HHHHH------hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCH
Confidence 22222 34577999999999987666654433333 3444555666666666778889888765555543
No 492
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.08 E-value=4.8e-05 Score=65.31 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=73.7
Q ss_pred hHhhcCccHHHHHHHHHHHhhcccccCCCCCCCCCceeccCChhhhhhhC-------CCccCCcEEEEEcCCCCcHHHHH
Q psy2198 6 QMLKLGFQEWEVNKVKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILK-------GGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 6 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tg~~~LD~~L~-------gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
.+.+.|++..-++++.+..++................+ ...|-.+++ -.-.++.++.++|++|+||||++
T Consensus 13 ~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 13 ILLESDVGYEVVEKIIEALKKELKGKKVKDAELLKEIL---KEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTI 89 (272)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHH---HHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHH
Confidence 45778999999999988776542110000000000000 011111111 11234689999999999999999
Q ss_pred HHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEe---cCCHHHH-HHHHHhhhccCCCCee
Q psy2198 79 LQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITH---CYEFIDL-KRTLESQSGFIENKVG 153 (279)
Q Consensus 79 ~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~l-~~~i~~~~~~~~~~~~ 153 (279)
..++..+. ..+ .|+.+++.. +...-..++..+.... .+.+.. ..++... ...+... ...+.+
T Consensus 90 akLA~~l~---~~g~~V~li~~D~-~r~~a~~ql~~~~~~~------~i~~~~~~~~~dp~~~~~~~l~~~---~~~~~D 156 (272)
T TIGR00064 90 AKLANKLK---KQGKSVLLAAGDT-FRAAAIEQLEEWAKRL------GVDVIKQKEGADPAAVAFDAIQKA---KARNID 156 (272)
T ss_pred HHHHHHHH---hcCCEEEEEeCCC-CCHHHHHHHHHHHHhC------CeEEEeCCCCCCHHHHHHHHHHHH---HHCCCC
Confidence 99998875 333 477777664 3322223322111111 122211 2223222 2223222 235689
Q ss_pred EEEEeCcchh
Q psy2198 154 MIVIDSIAGI 163 (279)
Q Consensus 154 lvvID~l~~~ 163 (279)
+|+||.....
T Consensus 157 ~ViIDT~G~~ 166 (272)
T TIGR00064 157 VVLIDTAGRL 166 (272)
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 493
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.08 E-value=2.6e-05 Score=64.72 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
++++|+||||+||||+++.++....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH
Confidence 8999999999999999999986554
No 494
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.08 E-value=2.8e-06 Score=80.48 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=31.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYI 97 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi 97 (279)
--+.+|++++|.|+||||||||+..+++... +..|.+++
T Consensus 345 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~ 383 (556)
T PRK11819 345 FSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKI 383 (556)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE
Confidence 4689999999999999999999999998763 44554444
No 495
>KOG0736|consensus
Probab=98.08 E-value=2.2e-05 Score=74.32 Aligned_cols=121 Identities=16% Similarity=0.125 Sum_probs=73.2
Q ss_pred hhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecC
Q psy2198 53 ILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCY 132 (279)
Q Consensus 53 ~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 132 (279)
+++-|+.+.+-+.++||||+|||.+|...|-.+. .-|++-..+ +.+..++++ .+.
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP---ELLNMYVGq---------------SE~ 751 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP---ELLNMYVGQ---------------SEE 751 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH---HHHHHHhcc---------------hHH
Confidence 3456999999999999999999999999887774 344444432 222222221 123
Q ss_pred CHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccc-cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 133 EFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNT-YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 133 ~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
+..++.+..+. -.|++++.|++..+.+.. ..++.+.-.-+.+.++...|..+.+...--|+++.-.
T Consensus 752 NVR~VFerAR~------A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGAT 818 (953)
T KOG0736|consen 752 NVREVFERARS------AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGAT 818 (953)
T ss_pred HHHHHHHHhhc------cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecC
Confidence 33444444433 467999999999987643 2222221133455666666666665344445555433
No 496
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=3.3e-05 Score=69.38 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQ--PHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDL 137 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 137 (279)
.+.++.++||+|+||||.+..++..+.... ....|.+++... +...-..++......+ ++.+....+..++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~l------gvpv~~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIM------GIPVKAIESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcC------CcceEeeCcHHHH
Confidence 356999999999999999999998775321 122366666553 2333333322111001 2233344455666
Q ss_pred HHHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 138 KRTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 138 ~~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
...+.+. .+.++|+||..+..
T Consensus 246 ~~~L~~~-----~~~DlVLIDTaGr~ 266 (388)
T PRK12723 246 KEEITQS-----KDFDLVLVDTIGKS 266 (388)
T ss_pred HHHHHHh-----CCCCEEEEcCCCCC
Confidence 6665554 36799999998764
No 497
>KOG0059|consensus
Probab=98.07 E-value=6.8e-06 Score=81.65 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
...+++|++.++.|+||+||||+...+++... +.+|..|+.+.+.
T Consensus 585 s~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i 629 (885)
T KOG0059|consen 585 SFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDI 629 (885)
T ss_pred EEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCcc
Confidence 56899999999999999999999999998874 7788888866654
No 498
>PRK08181 transposase; Validated
Probab=98.07 E-value=2.4e-05 Score=66.92 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=32.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
+..++-+.|+||+|+|||.|+..++..+. .....|+|++..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~~~ 143 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTRTT 143 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeeeHH
Confidence 45778899999999999999999988775 122238888754
No 499
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=2.6e-05 Score=70.68 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=70.9
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHH-HHHHHhCCCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARL-AQLCELSPLA 118 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~-~~~~~~~~~~ 118 (279)
...+.||+..+|.++ .+.+|+.+.|+|++|+|||+|+..++.... +..+++.+.++......+. .+.+... ++
T Consensus 137 ~~~l~TGiraID~ll--~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~-gl 210 (432)
T PRK06793 137 TDVFETGIKSIDSML--TIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEE-GM 210 (432)
T ss_pred hhccCCCCEEEeccc--eecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhc-cc
Confidence 357889999999975 689999999999999999999999998763 4556776666654332222 2222221 11
Q ss_pred CccccCcEEEEecCCH---HHHH-----HHHHhhhccCCCCeeEEEEeCcchhhc
Q psy2198 119 KPKCSDKIFITHCYEF---IDLK-----RTLESQSGFIENKVGMIVIDSIAGIFR 165 (279)
Q Consensus 119 ~~~~~~~i~~~~~~~~---~~l~-----~~i~~~~~~~~~~~~lvvID~l~~~~~ 165 (279)
...+.+....+. .... ..+.+... ..+..-++++|+++....
T Consensus 211 ----~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr-~~G~~VLlilDslTr~a~ 260 (432)
T PRK06793 211 ----RKSVVVVATSDESHLMQLRAAKLATSIAEYFR-DQGNNVLLMMDSVTRFAD 260 (432)
T ss_pred ----ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCcEEEEecchHHHHH
Confidence 122233332221 1111 11111111 446788999999998643
No 500
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.06 E-value=1.2e-05 Score=65.07 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+++|+||||+||||+++.++....
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~ 24 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI 24 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999999985543
Done!