Query psy2198
Match_columns 279
No_of_seqs 172 out of 2674
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 18:43:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lda_A DNA repair protein RAD5 100.0 1E-30 3.5E-35 233.8 18.9 232 5-237 117-365 (400)
2 2i1q_A DNA repair and recombin 100.0 3.5E-30 1.2E-34 225.5 18.0 232 5-237 37-293 (322)
3 1v5w_A DMC1, meiotic recombina 100.0 2.5E-30 8.5E-35 228.1 17.0 232 5-237 61-311 (343)
4 2z43_A DNA repair and recombin 100.0 3.8E-30 1.3E-34 225.4 15.0 232 5-237 46-292 (324)
5 1pzn_A RAD51, DNA repair and r 100.0 4E-29 1.4E-33 220.7 17.2 232 5-237 69-320 (349)
6 3hr8_A Protein RECA; alpha and 100.0 8.7E-27 3E-31 204.8 20.8 219 40-270 39-272 (356)
7 3io5_A Recombination and repai 100.0 4.3E-27 1.5E-31 201.2 18.0 189 39-239 3-205 (333)
8 1n0w_A DNA repair protein RAD5 99.9 1.3E-26 4.3E-31 194.4 17.7 198 39-237 2-211 (243)
9 2zr9_A Protein RECA, recombina 99.9 6E-25 2E-29 193.7 21.1 189 36-236 35-231 (349)
10 1u94_A RECA protein, recombina 99.9 5.8E-25 2E-29 193.9 20.4 190 35-236 36-233 (356)
11 1xp8_A RECA protein, recombina 99.9 1E-24 3.6E-29 192.9 19.2 190 36-237 48-245 (366)
12 2cvh_A DNA repair and recombin 99.9 1.5E-24 5.2E-29 179.0 18.2 186 42-237 1-187 (220)
13 4a74_A DNA repair and recombin 99.9 3.3E-24 1.1E-28 178.2 18.7 187 39-236 3-201 (231)
14 3cmu_A Protein RECA, recombina 99.9 6.5E-23 2.2E-27 209.9 17.9 187 37-235 707-901 (2050)
15 3bh0_A DNAB-like replicative h 99.9 3.7E-22 1.3E-26 173.9 19.8 188 39-236 47-267 (315)
16 2zts_A Putative uncharacterize 99.9 1.1E-22 3.8E-27 170.9 15.0 187 37-240 6-213 (251)
17 4a1f_A DNAB helicase, replicat 99.9 6.6E-23 2.3E-27 179.0 10.8 188 39-236 25-242 (338)
18 3cmw_A Protein RECA, recombina 99.9 5.9E-22 2E-26 201.1 17.5 188 37-236 358-553 (1706)
19 2q6t_A DNAB replication FORK h 99.9 2.1E-21 7.1E-26 176.8 19.4 193 39-237 179-400 (444)
20 3cmu_A Protein RECA, recombina 99.9 7.8E-22 2.7E-26 202.0 17.6 189 36-236 357-553 (2050)
21 3cmw_A Protein RECA, recombina 99.9 1.5E-21 5E-26 198.2 18.2 224 37-272 707-945 (1706)
22 3bgw_A DNAB-like replicative h 99.9 2.3E-21 8E-26 176.0 17.8 190 38-237 175-397 (444)
23 2dr3_A UPF0273 protein PH0284; 99.9 3.1E-21 1.1E-25 161.8 16.3 175 41-237 3-199 (247)
24 1q57_A DNA primase/helicase; d 99.9 1.6E-20 5.6E-25 173.6 20.0 190 38-237 219-444 (503)
25 2r6a_A DNAB helicase, replicat 99.9 7.7E-21 2.6E-25 173.6 16.4 190 39-237 182-401 (454)
26 2w0m_A SSO2452; RECA, SSPF, un 99.8 5.1E-19 1.7E-23 146.8 17.4 176 41-238 3-195 (235)
27 1cr0_A DNA primase/helicase; R 99.8 3E-18 1E-22 147.9 17.6 189 39-237 13-237 (296)
28 2ehv_A Hypothetical protein PH 99.8 2.7E-17 9.3E-22 137.9 17.5 182 38-237 7-210 (251)
29 1nlf_A Regulatory protein REPA 99.7 2.5E-17 8.7E-22 140.9 12.6 155 39-208 9-184 (279)
30 1tf7_A KAIC; homohexamer, hexa 99.7 2.5E-15 8.5E-20 139.5 18.4 181 39-240 259-448 (525)
31 2vhj_A Ntpase P4, P4; non- hyd 99.6 5.2E-15 1.8E-19 127.2 7.3 131 41-205 104-236 (331)
32 3bs4_A Uncharacterized protein 99.5 3.8E-13 1.3E-17 112.9 13.8 59 42-102 2-60 (260)
33 1tf7_A KAIC; homohexamer, hexa 99.5 4.7E-13 1.6E-17 124.2 15.6 157 39-208 17-188 (525)
34 3tif_A Uncharacterized ABC tra 99.2 7.3E-12 2.5E-16 104.2 6.2 143 49-206 20-207 (235)
35 3gfo_A Cobalt import ATP-bindi 99.2 3.1E-12 1.1E-16 108.7 1.1 145 49-209 23-208 (275)
36 3tui_C Methionine import ATP-b 99.1 1.7E-10 5.9E-15 101.3 10.5 146 48-209 42-228 (366)
37 4g1u_C Hemin import ATP-bindin 99.1 5.7E-11 2E-15 100.5 7.0 145 49-209 26-212 (266)
38 2pcj_A ABC transporter, lipopr 99.1 1.7E-10 5.8E-15 95.2 9.0 142 49-207 19-202 (224)
39 3rlf_A Maltose/maltodextrin im 99.1 2.5E-12 8.4E-17 113.7 -3.4 145 49-208 18-197 (381)
40 2olj_A Amino acid ABC transpor 99.1 1.2E-10 4E-15 98.4 6.6 143 49-208 39-222 (263)
41 1g6h_A High-affinity branched- 99.1 2.9E-11 9.8E-16 102.0 1.3 49 49-101 22-70 (257)
42 3fvq_A Fe(3+) IONS import ATP- 99.0 8.3E-12 2.8E-16 109.6 -2.6 145 49-208 19-202 (359)
43 2it1_A 362AA long hypothetical 99.0 7.1E-11 2.4E-15 104.0 3.4 145 49-208 18-197 (362)
44 1oxx_K GLCV, glucose, ABC tran 99.0 3.8E-11 1.3E-15 105.5 1.4 145 49-208 20-204 (353)
45 1v43_A Sugar-binding transport 99.0 7.7E-11 2.6E-15 104.1 2.8 145 49-208 26-205 (372)
46 1g29_1 MALK, maltose transport 99.0 6.6E-11 2.3E-15 104.7 1.9 145 49-208 18-203 (372)
47 3d31_A Sulfate/molybdate ABC t 99.0 5.8E-10 2E-14 97.7 7.9 144 49-208 15-191 (348)
48 2yyz_A Sugar ABC transporter, 99.0 6.6E-11 2.3E-15 104.0 1.4 144 49-208 18-197 (359)
49 1b0u_A Histidine permease; ABC 99.0 4.9E-11 1.7E-15 100.8 -0.1 49 49-101 21-69 (262)
50 2yz2_A Putative ABC transporte 99.0 3.3E-10 1.1E-14 95.9 5.0 144 49-209 22-202 (266)
51 1z47_A CYSA, putative ABC-tran 99.0 3.7E-10 1.3E-14 99.1 5.1 145 49-208 30-209 (355)
52 2ff7_A Alpha-hemolysin translo 99.0 8.5E-10 2.9E-14 92.3 7.0 49 49-101 24-72 (247)
53 3nh6_A ATP-binding cassette SU 99.0 1.3E-10 4.6E-15 100.0 1.8 50 49-102 69-118 (306)
54 2ixe_A Antigen peptide transpo 99.0 3.3E-10 1.1E-14 96.1 4.0 145 49-208 34-220 (271)
55 1vpl_A ABC transporter, ATP-bi 98.9 8.6E-11 2.9E-15 98.9 0.3 49 49-101 30-78 (256)
56 1sgw_A Putative ABC transporte 98.9 9.1E-09 3.1E-13 84.1 11.7 48 49-100 24-71 (214)
57 2qi9_C Vitamin B12 import ATP- 98.9 8E-10 2.7E-14 92.5 4.6 142 49-208 15-196 (249)
58 2onk_A Molybdate/tungstate ABC 98.9 6.8E-10 2.3E-14 92.5 3.9 138 50-208 15-190 (240)
59 1ji0_A ABC transporter; ATP bi 98.9 5.8E-11 2E-15 99.1 -2.7 143 50-208 22-202 (240)
60 4gp7_A Metallophosphoesterase; 98.9 1.3E-09 4.3E-14 86.1 4.8 59 149-208 99-162 (171)
61 2ihy_A ABC transporter, ATP-bi 98.9 1.8E-10 6.2E-15 98.1 -0.6 49 49-101 36-84 (279)
62 3gd7_A Fusion complex of cysti 98.9 1.3E-09 4.4E-14 96.9 4.4 50 48-102 35-84 (390)
63 2nq2_C Hypothetical ABC transp 98.9 1.2E-09 4E-14 91.8 3.8 141 49-208 20-192 (253)
64 2d2e_A SUFC protein; ABC-ATPas 98.8 7.5E-10 2.6E-14 92.9 1.4 51 49-101 18-68 (250)
65 3b5x_A Lipid A export ATP-bind 98.8 7.6E-09 2.6E-13 97.0 7.5 49 49-101 358-406 (582)
66 3qf4_A ABC transporter, ATP-bi 98.7 4.4E-09 1.5E-13 98.7 4.5 144 49-209 358-542 (587)
67 2ghi_A Transport protein; mult 98.7 5.4E-09 1.9E-13 88.1 4.3 48 49-101 35-82 (260)
68 1mv5_A LMRA, multidrug resista 98.7 1.2E-09 4.2E-14 91.1 0.4 48 49-100 17-64 (243)
69 4a82_A Cystic fibrosis transme 98.7 4.1E-09 1.4E-13 98.8 3.7 145 49-210 356-541 (578)
70 3b60_A Lipid A export ATP-bind 98.7 7.7E-09 2.6E-13 97.0 5.4 144 49-209 358-543 (582)
71 3qf4_B Uncharacterized ABC tra 98.7 4.9E-09 1.7E-13 98.6 3.6 44 56-102 376-419 (598)
72 2zu0_C Probable ATP-dependent 98.7 3.6E-09 1.2E-13 89.5 1.9 51 49-101 35-85 (267)
73 1c9k_A COBU, adenosylcobinamid 98.7 2.9E-08 1E-12 78.5 6.6 130 63-208 1-140 (180)
74 3ozx_A RNAse L inhibitor; ATP 98.6 7.4E-08 2.5E-12 89.2 9.3 136 57-209 290-450 (538)
75 2pjz_A Hypothetical protein ST 98.6 8.1E-09 2.8E-13 87.1 2.2 45 50-100 21-65 (263)
76 2yl4_A ATP-binding cassette SU 98.6 1.6E-08 5.3E-13 95.1 3.9 143 49-208 359-545 (595)
77 4f4c_A Multidrug resistance pr 98.6 6.7E-09 2.3E-13 105.7 1.4 161 55-231 1099-1303(1321)
78 4f4c_A Multidrug resistance pr 98.6 1.8E-08 6.1E-13 102.6 4.5 157 50-223 434-632 (1321)
79 2cbz_A Multidrug resistance-as 98.6 1E-08 3.4E-13 85.3 2.2 47 49-99 20-66 (237)
80 2yhs_A FTSY, cell division pro 98.6 1E-07 3.5E-12 86.5 9.0 45 57-104 289-333 (503)
81 2b8t_A Thymidine kinase; deoxy 98.6 5.8E-07 2E-11 73.7 12.4 120 58-207 9-128 (223)
82 3ec2_A DNA replication protein 98.6 1.2E-07 4.2E-12 75.0 7.5 42 57-100 34-76 (180)
83 3j16_B RLI1P; ribosome recycli 98.6 3.6E-07 1.2E-11 85.7 11.8 136 56-209 373-532 (608)
84 2kjq_A DNAA-related protein; s 98.5 3.3E-07 1.1E-11 70.4 9.0 40 60-102 35-75 (149)
85 3e70_C DPA, signal recognition 98.5 1.7E-07 5.9E-12 81.4 8.0 41 59-102 127-167 (328)
86 3bk7_A ABC transporter ATP-bin 98.5 5.5E-07 1.9E-11 84.5 11.3 135 58-209 379-536 (607)
87 3jvv_A Twitching mobility prot 98.5 1.1E-06 3.8E-11 77.2 12.3 114 58-209 120-235 (356)
88 1yqt_A RNAse L inhibitor; ATP- 98.5 8.7E-07 3E-11 82.2 12.2 135 58-209 309-466 (538)
89 2eyu_A Twitching motility prot 98.5 2E-06 6.9E-11 72.3 13.2 47 48-100 15-62 (261)
90 3g5u_A MCG1178, multidrug resi 98.5 3.4E-08 1.2E-12 100.3 2.7 158 49-223 405-604 (1284)
91 1rj9_A FTSY, signal recognitio 98.5 6.2E-07 2.1E-11 77.1 9.5 41 60-103 101-141 (304)
92 1znw_A Guanylate kinase, GMP k 98.4 9.2E-07 3.2E-11 71.6 9.5 29 57-85 16-44 (207)
93 4b4t_J 26S protease regulatory 98.4 1.2E-06 4.1E-11 77.7 10.3 122 57-209 178-301 (405)
94 1yqt_A RNAse L inhibitor; ATP- 98.4 3.4E-07 1.2E-11 84.9 7.1 36 49-86 37-72 (538)
95 3b9q_A Chloroplast SRP recepto 98.4 1.1E-06 3.7E-11 75.5 9.2 45 58-105 97-141 (302)
96 3ozx_A RNAse L inhibitor; ATP 98.4 1.5E-07 5.3E-12 87.1 4.0 30 57-86 21-50 (538)
97 4b4t_M 26S protease regulatory 98.4 8.9E-07 3E-11 79.5 8.3 124 56-210 210-335 (434)
98 2og2_A Putative signal recogni 98.4 1.3E-06 4.5E-11 76.7 9.2 45 58-105 154-198 (359)
99 2pt7_A CAG-ALFA; ATPase, prote 98.3 1.6E-06 5.5E-11 75.4 9.1 111 57-207 167-277 (330)
100 4b4t_K 26S protease regulatory 98.3 1E-06 3.5E-11 79.0 8.1 122 57-209 202-325 (428)
101 3g5u_A MCG1178, multidrug resi 98.3 1.2E-07 4.2E-12 96.3 2.1 141 50-210 1049-1204(1284)
102 4b4t_L 26S protease subunit RP 98.3 2.6E-06 8.8E-11 76.6 10.4 124 56-210 210-335 (437)
103 3bk7_A ABC transporter ATP-bin 98.3 3.1E-07 1.1E-11 86.2 4.5 36 49-86 107-142 (607)
104 3j16_B RLI1P; ribosome recycli 98.3 7.1E-07 2.4E-11 83.7 6.3 30 57-86 99-128 (608)
105 4b4t_I 26S protease regulatory 98.3 3.1E-06 1.1E-10 75.4 10.1 124 56-210 211-336 (437)
106 1fnn_A CDC6P, cell division co 98.3 8.6E-06 2.9E-10 71.8 12.2 120 63-205 46-169 (389)
107 4b4t_H 26S protease regulatory 98.2 2.4E-06 8.3E-11 76.8 8.0 122 57-209 239-362 (467)
108 3ux8_A Excinuclease ABC, A sub 98.2 3.3E-06 1.1E-10 80.4 9.2 29 49-78 33-61 (670)
109 1vma_A Cell division protein F 98.2 7.6E-06 2.6E-10 70.3 10.4 42 58-101 101-142 (306)
110 2obl_A ESCN; ATPase, hydrolase 98.2 2.5E-06 8.5E-11 74.7 7.3 58 39-101 51-108 (347)
111 3h4m_A Proteasome-activating n 98.2 8.6E-06 2.9E-10 68.9 10.5 122 57-209 47-170 (285)
112 1xwi_A SKD1 protein; VPS4B, AA 98.2 1.7E-05 6E-10 68.6 12.3 119 55-204 39-158 (322)
113 2dpy_A FLII, flagellum-specifi 98.2 3.1E-06 1.1E-10 76.4 7.5 57 40-101 138-194 (438)
114 2pze_A Cystic fibrosis transme 98.2 8.9E-07 3E-11 73.0 3.4 46 49-98 23-68 (229)
115 3thx_B DNA mismatch repair pro 98.1 7.7E-06 2.6E-10 79.9 9.6 29 57-85 669-697 (918)
116 2qby_A CDC6 homolog 1, cell di 98.1 5.2E-06 1.8E-10 73.0 7.8 129 59-205 43-173 (386)
117 3ux8_A Excinuclease ABC, A sub 98.1 6.9E-06 2.3E-10 78.2 8.8 47 151-209 564-610 (670)
118 1sxj_E Activator 1 40 kDa subu 98.1 2E-05 6.9E-10 68.7 11.1 35 64-100 39-73 (354)
119 2ewv_A Twitching motility prot 98.1 9.2E-06 3.1E-10 71.8 8.9 40 58-99 133-173 (372)
120 1j8m_F SRP54, signal recogniti 98.1 5.3E-06 1.8E-10 71.0 6.9 58 43-102 73-137 (297)
121 3cf0_A Transitional endoplasmi 98.1 6.7E-06 2.3E-10 70.5 7.1 121 57-208 45-167 (301)
122 1htw_A HI0065; nucleotide-bind 98.1 1.9E-06 6.4E-11 66.8 3.2 29 57-85 29-57 (158)
123 2iw3_A Elongation factor 3A; a 98.1 9.7E-06 3.3E-10 79.4 8.9 42 55-99 693-734 (986)
124 1lw7_A Transcriptional regulat 98.1 1.4E-06 4.8E-11 76.9 2.6 145 54-205 161-329 (365)
125 2orw_A Thymidine kinase; TMTK, 98.0 2.7E-05 9.1E-10 61.8 9.5 39 60-100 2-40 (184)
126 4aby_A DNA repair protein RECN 98.0 5.6E-06 1.9E-10 74.1 6.1 38 46-85 47-84 (415)
127 1zp6_A Hypothetical protein AT 98.0 3.8E-06 1.3E-10 66.7 4.3 39 57-100 5-43 (191)
128 2v1u_A Cell division control p 98.0 4.2E-05 1.4E-09 67.2 11.4 97 59-164 42-143 (387)
129 3bos_A Putative DNA replicatio 98.0 1.6E-05 5.6E-10 65.0 8.2 40 60-101 51-90 (242)
130 1lv7_A FTSH; alpha/beta domain 98.0 4.9E-05 1.7E-09 63.3 11.1 113 63-206 47-161 (257)
131 1wb9_A DNA mismatch repair pro 98.0 5E-05 1.7E-09 73.4 12.6 28 59-86 605-632 (800)
132 2ce7_A Cell division protein F 98.0 1.6E-05 5.4E-10 72.4 8.6 120 57-209 47-168 (476)
133 3cf2_A TER ATPase, transitiona 98.0 2.3E-05 8E-10 75.4 9.9 122 56-209 233-354 (806)
134 3t15_A Ribulose bisphosphate c 98.0 9.7E-06 3.3E-10 69.3 6.5 38 57-99 32-69 (293)
135 3thx_A DNA mismatch repair pro 98.0 2.7E-05 9.2E-10 76.3 10.1 29 57-85 658-686 (934)
136 2bbs_A Cystic fibrosis transme 98.0 2.1E-06 7.2E-11 73.3 1.9 44 50-97 54-97 (290)
137 2o8b_B DNA mismatch repair pro 98.0 6.1E-05 2.1E-09 74.7 12.5 50 149-208 866-915 (1022)
138 3kl4_A SRP54, signal recogniti 98.0 5.1E-05 1.7E-09 68.1 10.9 92 60-162 96-190 (433)
139 2iw3_A Elongation factor 3A; a 97.9 1.6E-05 5.6E-10 77.8 8.1 29 55-83 455-483 (986)
140 1zu4_A FTSY; GTPase, signal re 97.9 2.5E-05 8.4E-10 67.6 8.1 97 58-163 102-203 (320)
141 2qp9_X Vacuolar protein sortin 97.9 4.9E-05 1.7E-09 66.7 9.6 30 56-85 79-108 (355)
142 2z4s_A Chromosomal replication 97.9 6.3E-05 2.2E-09 67.9 10.5 107 61-204 130-236 (440)
143 2zan_A Vacuolar protein sortin 97.9 3.2E-05 1.1E-09 70.0 8.5 42 56-101 162-203 (444)
144 1z6g_A Guanylate kinase; struc 97.9 6.3E-06 2.1E-10 67.3 3.5 35 50-85 13-47 (218)
145 1l8q_A Chromosomal replication 97.9 0.00011 3.9E-09 63.3 11.6 41 59-101 35-75 (324)
146 2px0_A Flagellar biosynthesis 97.9 0.00011 3.6E-09 62.9 11.2 136 6-161 48-192 (296)
147 2x8a_A Nuclear valosin-contain 97.9 6E-05 2E-09 63.7 9.2 39 57-102 42-80 (274)
148 2qz4_A Paraplegin; AAA+, SPG7, 97.8 0.00012 4.1E-09 60.8 10.8 40 57-101 35-74 (262)
149 3ice_A Transcription terminati 97.8 6.2E-05 2.1E-09 66.2 9.1 69 41-113 156-224 (422)
150 3tr0_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 64.7 4.0 28 58-85 4-31 (205)
151 1jbk_A CLPB protein; beta barr 97.8 1.4E-05 4.8E-10 62.8 4.5 27 60-86 42-68 (195)
152 2chg_A Replication factor C sm 97.8 0.00031 1.1E-08 56.2 12.7 23 64-86 41-63 (226)
153 3eie_A Vacuolar protein sortin 97.8 5.4E-05 1.9E-09 65.4 8.5 39 56-99 46-84 (322)
154 1kgd_A CASK, peripheral plasma 97.8 1.2E-05 4.2E-10 63.4 3.9 29 57-85 1-29 (180)
155 3b9p_A CG5977-PA, isoform A; A 97.8 0.00021 7.2E-09 60.7 12.0 38 59-101 52-89 (297)
156 1ewq_A DNA mismatch repair pro 97.8 9.5E-05 3.3E-09 71.1 10.7 26 61-86 576-601 (765)
157 2v9p_A Replication protein E1; 97.8 1.1E-05 3.8E-10 69.2 3.8 36 49-85 115-150 (305)
158 1s96_A Guanylate kinase, GMP k 97.8 1.5E-05 5E-10 65.2 3.9 29 57-85 12-40 (219)
159 2dhr_A FTSH; AAA+ protein, hex 97.8 0.00013 4.3E-09 66.9 10.4 38 57-101 62-99 (499)
160 1ixz_A ATP-dependent metallopr 97.8 6.1E-05 2.1E-09 62.6 7.8 43 50-100 41-83 (254)
161 4eun_A Thermoresistant glucoki 97.8 1.8E-05 6.3E-10 63.4 4.4 38 59-103 27-64 (200)
162 2w58_A DNAI, primosome compone 97.8 0.00015 5.3E-09 57.8 9.9 37 62-100 55-91 (202)
163 3c8u_A Fructokinase; YP_612366 97.8 1.4E-05 4.9E-10 64.5 3.6 29 58-86 19-47 (208)
164 3te6_A Regulatory protein SIR3 97.8 0.00032 1.1E-08 60.4 12.2 96 60-164 44-145 (318)
165 3dm5_A SRP54, signal recogniti 97.8 0.00012 4.2E-09 65.7 9.8 92 60-163 99-194 (443)
166 2jeo_A Uridine-cytidine kinase 97.8 1.7E-05 5.7E-10 65.9 4.0 37 48-85 13-49 (245)
167 1lvg_A Guanylate kinase, GMP k 97.7 1.7E-05 5.7E-10 63.7 3.3 27 59-85 2-28 (198)
168 2gza_A Type IV secretion syste 97.7 1.8E-05 6.3E-10 69.6 3.8 41 57-100 171-211 (361)
169 1w4r_A Thymidine kinase; type 97.7 0.00018 6E-09 57.3 9.0 111 59-207 18-129 (195)
170 3b85_A Phosphate starvation-in 97.7 1.1E-05 3.9E-10 65.3 2.1 27 58-84 19-45 (208)
171 2vf7_A UVRA2, excinuclease ABC 97.7 5.2E-05 1.8E-09 73.4 6.9 47 151-209 751-797 (842)
172 1ypw_A Transitional endoplasmi 97.7 7.1E-05 2.4E-09 72.7 7.8 121 57-209 234-354 (806)
173 1sxj_A Activator 1 95 kDa subu 97.7 0.00016 5.5E-09 66.6 9.7 114 59-204 75-188 (516)
174 2p65_A Hypothetical protein PF 97.7 6.4E-05 2.2E-09 58.7 6.1 27 60-86 42-68 (187)
175 2j41_A Guanylate kinase; GMP, 97.7 2.4E-05 8.2E-10 62.7 3.6 28 58-85 3-30 (207)
176 3hu3_A Transitional endoplasmi 97.7 0.00011 3.9E-09 67.1 8.3 119 57-207 234-352 (489)
177 1sky_E F1-ATPase, F1-ATP synth 97.6 0.0001 3.5E-09 66.6 7.6 48 37-86 129-176 (473)
178 1ls1_A Signal recognition part 97.6 8.8E-05 3E-09 63.4 6.8 40 60-101 97-136 (295)
179 2ffh_A Protein (FFH); SRP54, s 97.6 0.00037 1.3E-08 62.4 11.1 90 60-163 97-192 (425)
180 3vfd_A Spastin; ATPase, microt 97.6 0.00044 1.5E-08 61.2 11.4 118 59-208 146-265 (389)
181 3pih_A Uvrabc system protein A 97.6 0.0004 1.4E-08 67.9 11.8 48 151-210 826-873 (916)
182 2npi_A Protein CLP1; CLP1-PCF1 97.6 1.8E-05 6E-10 71.9 2.2 40 57-99 134-175 (460)
183 3asz_A Uridine kinase; cytidin 97.6 3.3E-05 1.1E-09 62.3 3.7 37 59-100 4-40 (211)
184 2r8r_A Sensor protein; KDPD, P 97.6 0.0012 4.3E-08 53.7 12.9 44 60-106 4-49 (228)
185 3uie_A Adenylyl-sulfate kinase 97.6 4.2E-05 1.4E-09 61.3 4.0 40 58-100 22-62 (200)
186 3aez_A Pantothenate kinase; tr 97.6 4E-05 1.4E-09 66.0 4.0 43 58-102 87-131 (312)
187 3lnc_A Guanylate kinase, GMP k 97.6 2.3E-05 7.9E-10 64.3 2.2 29 57-85 23-52 (231)
188 3cf2_A TER ATPase, transitiona 97.6 0.00014 4.7E-09 70.2 7.7 117 56-203 506-624 (806)
189 1knq_A Gluconate kinase; ALFA/ 97.6 5.5E-05 1.9E-09 59.0 4.2 38 59-103 6-43 (175)
190 1njg_A DNA polymerase III subu 97.6 0.00025 8.5E-09 57.6 8.3 25 62-86 46-70 (250)
191 3tau_A Guanylate kinase, GMP k 97.6 4.4E-05 1.5E-09 61.7 3.6 27 59-85 6-32 (208)
192 2qen_A Walker-type ATPase; unk 97.5 0.00056 1.9E-08 59.0 10.8 34 61-101 31-64 (350)
193 3d8b_A Fidgetin-like protein 1 97.5 0.00039 1.3E-08 60.9 9.5 38 59-101 115-152 (357)
194 1sq5_A Pantothenate kinase; P- 97.5 9.1E-05 3.1E-09 63.6 5.3 42 59-100 78-119 (308)
195 3a00_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 60.2 3.3 25 61-85 1-25 (186)
196 3vaa_A Shikimate kinase, SK; s 97.5 6.8E-05 2.3E-09 60.0 4.0 30 56-85 20-49 (199)
197 1sxj_C Activator 1 40 kDa subu 97.5 0.0006 2.1E-08 59.1 10.3 29 58-86 41-71 (340)
198 2ius_A DNA translocase FTSK; n 97.5 0.00016 5.4E-09 66.2 6.8 43 58-100 164-208 (512)
199 1p9r_A General secretion pathw 97.5 0.00012 4.2E-09 65.5 6.0 39 59-99 165-203 (418)
200 1w5s_A Origin recognition comp 97.5 0.00032 1.1E-08 62.2 8.7 96 60-164 49-151 (412)
201 1rz3_A Hypothetical protein rb 97.5 0.00012 4.2E-09 58.6 5.4 40 58-100 19-59 (201)
202 2qby_B CDC6 homolog 3, cell di 97.5 0.00014 4.7E-09 64.0 6.1 94 61-164 45-146 (384)
203 3u61_B DNA polymerase accessor 97.5 0.0014 4.8E-08 56.3 12.3 35 62-101 49-83 (324)
204 1xx6_A Thymidine kinase; NESG, 97.5 0.00057 1.9E-08 54.4 8.9 38 59-98 6-43 (191)
205 3syl_A Protein CBBX; photosynt 97.5 0.00094 3.2E-08 56.9 10.9 42 59-100 65-108 (309)
206 4fcw_A Chaperone protein CLPB; 97.4 0.00065 2.2E-08 57.9 9.8 41 60-102 46-86 (311)
207 2qm8_A GTPase/ATPase; G protei 97.4 7.7E-05 2.6E-09 65.0 3.8 48 49-100 44-91 (337)
208 2j9r_A Thymidine kinase; TK1, 97.4 0.00036 1.2E-08 56.4 7.2 39 59-99 26-64 (214)
209 2oap_1 GSPE-2, type II secreti 97.4 8.4E-05 2.9E-09 68.3 3.8 41 58-101 257-297 (511)
210 3euj_A Chromosome partition pr 97.4 6.1E-05 2.1E-09 68.5 2.8 50 47-101 17-66 (483)
211 1kag_A SKI, shikimate kinase I 97.4 9.4E-05 3.2E-09 57.5 3.5 34 60-100 3-36 (173)
212 2rhm_A Putative kinase; P-loop 97.4 0.00011 3.8E-09 58.1 4.0 29 57-85 1-29 (193)
213 2bdt_A BH3686; alpha-beta prot 97.4 8.2E-05 2.8E-09 58.9 3.1 34 61-100 2-35 (189)
214 3n70_A Transport activator; si 97.4 0.00041 1.4E-08 52.5 6.8 26 60-85 23-48 (145)
215 2pez_A Bifunctional 3'-phospho 97.4 0.00012 4E-09 57.5 3.8 39 59-100 3-42 (179)
216 2i3b_A HCR-ntpase, human cance 97.4 0.0001 3.5E-09 58.7 3.4 25 61-85 1-25 (189)
217 2ck3_D ATP synthase subunit be 97.4 0.00059 2E-08 61.6 8.5 47 38-86 132-178 (482)
218 2yvu_A Probable adenylyl-sulfa 97.3 0.00014 4.9E-09 57.3 4.1 48 49-100 3-50 (186)
219 3sop_A Neuronal-specific septi 97.3 0.00011 3.8E-09 61.9 3.5 35 63-100 4-38 (270)
220 1ye8_A Protein THEP1, hypothet 97.3 0.00013 4.6E-09 57.4 3.6 24 63-86 2-25 (178)
221 2www_A Methylmalonic aciduria 97.3 0.00042 1.4E-08 60.6 7.1 28 59-86 72-99 (349)
222 1ypw_A Transitional endoplasmi 97.3 2E-05 6.7E-10 76.5 -1.5 123 56-209 506-630 (806)
223 3ney_A 55 kDa erythrocyte memb 97.3 0.00015 5.1E-09 58.1 3.9 27 59-85 17-43 (197)
224 2qor_A Guanylate kinase; phosp 97.3 0.00014 4.7E-09 58.5 3.6 28 58-85 9-36 (204)
225 2qgz_A Helicase loader, putati 97.3 0.00036 1.2E-08 59.9 6.4 38 61-100 152-190 (308)
226 2qt1_A Nicotinamide riboside k 97.3 0.00015 5.2E-09 58.2 3.5 40 57-102 17-56 (207)
227 3kta_A Chromosome segregation 97.3 0.00018 6.3E-09 56.4 3.9 28 57-85 23-50 (182)
228 1sxj_B Activator 1 37 kDa subu 97.3 0.0009 3.1E-08 57.1 8.6 23 64-86 45-67 (323)
229 2r9v_A ATP synthase subunit al 97.2 0.0011 3.8E-08 60.1 9.0 60 37-101 153-213 (515)
230 1svm_A Large T antigen; AAA+ f 97.2 0.0002 6.9E-09 63.2 4.1 30 56-85 164-193 (377)
231 2fna_A Conserved hypothetical 97.2 0.0075 2.6E-07 51.9 14.1 45 49-101 21-65 (357)
232 2qe7_A ATP synthase subunit al 97.2 0.0019 6.4E-08 58.6 10.4 60 37-101 140-200 (502)
233 2a5y_B CED-4; apoptosis; HET: 97.2 0.0028 9.6E-08 58.7 11.6 120 60-205 151-275 (549)
234 2c9o_A RUVB-like 1; hexameric 97.2 0.00057 1.9E-08 61.9 6.7 84 56-166 58-141 (456)
235 4e22_A Cytidylate kinase; P-lo 97.2 0.00022 7.7E-09 59.3 3.7 27 59-85 25-51 (252)
236 2orv_A Thymidine kinase; TP4A 97.2 0.0033 1.1E-07 51.3 10.4 109 60-206 18-127 (234)
237 1fx0_B ATP synthase beta chain 97.2 0.0034 1.2E-07 56.9 11.5 48 37-86 143-190 (498)
238 2f1r_A Molybdopterin-guanine d 97.2 0.00012 4.1E-09 57.3 1.8 37 62-101 3-42 (171)
239 3tqc_A Pantothenate kinase; bi 97.2 0.00039 1.3E-08 60.0 5.1 39 63-101 94-132 (321)
240 2bbw_A Adenylate kinase 4, AK4 97.2 0.00023 7.8E-09 58.9 3.6 26 60-85 26-51 (246)
241 4a8j_A Elongator complex prote 97.2 0.00017 5.7E-09 62.7 2.7 94 133-237 199-294 (361)
242 3vr4_A V-type sodium ATPase ca 97.1 0.0048 1.6E-07 56.8 12.3 71 38-116 211-281 (600)
243 3cr8_A Sulfate adenylyltranfer 97.1 0.00025 8.5E-09 65.7 3.9 41 57-100 365-407 (552)
244 3cm0_A Adenylate kinase; ATP-b 97.1 0.00027 9.2E-09 55.5 3.5 27 59-85 2-28 (186)
245 1qhx_A CPT, protein (chloramph 97.1 0.00032 1.1E-08 54.7 3.9 25 61-85 3-27 (178)
246 2c61_A A-type ATP synthase non 97.1 0.00086 2.9E-08 60.4 7.0 46 39-86 132-177 (469)
247 2vp4_A Deoxynucleoside kinase; 97.1 0.00018 6.3E-09 58.9 2.5 28 57-84 16-43 (230)
248 3oaa_A ATP synthase subunit al 97.1 0.0021 7.2E-08 58.2 9.5 62 36-101 139-200 (513)
249 2qag_B Septin-6, protein NEDD5 97.1 0.00023 7.7E-09 63.7 3.1 35 50-85 30-66 (427)
250 2xxa_A Signal recognition part 97.1 0.0051 1.8E-07 55.2 11.9 41 60-102 99-140 (433)
251 1b22_A DNA repair protein RAD5 97.1 0.00016 5.6E-09 52.3 1.8 52 4-55 58-114 (114)
252 3sr0_A Adenylate kinase; phosp 97.1 0.00024 8.3E-09 57.3 3.0 33 63-102 2-34 (206)
253 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00077 2.6E-08 54.5 5.8 112 58-203 25-136 (219)
254 2j37_W Signal recognition part 97.1 0.0014 4.7E-08 60.0 8.1 51 49-101 82-139 (504)
255 3l0o_A Transcription terminati 97.1 0.00065 2.2E-08 59.7 5.6 64 35-100 151-214 (427)
256 3pvs_A Replication-associated 97.1 0.002 6.8E-08 58.2 9.1 24 62-85 51-74 (447)
257 2ck3_A ATP synthase subunit al 97.1 0.003 1E-07 57.4 10.1 47 37-85 140-186 (510)
258 3llm_A ATP-dependent RNA helic 97.1 0.0042 1.4E-07 50.8 10.3 43 58-100 73-118 (235)
259 1gvn_B Zeta; postsegregational 97.1 0.00046 1.6E-08 58.6 4.6 36 59-99 31-66 (287)
260 2rcn_A Probable GTPase ENGC; Y 97.1 0.00072 2.5E-08 59.1 5.8 36 45-85 204-239 (358)
261 1m7g_A Adenylylsulfate kinase; 97.0 0.00043 1.5E-08 55.8 4.1 40 57-99 21-62 (211)
262 1cke_A CK, MSSA, protein (cyti 97.0 0.00044 1.5E-08 56.1 4.1 25 61-85 5-29 (227)
263 3kb2_A SPBC2 prophage-derived 97.0 0.0004 1.4E-08 53.6 3.7 23 63-85 3-25 (173)
264 1tue_A Replication protein E1; 97.0 0.00036 1.2E-08 56.0 3.4 38 47-85 45-82 (212)
265 1iqp_A RFCS; clamp loader, ext 97.0 0.00099 3.4E-08 56.9 6.4 23 64-86 49-71 (327)
266 1kht_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 54.3 3.8 25 61-85 3-27 (192)
267 1iy2_A ATP-dependent metallopr 97.0 0.0005 1.7E-08 57.9 4.3 37 57-100 71-107 (278)
268 1fx0_A ATP synthase alpha chai 97.0 0.0021 7.3E-08 58.3 8.5 73 37-115 141-213 (507)
269 3mfy_A V-type ATP synthase alp 97.0 0.0038 1.3E-07 57.2 10.2 70 38-115 206-275 (588)
270 1g5t_A COB(I)alamin adenosyltr 97.0 0.0032 1.1E-07 50.1 8.6 129 60-205 27-163 (196)
271 2yv5_A YJEQ protein; hydrolase 97.0 0.00031 1E-08 60.2 2.8 35 45-85 154-188 (302)
272 1tq4_A IIGP1, interferon-induc 97.0 0.00012 4E-09 65.4 0.2 23 63-85 71-93 (413)
273 1odf_A YGR205W, hypothetical 3 97.0 0.00048 1.6E-08 58.6 3.9 29 58-86 28-56 (290)
274 1a5t_A Delta prime, HOLB; zinc 97.0 0.0045 1.5E-07 53.5 10.2 25 62-86 25-49 (334)
275 3t61_A Gluconokinase; PSI-biol 97.0 0.0005 1.7E-08 54.9 3.7 36 61-103 18-53 (202)
276 1u0l_A Probable GTPase ENGC; p 97.0 0.00035 1.2E-08 59.7 2.9 37 58-97 166-202 (301)
277 1ly1_A Polynucleotide kinase; 96.9 0.00046 1.6E-08 53.7 3.3 32 62-99 3-34 (181)
278 1y63_A LMAJ004144AAA protein; 96.9 0.00067 2.3E-08 53.4 4.2 27 58-84 7-33 (184)
279 2gno_A DNA polymerase III, gam 96.9 0.0052 1.8E-07 52.5 10.0 24 61-84 18-41 (305)
280 3nwj_A ATSK2; P loop, shikimat 96.9 0.00036 1.2E-08 58.0 2.6 39 47-86 32-73 (250)
281 1qvr_A CLPB protein; coiled co 96.9 0.0019 6.6E-08 63.1 8.0 111 61-203 191-307 (854)
282 2plr_A DTMP kinase, probable t 96.9 0.00062 2.1E-08 54.5 3.8 27 60-86 3-29 (213)
283 1jr3_A DNA polymerase III subu 96.9 0.0042 1.5E-07 54.1 9.5 25 62-86 39-63 (373)
284 3trf_A Shikimate kinase, SK; a 96.9 0.00068 2.3E-08 53.2 3.9 25 61-85 5-29 (185)
285 3lw7_A Adenylate kinase relate 96.9 0.00052 1.8E-08 52.9 3.1 19 63-81 3-21 (179)
286 2c95_A Adenylate kinase 1; tra 96.9 0.00062 2.1E-08 53.8 3.6 27 59-85 7-33 (196)
287 2ze6_A Isopentenyl transferase 96.9 0.00059 2E-08 56.8 3.6 24 62-85 2-25 (253)
288 3iij_A Coilin-interacting nucl 96.9 0.00067 2.3E-08 53.0 3.7 27 59-85 9-35 (180)
289 3pfi_A Holliday junction ATP-d 96.9 0.0055 1.9E-07 52.8 9.9 24 62-85 56-79 (338)
290 2wwf_A Thymidilate kinase, put 96.9 0.00087 3E-08 53.7 4.4 29 58-86 7-35 (212)
291 1t9h_A YLOQ, probable GTPase E 96.9 0.00018 6.2E-09 61.6 0.2 29 58-86 170-198 (307)
292 4eaq_A DTMP kinase, thymidylat 96.9 0.0012 4E-08 54.1 5.1 30 57-86 22-51 (229)
293 3vr4_D V-type sodium ATPase su 96.8 0.0023 7.9E-08 57.4 7.3 47 38-86 130-176 (465)
294 2iut_A DNA translocase FTSK; n 96.8 0.0011 3.7E-08 61.3 5.3 46 152-206 344-389 (574)
295 1tev_A UMP-CMP kinase; ploop, 96.8 0.00072 2.5E-08 53.2 3.7 25 61-85 3-27 (196)
296 2v54_A DTMP kinase, thymidylat 96.8 0.00077 2.6E-08 53.6 3.7 26 60-85 3-28 (204)
297 3umf_A Adenylate kinase; rossm 96.8 0.00091 3.1E-08 54.3 4.1 31 56-86 24-54 (217)
298 1in4_A RUVB, holliday junction 96.8 0.00072 2.4E-08 58.6 3.7 24 62-85 52-75 (334)
299 3gqb_B V-type ATP synthase bet 96.8 0.0026 8.8E-08 57.1 7.1 48 37-86 125-172 (464)
300 1nn5_A Similar to deoxythymidy 96.8 0.00089 3E-08 53.7 3.9 27 59-85 7-33 (215)
301 3uk6_A RUVB-like 2; hexameric 96.8 0.00097 3.3E-08 58.3 4.4 32 55-86 64-95 (368)
302 2chq_A Replication factor C sm 96.8 0.0033 1.1E-07 53.4 7.6 23 64-86 41-63 (319)
303 1jjv_A Dephospho-COA kinase; P 96.8 0.00077 2.6E-08 53.9 3.3 21 63-83 4-24 (206)
304 1qhl_A Protein (cell division 96.8 8.1E-05 2.8E-09 61.0 -2.6 37 62-101 28-64 (227)
305 1ojl_A Transcriptional regulat 96.8 0.0046 1.6E-07 52.8 8.3 42 59-102 23-64 (304)
306 2bwj_A Adenylate kinase 5; pho 96.8 0.00062 2.1E-08 53.9 2.7 27 59-85 10-36 (199)
307 1nks_A Adenylate kinase; therm 96.7 0.00087 3E-08 52.7 3.5 34 63-98 3-36 (194)
308 2p5t_B PEZT; postsegregational 96.7 0.00066 2.3E-08 56.4 2.9 38 59-101 30-67 (253)
309 2vli_A Antibiotic resistance p 96.7 0.0007 2.4E-08 52.9 2.9 26 60-85 4-29 (183)
310 1aky_A Adenylate kinase; ATP:A 96.7 0.0011 3.8E-08 53.6 4.0 26 60-85 3-28 (220)
311 1zd8_A GTP:AMP phosphotransfer 96.7 0.00098 3.4E-08 54.3 3.6 28 58-85 4-31 (227)
312 1z6t_A APAF-1, apoptotic prote 96.7 0.0011 3.9E-08 61.7 4.5 109 50-161 136-246 (591)
313 2if2_A Dephospho-COA kinase; a 96.7 0.00093 3.2E-08 53.3 3.2 21 63-83 3-23 (204)
314 4dzz_A Plasmid partitioning pr 96.7 0.006 2E-07 48.4 8.0 84 63-163 3-87 (206)
315 1via_A Shikimate kinase; struc 96.7 0.00097 3.3E-08 51.9 3.2 31 63-100 6-36 (175)
316 2cdn_A Adenylate kinase; phosp 96.7 0.0013 4.5E-08 52.3 4.1 26 60-85 19-44 (201)
317 2jaq_A Deoxyguanosine kinase; 96.7 0.0011 3.8E-08 52.6 3.6 23 63-85 2-24 (205)
318 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0011 3.7E-08 55.3 3.5 26 60-85 3-28 (260)
319 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0016 5.4E-08 49.6 3.8 24 62-85 24-47 (149)
320 1np6_A Molybdopterin-guanine d 96.6 0.0016 5.5E-08 51.0 4.0 28 59-86 4-31 (174)
321 2iyv_A Shikimate kinase, SK; t 96.6 0.0012 4.3E-08 51.6 3.3 24 62-85 3-26 (184)
322 3r20_A Cytidylate kinase; stru 96.6 0.0014 4.8E-08 53.8 3.6 34 61-101 9-42 (233)
323 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0013 4.6E-08 57.7 3.7 26 58-84 21-46 (365)
324 1pui_A ENGB, probable GTP-bind 96.6 0.00048 1.7E-08 55.0 0.8 35 48-85 16-50 (210)
325 3con_A GTPase NRAS; structural 96.6 0.015 5.3E-07 45.2 9.6 23 63-85 23-45 (190)
326 1u8z_A RAS-related protein RAL 96.5 0.014 4.8E-07 44.0 8.9 23 63-85 6-28 (168)
327 1zuh_A Shikimate kinase; alpha 96.5 0.0018 6.1E-08 49.9 3.7 25 61-85 7-31 (168)
328 1w1w_A Structural maintenance 96.5 0.0018 6.1E-08 58.2 4.2 29 58-86 23-51 (430)
329 1zak_A Adenylate kinase; ATP:A 96.5 0.0016 5.4E-08 52.8 3.5 26 60-85 4-29 (222)
330 2qmh_A HPR kinase/phosphorylas 96.5 0.0014 4.9E-08 52.3 3.1 26 60-85 33-58 (205)
331 2z0h_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 51.2 3.7 23 63-85 2-24 (197)
332 1u0j_A DNA replication protein 96.5 0.0025 8.6E-08 53.3 4.7 36 50-85 93-128 (267)
333 2v3c_C SRP54, signal recogniti 96.5 0.0014 4.7E-08 58.9 3.4 51 49-101 80-137 (432)
334 3fb4_A Adenylate kinase; psych 96.5 0.0017 5.8E-08 52.2 3.7 23 63-85 2-24 (216)
335 1nij_A Hypothetical protein YJ 96.5 0.00079 2.7E-08 58.0 1.7 24 62-85 5-28 (318)
336 1ukz_A Uridylate kinase; trans 96.5 0.0019 6.6E-08 51.4 3.8 25 61-85 15-39 (203)
337 1qf9_A UMP/CMP kinase, protein 96.5 0.0018 6E-08 50.9 3.5 25 61-85 6-30 (194)
338 3m6a_A ATP-dependent protease 96.5 0.0017 6E-08 60.1 3.9 26 60-85 107-132 (543)
339 2pbr_A DTMP kinase, thymidylat 96.5 0.0019 6.5E-08 50.8 3.7 23 63-85 2-24 (195)
340 1ex7_A Guanylate kinase; subst 96.5 0.0016 5.6E-08 51.5 3.2 24 62-85 2-25 (186)
341 1e6c_A Shikimate kinase; phosp 96.5 0.0017 5.6E-08 50.2 3.2 24 62-85 3-26 (173)
342 1q3t_A Cytidylate kinase; nucl 96.5 0.0022 7.4E-08 52.6 4.1 28 58-85 13-40 (236)
343 2p67_A LAO/AO transport system 96.4 0.0028 9.6E-08 55.1 4.9 41 58-100 53-93 (341)
344 3tlx_A Adenylate kinase 2; str 96.4 0.0022 7.4E-08 53.0 3.9 27 59-85 27-53 (243)
345 1gtv_A TMK, thymidylate kinase 96.4 0.00093 3.2E-08 53.6 1.6 24 63-86 2-25 (214)
346 3k1j_A LON protease, ATP-depen 96.4 0.0024 8.2E-08 59.9 4.7 42 57-100 56-97 (604)
347 3cio_A ETK, tyrosine-protein k 96.4 0.0068 2.3E-07 51.6 7.1 41 59-101 102-143 (299)
348 3dl0_A Adenylate kinase; phosp 96.4 0.002 6.7E-08 51.9 3.6 23 63-85 2-24 (216)
349 3gqb_A V-type ATP synthase alp 96.4 0.005 1.7E-07 56.4 6.4 69 38-114 200-268 (578)
350 2o5v_A DNA replication and rep 96.4 0.002 6.8E-08 56.4 3.7 26 57-83 23-48 (359)
351 1vht_A Dephospho-COA kinase; s 96.4 0.0021 7.2E-08 51.8 3.6 24 60-83 3-26 (218)
352 3d3q_A TRNA delta(2)-isopenten 96.4 0.0037 1.3E-07 54.1 5.3 24 62-85 8-31 (340)
353 3be4_A Adenylate kinase; malar 96.4 0.0023 7.9E-08 51.7 3.8 26 60-85 4-29 (217)
354 2r62_A Cell division protease 96.4 0.0011 3.7E-08 55.3 1.8 25 62-86 45-69 (268)
355 1kao_A RAP2A; GTP-binding prot 96.4 0.014 4.9E-07 43.9 8.1 23 63-85 5-27 (167)
356 1uf9_A TT1252 protein; P-loop, 96.4 0.0021 7.1E-08 51.0 3.4 32 61-100 8-39 (203)
357 3foz_A TRNA delta(2)-isopenten 96.4 0.0085 2.9E-07 51.2 7.2 25 61-85 10-34 (316)
358 3la6_A Tyrosine-protein kinase 96.3 0.024 8.3E-07 47.9 10.0 41 60-102 91-132 (286)
359 2pt5_A Shikimate kinase, SK; a 96.3 0.0026 8.9E-08 48.9 3.6 23 63-85 2-24 (168)
360 2xau_A PRE-mRNA-splicing facto 96.3 0.012 4E-07 56.9 8.8 28 58-85 106-133 (773)
361 1e69_A Chromosome segregation 96.3 0.002 6.8E-08 55.5 3.0 26 58-84 22-47 (322)
362 3a8t_A Adenylate isopentenyltr 96.3 0.0025 8.7E-08 55.1 3.6 27 59-85 38-64 (339)
363 2a9k_A RAS-related protein RAL 96.3 0.018 6E-07 44.5 8.3 23 63-85 20-42 (187)
364 1uj2_A Uridine-cytidine kinase 96.3 0.0028 9.5E-08 52.5 3.7 41 62-102 23-66 (252)
365 1xjc_A MOBB protein homolog; s 96.2 0.0031 1.1E-07 49.0 3.6 25 62-86 5-29 (169)
366 3crm_A TRNA delta(2)-isopenten 96.2 0.0044 1.5E-07 53.3 4.9 24 62-85 6-29 (323)
367 1ak2_A Adenylate kinase isoenz 96.2 0.0035 1.2E-07 51.2 4.1 26 60-85 15-40 (233)
368 2xb4_A Adenylate kinase; ATP-b 96.2 0.0031 1E-07 51.2 3.6 23 63-85 2-24 (223)
369 4dsu_A GTPase KRAS, isoform 2B 96.2 0.012 4.2E-07 45.5 7.1 23 63-85 6-28 (189)
370 1d2n_A N-ethylmaleimide-sensit 96.2 0.0033 1.1E-07 52.5 3.9 28 58-85 61-88 (272)
371 1vt4_I APAF-1 related killer D 96.2 0.0079 2.7E-07 59.5 7.0 49 60-108 149-198 (1221)
372 3ake_A Cytidylate kinase; CMP 96.2 0.0032 1.1E-07 50.1 3.7 23 63-85 4-26 (208)
373 1oix_A RAS-related protein RAB 96.2 0.0026 8.9E-08 50.1 3.0 23 63-85 31-53 (191)
374 1sxj_D Activator 1 41 kDa subu 96.2 0.0046 1.6E-07 53.4 4.7 36 49-86 48-83 (353)
375 2f9l_A RAB11B, member RAS onco 96.2 0.003 1E-07 50.0 3.2 23 63-85 7-29 (199)
376 2grj_A Dephospho-COA kinase; T 96.1 0.0038 1.3E-07 49.6 3.6 27 59-85 10-36 (192)
377 1qvr_A CLPB protein; coiled co 96.1 0.011 3.8E-07 57.7 7.6 39 62-102 589-627 (854)
378 2bjv_A PSP operon transcriptio 96.1 0.006 2.1E-07 50.7 5.0 40 61-102 29-68 (265)
379 3qks_A DNA double-strand break 96.1 0.0043 1.5E-07 49.7 3.8 25 62-86 24-48 (203)
380 1e4v_A Adenylate kinase; trans 96.1 0.0039 1.3E-07 50.1 3.5 23 63-85 2-24 (214)
381 3sfz_A APAF-1, apoptotic pepti 96.0 0.0086 2.9E-07 60.4 6.7 98 59-162 145-247 (1249)
382 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0085 2.9E-07 52.9 6.0 41 58-100 32-72 (392)
383 2gj8_A MNME, tRNA modification 96.0 0.0035 1.2E-07 48.5 3.0 25 60-84 3-27 (172)
384 1ni3_A YCHF GTPase, YCHF GTP-b 96.0 0.0046 1.6E-07 54.7 4.1 30 55-84 14-43 (392)
385 1a7j_A Phosphoribulokinase; tr 96.0 0.0025 8.6E-08 54.1 2.3 42 60-103 4-45 (290)
386 2bov_A RAla, RAS-related prote 96.0 0.023 7.9E-07 44.7 7.9 23 63-85 16-38 (206)
387 3zvl_A Bifunctional polynucleo 96.0 0.0036 1.2E-07 56.0 3.4 27 59-85 256-282 (416)
388 1z06_A RAS-related protein RAB 96.0 0.031 1.1E-06 43.5 8.5 23 63-85 22-44 (189)
389 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0043 1.5E-07 54.0 3.7 29 58-86 19-49 (359)
390 3tqf_A HPR(Ser) kinase; transf 96.0 0.0043 1.5E-07 48.3 3.3 25 60-84 15-39 (181)
391 3exa_A TRNA delta(2)-isopenten 96.0 0.0042 1.5E-07 53.1 3.5 25 61-85 3-27 (322)
392 3v9p_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 50.8 3.3 31 56-86 20-50 (227)
393 3lv8_A DTMP kinase, thymidylat 96.0 0.005 1.7E-07 50.6 3.8 34 53-86 19-52 (236)
394 3hws_A ATP-dependent CLP prote 96.0 0.0044 1.5E-07 54.2 3.6 26 60-85 50-75 (363)
395 1ofh_A ATP-dependent HSL prote 95.9 0.0045 1.6E-07 52.4 3.6 36 61-101 50-85 (310)
396 2va8_A SSO2462, SKI2-type heli 95.9 0.035 1.2E-06 53.0 10.1 43 57-100 42-84 (715)
397 1ltq_A Polynucleotide kinase; 95.9 0.004 1.4E-07 52.7 3.3 23 62-84 3-25 (301)
398 2ygr_A Uvrabc system protein A 95.9 0.0023 8E-08 62.7 1.9 47 151-209 884-930 (993)
399 2f6r_A COA synthase, bifunctio 95.9 0.0045 1.6E-07 52.2 3.4 23 61-83 75-97 (281)
400 4edh_A DTMP kinase, thymidylat 95.9 0.006 2.1E-07 49.3 3.8 28 59-86 4-31 (213)
401 1qde_A EIF4A, translation init 95.9 0.048 1.6E-06 43.7 9.3 47 49-100 44-91 (224)
402 2bme_A RAB4A, RAS-related prot 95.9 0.051 1.8E-06 41.8 9.2 23 63-85 12-34 (186)
403 2r6f_A Excinuclease ABC subuni 95.8 0.0021 7.3E-08 62.8 0.8 46 151-208 866-911 (972)
404 2wji_A Ferrous iron transport 95.8 0.0055 1.9E-07 46.9 3.1 22 63-84 5-26 (165)
405 1hyq_A MIND, cell division inh 95.7 0.043 1.5E-06 45.2 8.8 37 63-101 4-41 (263)
406 3szr_A Interferon-induced GTP- 95.7 0.0017 5.8E-08 61.0 0.0 22 64-85 48-69 (608)
407 2p6r_A Afuhel308 helicase; pro 95.7 0.018 6.2E-07 54.8 7.2 128 60-204 39-181 (702)
408 3tkl_A RAS-related protein RAB 95.7 0.062 2.1E-06 41.8 9.2 23 63-85 18-40 (196)
409 2ocp_A DGK, deoxyguanosine kin 95.7 0.0067 2.3E-07 49.7 3.5 26 60-85 1-26 (241)
410 3p32_A Probable GTPase RV1496/ 95.7 0.013 4.3E-07 51.2 5.4 39 60-100 78-116 (355)
411 3qkt_A DNA double-strand break 95.7 0.0073 2.5E-07 52.3 3.8 24 62-85 24-47 (339)
412 1hqc_A RUVB; extended AAA-ATPa 95.7 0.014 4.7E-07 49.8 5.5 37 60-101 37-73 (324)
413 1yrb_A ATP(GTP)binding protein 95.7 0.017 5.8E-07 47.6 5.9 40 59-101 12-51 (262)
414 1um8_A ATP-dependent CLP prote 95.6 0.0069 2.4E-07 53.1 3.6 38 59-101 70-107 (376)
415 3tmk_A Thymidylate kinase; pho 95.6 0.0088 3E-07 48.4 3.9 28 59-86 3-30 (216)
416 1vec_A ATP-dependent RNA helic 95.6 0.064 2.2E-06 42.3 9.0 47 49-100 33-80 (206)
417 2zej_A Dardarin, leucine-rich 95.6 0.0055 1.9E-07 47.8 2.5 22 63-84 4-25 (184)
418 3eph_A TRNA isopentenyltransfe 95.6 0.0078 2.7E-07 53.3 3.6 25 61-85 2-26 (409)
419 4tmk_A Protein (thymidylate ki 95.5 0.0094 3.2E-07 48.1 3.8 27 60-86 2-28 (213)
420 3bor_A Human initiation factor 95.5 0.044 1.5E-06 44.6 7.9 40 61-100 67-107 (237)
421 3co5_A Putative two-component 95.5 0.0039 1.3E-07 46.8 1.4 24 61-84 27-50 (143)
422 3pey_A ATP-dependent RNA helic 95.5 0.18 6.1E-06 43.7 12.3 50 48-100 34-84 (395)
423 2zj8_A DNA helicase, putative 95.5 0.029 9.8E-07 53.6 7.6 129 57-204 35-178 (720)
424 3ld9_A DTMP kinase, thymidylat 95.5 0.011 3.7E-07 48.2 3.9 28 59-86 19-46 (223)
425 2dy1_A Elongation factor G; tr 95.5 0.034 1.2E-06 52.7 7.9 28 58-85 6-33 (665)
426 4hlc_A DTMP kinase, thymidylat 95.5 0.017 5.9E-07 46.2 5.1 26 61-86 2-27 (205)
427 3end_A Light-independent proto 95.5 0.014 4.8E-07 49.6 4.8 42 59-102 39-80 (307)
428 1g41_A Heat shock protein HSLU 95.5 0.011 3.9E-07 53.0 4.3 24 63-86 52-75 (444)
429 2r44_A Uncharacterized protein 95.4 0.0067 2.3E-07 52.1 2.7 26 60-85 45-70 (331)
430 1oft_A SULA, hypothetical prot 95.4 0.54 1.9E-05 35.8 12.9 135 40-201 22-158 (161)
431 2wjg_A FEOB, ferrous iron tran 95.4 0.0089 3.1E-07 46.4 3.1 23 62-84 8-30 (188)
432 2wsm_A Hydrogenase expression/ 95.4 0.021 7E-07 45.8 5.3 37 62-101 31-67 (221)
433 1ega_A Protein (GTP-binding pr 95.4 0.007 2.4E-07 51.6 2.5 25 60-84 7-31 (301)
434 1udx_A The GTP-binding protein 95.3 0.0047 1.6E-07 55.2 1.3 28 57-84 153-180 (416)
435 1z2a_A RAS-related protein RAB 95.3 0.011 3.6E-07 44.9 3.2 23 63-85 7-29 (168)
436 2r2a_A Uncharacterized protein 95.3 0.012 4.1E-07 47.0 3.6 24 62-85 6-29 (199)
437 2dyk_A GTP-binding protein; GT 95.3 0.011 3.8E-07 44.5 3.2 23 63-85 3-25 (161)
438 1p5z_B DCK, deoxycytidine kina 95.3 0.0053 1.8E-07 51.1 1.5 27 59-85 22-48 (263)
439 2gxq_A Heat resistant RNA depe 95.3 0.076 2.6E-06 41.8 8.3 47 49-100 31-81 (207)
440 3dkp_A Probable ATP-dependent 95.3 0.061 2.1E-06 43.8 7.9 40 61-100 66-107 (245)
441 2h92_A Cytidylate kinase; ross 95.2 0.012 4E-07 47.3 3.4 25 61-85 3-27 (219)
442 2ce2_X GTPase HRAS; signaling 95.2 0.011 3.8E-07 44.5 3.0 22 64-85 6-27 (166)
443 2pl3_A Probable ATP-dependent 95.2 0.1 3.5E-06 42.2 9.1 23 60-82 61-83 (236)
444 2ged_A SR-beta, signal recogni 95.2 0.012 4E-07 46.0 3.2 26 60-85 47-72 (193)
445 3ber_A Probable ATP-dependent 95.2 0.066 2.3E-06 44.0 7.9 41 60-100 79-120 (249)
446 2qnr_A Septin-2, protein NEDD5 95.2 0.0075 2.5E-07 51.4 2.1 21 64-84 21-41 (301)
447 1ek0_A Protein (GTP-binding pr 95.1 0.013 4.5E-07 44.3 3.2 22 64-85 6-27 (170)
448 2nzj_A GTP-binding protein REM 95.1 0.012 4.2E-07 44.9 3.0 22 63-84 6-27 (175)
449 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.013 4.5E-07 44.8 3.2 23 63-85 9-31 (177)
450 1g8p_A Magnesium-chelatase 38 95.1 0.0071 2.4E-07 52.2 1.8 23 63-85 47-69 (350)
451 1z08_A RAS-related protein RAB 95.1 0.014 4.6E-07 44.4 3.2 23 63-85 8-30 (170)
452 1z0j_A RAB-22, RAS-related pro 95.1 0.013 4.6E-07 44.3 3.2 23 63-85 8-30 (170)
453 1g16_A RAS-related protein SEC 95.1 0.013 4.3E-07 44.5 3.0 21 64-84 6-26 (170)
454 3fht_A ATP-dependent RNA helic 95.1 0.15 5.2E-06 44.5 10.5 48 49-99 55-103 (412)
455 1ky3_A GTP-binding protein YPT 95.1 0.014 4.7E-07 44.9 3.2 23 63-85 10-32 (182)
456 2erx_A GTP-binding protein DI- 95.0 0.013 4.5E-07 44.4 3.0 22 63-84 5-26 (172)
457 3q85_A GTP-binding protein REM 95.0 0.013 4.6E-07 44.4 3.1 20 64-83 5-24 (169)
458 2jlq_A Serine protease subunit 95.0 0.14 4.7E-06 46.1 10.1 94 59-163 17-122 (451)
459 2vf7_A UVRA2, excinuclease ABC 95.0 0.01 3.5E-07 57.5 2.7 45 153-209 401-445 (842)
460 1c1y_A RAS-related protein RAP 95.0 0.015 5.1E-07 43.9 3.2 22 64-85 6-27 (167)
461 2qag_C Septin-7; cell cycle, c 95.0 0.0096 3.3E-07 53.2 2.4 23 64-86 34-56 (418)
462 1cp2_A CP2, nitrogenase iron p 95.0 0.026 9E-07 46.8 4.9 38 63-102 3-40 (269)
463 3ly5_A ATP-dependent RNA helic 95.0 0.096 3.3E-06 43.3 8.3 22 61-82 91-112 (262)
464 1r2q_A RAS-related protein RAB 94.9 0.016 5.4E-07 43.9 3.2 23 63-85 8-30 (170)
465 2v6i_A RNA helicase; membrane, 94.9 0.16 5.3E-06 45.4 10.1 93 60-163 1-105 (431)
466 1hv8_A Putative ATP-dependent 94.9 0.17 5.9E-06 43.3 10.2 48 49-100 36-83 (367)
467 3gmt_A Adenylate kinase; ssgci 94.9 0.017 5.9E-07 47.1 3.4 24 63-86 10-33 (230)
468 1r8s_A ADP-ribosylation factor 94.9 0.018 6.1E-07 43.5 3.4 22 64-85 3-24 (164)
469 3qxc_A Dethiobiotin synthetase 94.9 0.34 1.2E-05 39.7 11.3 125 61-205 21-171 (242)
470 1upt_A ARL1, ADP-ribosylation 94.8 0.017 5.9E-07 43.8 3.2 26 60-85 6-31 (171)
471 1ko7_A HPR kinase/phosphatase; 94.8 0.017 5.8E-07 49.4 3.3 24 61-84 144-167 (314)
472 3auy_A DNA double-strand break 94.8 0.019 6.5E-07 50.3 3.8 22 62-83 26-47 (371)
473 3bc1_A RAS-related protein RAB 94.8 0.018 6E-07 44.7 3.2 23 63-85 13-35 (195)
474 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.012 4.2E-07 53.7 2.6 28 58-85 38-65 (500)
475 2fn4_A P23, RAS-related protei 94.8 0.017 5.7E-07 44.3 3.0 23 63-85 11-33 (181)
476 2hf9_A Probable hydrogenase ni 94.8 0.019 6.3E-07 46.2 3.4 25 62-86 39-63 (226)
477 3q72_A GTP-binding protein RAD 94.8 0.015 5.2E-07 44.0 2.7 20 64-83 5-24 (166)
478 2y8e_A RAB-protein 6, GH09086P 94.8 0.017 5.8E-07 44.2 3.0 23 63-85 16-38 (179)
479 3kjh_A CO dehydrogenase/acetyl 94.8 0.026 9E-07 45.9 4.3 37 64-102 3-39 (254)
480 2hxs_A RAB-26, RAS-related pro 94.8 0.017 5.9E-07 44.2 3.0 22 63-84 8-29 (178)
481 1nrj_B SR-beta, signal recogni 94.8 0.018 6.1E-07 46.0 3.2 23 63-85 14-36 (218)
482 3bfv_A CAPA1, CAPB2, membrane 94.8 0.039 1.3E-06 46.2 5.4 42 59-102 80-122 (271)
483 3fwy_A Light-independent proto 94.8 0.028 9.6E-07 48.2 4.6 43 57-101 44-86 (314)
484 3pxg_A Negative regulator of g 94.7 0.02 6.8E-07 51.9 3.8 27 60-86 200-226 (468)
485 1z0f_A RAB14, member RAS oncog 94.7 0.019 6.5E-07 43.9 3.2 23 63-85 17-39 (179)
486 2lkc_A Translation initiation 94.7 0.024 8.1E-07 43.4 3.7 26 60-85 7-32 (178)
487 1svi_A GTP-binding protein YSX 94.7 0.016 5.4E-07 45.3 2.8 23 62-84 24-46 (195)
488 3ihw_A Centg3; RAS, centaurin, 94.7 0.019 6.4E-07 44.8 3.2 23 63-85 22-44 (184)
489 2oil_A CATX-8, RAS-related pro 94.7 0.019 6.6E-07 44.8 3.2 23 63-85 27-49 (193)
490 4b3f_X DNA-binding protein smu 94.7 0.025 8.4E-07 53.5 4.5 29 58-86 202-230 (646)
491 3fmp_B ATP-dependent RNA helic 94.7 0.15 5.2E-06 45.9 9.6 41 60-100 130-171 (479)
492 3fmo_B ATP-dependent RNA helic 94.7 0.23 7.8E-06 42.0 10.1 39 61-100 131-171 (300)
493 3clv_A RAB5 protein, putative; 94.7 0.019 6.6E-07 44.8 3.2 23 63-85 9-31 (208)
494 2efe_B Small GTP-binding prote 94.7 0.02 6.8E-07 44.0 3.2 23 63-85 14-36 (181)
495 3fho_A ATP-dependent RNA helic 94.7 0.22 7.5E-06 45.4 10.6 50 49-101 149-199 (508)
496 3k53_A Ferrous iron transport 94.7 0.015 5.2E-07 48.5 2.6 23 63-85 5-27 (271)
497 3lxx_A GTPase IMAP family memb 94.7 0.017 5.8E-07 47.1 2.9 23 63-85 31-53 (239)
498 2cxx_A Probable GTP-binding pr 94.7 0.017 5.8E-07 44.8 2.8 22 64-85 4-25 (190)
499 2g6b_A RAS-related protein RAB 94.6 0.021 7.1E-07 43.8 3.2 23 63-85 12-34 (180)
500 1m2o_B GTP-binding protein SAR 94.6 0.019 6.6E-07 44.9 3.0 23 62-84 24-46 (190)
No 1
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.97 E-value=1e-30 Score=233.77 Aligned_cols=232 Identities=24% Similarity=0.358 Sum_probs=169.3
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCL 79 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~ 79 (279)
+.++..|+++.+++++.+.+.+.. +..+.+ ..+....+++||++.||++|+||+++|++++|+||||||||||++
T Consensus 117 ~L~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~~~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 117 DLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHHHHHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhccccCCCHHHHHhhhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 566889999999999999988873 222222 234457899999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCee
Q psy2198 80 QMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKVG 153 (279)
Q Consensus 80 ~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~~ 153 (279)
+++.....|.. .++++|+++++.++..++.++... .++..+ +.+++.+....+..+....+...... ...+++
T Consensus 197 ~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~-~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 275 (400)
T 3lda_A 197 TLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQR-FGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFS 275 (400)
T ss_dssp HHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH-TTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEE
T ss_pred HHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHH-cCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCc
Confidence 99988776542 345999999998888887776554 344433 56788888888776655554443322 345899
Q ss_pred EEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-----CCCccCccccchhhhhh
Q psy2198 154 MIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAHD 227 (279)
Q Consensus 154 lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~~ 227 (279)
++|||+++..++..+.+. ...++++.+.++++.|+++++++|++||+++|.+...+. ++...|.+|..|++.++
T Consensus 276 llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad 355 (400)
T 3lda_A 276 LIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSST 355 (400)
T ss_dssp EEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCS
T ss_pred eEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcc
Confidence 999999999987665532 223466667899999999999999999999999765543 24567889999999999
Q ss_pred hheeeecccc
Q psy2198 228 MRDLAHYLHE 237 (279)
Q Consensus 228 ~rl~l~k~~~ 237 (279)
.++++++.++
T Consensus 356 ~vl~L~~~~g 365 (400)
T 3lda_A 356 TRLGFKKGKG 365 (400)
T ss_dssp EEEEEEECST
T ss_pred eEEEEEecCC
Confidence 9999999765
No 2
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.97 E-value=3.5e-30 Score=225.50 Aligned_cols=232 Identities=26% Similarity=0.329 Sum_probs=177.8
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCL 79 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~ 79 (279)
+.++..|+++.+++++++.+.+.. +..+.+ .......+++||++.||.+|+||+++|++++|+|+||+|||+|++
T Consensus 37 ~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 37 ELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHHTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred HHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHhccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 456789999999999999988772 222222 223457899999999999999999999999999999999999999
Q ss_pred HHHHHhcccC---------CC-----CeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhh
Q psy2198 80 QMCLSLQVSQ---------PH-----KGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQ 144 (279)
Q Consensus 80 ~l~~~~~~~~---------~~-----~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~ 144 (279)
+++..++++. .. +.++|+++|+.++.+++.++... .++..+ +.+++++.++.+.+++...+..+
T Consensus 117 ~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~-~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l 195 (322)
T 2i1q_A 117 QSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH-AGIDGQTVLDNTFVARAYNSDMQMLFAEKI 195 (322)
T ss_dssp HHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH-HTCCHHHHHHTEEEEECSSHHHHHHHHHTH
T ss_pred HHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH-cCCCHHHHhcCEEEEeCCCHHHHHHHHHHH
Confidence 9999865442 22 45999999999888888877653 233322 44688888888887655544433
Q ss_pred hcc-CC-CCeeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccc
Q psy2198 145 SGF-IE-NKVGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALG 219 (279)
Q Consensus 145 ~~~-~~-~~~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g 219 (279)
... .. .++++||||+++.++...+.+. +...+...+.++++.|++++++++++||+++|+++..+. ++...|.+|
T Consensus 196 ~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~ 275 (322)
T 2i1q_A 196 EDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGG 275 (322)
T ss_dssp HHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSH
T ss_pred HHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCc
Confidence 322 33 6899999999999886544321 122355678999999999999999999999999987654 245688999
Q ss_pred cchhhhhhhheeeecccc
Q psy2198 220 LTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 220 ~~~~~~~~~rl~l~k~~~ 237 (279)
..|++.++.++++++.++
T Consensus 276 ~~~~~~~d~~i~l~~~~~ 293 (322)
T 2i1q_A 276 HIVGHAATFRFFVRKGKG 293 (322)
T ss_dssp HHHHHHCSEEEEEEECST
T ss_pred HHHHhcCcEEEEEEecCC
Confidence 999999999999998764
No 3
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.97 E-value=2.5e-30 Score=228.11 Aligned_cols=232 Identities=24% Similarity=0.332 Sum_probs=150.1
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCL 79 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~ 79 (279)
+.++..|+++.+++++.+.+.+.. +..+.+ .......+++||++.||.+|+||+++|++++|+|+||+|||+|++
T Consensus 61 ~l~~~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 61 ALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp -------------------------CCSEEHHHHHHHGGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhhhcccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 445778999999999999887762 222222 223457889999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CC--CC
Q psy2198 80 QMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IE--NK 151 (279)
Q Consensus 80 ~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~--~~ 151 (279)
+++..++.+.. .++++|+++|+.++.+++.++.... ++..+ +.+++.+..+.+.+++...+..+... .. .+
T Consensus 141 ~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~-g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~ 219 (343)
T 1v5w_A 141 TLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF-NVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGI 219 (343)
T ss_dssp HHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT-TCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc-CCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99998765432 3459999999988888888776543 33332 45788888887777665444332221 23 68
Q ss_pred eeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-----CCCccCccccchhhh
Q psy2198 152 VGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERA 225 (279)
Q Consensus 152 ~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~ 225 (279)
+++||||+++.++...+.+. +...+...+.++++.|++++++++++||+++|.++..+. ++..+|++|..|++.
T Consensus 220 ~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ 299 (343)
T 1v5w_A 220 FKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHA 299 (343)
T ss_dssp EEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTS
T ss_pred ccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHh
Confidence 99999999999987654422 222355568899999999999999999999999987654 245688999999999
Q ss_pred hhhheeeecccc
Q psy2198 226 HDMRDLAHYLHE 237 (279)
Q Consensus 226 ~~~rl~l~k~~~ 237 (279)
++.|+++++.++
T Consensus 300 ad~~l~l~r~~~ 311 (343)
T 1v5w_A 300 STTRISLRKGRG 311 (343)
T ss_dssp SSEEEEEEESST
T ss_pred CCEEEEEEEcCC
Confidence 999999998754
No 4
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.97 E-value=3.8e-30 Score=225.37 Aligned_cols=232 Identities=24% Similarity=0.319 Sum_probs=141.8
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCL 79 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~ 79 (279)
+.++..|+++.+++++.+.+.+.. +..+.+ .......+++||++.||.+|+||+++|++++|+|+||+|||+|++
T Consensus 46 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 46 DLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp --------------------------CCCCHHHHHHHHCSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhhhhccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 456789999999999999887762 222222 223457899999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC----CCeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CC-CCe
Q psy2198 80 QMCLSLQVSQP----HKGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IE-NKV 152 (279)
Q Consensus 80 ~l~~~~~~~~~----~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~-~~~ 152 (279)
+++..++.+.. .++++|+++|+.++.+++.++... .++..+ +.+++.+.++.+.+++...+..+... .. .++
T Consensus 126 ~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~-~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 204 (324)
T 2z43_A 126 QLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA-LGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSI 204 (324)
T ss_dssp HHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH-TTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH-hCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99998764321 345999999998888888877654 333332 45688888888877654444333222 33 689
Q ss_pred eEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhh
Q psy2198 153 GMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMR 229 (279)
Q Consensus 153 ~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~r 229 (279)
++||||+++.++...+.+. +...+...+.++++.|++++++++++||+++|.++..+. ++...|.+|..|++.++.+
T Consensus 205 ~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~ 284 (324)
T 2z43_A 205 KLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIR 284 (324)
T ss_dssp EEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEE
T ss_pred CEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEE
Confidence 9999999999886544321 122355678999999999999999999999999987654 2456899999999999999
Q ss_pred eeeecccc
Q psy2198 230 DLAHYLHE 237 (279)
Q Consensus 230 l~l~k~~~ 237 (279)
+++++.++
T Consensus 285 l~l~r~~~ 292 (324)
T 2z43_A 285 IQLKKSRG 292 (324)
T ss_dssp EEEEECST
T ss_pred EEEEEcCC
Confidence 99998764
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.96 E-value=4e-29 Score=220.70 Aligned_cols=232 Identities=24% Similarity=0.323 Sum_probs=167.7
Q ss_pred hhHhhcCccHHHHHHHHHHHhhcc----cccCCC--CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 5 DQMLKLGFQEWEVNKVKDLKKKKA----FQVGKN--PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 5 ~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
+.++..|+|+.+++++.+.+.+.. +..+.+ .......+++||++.||.+|+||+++|++++|+||||||||||+
T Consensus 69 ~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 69 ELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 556889999999999999988773 222222 22345789999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCC----CeEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CC---
Q psy2198 79 LQMCLSLQVSQPH----KGVLYICTESVFPTARLAQLCELSPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IE--- 149 (279)
Q Consensus 79 ~~l~~~~~~~~~~----~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~--- 149 (279)
+++++....++.. +.++|++++..+..+++..+.+. .++..+ +.+++.+....+.......+...... ..
T Consensus 149 ~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~-~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~ 227 (349)
T 1pzn_A 149 HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN-RGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLN 227 (349)
T ss_dssp HHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHT-TTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhcc
Confidence 9999988544333 34799999988777777776553 344333 67888887766654433333222111 22
Q ss_pred --CCeeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC--CCCccCccccchhh
Q psy2198 150 --NKVGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYER 224 (279)
Q Consensus 150 --~~~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~ 224 (279)
.+++++|||++++.++....+. ....+...+.++++.|++++++++++||+++|.....+. +....+.+|.+|++
T Consensus 228 G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 228 TDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp SSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCT
T ss_pred ccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEee
Confidence 6899999999999886554332 223355668889999999999999999999999876653 35678899999999
Q ss_pred hhhhheeeecccc
Q psy2198 225 AHDMRDLAHYLHE 237 (279)
Q Consensus 225 ~~~~rl~l~k~~~ 237 (279)
.++.|+++++.++
T Consensus 308 ~~~~rL~l~~~~~ 320 (349)
T 1pzn_A 308 SATLRVYLRKGKG 320 (349)
T ss_dssp TCSEEEEEEECTT
T ss_pred cCcEEEEEEEcCC
Confidence 9999999998664
No 6
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.95 E-value=8.7e-27 Score=204.84 Aligned_cols=219 Identities=21% Similarity=0.168 Sum_probs=165.0
Q ss_pred CceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 40 EIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
..+++||++.||++|+ ||+++|++++|+||||+|||||+++++..+. ...+.++|++++..++..+..++ ++
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rl-----gv 111 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNL-----GV 111 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHH-----TC
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHc-----CC
Confidence 7899999999999999 9999999999999999999999999999885 23344999999998877655544 22
Q ss_pred CccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchhh----HHHHHHHHHHHHHHHHHHH
Q psy2198 119 KPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKYV----QRAHDMRDLAHYLHELSIK 193 (279)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~~----~~~~~~~~l~~~L~~la~~ 193 (279)
..+++.+..+.+.+++...+.... ....++++|||+++.+++ ..+.+..+. ...+.+.++++.|++++++
T Consensus 112 ---~~~~l~i~~~~~~e~~l~~~~~l~--~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~ 186 (356)
T 3hr8_A 112 ---DLKSLLISQPDHGEQALEIVDELV--RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186 (356)
T ss_dssp ---CGGGCEEECCSSHHHHHHHHHHHH--HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred ---chhhhhhhhccCHHHHHHHHHHHh--hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 235677778888888887777654 345789999999999885 444432210 1345677888899999999
Q ss_pred cCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccc----ccc--ceeeEEEEeccccccccCCCCccc-c
Q psy2198 194 HRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLH----EIS--IKHWIVVICTNQVTSAMTHSDKNI-P 264 (279)
Q Consensus 194 ~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~----~~~--~~~~~~v~~~~~~~~~~~~~~~~~-~ 264 (279)
++++||+++|++...+. ++...+++|.+|++.++.|+++++.. +.. .....+-+..|.+...-......| -
T Consensus 187 ~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr~~~~~~~~~f~i~~ 266 (356)
T 3hr8_A 187 SKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVISVKIVKNKVAPPFKTAQTYIIY 266 (356)
T ss_dssp SSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCCEEEEEEET
T ss_pred cCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccccCCcccccEEEEEEEeCCCCCCCceEEEEEee
Confidence 99999999999766554 45667899999999999999999853 111 122345556666665555555555 3
Q ss_pred cccccc
Q psy2198 265 ALGLSW 270 (279)
Q Consensus 265 ~~~~~~ 270 (279)
.-|+.|
T Consensus 267 ~~Gi~~ 272 (356)
T 3hr8_A 267 GKGIDR 272 (356)
T ss_dssp TTBSCH
T ss_pred CCCcCh
Confidence 455554
No 7
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.95 E-value=4.3e-27 Score=201.23 Aligned_cols=189 Identities=18% Similarity=0.155 Sum_probs=131.5
Q ss_pred CCceeccCChhhhhhhC----CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 39 TEIVVSTGSEKFDSILK----GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~----gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
...+++||+++||.+|+ ||+++| +++|+||||+|||||+++++..++.....+.++|+++|+.++..+..++
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l--- 78 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM--- 78 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT---
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh---
Confidence 46789999999999999 999999 9999999999999999999998862112445999999999887664433
Q ss_pred CCCCCccccCcEEEEecCCHHHH-HHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchhh------HHHHHHHHHHHH
Q psy2198 115 SPLAKPKCSDKIFITHCYEFIDL-KRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKYV------QRAHDMRDLAHY 186 (279)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~l-~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~~------~~~~~~~~l~~~ 186 (279)
++. .+++.+..+.+.+++ ...+..+..+....+++|||||++++++ .++.+.... .+.+.+.+.++.
T Consensus 79 --Gvd---~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~Lrk 153 (333)
T 3io5_A 79 --GVD---PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRI 153 (333)
T ss_dssp --TCC---GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHH
T ss_pred --CCC---HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHH
Confidence 332 457888888898888 6665554222567899999999999984 444443211 244556666777
Q ss_pred HHHHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecccccc
Q psy2198 187 LHELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEIS 239 (279)
Q Consensus 187 L~~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~~ 239 (279)
|.++++++|+++|++||+++ .+. ++.. ..||.++ +.+..|++++|.....
T Consensus 154 L~~~ak~~~i~vi~tNQV~k-~G~~fg~p~-~~GG~~l-~~ss~Rl~lrk~~~ik 205 (333)
T 3io5_A 154 VTPYFSTKNIPCIAINHTYE-TQEMFSKTV-MGGGTGP-MYSADTVFIIGKRQIK 205 (333)
T ss_dssp HHHHHHHTTCEEEEEEEC-----------------CCG-GGGSSEEEEEEEC---
T ss_pred HHHHHHHhCCEEEEECCeee-cCcccCCCC-CCCccee-eeeeEEEEEEeccccc
Confidence 77789999999999999998 543 2333 4899999 9999999999876544
No 8
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.95 E-value=1.3e-26 Score=194.38 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=134.1
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ----PHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~----~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
...+++||++.||++|+||+++|++++|+||||+|||||+++++..++.++ ..++++|++++..++..++.++...
T Consensus 2 ~~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 81 (243)
T ss_dssp CCCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred CceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999865433 2567999999997777777666554
Q ss_pred CCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-CCCCeeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHHHHHHH
Q psy2198 115 SPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-IENKVGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELS 191 (279)
Q Consensus 115 ~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~la 191 (279)
. ++..+ +.+++.+....+..+....+..+... ...+++++|||+++..+...+++. +..++...+.++++.|++++
T Consensus 82 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~ 160 (243)
T 1n0w_A 82 Y-GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA 160 (243)
T ss_dssp T-TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 3 33322 44678887777776655443333221 346899999999999876544331 11223445788999999999
Q ss_pred HHcCcEEEEecccccccCC-----CCCccCccccchhhhhhhheeeecccc
Q psy2198 192 IKHRIVVICTNQVTSAMTH-----SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 192 ~~~~~~vi~v~h~~~~~~~-----~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
++++++||+++|..+..+. ++...+++|..|++.++.++++++.++
T Consensus 161 ~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~ 211 (243)
T 1n0w_A 161 DEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRG 211 (243)
T ss_dssp HHHCCEEEEEC-------------------------CCTTCEEEEEEECST
T ss_pred HHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcCC
Confidence 9999999999999887654 244678899999999999999998543
No 9
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.93 E-value=6e-25 Score=193.69 Aligned_cols=189 Identities=16% Similarity=0.163 Sum_probs=140.5
Q ss_pred CCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 36 IDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 36 ~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
......+++||++.||.+|+ ||+++|++++|+|+||+|||||+++++..+. ...+.++|+++|+.++..+..+
T Consensus 35 ~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~~a~~---- 108 (349)
T 2zr9_A 35 VRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPEYAKK---- 108 (349)
T ss_dssp CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHH----
T ss_pred ccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHHHHHH----
Confidence 45667899999999999999 9999999999999999999999999998886 2344599999998876643221
Q ss_pred CCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchhh----HHHHHHHHHHHHHHH
Q psy2198 115 SPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKYV----QRAHDMRDLAHYLHE 189 (279)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~~----~~~~~~~~l~~~L~~ 189 (279)
.++. .+++.+..+.+.+++.+.+..+. ...++++||||+++.++. .++.+..+. .+.+.+.+.++.|..
T Consensus 109 -lG~~---~~~l~i~~~~~~e~~l~~~~~l~--~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~ 182 (349)
T 2zr9_A 109 -LGVD---TDSLLVSQPDTGEQALEIADMLV--RSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 182 (349)
T ss_dssp -TTCC---GGGCEEECCSSHHHHHHHHHHHH--TTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHH
T ss_pred -cCCC---HHHeEEecCCCHHHHHHHHHHHH--hcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHH
Confidence 2332 34667777778888877776655 446799999999999873 222221110 123356778888888
Q ss_pred HHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccc
Q psy2198 190 LSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 190 la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
++++++++||+++|.++..+. +....+.+|..|.+.++.|+++++.+
T Consensus 183 ~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 183 ALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIE 231 (349)
T ss_dssp HHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEE
T ss_pred HHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEee
Confidence 889999999999999876553 24456788999999999999999863
No 10
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.93 E-value=5.8e-25 Score=193.94 Aligned_cols=190 Identities=20% Similarity=0.176 Sum_probs=138.6
Q ss_pred CCCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHH
Q psy2198 35 PIDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE 113 (279)
Q Consensus 35 ~~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~ 113 (279)
.......+++||++.||.+|+ ||+++|++++|+|+||+|||||+++++..++ ...+.++|+++|+.++..+..+
T Consensus 36 ~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~a~~--- 110 (356)
T 1u94_A 36 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIYARK--- 110 (356)
T ss_dssp CCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHH---
T ss_pred cccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHHHHH---
Confidence 345678899999999999999 9999999999999999999999999999876 2334599999999877654222
Q ss_pred hCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchhh----HHHHHHHHHHHHHH
Q psy2198 114 LSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKYV----QRAHDMRDLAHYLH 188 (279)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~~----~~~~~~~~l~~~L~ 188 (279)
.+.. .+++.+..+.+.+++.+.+..+. ...++++||||+++.++. .++.+.... ...+.+.++++.|.
T Consensus 111 --~g~~---~~~l~i~~~~~~e~~~~~~~~l~--~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~ 183 (356)
T 1u94_A 111 --LGVD---IDNLLCSQPDTGEQALEICDALA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 183 (356)
T ss_dssp --TTCC---GGGCEEECCSSHHHHHHHHHHHH--HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHH
T ss_pred --cCCC---hhheeeeCCCCHHHHHHHHHHHH--hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHH
Confidence 2332 34667777777777777776554 345789999999999874 332221110 12345678888899
Q ss_pred HHHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccc
Q psy2198 189 ELSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 189 ~la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
.++++++++||+++|.++..+. +....+.+|..|.+.++.|+++++.+
T Consensus 184 ~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~ 233 (356)
T 1u94_A 184 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 233 (356)
T ss_dssp HHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEE
T ss_pred HHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEee
Confidence 9999999999999999987654 24567888999999999999999865
No 11
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.93 E-value=1e-24 Score=192.89 Aligned_cols=190 Identities=22% Similarity=0.213 Sum_probs=139.4
Q ss_pred CCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 36 IDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 36 ~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
......+++||++.||.+|+ |||++|++++|+|+||+|||+|+++++..++ ...+.|+|+++|+.++..+..+
T Consensus 48 ~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~~a~~---- 121 (366)
T 1xp8_A 48 SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPVYARA---- 121 (366)
T ss_dssp CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHH----
T ss_pred ccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHHHHHH----
Confidence 35567899999999999999 9999999999999999999999999999876 2334599999999876553221
Q ss_pred CCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchhh----HHHHHHHHHHHHHHH
Q psy2198 115 SPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKYV----QRAHDMRDLAHYLHE 189 (279)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~~----~~~~~~~~l~~~L~~ 189 (279)
.+.. .+++.+..+.+.+++.+.+.... ...++++||||+++.++. .++.+.... .+.+.+.++++.|+.
T Consensus 122 -~g~d---~~~l~i~~~~~~e~~l~~l~~l~--~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~ 195 (366)
T 1xp8_A 122 -LGVN---TDELLVSQPDNGEQALEIMELLV--RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTA 195 (366)
T ss_dssp -TTCC---GGGCEEECCSSHHHHHHHHHHHH--TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHH
T ss_pred -cCCC---HHHceeecCCcHHHHHHHHHHHH--hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 2332 35677777888888888777665 446789999999999874 333221110 133557788888999
Q ss_pred HHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecccc
Q psy2198 190 LSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 190 la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
++++++++||+++|.++..+. .+...+.+|..|.+.++.|+++++...
T Consensus 196 ~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~~ 245 (366)
T 1xp8_A 196 ILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQ 245 (366)
T ss_dssp HHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEESC
T ss_pred HHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecch
Confidence 999999999999999887653 245678899999999999999998764
No 12
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.93 E-value=1.5e-24 Score=179.01 Aligned_cols=186 Identities=27% Similarity=0.353 Sum_probs=140.7
Q ss_pred eeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc
Q psy2198 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK 121 (279)
Q Consensus 42 ~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~ 121 (279)
+++||++.||.+++||+++|++++|+|+||+|||||+.+++. . ..++++|++++..++..++.++... .++..+
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~~~~~-~~~~~~ 74 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQMAET-RGLNPE 74 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHHHHHT-TTCCHH
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHHHHHh-cCCChH
Confidence 489999999999999999999999999999999999999998 2 4567999999987777777776543 333222
Q ss_pred -ccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEE
Q psy2198 122 -CSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVIC 200 (279)
Q Consensus 122 -~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~ 200 (279)
..+++.+....+..+....+.........+++++|||+++.......... .+...+.++++.|+++++++++++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~---~~~~~~~~~~~~L~~l~~~~~~~vi~ 151 (220)
T 2cvh_A 75 EALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRS---GLIAELSRQLQVLLWIARKHNIPVIV 151 (220)
T ss_dssp HHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSS---TTHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchH---HHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 44566776666654443333322211112799999999998764321111 13456788899999999999999999
Q ss_pred ecccccccCCCCCccCccccchhhhhhhheeeecccc
Q psy2198 201 TNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 201 v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
++|..+..+. ....|.++..|++.++.++++.+...
T Consensus 152 ~~h~~~~~~~-~~~~p~~~~~~~~~~d~vi~l~~~~~ 187 (220)
T 2cvh_A 152 INQVHFDSRT-EMTKPVAEQTLGYRCKDILRLDKLPK 187 (220)
T ss_dssp EECSSSSCTT-SSCCSCCCHHHHHTSSEEEEEEECSS
T ss_pred EeeEEEcCCC-CccccCCCcceeecCcEEEEEEEecC
Confidence 9999886654 45778899999999999999998754
No 13
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.92 E-value=3.3e-24 Score=178.20 Aligned_cols=187 Identities=25% Similarity=0.368 Sum_probs=134.9
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ----PHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~----~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
..++++||++.||.+|+||+++|++++|+||||||||||++.+++....++ ..++++|++++..++.+++..+.+.
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~ 82 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 82 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999775322 1455999999987777777777654
Q ss_pred CCCCCcc-ccCcEEEEecCCHHHHHHHHHhhhcc-C-----CCCeeEEEEeCcchhhccccccc-hhhHHHHHHHHHHHH
Q psy2198 115 SPLAKPK-CSDKIFITHCYEFIDLKRTLESQSGF-I-----ENKVGMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHY 186 (279)
Q Consensus 115 ~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~~-~-----~~~~~lvvID~l~~~~~~~~~~~-~~~~~~~~~~~l~~~ 186 (279)
. ++.++ +.+++.+.......+....+...... . ..+++++++|+++..++...++. ...++...+.++++.
T Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~ 161 (231)
T 4a74_A 83 R-GLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD 161 (231)
T ss_dssp T-TSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHH
T ss_pred c-CCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 3 33332 66788887776644332222221111 2 57899999999999877655442 123344456789999
Q ss_pred HHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeeccc
Q psy2198 187 LHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 187 L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
|+++++++|++||+++|..+. +|..|.+.++.++++++.+
T Consensus 162 l~~~~~~~g~tvi~vtH~~~~----------~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 162 LHRLANLYDIAVFVTNQVQAN----------GGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHTCEEEEEEECC-------------------CCSEEEEEEECT
T ss_pred HHHHHHHCCCeEEEEeecccC----------cchhhHhhceEEEEEEecC
Confidence 999999999999999999886 6788999999999998843
No 14
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.90 E-value=6.5e-23 Score=209.89 Aligned_cols=187 Identities=20% Similarity=0.177 Sum_probs=151.8
Q ss_pred CCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhC
Q psy2198 37 DMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELS 115 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~ 115 (279)
.....+++||+++||++|+ ||+++|++++|+|+||+|||+|+++++..++. ..+.++|+++|+.+.... ...
T Consensus 707 ~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~--~g~~VlyiS~Ees~~ql~-----A~r 779 (2050)
T 3cmu_A 707 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARK 779 (2050)
T ss_dssp TTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHH
T ss_pred hcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECCCcHHHHH-----HHH
Confidence 3567899999999999998 79999999999999999999999999999872 334599999999976553 222
Q ss_pred CCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchh----hHHHHHHHHHHHHHHHH
Q psy2198 116 PLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKY----VQRAHDMRDLAHYLHEL 190 (279)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~----~~~~~~~~~l~~~L~~l 190 (279)
.++. .+++++.++.+.+++.+.++++. ....+++||||+++.++. ....+... ....+++.++++.|+++
T Consensus 780 lG~~---~~~l~i~~~~~i~~i~~~~r~l~--~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~l 854 (2050)
T 3cmu_A 780 LGVD---IDNLLCSQPDTGEQALEICDALA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 854 (2050)
T ss_dssp TTCC---TTTCEEECCSSHHHHHHHHHHHH--HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred cCCC---ccceEEecCCCHHHHHHHHHHHh--hccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 2332 36888888899999988887754 335789999999999876 33221100 11234578899999999
Q ss_pred HHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeecc
Q psy2198 191 SIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYL 235 (279)
Q Consensus 191 a~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~ 235 (279)
|++++++||+++|+++..+. ++...|+||.+|.+.++.|++++|.
T Consensus 855 Ake~~v~VI~l~Qv~r~~e~~fgdp~~p~GG~~l~h~a~~Rl~Lrr~ 901 (2050)
T 3cmu_A 855 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 901 (2050)
T ss_dssp HHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred HHHhCCEEEEeccccccchhhcCCCccccCCceeeeeeeEEEEEEee
Confidence 99999999999999999876 5678999999999999999999987
No 15
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.89 E-value=3.7e-22 Score=173.88 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=136.8
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||.++ ||+++|++++|+|+||+|||||+++++..++. ....++||+.|+.. .....++.....++
T Consensus 47 ~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl~~slE~s~-~~l~~R~~~~~~~i 122 (315)
T 3bh0_A 47 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLEMGK-KENIKRLIVTAGSI 122 (315)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEEEEESSSCH-HHHHHHHHHHHTTC
T ss_pred CCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEECCCCH-HHHHHHHHHHHcCC
Confidence 4678999999999998 89999999999999999999999999988862 23469999999762 22222332221122
Q ss_pred Cc------------c------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCee--EEEEeCcchhhcccccc
Q psy2198 119 KP------------K------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVG--MIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 119 ~~------------~------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~--lvvID~l~~~~~~~~~~ 170 (279)
.. . ...++++... .+..++...+.+.. ...+++ +||||+++.+.... .
T Consensus 123 ~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~--~~~~~~~~lVVID~l~~l~~~~-~- 198 (315)
T 3bh0_A 123 NAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK--RKNPGKRVIVMIDYLQLLEPAK-A- 198 (315)
T ss_dssp CHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHH--HTSSSCCEEEEEECGGGSBCSC-T-
T ss_pred CHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCCeEEEEeCchhcCCCC-C-
Confidence 11 0 0135555544 46788888777765 345678 99999999875421 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeeccc
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~ 236 (279)
...+...+.++++.|+++|++++++||+++|.++..+......|. ++..+++.++..+++++..
T Consensus 199 --~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~ 267 (315)
T 3bh0_A 199 --NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDD 267 (315)
T ss_dssp --TSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEeccc
Confidence 112567789999999999999999999999999876643233333 3456789999999998864
No 16
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.1e-22 Score=170.89 Aligned_cols=187 Identities=16% Similarity=0.110 Sum_probs=123.9
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCC
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSP 116 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~ 116 (279)
..+.++++||++.||++|+||+++|++++|+|+||+|||+|+++++...+. .....++|++.|+. .+++.+.+...
T Consensus 6 ~~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~-~~~~~v~~~s~E~~--~~~~~~~~~~~- 81 (251)
T 2zts_A 6 YQPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEER--ARDLRREMASF- 81 (251)
T ss_dssp --CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSC--HHHHHHHHHTT-
T ss_pred cCCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCceeecccCC--HHHHHHHHHHc-
Confidence 347889999999999999999999999999999999999999999877542 12334999999976 33333322211
Q ss_pred CCCcc---ccCcEE------------------EEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 117 LAKPK---CSDKIF------------------ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 117 ~~~~~---~~~~i~------------------~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
+...+ ...++. .......+++...+.... ...+++++|||+++.+.....
T Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vviD~~~~l~~~~~------- 152 (251)
T 2zts_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVV--KAINAKRLVIDSIPSIALRLE------- 152 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHH--HHTTCSEEEEECHHHHHHHSS-------
T ss_pred CCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHH--HhcCCcEEEEEcHHHHhhhcc-------
Confidence 11111 111111 112334555555555554 456889999999998764321
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeeccccccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEISI 240 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~~~ 240 (279)
+.....++++.|+++++++|+++++++|....... .......+++.++..+.+++......
T Consensus 153 ~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~----~~~~~~~~~~~aD~vi~l~~~~~~~~ 213 (251)
T 2zts_A 153 EERKIREVLLKLNTILLEMGVTTILTTEAPDPQHG----KLSRYGIEEFIARGVIVLDLQEKNIE 213 (251)
T ss_dssp SGGGHHHHHHHHHHHHHHHCCEEEEEECCC----C----CSSSSSCGGGGCSEEEEEEEEECSSS
T ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEEEeccccc----ccccCCceeEEeeEEEEEEEEecCCe
Confidence 12345678899999999999999999998765443 12233456777888888877655443
No 17
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.88 E-value=6.6e-23 Score=178.98 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=137.8
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||+++ |||++|+++.|+|+||+|||||+++++..++. ....|+||+.|++. .....+++....++
T Consensus 25 ~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~-~ql~~Rlls~~~~v 100 (338)
T 4a1f_A 25 EVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMSA-EQLALRALSDLTSI 100 (338)
T ss_dssp CCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSCH-HHHHHHHHHHHHCC
T ss_pred CcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCH-HHHHHHHHHHhhCC
Confidence 4678999999999997 69999999999999999999999999998863 34459999999862 22222332221111
Q ss_pred Ccc----------------------ccCcEEEEec--CCHHHHHHHHHhhhccCCC-CeeEEEEeCcchhhccccccchh
Q psy2198 119 KPK----------------------CSDKIFITHC--YEFIDLKRTLESQSGFIEN-KVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~-~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
... ...++++... .++.++...++.+. ..+ ++++||||+|+.+..... .
T Consensus 101 ~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~--~~~gg~~lIVIDyLqlm~~~~~----~ 174 (338)
T 4a1f_A 101 NMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK--SQHKELGIAFIDYLQLMSGSKA----T 174 (338)
T ss_dssp CHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH--HHCTTEEEEEEEEEECCCTHHH----H
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH--HhcCCCCEEEEechHHhcCCCC----C
Confidence 110 1234666544 36788888877765 334 899999999998754221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCc-----cccchhhhhhhheeeeccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA-----LGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~-----~g~~~~~~~~~rl~l~k~~ 236 (279)
..+..++.++.+.|+.+|++++|+||+++|+++..+.....+|. ++..+++.+|..+++++..
T Consensus 175 ~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R~~ 242 (338)
T 4a1f_A 175 KERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGY 242 (338)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEECHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEecch
Confidence 22456788999999999999999999999999987653333443 3555789999999998863
No 18
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.88 E-value=5.9e-22 Score=201.10 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=148.5
Q ss_pred CCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhC
Q psy2198 37 DMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELS 115 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~ 115 (279)
.....+++||++.||.+|+ ||+++|++++|+|+||+|||||+++++..++ ...+.++||++|+..+..+.. .
T Consensus 358 ~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~a~-----~ 430 (1706)
T 3cmw_A 358 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIYAR-----K 430 (1706)
T ss_dssp GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHHHH-----H
T ss_pred cccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHHHH-----H
Confidence 4567899999999999999 9999999999999999999999999999886 234459999999997765422 2
Q ss_pred CCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchh----hHHHHHHHHHHHHHHHH
Q psy2198 116 PLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKY----VQRAHDMRDLAHYLHEL 190 (279)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~----~~~~~~~~~l~~~L~~l 190 (279)
.++. .+++.+..+.+.+++.+.+.... ...++++|||||++.++. .++.+..+ ..+.+.+.+.++.|+.+
T Consensus 431 lGvd---~~~L~i~~~~~~e~~l~~l~~lv--~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ 505 (1706)
T 3cmw_A 431 LGVD---IDNLLCSQPDTGEQALEICDALA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 505 (1706)
T ss_dssp TTCC---GGGCEEECCSSHHHHHHHHHHHH--HHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred cCCC---HHHeEEcCCCCHHHHHHHHHHHH--HhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 2332 35677788888888887776654 446899999999999874 22211110 12445677888889999
Q ss_pred HHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccc
Q psy2198 191 SIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 191 a~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
+++++++||+++|.++..+. +...+|.+|..|++.++.++++++..
T Consensus 506 ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 506 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp HHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred HHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 99999999999999988654 24567889999999999999999865
No 19
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.88 E-value=2.1e-21 Score=176.84 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=135.5
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...+++||++.||.++ ||+++|++++|+|+||+|||+|+++++..++.. ....|+|++.|++. .....+++....++
T Consensus 179 ~~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~-~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 179 EVAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPA-AQLTLRMMCSEARI 255 (444)
T ss_dssp ----CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCH-HHHHHHHHHHHTTC
T ss_pred CCCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCH-HHHHHHHHHHHcCC
Confidence 3578999999999998 899999999999999999999999999988621 12349999999762 22223333322222
Q ss_pred Ccc----------------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh
Q psy2198 119 KPK----------------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV 174 (279)
Q Consensus 119 ~~~----------------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~ 174 (279)
... ...++++... .+..++...+.+.. ...++++||||+++.+.... .+....
T Consensus 256 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~--~~~~~~lIvID~l~~~~~~~-~~~~~~ 332 (444)
T 2q6t_A 256 DMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLV--SQNQVGLIIIDYLQLMSGPG-SGKSGE 332 (444)
T ss_dssp CTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH--HHSCCCEEEEECGGGCBCC--------
T ss_pred CHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEcChhhcCCCc-CCCCCC
Confidence 211 0124555543 36788877777665 34579999999999875320 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcccc-----chhhhhhhheeeecccc
Q psy2198 175 QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGL-----TYERAHDMRDLAHYLHE 237 (279)
Q Consensus 175 ~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~-----~~~~~~~~rl~l~k~~~ 237 (279)
.+.+.+.++++.|+.+|++++++||+++|.++..+.....+|.++. .+++.++..+++++...
T Consensus 333 ~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~ 400 (444)
T 2q6t_A 333 NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEY 400 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccc
Confidence 2567889999999999999999999999999877653334455443 57899999999988754
No 20
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.88 E-value=7.8e-22 Score=202.03 Aligned_cols=189 Identities=20% Similarity=0.168 Sum_probs=148.5
Q ss_pred CCCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 36 IDMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 36 ~~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
......+++||++.||.+|+ ||+++|++++|+||||+|||||+++++..++ ...+.++||++|+.++..+..
T Consensus 357 ~~~~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~a~----- 429 (2050)
T 3cmu_A 357 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIYAR----- 429 (2050)
T ss_dssp TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHHHH-----
T ss_pred cccCCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHHHH-----
Confidence 34567899999999999999 9999999999999999999999999999986 233459999999997765422
Q ss_pred CCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchh----hHHHHHHHHHHHHHHH
Q psy2198 115 SPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKY----VQRAHDMRDLAHYLHE 189 (279)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~----~~~~~~~~~l~~~L~~ 189 (279)
..+. ..+++++..+.+.+++.+.+..+. ...++++||||+++.++. .++.+..+ ....+.+.+.++.|+.
T Consensus 430 ~lGv---d~~~L~I~~~~~~e~il~~~~~lv--~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~ 504 (2050)
T 3cmu_A 430 KLGV---DIDNLLCSQPDTGEQALEICDALA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 504 (2050)
T ss_dssp HTTC---CTTTCEEECCSSHHHHHHHHHHHH--HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HcCC---CHHHeEEeCCCCHHHHHHHHHHHH--HhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHH
Confidence 1233 235778888888888888877654 346799999999999874 22221111 1133456677777878
Q ss_pred HHHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccc
Q psy2198 190 LSIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLH 236 (279)
Q Consensus 190 la~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~ 236 (279)
++++++++||+++|.++..+. ++..+|.+|..|++.++.++++++..
T Consensus 505 lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 505 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp HHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred HHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecc
Confidence 899999999999999988654 24577899999999999999999865
No 21
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.87 E-value=1.5e-21 Score=198.23 Aligned_cols=224 Identities=19% Similarity=0.188 Sum_probs=164.0
Q ss_pred CCCCceeccCChhhhhhhC-CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhC
Q psy2198 37 DMTEIVVSTGSEKFDSILK-GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELS 115 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~-gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~ 115 (279)
.....+++||++.||++|+ ||+++|++++|+|+||+|||||+++++..++ ...+.++|+++|+.....+ ...
T Consensus 707 ~~~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa--~~g~~VlyiS~Ees~~ql~-----A~~ 779 (1706)
T 3cmw_A 707 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARK 779 (1706)
T ss_dssp GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHH
T ss_pred cccccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH--HcCCCeEEEeccchHHHHH-----HHH
Confidence 3457899999999999999 9999999999999999999999999999886 2333599999999876543 222
Q ss_pred CCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhc-cccccchhh----HHHHHHHHHHHHHHHH
Q psy2198 116 PLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFR-NTYAEDKYV----QRAHDMRDLAHYLHEL 190 (279)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~-~~~~~~~~~----~~~~~~~~l~~~L~~l 190 (279)
.+.. .+++.+..+.+.+++.+.+.... ...++++||||+++.+.. .+..+..+. .+.+.+.++++.|+.+
T Consensus 780 lGvd---~~~L~i~~~~~leei~~~l~~lv--~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~l 854 (1706)
T 3cmw_A 780 LGVD---IDNLLCSQPDTGEQALEICDALA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 854 (1706)
T ss_dssp TTCC---GGGCEEECCSSHHHHHHHHHHHH--HHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred cCCC---hhheEEecCCcHHHHHHHHHHHH--HccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHH
Confidence 2332 35778888888888888887654 346789999999999863 222111110 1344567788888889
Q ss_pred HHHcCcEEEEecccccccCC--CCCccCccccchhhhhhhheeeeccccc----c--ceeeEEEEeccccccccCCCCcc
Q psy2198 191 SIKHRIVVICTNQVTSAMTH--SDKNIPALGLTYERAHDMRDLAHYLHEI----S--IKHWIVVICTNQVTSAMTHSDKN 262 (279)
Q Consensus 191 a~~~~~~vi~v~h~~~~~~~--~~~~~~~~g~~~~~~~~~rl~l~k~~~~----~--~~~~~~v~~~~~~~~~~~~~~~~ 262 (279)
+++++++||+++|+++..+. ++...|.++..+++.++.+++++|.... . .......+..|.....-......
T Consensus 855 Ake~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR~gp~~~~~~F~ 934 (1706)
T 3cmw_A 855 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ 934 (1706)
T ss_dssp HHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEE
T ss_pred HHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEecccccccccccCcEEEEEEEecCCCCCCceEEEE
Confidence 99999999999999988654 2345678899999999999999876421 1 11344555566555444444555
Q ss_pred c-ccccccccc
Q psy2198 263 I-PALGLSWSN 272 (279)
Q Consensus 263 ~-~~~~~~~~~ 272 (279)
| ..-|+.|..
T Consensus 935 I~~~~Gi~~~g 945 (1706)
T 3cmw_A 935 ILYGEGINFYG 945 (1706)
T ss_dssp EETTTEECHHH
T ss_pred EEcCCCccccc
Confidence 5 555666654
No 22
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.87 E-value=2.3e-21 Score=175.98 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=139.0
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
....+++||++.||+++ |||++|+++.|+|+||+|||+|+++++..++. ....|+||+.|++.. ....+++....+
T Consensus 175 ~~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlEms~~-ql~~R~~~~~~~ 250 (444)
T 3bgw_A 175 GNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLEMGKK-ENIKRLIVTAGS 250 (444)
T ss_dssp SSCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSSSCTT-HHHHHHHHHHSC
T ss_pred cCCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECCCCHH-HHHHHHHHHHcC
Confidence 34678999999999998 69999999999999999999999999999873 234599999998732 222233222111
Q ss_pred ------------CCcc------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCee--EEEEeCcchhhccccc
Q psy2198 118 ------------AKPK------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVG--MIVIDSIAGIFRNTYA 169 (279)
Q Consensus 118 ------------~~~~------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~--lvvID~l~~~~~~~~~ 169 (279)
+... ...++++... .++.++...+.+.. ...+++ +||||+++.+.....
T Consensus 251 i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~--~~~~~~~~lIVID~Lq~~~~~~~- 327 (444)
T 3bgw_A 251 INAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK--RKNPGKRVIVMIDYLQLLEPAKA- 327 (444)
T ss_dssp CCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHH--HHSCSSCEEEEEECSTTSBCSCS-
T ss_pred CCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEecHHhccCCCC-
Confidence 1111 0235555543 47788888877765 335788 999999998754321
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeecccc
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~~ 237 (279)
. ..+.+.+.++.+.|+.+|+++|++||+++|.++..+.....+|.+ +..+++.++..+++++...
T Consensus 328 -~--~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~ 397 (444)
T 3bgw_A 328 -N--DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDY 397 (444)
T ss_dssp -S--SCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGG
T ss_pred -C--CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEecccc
Confidence 1 126678899999999999999999999999998765422333433 3458899999999998653
No 23
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.87 E-value=3.1e-21 Score=161.75 Aligned_cols=175 Identities=19% Similarity=0.149 Sum_probs=119.9
Q ss_pred ceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCc
Q psy2198 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKP 120 (279)
Q Consensus 41 ~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~ 120 (279)
.+++||++.||++|+||+++|++++|+|+||+|||||+.+++...+ ...++++|++++.. ...+.+... ..++..
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~--~~~~~~~~~-~~g~~~ 77 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEH--PVQVRQNMA-QFGWDV 77 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSC--HHHHHHHHH-TTTCCC
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCC--HHHHHHHHH-HcCCCH
Confidence 5799999999999999999999999999999999999999998875 24456999999975 333333332 223322
Q ss_pred c---ccCcEEEEe-------------------cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHH
Q psy2198 121 K---CSDKIFITH-------------------CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAH 178 (279)
Q Consensus 121 ~---~~~~i~~~~-------------------~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~ 178 (279)
+ ...++.+.. ..+..++...+.+.+ ...+++++|||+++.+...+ . .
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~vviD~~~~l~~~~----~-----~ 146 (247)
T 2dr3_A 78 KPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAI--RDINAKRVVVDSVTTLYINK----P-----A 146 (247)
T ss_dssp HHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHH--HHHTCCEEEEETSGGGTTTC----G-----G
T ss_pred HHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHH--HHhCCCEEEECCchHhhcCC----H-----H
Confidence 1 012333332 234455555555544 33468999999999875221 1 1
Q ss_pred HHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeecccc
Q psy2198 179 DMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 179 ~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
...+.+..|.+++++.|++||+++|..+.... ..+..|++.++.++++++...
T Consensus 147 ~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~------~~~~~~~~~~D~vi~L~~~~~ 199 (247)
T 2dr3_A 147 MARSIILQLKRVLAGTGCTSIFVSQVSVGERG------FGGPGVEHGVDGIIRLDLDEI 199 (247)
T ss_dssp GHHHHHHHHHHHHHHTTCEEEEEEECC----C------CC-CCHHHHSSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCccc------ccccccceeEEEEEEEEEEcc
Confidence 23456677778888899999999999875421 122358888899999987653
No 24
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.86 E-value=1.6e-20 Score=173.60 Aligned_cols=190 Identities=12% Similarity=0.081 Sum_probs=136.6
Q ss_pred CCCceecc-CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCC
Q psy2198 38 MTEIVVST-GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSP 116 (279)
Q Consensus 38 ~~~~~i~t-g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~ 116 (279)
....+++| |++.||.++ ||+++|++++|+|+||+|||+|+++++..++.. ....|+|+++|+.. .....+++....
T Consensus 219 ~~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s~-~~l~~r~~~~~~ 295 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEESV-EETAEDLIGLHN 295 (503)
T ss_dssp SCTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSCH-HHHHHHHHHHHT
T ss_pred cccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCCH-HHHHHHHHHHHc
Confidence 35678999 999999998 699999999999999999999999999998621 12349999999862 222233333222
Q ss_pred CCCcc---------------------c--cCcEEEEec---CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccccc
Q psy2198 117 LAKPK---------------------C--SDKIFITHC---YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 117 ~~~~~---------------------~--~~~i~~~~~---~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
++... . ..++++... .+.+++...+.... ...++++||||+++.+.... .
T Consensus 296 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~--~~~~~~lvVID~l~~l~~~~-~- 371 (503)
T 1q57_A 296 RVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMR--SGLGCDVIILDHISIVVSAS-G- 371 (503)
T ss_dssp TSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHH--HTTCCSEEEEECTTCCCSCC-S-
T ss_pred CCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHH--HhcCCCEEEEccchhcCCCC-C-
Confidence 22110 0 245666654 56788888777765 44579999999999875321 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCC---------CCccCccccchhhhhhhheeeecccc
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHS---------DKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~---------~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
. ..+.+.+.++++.|+++|++++++||+++|.++ .+.. ......++..+++.++..+++++...
T Consensus 372 ~--~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~ 444 (503)
T 1q57_A 372 E--SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 444 (503)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSS
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCc
Confidence 1 125677899999999999999999999999998 2211 11223345668899999999988654
No 25
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.86 E-value=7.7e-21 Score=173.55 Aligned_cols=190 Identities=16% Similarity=0.232 Sum_probs=135.7
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
...+++||++.||+++ ||+++|++++|+|+||+|||||+++++..++. ..+ .|+|++.|+.. .....++.....+
T Consensus 182 ~~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~ 257 (454)
T 2r6a_A 182 EITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSA-QQLVMRMLCAEGN 257 (454)
T ss_dssp CCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCH-HHHHHHHHHHHHT
T ss_pred CCCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCH-HHHHHHHHHHHcC
Confidence 4578999999999998 89999999999999999999999999998862 123 49999999762 2222222221111
Q ss_pred CCc----------c------------ccCcEEEEec--CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchh
Q psy2198 118 AKP----------K------------CSDKIFITHC--YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 118 ~~~----------~------------~~~~i~~~~~--~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+.. . ...++++... .+..++...+.... ...++++||||+++.+...... .
T Consensus 258 ~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~--~~~~~~livID~l~~~~~~~~~-~-- 332 (454)
T 2r6a_A 258 INAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK--QESGLGMIVIDYLQLIQGSGRS-K-- 332 (454)
T ss_dssp CCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH--TTTCCCEEEEECGGGSCCSCC-----
T ss_pred CCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEccHHHhccCCCC-C--
Confidence 111 0 0124555443 47788887777765 4457999999999987643211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCcc-----ccchhhhhhhheeeecccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-----GLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~-----g~~~~~~~~~rl~l~k~~~ 237 (279)
..+...+.++++.|+.+|++++++||+++|.++..+.....+|.+ +..+++.++..+++++...
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 124567889999999999999999999999998776533334443 3467899999999988654
No 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.82 E-value=5.1e-19 Score=146.78 Aligned_cols=176 Identities=21% Similarity=0.254 Sum_probs=116.6
Q ss_pred ceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCc
Q psy2198 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKP 120 (279)
Q Consensus 41 ~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~ 120 (279)
++++||++.||.++.||+++|++++|+||||+|||||++.++.... ...+.++|++.+.. ...+...... .++..
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~--~~~~~~~~~~-~~~~~ 77 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEES--RDSIIRQAKQ-FNWDF 77 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSC--HHHHHHHHHH-TTCCC
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccC--HHHHHHHHHH-hcchH
Confidence 4799999999999989999999999999999999999999998775 23455999998864 3333332222 22222
Q ss_pred c--ccCcEEEEe-------------cCCHHHHHHHHHhhhccCCCCee--EEEEeCcchhhccccccchhhHHHHHHHHH
Q psy2198 121 K--CSDKIFITH-------------CYEFIDLKRTLESQSGFIENKVG--MIVIDSIAGIFRNTYAEDKYVQRAHDMRDL 183 (279)
Q Consensus 121 ~--~~~~i~~~~-------------~~~~~~l~~~i~~~~~~~~~~~~--lvvID~l~~~~~~~~~~~~~~~~~~~~~~l 183 (279)
+ ...++.+.. ..+..++...+.... ...+++ ++|+|+++.....+ . ....++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~llilDe~~~~~~~d--~-------~~~~~~ 146 (235)
T 2w0m_A 78 EEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAK--QKLGYGKARLVIDSVSALFLDK--P-------AMARKI 146 (235)
T ss_dssp GGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHH--HHHCSSCEEEEEETGGGGSSSC--G-------GGHHHH
T ss_pred HHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHH--HhhCCCceEEEEECchHhhcCC--H-------HHHHHH
Confidence 1 111222221 125556555555443 234678 99999999875321 1 124568
Q ss_pred HHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhhhhheeeeccccc
Q psy2198 184 AHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEI 238 (279)
Q Consensus 184 ~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~~~rl~l~k~~~~ 238 (279)
++.|++++++.+++||+++|..+.... . . +..+++.++..+++.+....
T Consensus 147 ~~~l~~~~~~~~~~vi~~~h~~~~~~~-~-~----~~~~~~~~d~vi~l~~~~~~ 195 (235)
T 2w0m_A 147 SYYLKRVLNKWNFTIYATSQYAITTSQ-A-F----GFGVEHVADGIIRFRRMIRN 195 (235)
T ss_dssp HHHHHHHHHHTTEEEEEEEC-----------------CHHHHCSEEEEEEEEEET
T ss_pred HHHHHHHHHhCCCeEEEEeccCccccc-c-c----ccchheeeeEEEEEEEEecC
Confidence 888999998999999999999852211 1 1 14577888888888876543
No 27
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.79 E-value=3e-18 Score=147.88 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=119.4
Q ss_pred CCceecc-CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCC
Q psy2198 39 TEIVVST-GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSP 116 (279)
Q Consensus 39 ~~~~i~t-g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~ 116 (279)
...+++| |++.||.+. +|+++|++++|+|+||+|||||++++++... +..| .++|++.+... .....++.....
T Consensus 13 ~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~-~~~~~r~~~~~~ 88 (296)
T 1cr0_A 13 ESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESV-EETAEDLIGLHN 88 (296)
T ss_dssp CCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCH-HHHHHHHHHHHT
T ss_pred CcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCH-HHHHHHHHHHHc
Confidence 4578999 999999996 8999999999999999999999999999885 2334 49999998641 122222222111
Q ss_pred CCCcc---------------------c--cCcEEEEe---cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhcccccc
Q psy2198 117 LAKPK---------------------C--SDKIFITH---CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAE 170 (279)
Q Consensus 117 ~~~~~---------------------~--~~~i~~~~---~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~ 170 (279)
+.... . ...+.+.. ..+..++.+.+.... ...+++++|||+++.+.... .
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~--~~~~p~llilDept~~~~~~-~- 164 (296)
T 1cr0_A 89 RVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMR--SGLGCDVIILDHISIVVSAS-G- 164 (296)
T ss_dssp TCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHH--HTTCCSEEEEEEEC---------
T ss_pred CCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcCccccCCCC-C-
Confidence 11100 1 12455543 256777766665322 34589999999999875331 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc-------CC-CCCccCccccchhhhhhhheeeecccc
Q psy2198 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM-------TH-SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 171 ~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~-------~~-~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
...+...+.++++.|++++++++++||+++|..+.. +. .......++..+++.++..+++.+.+.
T Consensus 165 --~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 --ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 001224567899999999999999999999997411 00 111222334467888898888887654
No 28
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=2.7e-17 Score=137.94 Aligned_cols=182 Identities=18% Similarity=0.130 Sum_probs=109.0
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
....+++||++.||.+|+||+++|++++|+||||||||||++.++.....+ +.++++|++++.. ...+.+... ..+
T Consensus 7 ~~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~-~~g 82 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEER--ARDLRREMA-SFG 82 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC--HHHHHHHHH-TTT
T ss_pred cccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEccCC--HHHHHHHHH-HcC
Confidence 356789999999999999999999999999999999999999999544311 4556889988865 222222222 223
Q ss_pred CCcc---ccCcEEEE------------------ecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHH
Q psy2198 118 AKPK---CSDKIFIT------------------HCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQR 176 (279)
Q Consensus 118 ~~~~---~~~~i~~~------------------~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~ 176 (279)
+..+ ....+.+. ...+..++...+...+ ...+++++++|+++.......+.. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~p~~lilDep~~~ld~~~d~~---~~ 157 (251)
T 2ehv_A 83 WDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVV--KAINAKRLVIDSIPSIALRLEEER---KI 157 (251)
T ss_dssp CCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHH--HHTTCSEEEEECHHHHHHHSSSGG---GH
T ss_pred CChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHH--HhhCCCEEEEccHHHHHhhcCCHH---HH
Confidence 3222 11122221 1223344444443333 346889999999998765321111 12
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecccccccCCCCCccCccccchhhhh-hhheeeecccc
Q psy2198 177 AHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAH-DMRDLAHYLHE 237 (279)
Q Consensus 177 ~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~~~~~~~~~g~~~~~~~-~~rl~l~k~~~ 237 (279)
...+. ..++.+ ++.|+|||+++|..+.... ...+..++..+ +..+++.+...
T Consensus 158 ~~~l~---~l~~~l-~~~g~tii~vtH~~~~~~~-----~~~~~~i~~~~aD~vi~l~~~~~ 210 (251)
T 2ehv_A 158 REVLL---KLNTIL-LEMGVTTILTTEAPDPQHG-----KLSRYGIEEFIARGVIVLDLQEK 210 (251)
T ss_dssp HHHHH---HHHHHH-HHHCCEEEEEECCC----C-----CSSSSSCGGGGCSEEEEEEEEEC
T ss_pred HHHHH---HHHHHH-HHCCCeEEEEECCCCCCcc-----cccccChhhEeeeEEEEEeeecc
Confidence 22233 333333 3469999999999876531 01123335566 87888876543
No 29
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.73 E-value=2.5e-17 Score=140.90 Aligned_cols=155 Identities=15% Similarity=0.228 Sum_probs=101.9
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--------CCCeEEEEECCCCCCH--HHH
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ--------PHKGVLYICTESVFPT--ARL 108 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--------~~~gvlyi~~e~~~~~--~~~ 108 (279)
....++||++.||.++ ||+++|++++|+|+||+|||||++++++.+.... ..+.++|++.|+.... .++
T Consensus 9 ~~~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~ 87 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 87 (279)
T ss_dssp HHHHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred HHHHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence 3457999999999998 5999999999999999999999999998764110 1244999999986321 122
Q ss_pred HHHHHhCCCCCcc----ccCcEEEEec-------CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHH
Q psy2198 109 AQLCELSPLAKPK----CSDKIFITHC-------YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177 (279)
Q Consensus 109 ~~~~~~~~~~~~~----~~~~i~~~~~-------~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~ 177 (279)
..+ .. .+... ..+++.+... .+..+ .+.+...+ .++++||||+++.++..+ .. ..
T Consensus 88 ~~~-g~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~-~~~i~~l~----~~~~livlDe~~~~~~~d-~~-----~~ 153 (279)
T 1nlf_A 88 HAL-GA--HLSAEERQAVADGLLIQPLIGSLPNIMAPEW-FDGLKRAA----EGRRLMVLDTLRRFHIEE-EN-----AS 153 (279)
T ss_dssp HHH-HT--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHH-HHHHHHHH----TTCSEEEEECGGGGCCSC-TT-----CH
T ss_pred HHH-Hh--hcChhhhhhccCceEEeecCCCCcccCCHHH-HHHHHHhc----CCCCEEEECCHHHhcCCC-cC-----ch
Confidence 221 11 11110 2244444322 12222 33444433 258999999999865432 11 12
Q ss_pred HHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 178 HDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 178 ~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
..+.++++.|++++++.|++||+++|..+..
T Consensus 154 ~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 154 GPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 4567788999999998999999999998765
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=2.5e-15 Score=139.49 Aligned_cols=181 Identities=20% Similarity=0.205 Sum_probs=115.9
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
...+++||++.||.+|+||+++|++++|.|+||+|||||++.+++... +.|+ ++|+.+++. ...+..... ..+
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~~vi~~~~ee~--~~~l~~~~~-~~g 332 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC---ANKERAILFAYEES--RAQLLRNAY-SWG 332 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEESSSC--HHHHHHHHH-TTS
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCCCEEEEEEeCC--HHHHHHHHH-HcC
Confidence 567899999999999999999999999999999999999999999875 3454 899999875 222222222 122
Q ss_pred CCcc---ccCcEEEEe----cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHH
Q psy2198 118 AKPK---CSDKIFITH----CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHEL 190 (279)
Q Consensus 118 ~~~~---~~~~i~~~~----~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l 190 (279)
+..+ ....+.+.. ..+..+....+...+ ...+++++|+|+++.+... ..+ . +.++.+..|.+.
T Consensus 333 ~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~--l~~~p~llilDp~~~Ld~~-~~~-----~--~~~~~i~~ll~~ 402 (525)
T 1tf7_A 333 MDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEI--NDFKPARIAIDSLSALARG-VSN-----N--AFRQFVIGVTGY 402 (525)
T ss_dssp CCHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHH--HTTCCSEEEEECHHHHTSS-SCH-----H--HHHHHHHHHHHH
T ss_pred CCHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHH--HhhCCCEEEEcChHHHHhh-CCh-----H--HHHHHHHHHHHH
Confidence 2211 111233322 235555555444433 3468999999977776432 111 1 123333333333
Q ss_pred HHHcCcEEEEecccccccCCCCCccCccc-cchhhhhhhheeeeccccccc
Q psy2198 191 SIKHRIVVICTNQVTSAMTHSDKNIPALG-LTYERAHDMRDLAHYLHEISI 240 (279)
Q Consensus 191 a~~~~~~vi~v~h~~~~~~~~~~~~~~~g-~~~~~~~~~rl~l~k~~~~~~ 240 (279)
+++.|+++|+++|.....+. ..+. ..+.+.++..+++++.+....
T Consensus 403 l~~~g~tvilvsh~~~~~~~-----~~~~~~~l~~~~D~vi~L~~ge~~~~ 448 (525)
T 1tf7_A 403 AKQEEITGLFTNTSDQFMGA-----HSITDSHISTITDTIILLQYVEIRGE 448 (525)
T ss_dssp HHHTTCEEEEEEECSSSSCC-----CSSCSSCCTTTCSEEEEEEEEEETTE
T ss_pred HHhCCCEEEEEECcccccCc-----ccccCcccceeeeEEEEEEEEEeCCE
Confidence 44679999999998743332 1222 456778888888877664433
No 31
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.55 E-value=5.2e-15 Score=127.22 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=89.4
Q ss_pred ceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC--CCCCCHHHHHHHHHhCCCC
Q psy2198 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT--ESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 41 ~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~--e~~~~~~~~~~~~~~~~~~ 118 (279)
..++||++.||++| ||+++|.+++|+||||+|||+|+++++... .+.++|++. ++.. .
T Consensus 104 ~~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v-------------~- 163 (331)
T 2vhj_A 104 GELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPL-------------S- 163 (331)
T ss_dssp TTCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSS-------------T-
T ss_pred hccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhh-------------h-
Confidence 34789999999999 999999999999999999999999998751 223889988 3321 0
Q ss_pred CccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEE
Q psy2198 119 KPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVV 198 (279)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~v 198 (279)
... .+.+++.+.+.+.+. ..+ ++|||+++.+..............+.+++++..|..++++.++++
T Consensus 164 ---~~~-------~~le~~l~~i~~~l~--~~~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtV 229 (331)
T 2vhj_A 164 ---GYN-------TDFNVFVDDIARAML--QHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVV 229 (331)
T ss_dssp ---TCB-------CCHHHHHHHHHHHHH--HCS--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEE
T ss_pred ---hhh-------cCHHHHHHHHHHHHh--hCC--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEE
Confidence 000 345555554444432 222 999999998754322110000113457788899999999999999
Q ss_pred EEecccc
Q psy2198 199 ICTNQVT 205 (279)
Q Consensus 199 i~v~h~~ 205 (279)
|++++..
T Consensus 230 Ilttnp~ 236 (331)
T 2vhj_A 230 IASLNPT 236 (331)
T ss_dssp EEECCCS
T ss_pred EEEeCCc
Confidence 9987743
No 32
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.49 E-value=3.8e-13 Score=112.94 Aligned_cols=59 Identities=8% Similarity=-0.087 Sum_probs=52.5
Q ss_pred eeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 42 ~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.++||++.||.+|+||+++|.+++|.|.||+|||+|+.+++...+ .....++|+..+++
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~--~~Ge~~~~~~~~e~ 60 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL--KSDNLVGMFSISYP 60 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH--HTTCEEEEEECSSC
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH--HCCCcEEEEEEeCC
Confidence 479999999999999999999999999999999999999998876 23334999999986
No 33
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.49 E-value=4.7e-13 Score=124.19 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=98.9
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLA 118 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~ 118 (279)
...++++|++.||.+..|++++|++++|+||||||||||++.++.....+ +..|.+|+++++. .....+... ..++
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~--~~~~~~~~~-~~g~ 92 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEET--PQDIIKNAR-SFGW 92 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC--HHHHHHHHG-GGTC
T ss_pred ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCC--HHHHHHHHH-HcCC
Confidence 45789999999999987899999999999999999999999964222221 3567999999873 333333222 2233
Q ss_pred Ccc---ccCcEEEEecC------------CHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHH
Q psy2198 119 KPK---CSDKIFITHCY------------EFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDL 183 (279)
Q Consensus 119 ~~~---~~~~i~~~~~~------------~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l 183 (279)
..+ ...++.+.... .+.++...+...+ ....+++++||+++...... +.+ ......+
T Consensus 93 ~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L--S~g~~~~lilDe~t~~~~~~--~lD----~~~~~~l 164 (525)
T 1tf7_A 93 DLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAI--QKYRARRVSIDSVTSVFQQY--DAS----SVVRREL 164 (525)
T ss_dssp CHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHH--HHHTCSEEEEECSTTTSTTT--CCH----HHHHHHH
T ss_pred ChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHH--HHcCCCEEEECCHHHHHHhc--CCH----HHHHHHH
Confidence 332 11234333211 1222222222222 34678999999999865431 111 1223445
Q ss_pred HHHHHHHHHHcCcEEEEeccccccc
Q psy2198 184 AHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 184 ~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.+.++++.+ .|+|+|+++|.....
T Consensus 165 ~~ll~~l~~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 165 FRLVARLKQ-IGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHH-HTCEEEEEEECSSSS
T ss_pred HHHHHHHHH-CCCEEEEEecCCCCc
Confidence 556666654 699999999998764
No 34
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.24 E-value=7.3e-12 Score=104.19 Aligned_cols=143 Identities=13% Similarity=0.182 Sum_probs=85.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH-------hCCCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE-------LSPLAK 119 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~-------~~~~~~ 119 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++... .+......... +...+.
T Consensus 20 ~L~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 20 ALKNV-NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 45554 45789999999999999999999999998774 6778888877643 23332222211 111111
Q ss_pred cc--ccCcEEEE------ecCCHHHHHHHHHhhh---cc-------------------------CCCCeeEEEEeCcchh
Q psy2198 120 PK--CSDKIFIT------HCYEFIDLKRTLESQS---GF-------------------------IENKVGMIVIDSIAGI 163 (279)
Q Consensus 120 ~~--~~~~i~~~------~~~~~~~l~~~i~~~~---~~-------------------------~~~~~~lvvID~l~~~ 163 (279)
+. +.+++.+. ......+..+.+.+.+ .+ ...+|+++++|+.++-
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 175 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWA 175 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 11 22222110 0111111111111110 00 1158999999999985
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 164 FRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
.+. ....++.+.|++++++.+.|||+++|...
T Consensus 176 LD~-----------~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 176 LDS-----------KTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp SCH-----------HHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCH-----------HHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 432 23356777888888778999999999875
No 35
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.18 E-value=3.1e-12 Score=108.74 Aligned_cols=145 Identities=13% Similarity=0.190 Sum_probs=86.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC-CHHHHHHHHHhCCCCCcc------
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF-PTARLAQLCELSPLAKPK------ 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~-~~~~~~~~~~~~~~~~~~------ 121 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++.... .......+. ...++-++
T Consensus 23 ~L~~i-sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~~~~~-~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 23 ALKGI-NMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGIMKLR-ESIGIVFQDPDNQL 97 (275)
T ss_dssp EEEEE-EEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHHHHHH-HSEEEECSSGGGTC
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccHHHHh-CcEEEEEcCccccc
Confidence 55555 45789999999999999999999999998773 67788888877542 222222221 11111111
Q ss_pred ----ccCcEEEEe---cCCHHHHHHHHHhhhc---c------------------------CCCCeeEEEEeCcchhhccc
Q psy2198 122 ----CSDKIFITH---CYEFIDLKRTLESQSG---F------------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 122 ----~~~~i~~~~---~~~~~~l~~~i~~~~~---~------------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
+.+++.+.. ..+..+..+.+.+.+. + ...+|+++++|+.++-.+.
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~- 176 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP- 176 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH-
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH-
Confidence 112221110 1122222222221111 0 1158999999999875432
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++.|.|||+++|......
T Consensus 177 ----------~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 177 ----------MGVSEIMKLLVEMQKELGITIIIATHDIDIVP 208 (275)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCCEEEEEESCCSSGG
T ss_pred ----------HHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 23355777788887445999999999877553
No 36
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.15 E-value=1.7e-10 Score=101.31 Aligned_cols=146 Identities=14% Similarity=0.226 Sum_probs=90.4
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHHhCCCCCcc----
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELSPLAKPK---- 121 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~~~~~~~~~---- 121 (279)
..|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++... .+...+.... ...++-++
T Consensus 42 ~aL~~v-sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~~~~~~~r-~~Ig~v~Q~~~l 116 (366)
T 3tui_C 42 QALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESELTKAR-RQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCHHHHHHHH-TTEEEECSSCCC
T ss_pred EEEEee-EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHHHHHh-CcEEEEeCCCcc
Confidence 356665 55799999999999999999999999998773 6778888887754 2333332221 11121111
Q ss_pred -----ccCcEEEE---ecCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 122 -----CSDKIFIT---HCYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 -----~~~~i~~~---~~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+.+++.+. ...+..+..+.+.+.+ .+ ...+|+++++|+.++-.+.
T Consensus 117 ~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~ 196 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCH
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 22222211 0111122211121111 10 1258999999999985432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|+++.++.|+|||+++|......
T Consensus 197 -----------~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~ 228 (366)
T 3tui_C 197 -----------ATTRSILELLKDINRRLGLTILLITHEMDVVK 228 (366)
T ss_dssp -----------HHHHHHHHHHHHHHHHSCCEEEEEESCHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 23456778888888889999999999876653
No 37
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.14 E-value=5.7e-11 Score=100.54 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=85.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP--K 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~--~ 121 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++... .+...+.+.+. +...+.. .
T Consensus 26 vL~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 26 LINDV-SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101 (266)
T ss_dssp EEEEE-EEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCB
T ss_pred EEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCC
Confidence 45554 44689999999999999999999999998774 6677888877643 23332222221 1111111 1
Q ss_pred ccCcEEEEe----cCCH-HHHHHHHHhhhcc------------------------CCC------CeeEEEEeCcchhhcc
Q psy2198 122 CSDKIFITH----CYEF-IDLKRTLESQSGF------------------------IEN------KVGMIVIDSIAGIFRN 166 (279)
Q Consensus 122 ~~~~i~~~~----~~~~-~~l~~~i~~~~~~------------------------~~~------~~~lvvID~l~~~~~~ 166 (279)
+.+++.+.. .... +.+.+.+.. ..+ .-. +|+++++|+.++-.+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~ 180 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQ-TDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHH-TTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCH
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHH-cCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCH
Confidence 112221110 0011 111111111 100 013 8999999999985432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....++.+.|++++++.++|||+++|......
T Consensus 181 -----------~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~ 212 (266)
T 4g1u_C 181 -----------YHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAA 212 (266)
T ss_dssp -----------HHHHHHHHHHHHHHHHSSEEEEEECSCHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHH
Confidence 23456778888888878899999999876653
No 38
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.12 E-value=1.7e-10 Score=95.21 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=82.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHH----HH---hCCCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQL----CE---LSPLAK 119 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~----~~---~~~~~~ 119 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.... +......+ +. +...+.
T Consensus 19 ~l~~v-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 19 ILKGI-SLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp EEEEE-EEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred eEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 34443 44789999999999999999999999988763 66788888775432 22221111 11 111111
Q ss_pred cc--ccCcEEEEe---cCCHHH----HHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhcc
Q psy2198 120 PK--CSDKIFITH---CYEFID----LKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 120 ~~--~~~~i~~~~---~~~~~~----l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~ 166 (279)
+. +.+++.+.. .....+ +.+.+.. ..+ ...+|+++++|+.++-.+.
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 173 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSE-LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-TTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCH
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHH-cCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCH
Confidence 11 222221110 011111 1111111 111 1268999999999875432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
.....+.+.|++++++ +.+||+++|....
T Consensus 174 -----------~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 174 -----------ANTKRVMDIFLKINEG-GTSIVMVTHEREL 202 (224)
T ss_dssp -----------HHHHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred -----------HHHHHHHHHHHHHHHC-CCEEEEEcCCHHH
Confidence 2235567777777766 9999999997554
No 39
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.10 E-value=2.5e-12 Score=113.72 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=85.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.++++++... +..+ -..++.+...+.+. +.
T Consensus 18 ~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 18 VSKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHH
T ss_pred EEeee-EEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHH
Confidence 45554 45789999999999999999999999998874 67788888776431 1111 00111111111111 22
Q ss_pred CcEEEE---ecCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFIT---HCYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~---~~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+++.+. ...+..+..+.+.+.+ .+ ...+|+++++|+.++-.+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~------- 166 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA------- 166 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH-------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCH-------
Confidence 222221 0112222222222111 11 0147899999998875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.|+|+|+++|.....
T Consensus 167 ----~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea 197 (381)
T 3rlf_A 167 ----ALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197 (381)
T ss_dssp ----HHHHHHHHHHHHHHHHHCCEEEEECSCHHHH
T ss_pred ----HHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 2335577777888778899999999987654
No 40
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.09 E-value=1.2e-10 Score=98.40 Aligned_cols=143 Identities=12% Similarity=0.154 Sum_probs=83.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC----CHHHHHHHHH---hCCCCCcc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF----PTARLAQLCE---LSPLAKPK 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~----~~~~~~~~~~---~~~~~~~~ 121 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.... ....+.+.+. +...+...
T Consensus 39 vL~~v-sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 39 VLKGI-NVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114 (263)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT
T ss_pred EEEee-EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC
Confidence 34444 44789999999999999999999999998763 66778888775321 1122222111 11111111
Q ss_pred --ccCcEEEEe----cCCHHH----HHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccc
Q psy2198 122 --CSDKIFITH----CYEFID----LKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 122 --~~~~i~~~~----~~~~~~----l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
+.+++.+.. ..+..+ +.+.+.. ..+ .-.+|+++++|+.++-.+.
T Consensus 115 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~- 192 (263)
T 2olj_A 115 MTVLNNITLAPMKVRKWPREKAEAKAMELLDK-VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP- 192 (263)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH-
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-CCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH-
Confidence 222222210 111111 1111111 110 1158999999999985432
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++ +.+||+++|.....
T Consensus 193 ----------~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 193 ----------EMVGEVLSVMKQLANE-GMTMVVVTHEMGFA 222 (263)
T ss_dssp ----------HHHHHHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred ----------HHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH
Confidence 2335567777777665 99999999986654
No 41
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.05 E-value=2.9e-11 Score=101.97 Aligned_cols=49 Identities=22% Similarity=0.416 Sum_probs=40.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 22 vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~ 70 (257)
T 1g6h_A 22 ALDGV-SISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKD 70 (257)
T ss_dssp EEEEE-CCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEE
T ss_pred eEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEE
Confidence 45554 55789999999999999999999999998773 667888887754
No 42
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.04 E-value=8.3e-12 Score=109.58 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=83.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC------CCHH-HHHHHHHhCCCCCcc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV------FPTA-RLAQLCELSPLAKPK 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~------~~~~-~~~~~~~~~~~~~~~ 121 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.++++++.. .+.. +...++.+...+.+.
T Consensus 19 ~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ 94 (359)
T 3fvq_A 19 VLNDI-SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94 (359)
T ss_dssp EEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT
T ss_pred EEEee-EEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCC
Confidence 45554 45789999999999999999999999999874 6778888876532 1110 100111111111111
Q ss_pred --ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccc
Q psy2198 122 --CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYA 169 (279)
Q Consensus 122 --~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~ 169 (279)
+.+++.+.. .....+..+.+.+.+ .+ .-.+|+++++|+.++-.+.
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~--- 171 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDE--- 171 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH---
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH---
Confidence 222222210 001111111111111 10 1158999999999875432
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 170 EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 170 ~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.|+|+|+++|.....
T Consensus 172 --------~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 172 --------QLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred --------HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 2234455667777777899999999987654
No 43
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.04 E-value=7.1e-11 Score=103.95 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=84.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.... +..+ ...++.+...+.+. +.
T Consensus 18 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 18 ALNNI-NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred EEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 45544 44689999999999999999999999998874 67788888765431 1110 00011111111111 22
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+..+-.+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~------- 166 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA------- 166 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCH-------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH-------
Confidence 2222210 011111111111111 11 1158999999999875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.+.|+|+++|.....
T Consensus 167 ----~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 197 (362)
T 2it1_A 167 ----LLRLEVRAELKRLQKELGITTVYVTHDQAEA 197 (362)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred ----HHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 2335567777888777899999999986654
No 44
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.03 E-value=3.8e-11 Score=105.52 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=82.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC-------CCHH-HHHHHHHhCCCCCc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV-------FPTA-RLAQLCELSPLAKP 120 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~-------~~~~-~~~~~~~~~~~~~~ 120 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++... .+.. +...++.+...+.+
T Consensus 20 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~ 95 (353)
T 1oxx_K 20 ALDNV-NINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95 (353)
T ss_dssp EEEEE-EEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT
T ss_pred eEece-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCC
Confidence 34444 44689999999999999999999999998773 6677777766432 1110 00001111111111
Q ss_pred c--ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 121 K--CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 121 ~--~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
. +.+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+..+-.+..
T Consensus 96 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~- 174 (353)
T 1oxx_K 96 NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR- 174 (353)
T ss_dssp TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG-
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH-
Confidence 1 222222211 011111111111111 10 12589999999998754432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
...++...|+++.++.+.|+|+++|.....
T Consensus 175 ----------~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 175 ----------MRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (353)
T ss_dssp ----------GHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred ----------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 224466777777777899999999986654
No 45
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.02 E-value=7.7e-11 Score=104.11 Aligned_cols=145 Identities=16% Similarity=0.201 Sum_probs=83.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.... +..+ ...++.+...+.+. +.
T Consensus 26 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 26 AVNKL-NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred EEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 34444 44689999999999999999999999998874 67788888775431 1110 00011111111110 12
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+..+-.+.
T Consensus 102 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~------- 174 (372)
T 1v43_A 102 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA------- 174 (372)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH-------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH-------
Confidence 2221110 111121111111111 11 1158999999999875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.+.|+|+++|.....
T Consensus 175 ----~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 205 (372)
T 1v43_A 175 ----KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205 (372)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred ----HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 2335567777888777899999999986654
No 46
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.01 E-value=6.6e-11 Score=104.66 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=82.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--------CCHHH-HHHHHHhCCCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--------FPTAR-LAQLCELSPLAK 119 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--------~~~~~-~~~~~~~~~~~~ 119 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++... .+..+ ...++.+...+.
T Consensus 18 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 18 AVREM-SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp EEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred EEeee-EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 34444 44689999999999999999999999998874 6677777766432 11110 000111111111
Q ss_pred cc--ccCcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccc
Q psy2198 120 PK--CSDKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 120 ~~--~~~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
+. +.+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+..+-.+.
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~- 172 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA- 172 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH-
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH-
Confidence 10 222222110 011111111111111 10 1158999999999875432
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.+.|+|+++|.....
T Consensus 173 ----------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 203 (372)
T 1g29_1 173 ----------KLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203 (372)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 2334566777788777899999999986654
No 47
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.01 E-value=5.8e-10 Score=97.67 Aligned_cols=144 Identities=12% Similarity=0.138 Sum_probs=84.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.... +..+ ...++.+...+.+. +.
T Consensus 15 ~l~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 90 (348)
T 3d31_A 15 SLDNL-SLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (348)
T ss_dssp EEEEE-EEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEeee-EEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHH
Confidence 34443 44689999999999999999999999998874 67788888776432 1111 00011111111111 22
Q ss_pred CcEEEEe----cCCHHHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccchhhH
Q psy2198 124 DKIFITH----CYEFIDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDKYVQ 175 (279)
Q Consensus 124 ~~i~~~~----~~~~~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~~~ 175 (279)
+++.+.. ....+.+.+.+.. ..+ .-.+|+++++|+..+-.+.
T Consensus 91 enl~~~~~~~~~~~~~~v~~~l~~-~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~--------- 160 (348)
T 3d31_A 91 KNLEFGMRMKKIKDPKRVLDTARD-LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP--------- 160 (348)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHH-TTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-cCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH---------
Confidence 2222110 0011112222211 110 1258999999999875432
Q ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 176 ~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.+.|+|+++|.....
T Consensus 161 --~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 161 --RTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp --HHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred --HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2335567778888778899999999986553
No 48
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.00 E-value=6.6e-11 Score=104.04 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=83.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.... +..+ ...++.+...+.+. +.
T Consensus 18 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 18 AVDGV-SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp EEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred EEeee-EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 34444 44689999999999999999999999998873 67788888775431 1110 00011111111111 22
Q ss_pred CcEEEEec---CCHH----HHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccch
Q psy2198 124 DKIFITHC---YEFI----DLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAEDK 172 (279)
Q Consensus 124 ~~i~~~~~---~~~~----~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~ 172 (279)
+++.+... .+.. .+.+.+. ...+ .-.+|+++++|+..+-.+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~-~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~------ 166 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIAR-KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA------ 166 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHH-HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH------
Confidence 22222100 0001 1111111 1110 1258999999999875432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 173 ~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.+.|+|+++|.....
T Consensus 167 -----~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 197 (359)
T 2yyz_A 167 -----NLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197 (359)
T ss_dssp -----HHHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred -----HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 2335566777788777899999999986654
No 49
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.98 E-value=4.9e-11 Score=100.80 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=39.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 21 vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~ 69 (262)
T 1b0u_A 21 VLKGV-SLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQN 69 (262)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEE
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEE
Confidence 34444 44789999999999999999999999998763 667788887754
No 50
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.98 E-value=3.3e-10 Score=95.90 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=82.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCC-----CC-ccc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL-----AK-PKC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~-----~~-~~~ 122 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++.... ...+.+.+...+. +. ..+
T Consensus 22 vl~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~-~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 22 ALENV-SLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKK-GYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECC-HHHHGGGEEEECSSGGGGCCCSSH
T ss_pred eeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECc-hHHhhhhEEEEeccchhhcCCCcH
Confidence 35544 44789999999999999999999999998763 66777888765431 1111110000000 00 001
Q ss_pred cCcEEEE-----ec-CCHHHHHHHHHh-------hhcc------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 123 SDKIFIT-----HC-YEFIDLKRTLES-------QSGF------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 123 ~~~i~~~-----~~-~~~~~l~~~i~~-------~~~~------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
.+++.+. .. ...+.+.+.+.. .... ...+++++++|+.++-.+.
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~----- 171 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR----- 171 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH-----
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCH-----
Confidence 1222110 00 011111122211 0100 1268999999999985432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.....+.+.|++++++ +.|||+++|......
T Consensus 172 ------~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 172 ------EGKTDLLRIVEKWKTL-GKTVILISHDIETVI 202 (266)
T ss_dssp ------HHHHHHHHHHHHHHHT-TCEEEEECSCCTTTG
T ss_pred ------HHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 2335567777777765 999999999876554
No 51
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.97 E-value=3.7e-10 Score=99.10 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=83.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHH-HHHHHHhCCCCCcc--cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTAR-LAQLCELSPLAKPK--CS 123 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~-~~~~~~~~~~~~~~--~~ 123 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++.... +..+ ...++.+...+.+. +.
T Consensus 30 vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 30 SVRGV-SFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp CEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred EEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 45554 45789999999999999999999999998873 67788888765431 1100 00000111111110 12
Q ss_pred CcEEEEe---cCCHHHHHHHHHhhh---cc------------------------CCCCeeEEEEeCcchhhccccccchh
Q psy2198 124 DKIFITH---CYEFIDLKRTLESQS---GF------------------------IENKVGMIVIDSIAGIFRNTYAEDKY 173 (279)
Q Consensus 124 ~~i~~~~---~~~~~~l~~~i~~~~---~~------------------------~~~~~~lvvID~l~~~~~~~~~~~~~ 173 (279)
+++.+.. ..+..+..+.+.+.+ .+ ...+|+++++|+.++-.+.
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~------- 178 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT------- 178 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSH-------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH-------
Confidence 2221110 011111111111111 10 1158999999999875432
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 174 VQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 174 ~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
....++...|+++.++.+.|+|+++|.....
T Consensus 179 ----~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 179 ----QIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred ----HHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 2335567777888777899999999986654
No 52
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.97 E-value=8.5e-10 Score=92.32 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=40.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 24 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~ 72 (247)
T 2ff7_A 24 ILDNI-NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHD 72 (247)
T ss_dssp EEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEE
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEE
Confidence 35544 45789999999999999999999999998873 667888887754
No 53
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.96 E-value=1.3e-10 Score=100.02 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=40.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.|+.+ .--+++|++++|+||||||||||+..+++.+. +..|.+++++...
T Consensus 69 vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i 118 (306)
T 3nh6_A 69 TLQDV-SFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDI 118 (306)
T ss_dssp EEEEE-EEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEET
T ss_pred eeeee-eEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 45544 44789999999999999999999999998874 6778888887643
No 54
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.95 E-value=3.3e-10 Score=96.12 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=83.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ .--+++|++++|+||||||||||++.+++... +..|.+++++... .+...+.+.+. +...+.. .+
T Consensus 34 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 109 (271)
T 2ixe_A 34 VLQGL-TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109 (271)
T ss_dssp CEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBH
T ss_pred eeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccH
Confidence 35444 44789999999999999999999999998873 6677888877532 12222222111 1111111 12
Q ss_pred cCcEEEEe-cCCH-HHH---------HHHHHhh---h----c-----c-------------CCCCeeEEEEeCcchhhcc
Q psy2198 123 SDKIFITH-CYEF-IDL---------KRTLESQ---S----G-----F-------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 123 ~~~i~~~~-~~~~-~~l---------~~~i~~~---~----~-----~-------------~~~~~~lvvID~l~~~~~~ 166 (279)
.+++.+.. .... .++ .+.+... + . + .-.+++++++|+.++-.+.
T Consensus 110 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 189 (271)
T 2ixe_A 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189 (271)
T ss_dssp HHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred HHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 22222111 0010 111 1111111 0 0 0 1268999999999885432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.+||+++|.....
T Consensus 190 -----------~~~~~i~~~l~~~~~~~g~tviivtHd~~~~ 220 (271)
T 2ixe_A 190 -----------GNQLRVQRLLYESPEWASRTVLLITQQLSLA 220 (271)
T ss_dssp -----------HHHHHHHHHHHHCTTTTTSEEEEECSCHHHH
T ss_pred -----------HHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH
Confidence 2234567777777666699999999986544
No 55
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.95 E-value=8.6e-11 Score=98.87 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=39.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 30 vl~~v-sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~ 78 (256)
T 1vpl_A 30 ILKGI-SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKN 78 (256)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEE
T ss_pred EEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEE
Confidence 34444 44789999999999999999999999998763 667788887754
No 56
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.93 E-value=9.1e-09 Score=84.09 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=37.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++.
T Consensus 24 il~~v-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~ 71 (214)
T 1sgw_A 24 VLERI-TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGV 71 (214)
T ss_dssp EEEEE-EEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTE
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCE
Confidence 44444 44689999999999999999999999988763 56666666553
No 57
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.90 E-value=8e-10 Score=92.54 Aligned_cols=142 Identities=14% Similarity=0.205 Sum_probs=81.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc--c
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP--K 121 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~--~ 121 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +. |.+++++... .+...+.+.+. +...+.. .
T Consensus 15 vl~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 15 RLGPL-SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 45444 45789999999999999999999999988773 56 8777776532 12222222111 1111111 1
Q ss_pred ccCcEEEEec--CCHHHHHHHHHhhhcc------------------------CCCCee-------EEEEeCcchhhcccc
Q psy2198 122 CSDKIFITHC--YEFIDLKRTLESQSGF------------------------IENKVG-------MIVIDSIAGIFRNTY 168 (279)
Q Consensus 122 ~~~~i~~~~~--~~~~~l~~~i~~~~~~------------------------~~~~~~-------lvvID~l~~~~~~~~ 168 (279)
+.+++.+... .+.+.+.+.+.. ..+ ...+++ ++++|+.+.-.+.
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~-- 166 (249)
T 2qi9_C 90 VWHYLTLHQHDKTRTELLNDVAGA-LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV-- 166 (249)
T ss_dssp HHHHHHTTCSSTTCHHHHHHHHHH-TTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCH--
T ss_pred HHHHHHHhhccCCcHHHHHHHHHH-cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCH--
Confidence 2222221110 011222222221 110 013667 9999999985432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++ +.+||+++|.....
T Consensus 167 ---------~~~~~l~~~l~~l~~~-g~tviivtHd~~~~ 196 (249)
T 2qi9_C 167 ---------AQQSALDKILSALSQQ-GLAIVMSSHDLNHT 196 (249)
T ss_dssp ---------HHHHHHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred ---------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 2335577777777665 99999999987654
No 58
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.90 E-value=6.8e-10 Score=92.49 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=79.8
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc--------
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK-------- 121 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~-------- 121 (279)
|+.+ .--+++ ++++|.||||||||||++.+++... +..|.+++++......... ....++-++
T Consensus 15 l~~i-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~----~~~i~~v~q~~~l~~~l 85 (240)
T 2onk_A 15 RLNV-DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPE----RRGIGFVPQDYALFPHL 85 (240)
T ss_dssp EEEE-EEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTT----TSCCBCCCSSCCCCTTS
T ss_pred Eeee-EEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchh----hCcEEEEcCCCccCCCC
Confidence 4444 446889 9999999999999999999998873 6677788876532110000 011111111
Q ss_pred -ccCcEEEEec-CCH----HHHHHHHHhhhcc------------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 122 -CSDKIFITHC-YEF----IDLKRTLESQSGF------------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 122 -~~~~i~~~~~-~~~----~~l~~~i~~~~~~------------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
+.+++.+... ... +.+.+.+.. ..+ .-.+|+++++|+.++-.+.
T Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~----- 159 (240)
T 2onk_A 86 SVYRNIAYGLRNVERVERDRRVREMAEK-LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL----- 159 (240)
T ss_dssp CHHHHHHTTCTTSCHHHHHHHHHHHHHT-TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCH-----
T ss_pred cHHHHHHHHHHHcCCchHHHHHHHHHHH-cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH-----
Confidence 1122211100 010 111111111 110 1158999999999875432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|++++++.+.+||+++|.....
T Consensus 160 ------~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 160 ------KTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2335577777888777799999999976543
No 59
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.89 E-value=5.8e-11 Score=99.07 Aligned_cols=143 Identities=13% Similarity=0.184 Sum_probs=81.5
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHH-HH---HHHhCCCCCcc--
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARL-AQ---LCELSPLAKPK-- 121 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~-~~---~~~~~~~~~~~-- 121 (279)
|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++.... +.... .+ ++.+...+...
T Consensus 22 l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~lt 97 (240)
T 1ji0_A 22 IKGI-DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97 (240)
T ss_dssp EEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSB
T ss_pred Eeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCc
Confidence 4443 44689999999999999999999999998763 66788888775431 22211 11 11111111111
Q ss_pred ccCcEEEEe-----cCCHH-HHHHHHH------hhhcc------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 122 CSDKIFITH-----CYEFI-DLKRTLE------SQSGF------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 122 ~~~~i~~~~-----~~~~~-~l~~~i~------~~~~~------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
+.+++.+.. ..... .+.+.+. ..... ...+|+++++|+.++-.+.
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~----- 172 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAP----- 172 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH-----
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH-----
Confidence 222222211 01111 1111111 11100 1158999999999885432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++++ .+.+||+++|.....
T Consensus 173 ------~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~ 202 (240)
T 1ji0_A 173 ------ILVSEVFEVIQKINQ-EGTTILLVEQNALGA 202 (240)
T ss_dssp ------HHHHHHHHHHHHHHH-TTCCEEEEESCHHHH
T ss_pred ------HHHHHHHHHHHHHHH-CCCEEEEEecCHHHH
Confidence 223456677777765 699999999976543
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.88 E-value=1.3e-09 Score=86.08 Aligned_cols=59 Identities=3% Similarity=-0.017 Sum_probs=36.7
Q ss_pred CCCeeEEEEeCcchhhccccccc-----hhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 149 ENKVGMIVIDSIAGIFRNTYAED-----KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 149 ~~~~~lvvID~l~~~~~~~~~~~-----~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
..+++++++|+.+.........+ +..--......+.+.|+++.++ |.++|+++|.....
T Consensus 99 ~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 99 HCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp TCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred CCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 46899999999987654220000 0000111445666777777766 99999999976543
No 61
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.87 E-value=1.8e-10 Score=98.10 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=39.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++++..
T Consensus 36 vL~~i-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~ 84 (279)
T 2ihy_A 36 ILKKI-SWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBC
T ss_pred EEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEE
Confidence 34444 44789999999999999999999999998773 667888887764
No 62
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=96.89 Aligned_cols=50 Identities=26% Similarity=0.278 Sum_probs=40.7
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
..|+.+ +--+++|+++.|.||||||||||++.+++.. + ..|.+++++...
T Consensus 35 ~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~-~~G~I~i~G~~i 84 (390)
T 3gd7_A 35 AILENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---N-TEGEIQIDGVSW 84 (390)
T ss_dssp CSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTCS---E-EEEEEEESSCBT
T ss_pred EEeece-eEEEcCCCEEEEECCCCChHHHHHHHHhCCC---C-CCeEEEECCEEC
Confidence 455555 4578999999999999999999999999865 2 457888888754
No 63
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.85 E-value=1.2e-09 Score=91.83 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=76.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEE-------EEECCCC-CCHHHHHHHHHhCC----
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVL-------YICTESV-FPTARLAQLCELSP---- 116 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvl-------yi~~e~~-~~~~~~~~~~~~~~---- 116 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+ |+.-... ++...+...+....
T Consensus 20 vl~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 95 (253)
T 2nq2_C 20 LFQQL-NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHI 95 (253)
T ss_dssp EEEEE-EEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGS
T ss_pred EEEEE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhc
Confidence 35544 44689999999999999999999999998763 455533 3322211 10001111111000
Q ss_pred CC----Ccc-------ccCcEE-------EEecCCHHH--HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHH
Q psy2198 117 LA----KPK-------CSDKIF-------ITHCYEFID--LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQR 176 (279)
Q Consensus 117 ~~----~~~-------~~~~i~-------~~~~~~~~~--l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~ 176 (279)
+. ... ..+.+- .....+..+ .....+.+ ..+|+++++|+.++-.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL----~~~p~lllLDEPts~LD~---------- 161 (253)
T 2nq2_C 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAI----ASECKLILLDEPTSALDL---------- 161 (253)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH----HTTCSEEEESSSSTTSCH----------
T ss_pred ccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHH----HcCCCEEEEeCCcccCCH----------
Confidence 00 000 000000 001111111 11111121 258999999999885432
Q ss_pred HHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 177 AHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 177 ~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
.....+.+.|+++.++.+.+||+++|.....
T Consensus 162 -~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 162 -ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp -HHHHHHHHHHHHHHHTSCCEEEEEESCHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 2335567777777766699999999987654
No 64
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.81 E-value=7.5e-10 Score=92.86 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=38.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|.||||||||||++.+++.... .+..|.+++++..
T Consensus 18 vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~ 68 (250)
T 2d2e_A 18 ILKGV-NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY-TVERGEILLDGEN 68 (250)
T ss_dssp EEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEE
T ss_pred EEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCceEEEECCEE
Confidence 34443 446899999999999999999999999986211 2456778887754
No 65
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.79 E-value=7.6e-09 Score=97.03 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=40.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++.+
T Consensus 358 ~l~~i-~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~ 406 (582)
T 3b5x_A 358 ALSHV-SFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHD 406 (582)
T ss_pred ccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 34443 44789999999999999999999999999874 667788887754
No 66
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.75 E-value=4.4e-09 Score=98.66 Aligned_cols=144 Identities=10% Similarity=0.125 Sum_probs=84.0
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ +--+++|++++|+||+|||||||++.+++... +..|.+++++.+. .+...+++.+. +...+.. .+
T Consensus 358 ~l~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 433 (587)
T 3qf4_A 358 VLSGV-NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433 (587)
T ss_dssp SEEEE-EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEH
T ss_pred ceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccH
Confidence 34443 34689999999999999999999999988874 6778899988754 23333333221 1111111 12
Q ss_pred cCcEEEEec-CCHHHHHHHHHhh-----h---c--c------------------------CCCCeeEEEEeCcchhhccc
Q psy2198 123 SDKIFITHC-YEFIDLKRTLESQ-----S---G--F------------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 123 ~~~i~~~~~-~~~~~l~~~i~~~-----~---~--~------------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
.+|+.+... .+.+++.+.+... + + . .-.+++++++|+.++-.+..
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 333322211 2223332222110 0 0 0 11489999999999854321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
....+.+.|+++. .+.|+|+++|-.....
T Consensus 514 -----------~~~~i~~~l~~~~--~~~tvi~itH~l~~~~ 542 (587)
T 3qf4_A 514 -----------TEKRILDGLKRYT--KGCTTFIITQKIPTAL 542 (587)
T ss_dssp -----------HHHHHHHHHHHHS--TTCEEEEEESCHHHHT
T ss_pred -----------HHHHHHHHHHHhC--CCCEEEEEecChHHHH
Confidence 1234555566653 4899999999876554
No 67
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.74 E-value=5.4e-09 Score=88.08 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=38.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... + .|.+++++..
T Consensus 35 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~ 82 (260)
T 2ghi_A 35 TLKSI-NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKN 82 (260)
T ss_dssp SEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEE
T ss_pred eeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEE
Confidence 34444 44789999999999999999999999998763 3 5777777653
No 68
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.74 E-value=1.2e-09 Score=91.14 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=38.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ +--+++|++++|.||||||||||++.+++... +..|.+++++.
T Consensus 17 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~ 64 (243)
T 1mv5_A 17 ILRDI-SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQ 64 (243)
T ss_dssp SEEEE-EEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTE
T ss_pred eEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCE
Confidence 34444 44789999999999999999999999998763 56666777654
No 69
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.73 E-value=4.1e-09 Score=98.79 Aligned_cols=145 Identities=16% Similarity=0.168 Sum_probs=83.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ +--+++|++++|+||+|||||||++.+++... +..|.+++++.+. .+...+++.+. +...+.. .+
T Consensus 356 ~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv 431 (578)
T 4a82_A 356 ILKDI-NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431 (578)
T ss_dssp SEEEE-EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBH
T ss_pred ceeee-EEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccH
Confidence 34444 44689999999999999999999999888874 6778888887643 23332222111 1111111 13
Q ss_pred cCcEEEEec-CCHHHHHHHHHhh-----h---c-------------c-------------CCCCeeEEEEeCcchhhccc
Q psy2198 123 SDKIFITHC-YEFIDLKRTLESQ-----S---G-------------F-------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 123 ~~~i~~~~~-~~~~~l~~~i~~~-----~---~-------------~-------------~~~~~~lvvID~l~~~~~~~ 167 (279)
.+|+.+..+ .+.+++.+.+... + + + .-.+++++++|+.++-.+..
T Consensus 432 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 334333221 2223333332211 0 0 0 01478999999998854321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
. ...+.+.|+++. .+.|+|+++|-......
T Consensus 512 --------~---~~~i~~~l~~~~--~~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 512 --------S---ESIIQEALDVLS--KDRTTLIVAHRLSTITH 541 (578)
T ss_dssp --------H---HHHHHHHHHHHT--TTSEEEEECSSGGGTTT
T ss_pred --------H---HHHHHHHHHHHc--CCCEEEEEecCHHHHHc
Confidence 1 233455555553 47899999998776543
No 70
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.73 E-value=7.7e-09 Score=97.01 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=83.7
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++.+. .+...+++.+. +...+.. .+
T Consensus 358 ~l~~v-~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b60_A 358 ALRNI-NLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433 (582)
T ss_dssp SEEEE-EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBH
T ss_pred cccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCH
Confidence 34443 44789999999999999999999999998874 6778888887643 23333222111 1111111 12
Q ss_pred cCcEEEEe--cCCHHHHHHHHHhhh---------------------cc-------------CCCCeeEEEEeCcchhhcc
Q psy2198 123 SDKIFITH--CYEFIDLKRTLESQS---------------------GF-------------IENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 123 ~~~i~~~~--~~~~~~l~~~i~~~~---------------------~~-------------~~~~~~lvvID~l~~~~~~ 166 (279)
.+|+.+.. ..+.+++.+.+...- .+ .-.+++++++|+.++-.+.
T Consensus 434 ~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b60_A 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 33333221 122333333222110 00 0147899999999885432
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 167 TYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
. ....+.+.|+++. .+.|+|+++|......
T Consensus 514 ~-----------~~~~i~~~l~~~~--~~~tvi~itH~~~~~~ 543 (582)
T 3b60_A 514 E-----------SERAIQAALDELQ--KNRTSLVIAHRLSTIE 543 (582)
T ss_dssp H-----------HHHHHHHHHHHHH--TTSEEEEECSCGGGTT
T ss_pred H-----------HHHHHHHHHHHHh--CCCEEEEEeccHHHHH
Confidence 1 2234556666664 3899999999766543
No 71
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.71 E-value=4.9e-09 Score=98.60 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
--+++|++++|+||+|||||||++.+++... +..|.+++++.+.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i 419 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDI 419 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEG
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEh
Confidence 3689999999999999999999999998874 6778888877643
No 72
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.69 E-value=3.6e-09 Score=89.50 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=38.6
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|+.+ .--+++|++++|.||||||||||++.+++.... .+..|.+++++..
T Consensus 35 vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~ 85 (267)
T 2zu0_C 35 ILRGL-SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKD 85 (267)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEE
T ss_pred EEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEE
Confidence 34444 446899999999999999999999999987311 2456777777653
No 73
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.68 E-value=2.9e-08 Score=78.51 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=67.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLE 142 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~ 142 (279)
++.|+|++|||||+|+.+++.. ...++|+++...++.+...++...+.. ++ .....+..+.++.+. +.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~------~~~~~yiaT~~~~d~e~~~rI~~h~~~-R~--~~w~tiE~p~~l~~~---l~ 68 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD------APQVLYIATSQILDDEMAARIQHHKDG-RP--AHWRTAECWRHLDTL---IT 68 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS------CSSEEEEECCCC------CHHHHHHHT-SC--TTEEEECCSSCGGGT---SC
T ss_pred CEEEECCCCCcHHHHHHHHHhc------CCCeEEEecCCCCCHHHHHHHHHHHhc-CC--CCcEEEEcHhhHHHH---HH
Confidence 4789999999999999998743 123999999877665554444332211 11 122233333443332 21
Q ss_pred hhhccCCCCeeEEEEeCcchhhcccccc-----c----hhhH-HHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 143 SQSGFIENKVGMIVIDSIAGIFRNTYAE-----D----KYVQ-RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 143 ~~~~~~~~~~~lvvID~l~~~~~~~~~~-----~----~~~~-~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
+. ....+.|+||+++.+..+.+.. . .... ......++...+..+.+..+..|+++|++....
T Consensus 69 ~~----~~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsNEVG~Gi 140 (180)
T 1c9k_A 69 AD----LAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGI 140 (180)
T ss_dssp TT----SCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCCSSC
T ss_pred hh----cccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEccccCCC
Confidence 11 1123689999999987654321 1 0000 111223344445555555555666667765543
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.65 E-value=7.4e-08 Score=89.22 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=76.6
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEE--------EECCCCC-CHHHHHHHHHhC-CCC-Ccc----
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLY--------ICTESVF-PTARLAQLCELS-PLA-KPK---- 121 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvly--------i~~e~~~-~~~~~~~~~~~~-~~~-~~~---- 121 (279)
-+++|++++|+||||||||||++.+++... +..|.++ +.-.... ....+.+.+... ... ...
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 366 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF 366 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHH
Confidence 468999999999999999999999998763 4444332 2211110 000111111110 000 000
Q ss_pred --ccCcEE-------EEecCCHHHHH-HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy2198 122 --CSDKIF-------ITHCYEFIDLK-RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191 (279)
Q Consensus 122 --~~~~i~-------~~~~~~~~~l~-~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la 191 (279)
..+.+. .....+-.+.. -.+... ...+++++++|+.+.-.+. ....++.+.|++++
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAra---L~~~p~lLlLDEPT~gLD~-----------~~~~~i~~~l~~l~ 432 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAAT---LAKEADLYVLDQPSSYLDV-----------EERYIVAKAIKRVT 432 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHH---HHSCCSEEEEESTTTTCCH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHH---HHcCCCEEEEeCCccCCCH-----------HHHHHHHHHHHHHH
Confidence 111110 01122222221 122222 2258999999999985432 23456788888888
Q ss_pred HHcCcEEEEecccccccC
Q psy2198 192 IKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 192 ~~~~~~vi~v~h~~~~~~ 209 (279)
++.+.+||+++|......
T Consensus 433 ~~~g~tvi~vsHdl~~~~ 450 (538)
T 3ozx_A 433 RERKAVTFIIDHDLSIHD 450 (538)
T ss_dssp HHTTCEEEEECSCHHHHH
T ss_pred HhCCCEEEEEeCCHHHHH
Confidence 889999999999876554
No 75
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.63 E-value=8.1e-09 Score=87.08 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=34.6
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
|+.+ .--++ |++++|.||||||||||++.+++.. +..|.+++++.
T Consensus 21 l~~v-sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~ 65 (263)
T 2pjz_A 21 LENI-NLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGM 65 (263)
T ss_dssp EEEE-EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTE
T ss_pred EEee-eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCE
Confidence 4443 44689 9999999999999999999988765 34566666553
No 76
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.62 E-value=1.6e-08 Score=95.15 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=83.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++.+. .+...+++.+. +...+.. .+
T Consensus 359 vl~~i-sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 434 (595)
T 2yl4_A 359 IFQDF-SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 434 (595)
T ss_dssp EEEEE-EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBH
T ss_pred cccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCH
Confidence 34443 44789999999999999999999999998873 6778888887643 22332222111 1111111 12
Q ss_pred cCcEEEEec----CCHHHHHHHHHhhh--------c-------------c-------------CCCCeeEEEEeCcchhh
Q psy2198 123 SDKIFITHC----YEFIDLKRTLESQS--------G-------------F-------------IENKVGMIVIDSIAGIF 164 (279)
Q Consensus 123 ~~~i~~~~~----~~~~~l~~~i~~~~--------~-------------~-------------~~~~~~lvvID~l~~~~ 164 (279)
.+|+.+... .+.+++.+.+...- + + .-.+++++++|+.++-.
T Consensus 435 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~L 514 (595)
T 2yl4_A 435 AENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 514 (595)
T ss_dssp HHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSC
T ss_pred HHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCC
Confidence 333332211 23333333332110 0 0 01478999999998854
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 165 RNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
+.. ....+.+.|+++.+ +.|+|+++|.....
T Consensus 515 D~~-----------~~~~i~~~l~~~~~--~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 515 DAE-----------NEYLVQEALDRLMD--GRTVLVIAHRLSTI 545 (595)
T ss_dssp CHH-----------HHHHHHHHHHHHHT--TSEEEEECCCHHHH
T ss_pred CHH-----------HHHHHHHHHHHHhc--CCEEEEEecCHHHH
Confidence 321 22345566666654 78999999976543
No 77
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.61 E-value=6.7e-09 Score=105.67 Aligned_cols=161 Identities=11% Similarity=0.174 Sum_probs=97.2
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-ccCcEEE
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CSDKIFI 128 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~~~i~~ 128 (279)
+--+++|+.++|+|++|||||||+..+.+.+- +..|.+++|+.+. .+.+.+++.+. |.+.+... +.+|+.+
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~ 1175 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY 1175 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSS
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhc
Confidence 34799999999999999999999999998874 7778999988754 34444333221 11111111 3344433
Q ss_pred E---ecCCHHHHHHHHHhhh--------c--c------------------------CCCCeeEEEEeCcchhhccccccc
Q psy2198 129 T---HCYEFIDLKRTLESQS--------G--F------------------------IENKVGMIVIDSIAGIFRNTYAED 171 (279)
Q Consensus 129 ~---~~~~~~~l~~~i~~~~--------~--~------------------------~~~~~~lvvID~l~~~~~~~~~~~ 171 (279)
. ...+.+++.+.++..- + + .-.+++++++|+.++-.+.+
T Consensus 1176 gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~---- 1251 (1321)
T 4f4c_A 1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE---- 1251 (1321)
T ss_dssp SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSH----
T ss_pred cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHH----
Confidence 2 1234445544443210 0 0 00478899999988754422
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchhhhhhhhee
Q psy2198 172 KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRDL 231 (279)
Q Consensus 172 ~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~~~~~~rl~ 231 (279)
... .+.+.|+++. .++|+|+|+|=-+.... +.......|.+.+......++
T Consensus 1252 ----tE~---~Iq~~l~~~~--~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1252 ----SEK---VVQEALDRAR--EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp ----HHH---HHHHHHTTTS--SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHH
T ss_pred ----HHH---HHHHHHHHHc--CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 122 2344454433 58999999997666554 556666667777766665554
No 78
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.61 E-value=1.8e-08 Score=102.58 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=96.1
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCcc-cc
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKPK-CS 123 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~~-~~ 123 (279)
|+.+ +--+++|+.++|+||+|||||||+..+.+.+. +..|.+++++.+. .+.+.+++.+. |...+... +.
T Consensus 434 L~~i-sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 434 LRGM-NLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE 509 (1321)
T ss_dssp EEEE-EEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred eece-EEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence 4443 34799999999999999999999999998884 7788899887643 34444444332 11111111 44
Q ss_pred CcEEEEec-CCHHHHHHHHHhhh--------cc--------------------------CCCCeeEEEEeCcchhhcccc
Q psy2198 124 DKIFITHC-YEFIDLKRTLESQS--------GF--------------------------IENKVGMIVIDSIAGIFRNTY 168 (279)
Q Consensus 124 ~~i~~~~~-~~~~~l~~~i~~~~--------~~--------------------------~~~~~~lvvID~l~~~~~~~~ 168 (279)
+|+.+..+ .+.+++.+.++..- +. .-.+++++++|+.++-.+..
T Consensus 510 eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~- 588 (1321)
T 4f4c_A 510 ENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE- 588 (1321)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT-
T ss_pred HHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH-
Confidence 55544332 34445544443210 00 11589999999998865432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchh
Q psy2198 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYE 223 (279)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~ 223 (279)
.. ..+.+.|.++. .+.|+|+++|-.+.... +.......|.+.+
T Consensus 589 -------te---~~i~~~l~~~~--~~~T~iiiaHrls~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 589 -------SE---GIVQQALDKAA--KGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp -------TH---HHHHHHHHHHH--TTSEEEEECSCTTTTTTCSEEEEEETTEEEE
T ss_pred -------HH---HHHHHHHHHHh--CCCEEEEEcccHHHHHhCCEEEEeeCCeeec
Confidence 11 23445555554 58999999998776655 4444444555544
No 79
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.61 E-value=1e-08 Score=85.27 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=37.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.|+.+ +--+++|++++|+||||||||||++.+++... +..|.+++++
T Consensus 20 vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g 66 (237)
T 2cbz_A 20 TLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG 66 (237)
T ss_dssp SEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS
T ss_pred eeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC
Confidence 45544 45789999999999999999999999988763 5566666654
No 80
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.61 E-value=1e-07 Score=86.54 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=35.6
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP 104 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~ 104 (279)
-+.+|++++|+|+||||||||+..|++.+. +.+|.+++.+.+.+.
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTC
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccc
Confidence 367899999999999999999999999875 455655555555544
No 81
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.60 E-value=5.8e-07 Score=73.68 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=72.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDL 137 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 137 (279)
-.+|.++.++|++|+||||+++.++..+. .....++++...... .-..++ ....++. .+.+.+ .+..++
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d~--r~~~~i-~srlG~~---~~~~~~---~~~~~i 77 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKIDT--RSIRNI-QSRTGTS---LPSVEV---ESAPEI 77 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCCG--GGCSSC-CCCCCCS---SCCEEE---SSTHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccCc--hHHHHH-HHhcCCC---cccccc---CCHHHH
Confidence 35689999999999999999999998875 122238888655431 100011 1111111 122222 334566
Q ss_pred HHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 138 KRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 138 ~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
.+.+.+.. ....+++|+||+++.+.. ++++.+..+++ .+++||++.+.+.-
T Consensus 78 ~~~i~~~~--~~~~~dvViIDEaQ~l~~----------------~~ve~l~~L~~-~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 78 LNYIMSNS--FNDETKVIGIDEVQFFDD----------------RICEVANILAE-NGFVVIISGLDKNF 128 (223)
T ss_dssp HHHHHSTT--SCTTCCEEEECSGGGSCT----------------HHHHHHHHHHH-TTCEEEEECCSBCT
T ss_pred HHHHHHHh--hCCCCCEEEEecCccCcH----------------HHHHHHHHHHh-CCCeEEEEeccccc
Confidence 66665543 345689999999986311 13344455555 49999999997753
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.57 E-value=1.2e-07 Score=74.95 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=32.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e 100 (279)
.+++|+.+.|+||||+|||||+..++..+. +..| .++|++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIY--EKKGIRGYFFDTK 76 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHH--HHSCCCCCEEEHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHH--HHcCCeEEEEEHH
Confidence 567799999999999999999999998874 1222 36776654
No 83
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.6e-07 Score=85.71 Aligned_cols=136 Identities=16% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-------EEEEECCCC--CCHHHHHHHHH-hCCCCC--cc--
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-------VLYICTESV--FPTARLAQLCE-LSPLAK--PK-- 121 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-------vlyi~~e~~--~~~~~~~~~~~-~~~~~~--~~-- 121 (279)
|.+.+|++++|+||||||||||++.+++... +..| +-|+.-... ++.. +.+.+. ...... ..
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~~~~i~~~~q~~~~~~~~t-v~e~~~~~~~~~~~~~~~~ 448 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIPKLNVSMKPQKIAPKFPGT-VRQLFFKKIRGQFLNPQFQ 448 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCCSCCEEEECSSCCCCCCSB-HHHHHHHHCSSTTTSHHHH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCccCCcEEEecccccccCCcc-HHHHHHHHhhcccccHHHH
Confidence 5577789999999999999999999998763 3333 444432211 1111 111111 111100 00
Q ss_pred --ccCcE-------EEEecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy2198 122 --CSDKI-------FITHCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELS 191 (279)
Q Consensus 122 --~~~~i-------~~~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la 191 (279)
..+.+ ......+-.+... .+... ...+++++++|+.+.-.+. .....+.+.|++++
T Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAra---L~~~p~lLlLDEPT~gLD~-----------~~~~~i~~ll~~l~ 514 (608)
T 3j16_B 449 TDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLA---LGIPADIYLIDEPSAYLDS-----------EQRIICSKVIRRFI 514 (608)
T ss_dssp HHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHH---TTSCCSEEEECCTTTTCCH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHH---HHhCCCEEEEECCCCCCCH-----------HHHHHHHHHHHHHH
Confidence 00000 0111223222222 22222 2358999999999985432 23456778888888
Q ss_pred HHcCcEEEEecccccccC
Q psy2198 192 IKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 192 ~~~~~~vi~v~h~~~~~~ 209 (279)
++.|.|||+++|......
T Consensus 515 ~~~g~tviivtHdl~~~~ 532 (608)
T 3j16_B 515 LHNKKTAFIVEHDFIMAT 532 (608)
T ss_dssp HHHTCEEEEECSCHHHHH
T ss_pred HhCCCEEEEEeCCHHHHH
Confidence 778999999999876553
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.55 E-value=3.3e-07 Score=70.41 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESV 102 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~ 102 (279)
+|+.+.|+||+|+|||||++.++..+. +.| .++|++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL---EAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH---TTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEcHHHh
Confidence 899999999999999999999999875 222 2889887754
No 85
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.54 E-value=1.7e-07 Score=81.41 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
++|+++.|+|||||||||++..+++.+. +.+|.+++.+.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecc
Confidence 5799999999999999999999999875 4555444444444
No 86
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.51 E-value=5.5e-07 Score=84.51 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=75.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-------EEEEECCCCC----CHHHHHHHH-HhCCCCC---ccc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-------VLYICTESVF----PTARLAQLC-ELSPLAK---PKC 122 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-------vlyi~~e~~~----~~~~~~~~~-~~~~~~~---~~~ 122 (279)
+++|++++|.||||||||||++.+++... +..| +-|+.-+... +........ ....... .+.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 455 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 67999999999999999999999998763 3333 3344332211 111111000 0000000 000
Q ss_pred cCcEE-------EEecCCHHHHHH-HHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHc
Q psy2198 123 SDKIF-------ITHCYEFIDLKR-TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKH 194 (279)
Q Consensus 123 ~~~i~-------~~~~~~~~~l~~-~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~ 194 (279)
++.+. .....+-.+... .+... ...+++++++|+.+...+. .....+.+.|++++++.
T Consensus 456 l~~~~l~~~~~~~~~~LSGGe~QRv~iAra---L~~~p~lLlLDEPt~~LD~-----------~~~~~l~~~l~~l~~~~ 521 (607)
T 3bk7_A 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAAT---LLRDADIYLLDEPSAYLDV-----------EQRLAVSRAIRHLMEKN 521 (607)
T ss_dssp HHHHTCTTTTTSBGGGCCHHHHHHHHHHHH---HTSCCSEEEEECTTTTCCH-----------HHHHHHHHHHHHHHHHT
T ss_pred HHHcCCchHhcCChhhCCHHHHHHHHHHHH---HHhCCCEEEEeCCccCCCH-----------HHHHHHHHHHHHHHHhC
Confidence 00000 011223222222 22222 2258899999999985432 23456778888888778
Q ss_pred CcEEEEecccccccC
Q psy2198 195 RIVVICTNQVTSAMT 209 (279)
Q Consensus 195 ~~~vi~v~h~~~~~~ 209 (279)
+.+||+++|......
T Consensus 522 g~tvi~vsHd~~~~~ 536 (607)
T 3bk7_A 522 EKTALVVEHDVLMID 536 (607)
T ss_dssp TCEEEEECSCHHHHH
T ss_pred CCEEEEEeCCHHHHH
Confidence 999999999876543
No 87
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.50 E-value=1.1e-06 Score=77.17 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=64.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEe-cCCHH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITH-CYEFI 135 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ 135 (279)
..+|++++|+||+|||||||++.++..+. +..++ ++.+.....+. ... ....+.-.. .....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~~-------------~~~-~~~~v~q~~~~~~~~ 183 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEFV-------------HES-KKCLVNQREVHRDTL 183 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC-------------CCC-SSSEEEEEEBTTTBS
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHhh-------------hhc-cccceeeeeeccccC
Confidence 46788999999999999999999998874 22244 44443322110 000 000011111 11112
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.+...+...+ ..+|+++++|++... . .++.+.+++ +.|.+||++.|......
T Consensus 184 ~~~~~La~aL---~~~PdvillDEp~d~--------------e----~~~~~~~~~-~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 184 GFSEALRSAL---REDPDIILVGEMRDL--------------E----TIRLALTAA-ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CHHHHHHHHT---TSCCSEEEESCCCSH--------------H----HHHHHHHHH-HTTCEEEEEESCSSHHH
T ss_pred CHHHHHHHHh---hhCcCEEecCCCCCH--------------H----HHHHHHHHH-hcCCEEEEEEccChHHH
Confidence 2333444443 368999999999731 1 122233333 36999999999987653
No 88
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.50 E-value=8.7e-07 Score=82.15 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=76.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-------EEEEECCCCC----CHHHHHHHH-HhCCCCCc---cc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-------VLYICTESVF----PTARLAQLC-ELSPLAKP---KC 122 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-------vlyi~~e~~~----~~~~~~~~~-~~~~~~~~---~~ 122 (279)
+++|++++|+||||||||||++.+++... +..| +-|+.-+... +........ ........ +.
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 385 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL 385 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 57999999999999999999999998763 3333 3344333211 111110000 00000000 01
Q ss_pred cCcEEE-------EecCCHHHHH-HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHc
Q psy2198 123 SDKIFI-------THCYEFIDLK-RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKH 194 (279)
Q Consensus 123 ~~~i~~-------~~~~~~~~l~-~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~ 194 (279)
.+.+.+ ....+-.+.. -.+... ...+++++++|+.+.-.+. .....+.+.|++++++.
T Consensus 386 l~~~~l~~~~~~~~~~LSGGe~qrv~lAra---L~~~p~lLlLDEPt~~LD~-----------~~~~~i~~~l~~l~~~~ 451 (538)
T 1yqt_A 386 LKPLGIIDLYDREVNELSGGELQRVAIAAT---LLRDADIYLLDEPSAYLDV-----------EQRLAVSRAIRHLMEKN 451 (538)
T ss_dssp TTTTTCGGGTTSBGGGCCHHHHHHHHHHHH---HTSCCSEEEEECTTTTCCH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHcCChhhhcCChhhCCHHHHHHHHHHHH---HHhCCCEEEEeCCcccCCH-----------HHHHHHHHHHHHHHHhC
Confidence 111111 1122322222 222222 2258899999999985432 23456778888888778
Q ss_pred CcEEEEecccccccC
Q psy2198 195 RIVVICTNQVTSAMT 209 (279)
Q Consensus 195 ~~~vi~v~h~~~~~~ 209 (279)
+.+||+++|......
T Consensus 452 g~tvi~vsHd~~~~~ 466 (538)
T 1yqt_A 452 EKTALVVEHDVLMID 466 (538)
T ss_dssp TCEEEEECSCHHHHH
T ss_pred CCEEEEEeCCHHHHH
Confidence 999999999876553
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.49 E-value=2e-06 Score=72.28 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=36.6
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CeEEEEECC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH-KGVLYICTE 100 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~-~gvlyi~~e 100 (279)
+.|+.+ . +++|++++|+||+||||||+++.+++.+. +. .|.+++.+.
T Consensus 15 ~vl~~i-~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~ 62 (261)
T 2eyu_A 15 DKVLEL-C--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIED 62 (261)
T ss_dssp THHHHG-G--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEES
T ss_pred HHHHHH-h--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCC
Confidence 467776 3 89999999999999999999999998874 33 455555443
No 90
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.49 E-value=3.4e-08 Score=100.32 Aligned_cols=158 Identities=14% Similarity=0.206 Sum_probs=90.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC--CCHHHHHHHHH---hCCCCCc-cc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCE---LSPLAKP-KC 122 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~--~~~~~~~~~~~---~~~~~~~-~~ 122 (279)
.|+.+ .--+++|+.++|+||+|||||||+..+++.+. +..|.+++++.+. .+...+++.+. +...+.. .+
T Consensus 405 vL~~i-sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti 480 (1284)
T 3g5u_A 405 ILKGL-NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480 (1284)
T ss_dssp SEEEE-EEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCH
T ss_pred ceecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccH
Confidence 35444 44789999999999999999999999988874 6778888887643 33333333222 1111111 13
Q ss_pred cCcEEEEec-CCHHHHHHHHHhhh--------c--c------------------------CCCCeeEEEEeCcchhhccc
Q psy2198 123 SDKIFITHC-YEFIDLKRTLESQS--------G--F------------------------IENKVGMIVIDSIAGIFRNT 167 (279)
Q Consensus 123 ~~~i~~~~~-~~~~~l~~~i~~~~--------~--~------------------------~~~~~~lvvID~l~~~~~~~ 167 (279)
.+|+.+..+ .+.+++.+.+.... + . .-.+++++++|+.++..+..
T Consensus 481 ~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 481 AENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560 (1284)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 334433221 23333333322110 0 0 01378999999998865321
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC-CCCccCccccchh
Q psy2198 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH-SDKNIPALGLTYE 223 (279)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~-~~~~~~~~g~~~~ 223 (279)
... .+.+.|+++. .++|+|+++|-...... +.......|.+.+
T Consensus 561 --------~~~---~i~~~l~~~~--~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 561 --------SEA---VVQAALDKAR--EGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp --------HHH---HHHHHHHHHH--TTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred --------HHH---HHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 122 3344444443 58999999998766544 3334444454443
No 91
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.46 E-value=6.2e-07 Score=77.11 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF 103 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~ 103 (279)
+|+++.|+||+||||||++..+++.+. +.+|.+++.+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCC
Confidence 689999999999999999999999885 55665556665543
No 92
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.44 E-value=9.2e-07 Score=71.61 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.0
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-+++|++++|+||||||||||++.+++..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999999999876
No 93
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.2e-06 Score=77.71 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=74.1
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|+++..-++++||||||||++|..+|..... ..+++++..... .+ . ..+...
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l~s------------k~----v-------Gese~~ 229 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDC-----KFIRVSGAELVQ------------KY----I-------GEGSRM 229 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-----EEEEEEGGGGSC------------SS----T-------THHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-----CceEEEhHHhhc------------cc----c-------chHHHH
Confidence 7888778999999999999999999988742 256666543210 00 0 001122
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccch--hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDK--YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+.+.+... ....|.+++||++.++......+.. .....+.+..++..|..+....++.||.++.-....+
T Consensus 230 vr~lF~~A---r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 230 VRELFVMA---REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HHHHHHHH---HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HHHHHHHH---HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 22333322 2346799999999998754322221 1123445566777776666666777777665544444
No 94
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.41 E-value=3.4e-07 Score=84.85 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=30.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|+.+ . -+.+|++++|+||||||||||++.+++...
T Consensus 37 ~l~~v-s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 37 VLYRL-P-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cccCc-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45554 5 689999999999999999999999998763
No 95
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.39 E-value=1.1e-06 Score=75.53 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=36.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT 105 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~ 105 (279)
+.+|++++|+||+||||||++..+++.+. +.+|.+++.+.+.+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~ 141 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRA 141 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccch
Confidence 57899999999999999999999999885 4566566666666543
No 96
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.38 E-value=1.5e-07 Score=87.08 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=26.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
-.++|++++|+||||||||||++.+++...
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456899999999999999999999998763
No 97
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=8.9e-07 Score=79.51 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=71.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
.|+++..-++++||||||||+++..+|..... ..+.+++..... ... ..+..
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l~~---------~~v--------------Gese~ 261 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNA-----TFLKLAAPQLVQ---------MYI--------------GEGAK 261 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGCS---------SCS--------------SHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----CEEEEehhhhhh---------ccc--------------chHHH
Confidence 37888888999999999999999999988742 255565543210 000 00111
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhh--HHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYV--QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.+...+... ....|.+++||++..++.....+.... .....+..++..|..+....++.||.++.-....+.
T Consensus 262 ~ir~lF~~A---~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~ 335 (434)
T 4b4t_M 262 LVRDAFALA---KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDP 335 (434)
T ss_dssp HHHHHHHHH---HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCT
T ss_pred HHHHHHHHH---HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCH
Confidence 122222222 223679999999999875443222211 122344455555555555567778776655555543
No 98
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.36 E-value=1.3e-06 Score=76.66 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=36.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT 105 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~ 105 (279)
+.+|+++.|+|||||||||++..+++.+. +.+|.+++.+.+.+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~ 198 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRA 198 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEeccccccc
Confidence 57899999999999999999999999885 4566566666666553
No 99
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.34 E-value=1.6e-06 Score=75.45 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
-+++|++++|+||+|||||||+..+++.+. +..|.+++++..... .. .....+.+... .-..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~-------------~~-~~~~~i~~~~g-gg~~ 228 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIV-------------FK-HHKNYTQLFFG-GNIT 228 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCC-------------CS-SCSSEEEEECB-TTBC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccc-------------cc-cchhEEEEEeC-CChh
Confidence 457899999999999999999999998873 567788887754321 00 01122222211 1112
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
....+... ...+|+++++|+++.. . +...|+.+.. .+.++|++.|....
T Consensus 229 ~r~~la~a---L~~~p~ilildE~~~~---------------e---~~~~l~~~~~-g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 229 SADCLKSC---LRMRPDRIILGELRSS---------------E---AYDFYNVLCS-GHKGTLTTLHAGSS 277 (330)
T ss_dssp HHHHHHHH---TTSCCSEEEECCCCST---------------H---HHHHHHHHHT-TCCCEEEEEECSSH
T ss_pred HHHHHHHH---hhhCCCEEEEcCCChH---------------H---HHHHHHHHhc-CCCEEEEEEcccHH
Confidence 22233332 2358899999998751 1 2234554442 34578888887653
No 100
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1e-06 Score=79.00 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=75.1
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|+++..-++++||||||||+++..+|.... ...+.+++..... .+ . ..+...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l~~------------~~----~-------Ge~e~~ 253 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNGSEFVH------------KY----L-------GEGPRM 253 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGTCC------------SS----C-------SHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecchhhc------------cc----c-------chhHHH
Confidence 788888899999999999999999998873 2256666554311 00 0 001122
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccc--hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAED--KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+...+... ....|.+++||++..+........ ......+.+.+++..+..+....++.||+++.-....+
T Consensus 254 ir~lF~~A---~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 254 VRDVFRLA---RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HHHHHHHH---HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred HHHHHHHH---HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 22333322 224679999999999875432211 11123445667777777776667777877765544444
No 101
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.33 E-value=1.2e-07 Score=96.26 Aligned_cols=141 Identities=15% Similarity=0.236 Sum_probs=81.6
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC--CHHHHHHHHHhCCCCCcc------
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF--PTARLAQLCELSPLAKPK------ 121 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~--~~~~~~~~~~~~~~~~~~------ 121 (279)
|+.+ .--+++|+.++|+||+|||||||+..+++... +..|.+++++.+.. +...+ ....++-++
T Consensus 1049 l~~v-sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~ 1120 (1284)
T 3g5u_A 1049 LQGL-SLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL----RAQLGIVSQEPILFD 1120 (1284)
T ss_dssp BSSC-CEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH----TTSCEEEESSCCCCS
T ss_pred ecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH----HhceEEECCCCcccc
Confidence 4433 34789999999999999999999999998874 77889999887642 22221 112222111
Q ss_pred --ccCcEEEEec---CCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccc--cchhhHHHHHHHHHHHHHHHHHHHc
Q psy2198 122 --CSDKIFITHC---YEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYA--EDKYVQRAHDMRDLAHYLHELSIKH 194 (279)
Q Consensus 122 --~~~~i~~~~~---~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~la~~~ 194 (279)
+.+|+.+... .+.+++.+.+.... .. + +++.+..-+..... +...+..++|.-.++++|- .
T Consensus 1121 ~ti~eNi~~~~~~~~~~~~~i~~~~~~~~-~~----~--~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~-----~ 1188 (1284)
T 3g5u_A 1121 CSIAENIAYGDNSRVVSYEEIVRAAKEAN-IH----Q--FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV-----R 1188 (1284)
T ss_dssp SBHHHHHTCCCSSCCCCHHHHHHHHHHHT-CH----H--HHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH-----H
T ss_pred ccHHHHHhccCCCCCCCHHHHHHHHHHhC-cH----H--HHHhCccccccccCCCCCccCHHHHHHHHHHHHHH-----c
Confidence 3334433221 23445554443321 00 0 12222221211111 1122335677777888887 5
Q ss_pred CcEEEEecccccccCC
Q psy2198 195 RIVVICTNQVTSAMTH 210 (279)
Q Consensus 195 ~~~vi~v~h~~~~~~~ 210 (279)
+..+++.+++++..+.
T Consensus 1189 ~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDT 1204 (1284)
T ss_dssp CCSSEEEESCSSSCCH
T ss_pred CCCEEEEeCCcccCCH
Confidence 8889999999988874
No 102
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.6e-06 Score=76.58 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=72.1
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
.|+++..-++++||||||||+|+..+|..... ..+++++....+ .+ . ..+..
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~~~~v~~s~l~s------------k~----~-------Gese~ 261 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----NFIFSPASGIVD------------KY----I-------GESAR 261 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGTCC------------SS----S-------SHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehhhhcc------------cc----c-------hHHHH
Confidence 37888888999999999999999999988742 256666543311 00 0 00111
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccch--hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDK--YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.+...+... ....+.+++||++..++.....+.. .......+..++..+..+....++.||+++.-....+.
T Consensus 262 ~ir~~F~~A---~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 262 IIREMFAYA---KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp HHHHHHHHH---HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred HHHHHHHHH---HhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 222222222 2357899999999988754322211 11123344555555555544456777776554444443
No 103
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.32 E-value=3.1e-07 Score=86.18 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=30.3
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|+.+ . -+++|++++|+||||||||||++.+++...
T Consensus 107 ~l~~v-s-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 107 VLYRL-P-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeCCC-C-CCCCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 34444 4 579999999999999999999999998763
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.30 E-value=7.1e-07 Score=83.71 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=27.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
-+++|++++|.||||||||||++.+++...
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 467899999999999999999999998763
No 105
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.1e-06 Score=75.42 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=72.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
.|+++..-++++||||||||+||..+|..... ..+.+++.+... .+ . ..+..
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-----~fi~v~~s~l~s------------k~----v-------Gesek 262 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-----TFLRIVGSELIQ------------KY----L-------GDGPR 262 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-----EEEEEESGGGCC------------SS----S-------SHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCC-----CEEEEEHHHhhh------------cc----C-------chHHH
Confidence 37888888999999999999999999988742 255555543210 00 0 00111
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccch--hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDK--YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
.+...+... ....+.+++||++.+++.....+.. .....+.+..++..+..+....++.||.++.-....+.
T Consensus 263 ~ir~lF~~A---r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 263 LCRQIFKVA---GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp HHHHHHHHH---HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred HHHHHHHHH---HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 222222222 2346799999999988754322211 11133445556666665555556777776655555553
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.26 E-value=8.6e-06 Score=71.82 Aligned_cols=120 Identities=12% Similarity=0.061 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCCCCCHH-HHHHHHHhCCCCCccccCcEEEEecCCHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTESVFPTA-RLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRT 140 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 140 (279)
.+.|+||+|+|||+++..++.... .. ...++|+++....+.. .+..+.... +... . ....+..++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l~~~l-~~~~--~-----~~~~~~~~~~~~ 115 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEIARSL-NIPF--P-----RRGLSRDEFLAL 115 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHHHHHT-TCCC--C-----SSCCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCCCHHHHHHHHHHHh-CccC--C-----CCCCCHHHHHHH
Confidence 899999999999999999998874 12 2358999876554433 333333322 1110 0 012244555555
Q ss_pred HHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHH--HcCcEEEEecccc
Q psy2198 141 LESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSI--KHRIVVICTNQVT 205 (279)
Q Consensus 141 i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~--~~~~~vi~v~h~~ 205 (279)
+..... ...++.+++||++..+ . ...+..+.+.+..+.. ..++.+|++++..
T Consensus 116 l~~~l~-~~~~~~vlilDE~~~l-~-----------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 116 LVEHLR-ERDLYMFLVLDDAFNL-A-----------PDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHH-HTTCCEEEEEETGGGS-C-----------HHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHh-hcCCeEEEEEECcccc-c-----------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 444432 2345789999999875 1 1123334444443332 1588888886654
No 107
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.4e-06 Score=76.84 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=70.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|+++..-++++||||||||+|++.+|..... ..+.+++..... .. . ..+...
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L~s---------k~--v------------Gesek~ 290 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSELVQ---------KY--V------------GEGARM 290 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGCC---------CS--S------------SHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHhhc---------cc--C------------CHHHHH
Confidence 7888888999999999999999999988742 255565543210 00 0 001112
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccch--hhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDK--YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+...+... ....+.+++||++..++........ .......+..++..|..+....++.||.++.-....+
T Consensus 291 ir~lF~~A---r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD 362 (467)
T 4b4t_H 291 VRELFEMA---RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD 362 (467)
T ss_dssp HHHHHHHH---HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC
T ss_pred HHHHHHHH---HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC
Confidence 22233322 2346799999999998754322211 1122334444555555444455667777655444444
No 108
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.22 E-value=3.3e-06 Score=80.43 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=24.9
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHH
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLC 78 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~ 78 (279)
.|+.+ +--+++|++++|+||||||||||+
T Consensus 33 ~L~~v-sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNI-DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSE-EEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceecc-EEEECCCCEEEEECCCCCCHHHHh
Confidence 45555 457899999999999999999997
No 109
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.21 E-value=7.6e-06 Score=70.33 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=33.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
..+|+++.|+|++|+||||++..+++.+. +..+.+++++.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcccc
Confidence 35789999999999999999999999885 2333477777653
No 110
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.20 E-value=2.5e-06 Score=74.67 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=48.7
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
-...+.||+..+|.+| -+.+|+.++|.|+||+|||||+..+++... +..+++.+.++.
T Consensus 51 l~~~~~tg~~ald~ll--~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~ 108 (347)
T 2obl_A 51 IDQPFILGVRAIDGLL--TCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGER 108 (347)
T ss_dssp CCSEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCC
T ss_pred cceecCCCCEEEEeee--eecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEeccc
Confidence 3456778999999995 699999999999999999999999999874 556677777764
No 111
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=8.6e-06 Score=68.94 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=65.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|+.++.-+.|+||||+|||++++.++.... ...+++....... .+ . ......
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~~~~------------~~----~-------~~~~~~ 98 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVGSELVK------------KF----I-------GEGASL 98 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEGGGGCC------------CS----T-------THHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehHHHHH------------hc----c-------chHHHH
Confidence 567778899999999999999999987752 2366666543210 00 0 000111
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccc--hhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAED--KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+...+... ....+.+++||++..+........ ........+..++..+..+....++.+|++++.....+
T Consensus 99 ~~~~~~~~---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 99 VKDIFKLA---KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp HHHHHHHH---HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred HHHHHHHH---HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 22222222 224568999999998764322111 01112223333333333223334677777776554443
No 112
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.19 E-value=1.7e-05 Score=68.61 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=64.9
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCH
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEF 134 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (279)
.|+..+..-+.|+||||+|||++++.++... .....+++++..... . .. ....
T Consensus 39 ~~~~~~~~~iLL~GppGtGKT~la~ala~~~----~~~~~~~i~~~~l~~------------~----~~-------g~~~ 91 (322)
T 1xwi_A 39 TGKRTPWRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVS------------K----WL-------GESE 91 (322)
T ss_dssp CTTCCCCSEEEEESSSSSCHHHHHHHHHHHT----TSCEEEEEECCSSCC------------S----SC-------CSCH
T ss_pred hCCCCCCceEEEECCCCccHHHHHHHHHHHc----CCCcEEEEEhHHHHh------------h----hh-------hHHH
Confidence 3456677789999999999999999999876 223467777654310 0 00 0111
Q ss_pred HHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHH-HcCcEEEEeccc
Q psy2198 135 IDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSI-KHRIVVICTNQV 204 (279)
Q Consensus 135 ~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~-~~~~~vi~v~h~ 204 (279)
..+...+... ....+.+++||++..+.......... ...+...+++..+..+.. ..++.||.++..
T Consensus 92 ~~~~~lf~~a---~~~~~~vl~iDEid~l~~~~~~~~~~-~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 92 KLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESE-AARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp HHHHHHHHHH---HHTSSEEEEEETTTGGGCCSSSCCTT-HHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHHHHHHHHH---HhcCCcEEEeecHHHhccccccccch-HHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 2222233222 22467899999999876432221111 122233444444443321 245566655543
No 113
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.17 E-value=3.1e-06 Score=76.40 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=48.4
Q ss_pred CceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
...+.||...||.+| -+.+|+.+.|+||||||||||+..+++... +..|++.+.++.
T Consensus 138 ~~~~~tg~~vld~vl--~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r 194 (438)
T 2dpy_A 138 EHVLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGER 194 (438)
T ss_dssp CSBCCCSCHHHHHHS--CCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCC
T ss_pred ceecCCCceEEeeeE--EecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEecee
Confidence 345667899999985 699999999999999999999999999874 566788888874
No 114
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.16 E-value=8.9e-07 Score=73.01 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=36.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~ 98 (279)
.|+.+ .--+++|++++|.||||||||||++.+++... +..|.++++
T Consensus 23 il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~ 68 (229)
T 2pze_A 23 VLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHS 68 (229)
T ss_dssp SEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEEC
T ss_pred eeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEEC
Confidence 45544 45789999999999999999999999998763 556655544
No 115
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.13 E-value=7.7e-06 Score=79.91 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=25.7
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+++|++++|+||||+|||||++.++...
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 46789999999999999999999987654
No 116
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.13 E-value=5.2e-06 Score=73.00 Aligned_cols=129 Identities=22% Similarity=0.162 Sum_probs=68.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCCCCCHHH-HHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTESVFPTAR-LAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
..+..+.|+||+|+|||+|+..++........ ...++|+++....+... +..+.. ..+.. .. ....+..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~-~l~~~--~~-----~~~~~~~~ 114 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE-SLDVK--VP-----FTGLSIAE 114 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT-TTSCC--CC-----SSSCCHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH-HhCCC--CC-----CCCCCHHH
Confidence 45779999999999999999999987631101 33588888653323222 222222 11110 00 01223455
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
+...+.+... ....+.+++||++..+..... ...+..+.+.+..+ ...++.+|++++..
T Consensus 115 ~~~~l~~~l~-~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~-~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 115 LYRRLVKAVR-DYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEV-NKSKISFIGITNDV 173 (386)
T ss_dssp HHHHHHHHHH-TCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSC-CC--EEEEEEESCG
T ss_pred HHHHHHHHHh-ccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhc-CCCeEEEEEEECCC
Confidence 5555544432 234478999999987643210 01222233333211 34578888887754
No 117
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.11 E-value=6.9e-06 Score=78.22 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=34.1
Q ss_pred CeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 151 KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+|+++++|+.+.-.+. ....++.+.|+++.+ .|.|||+++|......
T Consensus 564 ~p~llllDEPt~~LD~-----------~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~~~ 610 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHV-----------DDIARLLDVLHRLVD-NGDTVLVIEHNLDVIK 610 (670)
T ss_dssp SCEEEEEESTTTTCCH-----------HHHHHHHHHHHHHHH-TTCEEEEECCCHHHHT
T ss_pred CCcEEEEeCCCCCCCH-----------HHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence 5689999999985432 233556677777765 4999999999876543
No 118
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=2e-05 Score=68.74 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=23.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
+.|+||+|+||||+++.++..+. .+..|.+++++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~--~~~~g~i~~~~~ 73 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF--GPGVYRLKIDVR 73 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS--CTTCCC------
T ss_pred EEEECCCCCCHHHHHHHHHHHHc--CCCCCeEEecce
Confidence 89999999999999999999653 234455555543
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.10 E-value=9.2e-06 Score=71.82 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=31.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEEC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICT 99 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~ 99 (279)
+++|++++|+||+||||||++..++..+. +. .+.++++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~ 173 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIED 173 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEES
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecc
Confidence 67899999999999999999999999874 22 344555553
No 120
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.09 E-value=5.3e-06 Score=71.02 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=44.2
Q ss_pred eccCChhhhhhhCCCccC-------CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 43 VSTGSEKFDSILKGGIHA-------GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 43 i~tg~~~LD~~L~gGl~~-------G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
+......|...++++..+ +.++.++|++|+||||++..++..+. ...+.+++++....
T Consensus 73 ~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 73 IKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCC
Confidence 455667777777655333 88999999999999999999999885 23344888887743
No 121
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.06 E-value=6.7e-06 Score=70.50 Aligned_cols=121 Identities=14% Similarity=0.207 Sum_probs=67.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|++++..+.|+||||+|||++++.++.... .+.+++++... ...+... ....
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~~~l-----~~~~~g~------------------~~~~ 96 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPEL-----LTMWFGE------------------SEAN 96 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECHHHH-----HHHHHTT------------------CTTH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEhHHH-----HhhhcCc------------------hHHH
Confidence 688899999999999999999999988752 34566544211 1111111 0111
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhcccccc--chhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAE--DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
+...+... ....+.+++||++..+....... .......+.+.++++.+..+....++.||.+++.....
T Consensus 97 ~~~~f~~a---~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 97 VREIFDKA---RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHH---HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHH---HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 22223322 12356899999999875421100 00000112334455555544444577788777655433
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.06 E-value=1.9e-06 Score=66.83 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=27.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-+++|+++.|.||+|||||||++.+++..
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999999999999999999886
No 123
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.06 E-value=9.7e-06 Score=79.42 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=35.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
+--+.+|++++|.||||||||||++.+++... +..|.+++..
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~ 734 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHE 734 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcC
Confidence 34689999999999999999999999998773 6677777754
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.05 E-value=1.4e-06 Score=76.89 Aligned_cols=145 Identities=11% Similarity=0.077 Sum_probs=73.8
Q ss_pred hCCCccC--CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC----eEEEEE----CCC-CCCH---HHHHHHHHhCCCCC
Q psy2198 54 LKGGIHA--GGITELSGASGCGKTQLCLQMCLSLQVSQPHK----GVLYIC----TES-VFPT---ARLAQLCELSPLAK 119 (279)
Q Consensus 54 L~gGl~~--G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~----gvlyi~----~e~-~~~~---~~~~~~~~~~~~~~ 119 (279)
+.--+.+ |+.++|+|+||||||||+..+++.+. +.. |.+|+. +.. ..+. ..+....+....+.
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA 237 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence 3456778 99999999999999999999999874 333 334432 211 1111 11111111100001
Q ss_pred ccccCcEEEEecCCHHH-HHHH---------HHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHH
Q psy2198 120 PKCSDKIFITHCYEFID-LKRT---------LESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHE 189 (279)
Q Consensus 120 ~~~~~~i~~~~~~~~~~-l~~~---------i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 189 (279)
....+++.+........ .... +.... ...+++++++|+...-+... +...+....+...+.+.|++
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lllLdE~~~p~~~~--g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMI--KEYPFDVTILLKNNTEWVDD--GLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHH--HHSCCSEEEEEECCCC-------------CCSHHHHHHHHHH
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHH--hhcCCCEEEECCCCCCcccC--CCcCCccHHHHHHHHHHHHH
Confidence 11456666544221111 1111 11110 12467888988522111000 00000012334567888888
Q ss_pred HHHHcCcEEEEecccc
Q psy2198 190 LSIKHRIVVICTNQVT 205 (279)
Q Consensus 190 la~~~~~~vi~v~h~~ 205 (279)
+.++.+.++++++|.+
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 8877899999998874
No 125
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.03 E-value=2.7e-05 Score=61.83 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
+|.++.++|++|+||||++..++..+. .....++++...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~--~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK--LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH--HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeec
Confidence 478999999999999999998887764 123347776544
No 126
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.03 E-value=5.6e-06 Score=74.10 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=29.9
Q ss_pred CChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 46 GSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 46 g~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++..|+.+ .--+.+| +++|+|+||+|||||+..+....
T Consensus 47 nf~~l~~v-~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 47 NLATITQL-ELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EETTEEEE-EEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cccceeeE-EEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 44455544 3468899 99999999999999999887655
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.02 E-value=3.8e-06 Score=66.73 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=31.7
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
++++|+++.|.|+|||||||++..++.. ...|.+++++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEccc
Confidence 4789999999999999999999999875 23456777765
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.01 E-value=4.2e-05 Score=67.20 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=57.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEECCCCCCHHH-HHHHHHhCCCCCccccCcEEEEecCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQ----PHKGVLYICTESVFPTAR-LAQLCELSPLAKPKCSDKIFITHCYE 133 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~----~~~gvlyi~~e~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (279)
..+..+.|+||+|+|||+++..++....... ....++|+++....+... +..+.... +... . ....+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l-~~~~--~-----~~~~~ 113 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAV-GVRV--P-----FTGLS 113 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHH-SCCC--C-----SSCCC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHh-CCCC--C-----CCCCC
Confidence 4567899999999999999999998763100 023488888776544332 23333321 1100 0 01223
Q ss_pred HHHHHHHHHhhhccCCCCeeEEEEeCcchhh
Q psy2198 134 FIDLKRTLESQSGFIENKVGMIVIDSIAGIF 164 (279)
Q Consensus 134 ~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~ 164 (279)
..++...+.+... ...++.+++||++..+.
T Consensus 114 ~~~~~~~l~~~l~-~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 114 VGEVYERLVKRLS-RLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHHHHHT-TSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHHHHHh-ccCCeEEEEEccHhhhc
Confidence 4555555554442 33457899999998763
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.01 E-value=1.6e-05 Score=65.01 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.+..+.|+||+|+|||+++..++..... ....++|++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHH
Confidence 6789999999999999999999987741 223478887654
No 130
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.01 E-value=4.9e-05 Score=63.33 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=60.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLE 142 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~ 142 (279)
-+.|+||||+||||+++.++.... ...+++++..... . .. ......+...+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~~~~~---------~-------~~-------~~~~~~~~~~~~ 98 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSDFVE---------M-------FV-------GVGASRVRDMFE 98 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCSSTT---------S-------CC-------CCCHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHHHHHH---------H-------hh-------hhhHHHHHHHHH
Confidence 389999999999999999998763 1266776554210 0 00 111223333333
Q ss_pred hhhccCCCCeeEEEEeCcchhhcccccc--chhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 143 SQSGFIENKVGMIVIDSIAGIFRNTYAE--DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 143 ~~~~~~~~~~~lvvID~l~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
... ...+.+++||++..+....... .....+...+..++..+..+....++.||.+++...
T Consensus 99 ~a~---~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 99 QAK---KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp HHH---TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHH---HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 332 2356899999997765422111 011112233444444444333334566666655443
No 131
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.00 E-value=5e-05 Score=73.38 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
++|++++|+||||+|||||++.+++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6899999999999999999999998653
No 132
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.00 E-value=1.6e-05 Score=72.41 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=67.5
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
.+++| +.|+||||+|||+|++.++.... ...+++++.+... ...+ .....
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~~~~---------~~~g--------------~~~~~ 96 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSDFVE---------LFVG--------------VGAAR 96 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGTTT---------CCTT--------------HHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHHHHH---------HHhc--------------ccHHH
Confidence 34445 88999999999999999998763 1256666543210 0000 01122
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhcccccc--chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAE--DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+...+... ....+.+++||++..+....-.+ .....+.+.+.+++..+..+....++.||.+++.....+
T Consensus 97 ~r~lf~~A---~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 97 VRDLFAQA---KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHH---HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHHHH---HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 23333333 22467999999998875422110 001113344555666665544456888888877665443
No 133
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.99 E-value=2.3e-05 Score=75.42 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=74.6
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
.|+.+..-++++||||+|||+|++.+|..+. ...+++++.+ +..... ..+..
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg-----~~~~~v~~~~---------l~sk~~--------------gese~ 284 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE---------IMSKLA--------------GESES 284 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTTT-----CEEEEEEHHH---------HHSSCT--------------THHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEEhHH---------hhcccc--------------hHHHH
Confidence 3777888899999999999999999887652 2255565432 111100 00112
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.+...+... ....+.+++||++..+......... ....+.+.+++..+..+....++.||.++.-....+
T Consensus 285 ~lr~lF~~A---~~~~PsIIfIDEiDal~~~r~~~~~-~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 285 NLRKAFEEA---EKNAPAIIFIDELDAIAPKREKTHG-EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHHHHHH---TTSCSEEEEEESGGGTCCTTTTCCC-TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred HHHHHHHHH---HHcCCeEEEEehhcccccccCCCCC-hHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 233334333 3457899999999998754322211 113345566777777776667788877765544444
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.98 E-value=9.7e-06 Score=69.27 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.9
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
+.++...+.|+||||+|||++++.++.... ...+++++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~ 69 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSA 69 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeH
Confidence 556667899999999999999999998773 22666654
No 135
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.97 E-value=2.7e-05 Score=76.31 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=25.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.+|++++|+||||+||||+++.++...
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999985443
No 136
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.96 E-value=2.1e-06 Score=73.26 Aligned_cols=44 Identities=27% Similarity=0.482 Sum_probs=33.7
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYI 97 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi 97 (279)
|+.+ .--+++|++++|.||||||||||++.+++... +..|.+++
T Consensus 54 l~~i-sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 97 (290)
T 2bbs_A 54 LKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKH 97 (290)
T ss_dssp EEEE-EEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEEC
T ss_pred EEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE
Confidence 4433 34689999999999999999999999988763 44454433
No 137
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.96 E-value=6.1e-05 Score=74.66 Aligned_cols=50 Identities=8% Similarity=0.075 Sum_probs=32.9
Q ss_pred CCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 149 ENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 149 ~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
..++.++++|+++.-.+.. + + ...+...|+.++++.++++|+++|.....
T Consensus 866 a~~~sLlLLDEp~~Gtd~~----d---g---~~~~~~il~~L~~~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATF----D---G---TAIANAVVKELAETIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHH----H---H---HHHHHHHHHHHHHTSCCEEEEECCCHHHH
T ss_pred CCCCcEEEEECCCCCCChH----H---H---HHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 3578999999998643211 1 1 12244556666665699999999987654
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.96 E-value=5.1e-05 Score=68.13 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHH--HhCCCCCccccCcEEEEecCCHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLC--ELSPLAKPKCSDKIFITHCYEFIDL 137 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~l 137 (279)
++.++.++|++|+||||++..++..+. ...+.++++++.. +......++. ....+.... ......++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~~-----~~~~~~dp~~i 167 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQVY-----GEPNNQNPIEI 167 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCEE-----CCTTCSCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCc-cchhHHHHHHHHHHhcCCcee-----eccccCCHHHH
Confidence 478999999999999999999998885 2333488877764 3333333332 222221110 00011233333
Q ss_pred HH-HHHhhhccCCCCeeEEEEeCcch
Q psy2198 138 KR-TLESQSGFIENKVGMIVIDSIAG 162 (279)
Q Consensus 138 ~~-~i~~~~~~~~~~~~lvvID~l~~ 162 (279)
.. .+... ...++++++||..+.
T Consensus 168 ~~~al~~a---~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 168 AKKGVDIF---VKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHHHHHHT---TTTTCSEEEEEECCC
T ss_pred HHHHHHHH---HhcCCCEEEEECCCC
Confidence 22 22222 335789999998764
No 139
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.95 E-value=1.6e-05 Score=77.83 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=26.5
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHH
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
+--+++|++++|+||||||||||++.+++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999999999985
No 140
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.93 E-value=2.5e-05 Score=67.59 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=56.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEE-ec---CC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFIT-HC---YE 133 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~---~~ 133 (279)
..+|+++.|+|++|+||||++..++..+. ...+.+++++... +......++..... . ....++.+. .. .+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~-~r~~a~~ql~~~~~-~--~~~~~l~vip~~~~~~~ 175 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT-FRAGATQQLEEWIK-T--RLNNKVDLVKANKLNAD 175 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC-SCHHHHHHHHHHHT-T--TSCTTEEEECCSSTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC-cchhHHHHHHHHHh-c--cccCCceEEeCCCCCCC
Confidence 46799999999999999999999999885 2334488877664 33322222211100 0 012344444 21 12
Q ss_pred HH-HHHHHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 134 FI-DLKRTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 134 ~~-~l~~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
+. .+.+.+... ...++++|+||....+
T Consensus 176 p~~~~~~~l~~~---~~~~yD~VIIDTpg~l 203 (320)
T 1zu4_A 176 PASVVFDAIKKA---KEQNYDLLLIDTAGRL 203 (320)
T ss_dssp HHHHHHHHHHHH---HHTTCSEEEEECCCCG
T ss_pred HHHHHHHHHHHH---HhcCCCEEEEcCCCcc
Confidence 22 122223222 2357899999987764
No 141
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.90 E-value=4.9e-05 Score=66.70 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++..+..-++|+||||+|||++++.++...
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445666678999999999999999999876
No 142
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.89 E-value=6.3e-05 Score=67.93 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRT 140 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 140 (279)
+..+.|+||+|+|||||++.++.......+...++|++.+.. ...+... ... .....+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~-----~~~~~~~-------~~~-------~~~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-----LNDLVDS-------MKE-------GKLNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH-----HHHHHHH-------HHT-------TCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH-----HHHHHHH-------HHc-------ccHHHHHHH
Confidence 567999999999999999999987742222344888877642 1112111 000 011122111
Q ss_pred HHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 141 LESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 141 i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
.. ..+++++||++..+.... .....+...+..+.. .+..+|++++.
T Consensus 191 ~~-------~~~~vL~IDEi~~l~~~~----------~~q~~l~~~l~~l~~-~~~~iIitt~~ 236 (440)
T 2z4s_A 191 YR-------KKVDILLIDDVQFLIGKT----------GVQTELFHTFNELHD-SGKQIVICSDR 236 (440)
T ss_dssp HT-------TTCSEEEEECGGGGSSCH----------HHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred hc-------CCCCEEEEeCcccccCCh----------HHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 11 256899999998753210 122345555555543 57777777654
No 143
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.89 E-value=3.2e-05 Score=69.97 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
++..+..-++|+||||+|||+++..++... .....+++++..
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~----~~~~~~~v~~~~ 203 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSD 203 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHC----CSSEEEEECCC-
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHc----CCCCEEEEeHHH
Confidence 345666789999999999999999999876 123366666543
No 144
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.89 E-value=6.3e-06 Score=67.30 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=24.8
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|+.+ +--+++|++++|+||||||||||+..+++..
T Consensus 13 l~~i-sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVP-RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCC-ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4444 4468899999999999999999999999865
No 145
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.88 E-value=0.00011 Score=63.29 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
..+..+.|+||||+|||++++.++.... .....++|++.+.
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSADD 75 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHHH
Confidence 3567899999999999999999998774 1233488887653
No 146
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.88 E-value=0.00011 Score=62.87 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=72.7
Q ss_pred hHhhcCccHHHHHHHHHHHhhcccccCCCCCCCCCceeccC-ChhhhhhhCCC-----ccCCcEEEEEcCCCCcHHHHHH
Q psy2198 6 QMLKLGFQEWEVNKVKDLKKKKAFQVGKNPIDMTEIVVSTG-SEKFDSILKGG-----IHAGGITELSGASGCGKTQLCL 79 (279)
Q Consensus 6 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tg-~~~LD~~L~gG-----l~~G~l~~I~G~~GsGKTtl~~ 79 (279)
.+.+.+++..-++++.+..++..+..... ....+..- ...|-++|+.. ..+|+++.|+|++|+||||++.
T Consensus 48 ~L~~~dv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 48 LLQETGIKESTKTNTLKKLLRFSVEAGGL----TEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHSSSCC----CTTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhhcccCC----CHHHHHHHHHHHHHHHhCCcccccccCCCcEEEEECCCCCCHHHHHH
Confidence 45678888888888888763221111000 00001000 01222222110 2368999999999999999999
Q ss_pred HHHHHhcccCCCC-eEEEEECCCCCCHHHHHHH--HHhCCCCCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEE
Q psy2198 80 QMCLSLQVSQPHK-GVLYICTESVFPTARLAQL--CELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIV 156 (279)
Q Consensus 80 ~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvv 156 (279)
.++..+. ...| .+++++.... ......++ .....++. +....+..++...+... .++++++
T Consensus 124 ~LA~~l~--~~~G~~V~lv~~D~~-r~~a~eqL~~~~~~~gl~--------~~~~~~~~~l~~al~~~-----~~~dlvI 187 (296)
T 2px0_A 124 KLAAISM--LEKHKKIAFITTDTY-RIAAVEQLKTYAELLQAP--------LEVCYTKEEFQQAKELF-----SEYDHVF 187 (296)
T ss_dssp HHHHHHH--HTTCCCEEEEECCCS-STTHHHHHHHHHTTTTCC--------CCBCSSHHHHHHHHHHG-----GGSSEEE
T ss_pred HHHHHHH--HhcCCEEEEEecCcc-cchHHHHHHHHHHhcCCC--------eEecCCHHHHHHHHHHh-----cCCCEEE
Confidence 9998885 2234 4888887642 22222222 12222221 11123445554444432 4679999
Q ss_pred EeCcc
Q psy2198 157 IDSIA 161 (279)
Q Consensus 157 ID~l~ 161 (279)
||...
T Consensus 188 iDT~G 192 (296)
T 2px0_A 188 VDTAG 192 (296)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99543
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.86 E-value=6e-05 Score=63.69 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=30.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
-+++| ++|+||||||||||++.++.... .+.+++++...
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~l 80 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPEL 80 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTTT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHHH
Confidence 44555 99999999999999999998763 25788877653
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.85 E-value=0.00012 Score=60.83 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=30.6
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|+....-+.|+||||+|||++++.++.... ...+++++..
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~ 74 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAE 74 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHH
Confidence 455666789999999999999999988763 2367777654
No 149
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.84 E-value=6.2e-05 Score=66.19 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=50.7
Q ss_pred ceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHH
Q psy2198 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE 113 (279)
Q Consensus 41 ~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~ 113 (279)
..+.||+..+|-.+ -+.+|+-+.|+|++|+|||||+..++..+....+.-.++|+-..+ ..+.+..+..
T Consensus 156 ~~~~tGiraID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE--R~~Ev~~~~~ 224 (422)
T 3ice_A 156 STEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE--RPEEVTEMQR 224 (422)
T ss_dssp CTTHHHHHHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS--CHHHHHHHHT
T ss_pred Ccccccceeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC--ChHHHHHHHH
Confidence 57899999999886 688999999999999999999999998775322232366653332 3444555543
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.83 E-value=1.1e-05 Score=64.74 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=25.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.+|++++|+|||||||||++..++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999999874
No 151
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.83 E-value=1.4e-05 Score=62.77 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.+..+.|+||+|+|||+++..++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999988763
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.83 E-value=0.00031 Score=56.22 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.|+||+|+|||+++..++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987763
No 153
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.82 E-value=5.4e-05 Score=65.41 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
++..+..-+.|+||||+|||++++.++.... ...+++++
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~~ 84 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSS 84 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEEH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEch
Confidence 4455667799999999999999999987752 23666654
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.81 E-value=1.2e-05 Score=63.42 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.0
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|-.+|++++|+||||||||||+..++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999998865
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.81 E-value=0.00021 Score=60.69 Aligned_cols=38 Identities=26% Similarity=0.214 Sum_probs=29.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.++..+.|+||||+|||++++.++.... ...+++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 89 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAAS 89 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEESTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHHH
Confidence 3567899999999999999999987752 2356666643
No 156
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.81 E-value=9.5e-05 Score=71.06 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
|++++|+||||+|||||++.+++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 99999999999999999999998763
No 157
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.81 E-value=1.1e-05 Score=69.15 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=31.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.|+.+ .-.+++|++++|+||||||||||++.+++.+
T Consensus 115 vL~~v-sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLW-LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHH-HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccc-eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45444 3589999999999999999999999999887
No 158
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.78 E-value=1.5e-05 Score=65.21 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=24.9
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-+++|++++|+||||||||||+..+++..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999999999876
No 159
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.77 E-value=0.00013 Score=66.87 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=30.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
-+++| +.|+||||+|||+|++.++.... .+.+++++..
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 45556 99999999999999999998762 3478887754
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.77 E-value=6.1e-05 Score=62.61 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=31.3
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
++.+ +--+++| +.|+||||+|||||++.++.... .+.+++++.
T Consensus 41 ~~~~-~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~ 83 (254)
T 1ixz_A 41 FHEM-GARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 83 (254)
T ss_dssp HHHT-TCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred HHHc-CCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 4443 3345566 99999999999999999998762 346776653
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.77 E-value=1.8e-05 Score=63.43 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=31.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF 103 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~ 103 (279)
++|+++.|+|+|||||||++..++... |.+++++....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~ 64 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFH 64 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccc
Confidence 679999999999999999999998776 46788877543
No 162
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=0.00015 Score=57.85 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
..+.|+||+|+|||+|+..++.... .....++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH
Confidence 6899999999999999999998775 223347887664
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.76 E-value=1.4e-05 Score=64.53 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=26.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.++|++++|+||||||||||+..++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999998874
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00032 Score=60.41 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----CeEEEEECCCCCCH-HHHHHHHHhCCCCCccccCcEEEEecCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPH-----KGVLYICTESVFPT-ARLAQLCELSPLAKPKCSDKIFITHCYE 133 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~-----~gvlyi~~e~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (279)
++..+.|+||||+|||+++..++..+...... -.++|+++....+. ..+..+..+..+. . ......
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~------~--~~~~~~ 115 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE------N--LCGDIS 115 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC------C----CCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC------C--CCchHH
Confidence 56778999999999999999999877421111 23788998765443 3444555543221 1 111223
Q ss_pred HHHHHHHHHhhhccCCCCeeEEEEeCcchhh
Q psy2198 134 FIDLKRTLESQSGFIENKVGMIVIDSIAGIF 164 (279)
Q Consensus 134 ~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~ 164 (279)
.+.+...+..... ....+.++++|++..+.
T Consensus 116 ~~~L~~~f~~~~~-~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 116 LEALNFYITNVPK-AKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHHHHSCG-GGSCEEEEEEECCSSSC
T ss_pred HHHHHHHHHHhhh-ccCCceEEEEecHHHhh
Confidence 4444445544311 23567899999998764
No 165
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.75 E-value=0.00012 Score=65.73 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEe---cCCHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITH---CYEFID 136 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~ 136 (279)
++.++.++|++|+||||++..++..+. .....|+.+++... ......++..... ...+.+.. ..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~--~~G~kVllv~~D~~-R~aa~eqL~~~~~------~~gvpv~~~~~~~dp~~ 169 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ--KRGYKVGVVCSDTW-RPGAYHQLRQLLD------RYHIEVFGNPQEKDAIK 169 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCCS-STHHHHHHHHHHG------GGTCEEECCTTCCCHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCc-chhHHHHHHHHHH------hcCCcEEecCCCCCHHH
Confidence 468999999999999999999998886 22233888877643 3333333322110 01222222 123333
Q ss_pred HH-HHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 137 LK-RTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 137 l~-~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
+. ..+... ...++++++||..+..
T Consensus 170 i~~~al~~a---~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 170 LAKEGVDYF---KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHH---HHTTCSEEEEECCCCS
T ss_pred HHHHHHHHH---HhCCCCEEEEECCCcc
Confidence 32 333332 2346899999987643
No 166
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.75 E-value=1.7e-05 Score=65.88 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=25.5
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..|+.+ .--+++|.+++|.||+|||||||+..++..+
T Consensus 13 ~~l~~i-sl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 13 LGTENL-YFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeecce-eccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555 5578899999999999999999999998865
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.72 E-value=1.7e-05 Score=63.73 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++|++++|+||||||||||+..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999999875
No 168
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.71 E-value=1.8e-05 Score=69.60 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=35.1
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
-+++|++++|+||+|||||||+..++..+. +..|.+++++.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 467999999999999999999999998773 56778888754
No 169
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.71 E-value=0.00018 Score=57.33 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=63.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCH-HHHHHHHHhCCCCCccccCcEEEEecCCHHHH
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPT-ARLAQLCELSPLAKPKCSDKIFITHCYEFIDL 137 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 137 (279)
..|.+..|+|+.|+||||.+++.+..... ....++|+..+-.... ..+..-... ..+.+. ..+..++
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~~D~R~~~~i~S~~g~-------~~~A~~---~~~~~d~ 85 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCTHDRN-------TMEALP---ACLLRDV 85 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEETTCCCGGGSCCHHHHH-------HSEEEE---ESSGGGG
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccccCccchhhhhhccCC-------ccccee---cCCHHHH
Confidence 35899999999999999888877777652 3345888876522110 000010010 011111 2333444
Q ss_pred HHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 138 KRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 138 ~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
.+... .+++|+||+.+.+ . + +...+..++ +.|+.||+....++-
T Consensus 86 ~~~~~--------~~DvIlIDEaQFf-k-~---------------~ve~~~~L~-~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 86 AQEAL--------GVAVIGIDEGQFF-P-D---------------IVEFCEAMA-NAGKTVIVAALDGTF 129 (195)
T ss_dssp HHHHH--------TCSEEEESSGGGC-T-T---------------HHHHHHHHH-HTTCEEEEEEESBCT
T ss_pred HHhcc--------CCCEEEEEchhhh-H-H---------------HHHHHHHHH-HCCCeEEEEeccccc
Confidence 44321 3599999999975 1 1 112335555 579999988765553
No 170
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.70 E-value=1.1e-05 Score=65.31 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=25.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
+++|++++|.||||||||||++.+++.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999999999987
No 171
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.69 E-value=5.2e-05 Score=73.41 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=34.8
Q ss_pred CeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 151 KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+++++|+|+.+.-.+. ....++.+.|+++++ .|.+||+++|......
T Consensus 751 ~p~lLILDEPTsGLD~-----------~~~~~l~~lL~~L~~-~G~tVIvisHdl~~i~ 797 (842)
T 2vf7_A 751 GGTVYVLDEPTTGLHP-----------ADVERLQRQLVKLVD-AGNTVIAVEHKMQVVA 797 (842)
T ss_dssp SCEEEEEECTTTTCCH-----------HHHHHHHHHHHHHHH-TTCEEEEECCCHHHHT
T ss_pred CCCEEEEECCCCCCCH-----------HHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHH
Confidence 4799999999975431 234567777777765 5999999999877653
No 172
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.69 E-value=7.1e-05 Score=72.66 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=67.7
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
++.+++.++|+||||||||||++.++.... ...+++++.... .... ......
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~i~v~~~~l~---------~~~~--------------g~~~~~ 285 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEIM---------SKLA--------------GESESN 285 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEEEEEEHHHHS---------SSST--------------THHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcEEEEEchHhh---------hhhh--------------hhHHHH
Confidence 789999999999999999999999987652 225666553210 0000 000112
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+...+... ....+.++++|++..+......... .........+...+..+....++.++.+++.....+
T Consensus 286 l~~vf~~a---~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 286 LRKAFEEA---EKNAPAIIFIDELDAIAPKREKTHG-EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHHHHH---HHHCSEEEEEESGGGTSCTTSCCCS-HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred HHHHHHHH---HhcCCcEEEeccHHHhhhccccccc-hHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 22223222 1235689999999887643211111 112223344444444333345778888877655444
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=0.00016 Score=66.64 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=62.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHH
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLK 138 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 138 (279)
++...+.|+||+|+|||++++.++.... ..+++++.........+...+...... .+...+.
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in~s~~~~~~~~~~~i~~~~~~-------------~~~~~~~ 136 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDVRSKTLLNAGVKNALDN-------------MSVVGYF 136 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSCCCHHHHHHTGGGGTTB-------------CCSTTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEeCCCcchHHHHHHHHHHHhcc-------------ccHHHHH
Confidence 3567899999999999999999987762 347788776554433333222211000 0000000
Q ss_pred HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 139 RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 139 ~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
....+.. .......+++||++..+..... ..+..|.++.++.++.+|++...
T Consensus 137 ~~~~~~~-~~~~~~~vliIDEid~l~~~~~-------------~~l~~L~~~l~~~~~~iIli~~~ 188 (516)
T 1sxj_A 137 KHNEEAQ-NLNGKHFVIIMDEVDGMSGGDR-------------GGVGQLAQFCRKTSTPLILICNE 188 (516)
T ss_dssp TC----C-CSSTTSEEEEECSGGGCCTTST-------------THHHHHHHHHHHCSSCEEEEESC
T ss_pred hhhhhhh-hccCCCeEEEEECCCccchhhH-------------HHHHHHHHHHHhcCCCEEEEEcC
Confidence 0000000 0335678999999987643210 11334445555567777777654
No 174
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.68 E-value=6.4e-05 Score=58.74 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.+..+.|+||+|+|||+++..++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999988764
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.67 E-value=2.4e-05 Score=62.73 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+++|++++|+|+|||||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999998876
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.66 E-value=0.00011 Score=67.08 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=67.5
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFID 136 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (279)
|.++..-++|+||||+|||++++.++... ....+++++.. +..... ......
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn~~~---------l~~~~~--------------g~~~~~ 285 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPE---------IMSKLA--------------GESESN 285 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEEHHH---------HHTSCT--------------THHHHH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEEchH---------hhhhhc--------------chhHHH
Confidence 46677779999999999999999997664 23367776532 111100 001122
Q ss_pred HHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccc
Q psy2198 137 LKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSA 207 (279)
Q Consensus 137 l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~ 207 (279)
+...+... ....+.+++||++..+........ .........++.+.|..+....++.||.+++....
T Consensus 286 ~~~~f~~A---~~~~p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 286 LRKAFEEA---EKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHH---HHTCSEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHHH---HhcCCcEEEecchhhhcccccccc-chHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 23333332 224568999999988765322111 11123344556666665544556777776655433
No 177
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.65 E-value=0.0001 Score=66.56 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=41.7
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
......+.||+..+|.+. -+-+|+.+.|+|++|+|||||+..++....
T Consensus 129 ~~~~e~l~TGir~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 129 ATEVEILETGIKVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CCSCCEECCSCHHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cccCccccccchHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 345668999999999985 577899999999999999999999988764
No 178
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.64 E-value=8.8e-05 Score=63.37 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+|+++.++|++|+||||++..+++.+. ...+.+++++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCc
Confidence 789999999999999999999999885 2334477777654
No 179
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.63 E-value=0.00037 Score=62.37 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHH--HHhCCCCCccccCcEEEEe---cCCH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQL--CELSPLAKPKCSDKIFITH---CYEF 134 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~---~~~~ 134 (279)
+++++.++|++|+||||++..++..+. ...+.++.++.. ...+....++ ..... ++.+.. ..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D-~~r~aa~~qL~~~~~~~--------gv~v~~~~~~~~p 165 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAAD-TQRPAAREQLRLLGEKV--------GVPVLEVMDGESP 165 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECC-SSCHHHHHHHHHHHHHH--------TCCEEECCTTCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeecc-ccCchhHHHHHHhcccC--------CccEEecCCCCCH
Confidence 688999999999999999999999886 233347777765 3343332222 11111 111111 1344
Q ss_pred HHHH-HHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 135 IDLK-RTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 135 ~~l~-~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
.++. ..+... ...++++++||....+
T Consensus 166 ~~i~~~~l~~~---~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 166 ESIRRRVEEKA---RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHHHHHHH---HHTTCSEEEEECCCCS
T ss_pred HHHHHHHHHHH---HHCCCCEEEEcCCCcc
Confidence 4442 233332 1246799999986543
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.62 E-value=0.00044 Score=61.24 Aligned_cols=118 Identities=13% Similarity=0.115 Sum_probs=59.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHH
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLK 138 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 138 (279)
.++.-++|+||||+|||++++.++... ....+++++..... ... ......+.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~~~~l~~-----~~~------------------g~~~~~~~ 197 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAASLTS-----KYV------------------GEGEKLVR 197 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEECSCCC------------------------------CHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEeeHHHhhc-----ccc------------------chHHHHHH
Confidence 346789999999999999999997764 23467776654311 000 00111222
Q ss_pred HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHH--HcCcEEEEeccccccc
Q psy2198 139 RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSI--KHRIVVICTNQVTSAM 208 (279)
Q Consensus 139 ~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~--~~~~~vi~v~h~~~~~ 208 (279)
..+... ....+.+++||++..+......+. ..........+...+..+.. ..++.||.++......
T Consensus 198 ~~~~~a---~~~~~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 198 ALFAVA---RELQPSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp HHHHHH---HHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred HHHHHH---HhcCCeEEEEECchhhcccCCCcc-chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 222222 223568999999998754321111 00122333455555554433 2345666655543333
No 181
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.62 E-value=0.0004 Score=67.91 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=35.0
Q ss_pred CeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccCC
Q psy2198 151 KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~~ 210 (279)
+++++++|+.+.-... .....+.+.|+++.+ .|.|||+++|.......
T Consensus 826 ~p~LLILDEPTsGLD~-----------~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i~~ 873 (916)
T 3pih_A 826 GRTLYILDEPTVGLHF-----------EDVRKLVEVLHRLVD-RGNTVIVIEHNLDVIKN 873 (916)
T ss_dssp SSEEEEEESTTTTCCH-----------HHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTT
T ss_pred CCCEEEEECCCCCCCH-----------HHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHh
Confidence 5789999999985432 234556777777765 59999999998765543
No 182
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.62 E-value=1.8e-05 Score=71.88 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=34.0
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-E-EEEEC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-V-LYICT 99 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-v-lyi~~ 99 (279)
-+++|++++|+||+|||||||++.+++... +.+| . +++++
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg 175 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINL 175 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEEC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcC
Confidence 578999999999999999999999998874 4455 4 88876
No 183
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.62 E-value=3.3e-05 Score=62.31 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
++|++++|+|++|||||||+..++..+. + .+.|++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG---E--RVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG---G--GEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC---C--CeEEEecC
Confidence 5789999999999999999999998763 1 35555544
No 184
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.61 E-value=0.0012 Score=53.69 Aligned_cols=44 Identities=25% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHH
Q psy2198 60 AGGI-TELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTA 106 (279)
Q Consensus 60 ~G~l-~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~ 106 (279)
+|++ +.+.|++|+||||++..++..+. ..| .|++++.+..-+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~---~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL---RQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCCTTCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH---HCCCCEEEEEeCCCCChh
Confidence 4565 77899999999999999998886 333 48887777543333
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.59 E-value=4.2e-05 Score=61.34 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=31.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e 100 (279)
.++|+++.|.|+|||||||++..++..+. ..|. ++|+++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGD 62 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCc
Confidence 36899999999999999999999998873 2222 4577765
No 186
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.59 E-value=4e-05 Score=66.05 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=33.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC--eEEEEECCCC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK--GVLYICTESV 102 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~--gvlyi~~e~~ 102 (279)
+.+|++++|+||||||||||+..+++... +..| .+.|+.....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA--RWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc--ccCCCCeEEEEecCcc
Confidence 68899999999999999999999998874 2222 3666665543
No 187
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.57 E-value=2.3e-05 Score=64.32 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=20.5
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHH-HHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMC-LSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~-~~~ 85 (279)
-+++|++++|+||+||||||++..++ ...
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46889999999999999999999998 764
No 188
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.57 E-value=0.00014 Score=70.15 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=64.1
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
.|+.+..-++++||||||||.++..++.... .-++.... ..++....+ .+..
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~-------~~f~~v~~-------~~l~s~~vG--------------ese~ 557 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIKG-------PELLTMWFG--------------ESEA 557 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT-------CEEEECCH-------HHHHTTTCS--------------SCHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC-------CceEEecc-------chhhccccc--------------hHHH
Confidence 4777777799999999999999999997763 22332221 223222111 1223
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhccccc--cchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecc
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYA--EDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQ 203 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h 203 (279)
.+.+.+... ....+.+++||++..+....-. +.......+.+.+++..|..+....++.||.++.
T Consensus 558 ~vr~lF~~A---r~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN 624 (806)
T 3cf2_A 558 NVREIFDKA---RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp HHHHHHHHH---HTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-C
T ss_pred HHHHHHHHH---HHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC
Confidence 344444443 2346799999999998653211 1111112234566666666555455655655443
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.57 E-value=5.5e-05 Score=59.04 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=31.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF 103 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~ 103 (279)
.+|+++.|+|+|||||||++..++... |..++++....
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcccc
Confidence 468999999999999999999998765 36777776543
No 190
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.56 E-value=0.00025 Score=57.56 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
..+.|+||+|+|||+++..++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999999988764
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.55 E-value=4.4e-05 Score=61.66 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++|++++|+||||+||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999998775
No 192
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.55 E-value=0.00056 Score=59.02 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
|.++.|+|++|+|||+|+..++... +++|++...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeec
Confidence 5799999999999999999988654 288888653
No 193
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.52 E-value=0.00039 Score=60.93 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=29.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.+..-+.|+||||+|||++++.++.... ...+++++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~ 152 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASS 152 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHH
Confidence 4566799999999999999999987652 2366776643
No 194
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.51 E-value=9.1e-05 Score=63.63 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=31.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.+|++++|+|++|||||||+..++......+..|.+.+++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 789999999999999999999999876210123335555544
No 195
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.51 E-value=4.9e-05 Score=60.22 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|++++|.|||||||||++..++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999876
No 196
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=6.8e-05 Score=60.02 Aligned_cols=30 Identities=30% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-.+.+|.++.|+|++||||||++..++..+
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999999876
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.0006 Score=59.15 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=24.3
Q ss_pred ccCCcE--EEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGI--TELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l--~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+..|++ +.|+||||+||||+++.++..+.
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344555 99999999999999999998874
No 198
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.49 E-value=0.00016 Score=66.23 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=30.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe--EEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG--VLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g--vlyi~~e 100 (279)
+..+.-++|+|++|||||++++.+...++.....+. ++.+|..
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 566788999999999999999998876553333333 3444544
No 199
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.49 E-value=0.00012 Score=65.45 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=30.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.+|++++|+||+||||||+++.++..+. +..+.++++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecc
Confidence 6899999999999999999999998874 23333555543
No 200
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.49 E-value=0.00032 Score=62.16 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=54.6
Q ss_pred CCcEEEE--EcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEECCCCCCHHH-HHHHHHhCCCCCccccCcEEEEecC
Q psy2198 60 AGGITEL--SGASGCGKTQLCLQMCLSLQVSQ----PHKGVLYICTESVFPTAR-LAQLCELSPLAKPKCSDKIFITHCY 132 (279)
Q Consensus 60 ~G~l~~I--~G~~GsGKTtl~~~l~~~~~~~~----~~~gvlyi~~e~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 132 (279)
.+..+.| +|++|+|||+++..++....... ....++|+++....+... +.++.... +... . ....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~--~-----~~~~ 120 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT-GYPI--Q-----VRGA 120 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHH-TCCC--C-----CTTC
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHh-CCCC--C-----CCCC
Confidence 4568888 99999999999999987763100 022388998644333332 33333321 1100 0 0112
Q ss_pred CHHHHHHHHHhhhccCCCCeeEEEEeCcchhh
Q psy2198 133 EFIDLKRTLESQSGFIENKVGMIVIDSIAGIF 164 (279)
Q Consensus 133 ~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~ 164 (279)
+..++...+.+.+. ...++-++|||++..+.
T Consensus 121 ~~~~~~~~l~~~l~-~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 121 PALDILKALVDNLY-VENHYLLVILDEFQSML 151 (412)
T ss_dssp CHHHHHHHHHHHHH-HHTCEEEEEEESTHHHH
T ss_pred CHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHh
Confidence 34454444444332 22457899999998764
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.48 E-value=0.00012 Score=58.61 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=31.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e 100 (279)
..+|.++.|+|++||||||++..++..+. +.++ +.+++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEEeccC
Confidence 56789999999999999999999998763 3344 6665433
No 202
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.48 E-value=0.00014 Score=64.02 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccC-----C-CCeEEEEECCCCC-CHH-HHHHHHHhCCCCCccccCcEEEEecC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQ-----P-HKGVLYICTESVF-PTA-RLAQLCELSPLAKPKCSDKIFITHCY 132 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-----~-~~gvlyi~~e~~~-~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 132 (279)
+..+.|+||+|+|||+++..++..+.... . ...++|+++.... +.. -+.++.....+.... ....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~ 117 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP-------KHGI 117 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC-------SSSS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC-------CCCC
Confidence 45899999999999999999988753110 0 3348888865322 222 223333321111000 0122
Q ss_pred CHHHHHHHHHhhhccCCCCeeEEEEeCcchhh
Q psy2198 133 EFIDLKRTLESQSGFIENKVGMIVIDSIAGIF 164 (279)
Q Consensus 133 ~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~ 164 (279)
+..++...+.+.. ...+. +++||++..+.
T Consensus 118 ~~~~~~~~l~~~l--~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 118 NLGEYIDKIKNGT--RNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp CTHHHHHHHHHHH--SSSCE-EEEEETTHHHH
T ss_pred CHHHHHHHHHHHh--ccCCC-EEEEECHHHhc
Confidence 3345555554443 22333 99999998764
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.48 E-value=0.0014 Score=56.27 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.++.++||||+|||++++.++.... ..+++++...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~ 83 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD 83 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc
Confidence 5789999999999999999987652 3477777654
No 204
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.46 E-value=0.00057 Score=54.43 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=29.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~ 98 (279)
.+|.+..++|+.|+||||.+..++..+. .....|+.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEE
Confidence 4688999999999999999999998874 1222366654
No 205
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.46 E-value=0.00094 Score=56.85 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=29.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccC--CCCeEEEEECC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQ--PHKGVLYICTE 100 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~--~~~gvlyi~~e 100 (279)
.++.-+.|+||||+|||++++.++..+.... ..+.+++++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3455699999999999999998887763110 12236666643
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00065 Score=57.86 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
+...+.|+||||+|||++++.++.... ...+..+++++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEY 86 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeecccc
Confidence 346899999999999999999998874 22334788877654
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.43 E-value=7.7e-05 Score=64.96 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=35.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|+.+ .--+.+|+++.|+|+||+|||||+..+++... +.+|.+++.+.
T Consensus 44 ~l~~i-~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~ 91 (337)
T 2qm8_A 44 LIDAV-LPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAV 91 (337)
T ss_dssp HHHHH-GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEE
T ss_pred HHHhC-CcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEE
Confidence 44544 33578899999999999999999999998874 44554444443
No 208
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.41 E-value=0.00036 Score=56.40 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=30.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.+|.+..++|+.|+||||.++.++..+.. ....++.+..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~k~ 64 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVFKP 64 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEe
Confidence 56899999999999999999999988751 2223666653
No 209
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.40 E-value=8.4e-05 Score=68.29 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=34.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
++.|+.++|+||+||||||+++.++..+. +..+.+.+.+..
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~~ 297 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDTR 297 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESSC
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCcc
Confidence 46899999999999999999999888763 566788887654
No 210
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.40 E-value=6.1e-05 Score=68.48 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=37.4
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+..|+.+ .--+++ ++++|.||||||||||+..+++... +..|.+++++..
T Consensus 17 ~~~l~~v-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 66 (483)
T 3euj_A 17 WNGFFAR-TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTT 66 (483)
T ss_dssp ETTEEEE-EEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTT
T ss_pred cccccce-EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 3445443 346788 9999999999999999999998874 555656665543
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.39 E-value=9.4e-05 Score=57.49 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.|.++.|+|++||||||++..++.... ..|+++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-------~~~id~d 36 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSD 36 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-------CEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-------CCEEecc
Confidence 467899999999999999999998763 3566653
No 212
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.39 E-value=0.00011 Score=58.07 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=25.9
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|+..+.++.|.|+|||||||++..++..+
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46678899999999999999999998765
No 213
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.39 E-value=8.2e-05 Score=58.87 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
|+++.|+|||||||||++..++.. .++.++++++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d 35 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGD 35 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEccc
Confidence 678999999999999999999752 2356777664
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.37 E-value=0.00041 Score=52.49 Aligned_cols=26 Identities=19% Similarity=0.032 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.-+.|.||+|+|||++++.++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34558999999999999999887654
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.37 E-value=0.00012 Score=57.46 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=29.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e 100 (279)
.+|.++.|+|++||||||++..++..+. +.| .+++++++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~---~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV---CHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh---hCCCcEEEECCh
Confidence 6799999999999999999999998763 222 26666643
No 216
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=0.0001 Score=58.72 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|+++.|+||||+|||||+..+++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 6889999999999999999999887
No 217
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.35 E-value=0.00059 Score=61.57 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.....+.||+..+|-++ -+-+|+-..|+|++|+|||+|+..++....
T Consensus 132 ~~~e~l~TGir~ID~l~--pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~ 178 (482)
T 2ck3_D 132 VEQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVA 178 (482)
T ss_dssp CCCCEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccCcCCccceEEEeccc--ccccCCeeeeecCCCCChHHHHHHHHHhhH
Confidence 34678999999999987 588999999999999999999999998864
No 218
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.34 E-value=0.00014 Score=57.32 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=32.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.||+-+. ..+|.++.|.|++||||||++..++..+. ...+.+.+++++
T Consensus 3 ~~~~~~~--~~~~~~i~l~G~~GsGKsT~~~~L~~~l~--~~~~~~~~~~~d 50 (186)
T 2yvu_A 3 ALTTYKC--IEKGIVVWLTGLPGSGKTTIATRLADLLQ--KEGYRVEVLDGD 50 (186)
T ss_dssp -----CC--CSCCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEHH
T ss_pred ccccccc--cCCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEeeHH
Confidence 3555332 35789999999999999999999998874 223336677643
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.33 E-value=0.00011 Score=61.88 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.++|+||||+|||||+..+++... +..|.++++++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~ 38 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREE 38 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCc
Confidence 478999999999999999999874 55566666554
No 220
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.32 E-value=0.00013 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.++|+||||||||||+..+++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998863
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.32 E-value=0.00042 Score=60.55 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.+.+++|+|+||+|||||+..++....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999998764
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.32 E-value=2e-05 Score=76.53 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=64.9
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
-|+.++..++|+||||+|||+|++.++.... ...+++++..... ... .....
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~~~l~~---------~~~--------------g~~~~ 557 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPELLT---------MWF--------------GESEA 557 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCCCCCCSSSTT---------CCT--------------TTSSH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhC-----CCEEEEechHhhh---------hhc--------------CccHH
Confidence 4788999999999999999999999998873 1234444332210 000 01112
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhcccccc--chhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAE--DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.+...+.... ...+.++++|++..+....-.. .......+.+.+++..|..+....++.||.+++.....+
T Consensus 558 ~i~~~f~~a~---~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 558 NVREIFDKAR---QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp HHHHHHHHHH---HHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred HHHHHHHHHH---hcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 2222333221 1245789999998875432111 111112233445555555555556777777776544444
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.32 E-value=0.00015 Score=58.07 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+|++++|+||+|+|||||+..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 478999999999999999999998765
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.31 E-value=0.00014 Score=58.46 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=25.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.+|.++.|+|||||||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999998765
No 225
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.30 E-value=0.00036 Score=59.87 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCeEEEEECC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQ-VSQPHKGVLYICTE 100 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~-~~~~~~gvlyi~~e 100 (279)
+.-+.|+||+|+|||+|+..++..+. . ....++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~--~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEK--KGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHH--SCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEHH
Confidence 67899999999999999999988763 1 22337887654
No 226
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=0.00015 Score=58.22 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=31.5
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
-+++|.+++|+|++||||||++..++..+. ++.+++....
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------~~~~i~~D~~ 56 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP------NCSVISQDDF 56 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST------TEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC------CcEEEeCCcc
Confidence 467899999999999999999999886541 3666666543
No 227
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.27 E-value=0.00018 Score=56.38 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=24.2
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.+| +++|+|+|||||||++..++..+
T Consensus 23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 23 PFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp ECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 45567 99999999999999999888765
No 228
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.0009 Score=57.10 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.|+||+|+|||+++..++..+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998763
No 229
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.23 E-value=0.0011 Score=60.15 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=44.9
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECCC
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTES 101 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e~ 101 (279)
.....++.||+..+|.++ -+-+|+-..|+|++|+|||+|+........ ..+. ++|+-..+
T Consensus 153 ~~v~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~~~---~~dv~~V~~~IGe 213 (515)
T 2r9v_A 153 KPVDTPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQK---GQGVYCIYVAIGQ 213 (515)
T ss_dssp CCCCSEECCSCHHHHHHS--CEETTCBEEEEEETTSSHHHHHHHHHHTTT---TTTEEEEEEEESC
T ss_pred cCCCcchhcCcccccccc--ccccCCEEEEEcCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCC
Confidence 334568999999999987 588999999999999999999765554443 2332 56664443
No 230
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.23 E-value=0.0002 Score=63.16 Aligned_cols=30 Identities=20% Similarity=0.086 Sum_probs=27.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++++|++++|.||||+|||||+..++...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999999999754
No 231
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.0075 Score=51.91 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=33.4
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+++.+. . +.. .++.|+|++|+|||+|+..++.... . .++|++...
T Consensus 21 el~~L~-~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~----~-~~~~~~~~~ 65 (357)
T 2fna_A 21 EIEKLK-G-LRA-PITLVLGLRRTGKSSIIKIGINELN----L-PYIYLDLRK 65 (357)
T ss_dssp HHHHHH-H-TCS-SEEEEEESTTSSHHHHHHHHHHHHT----C-CEEEEEGGG
T ss_pred HHHHHH-H-hcC-CcEEEECCCCCCHHHHHHHHHHhcC----C-CEEEEEchh
Confidence 444443 2 444 6999999999999999999988762 1 378888763
No 232
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.22 E-value=0.0019 Score=58.59 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=45.1
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECCC
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTES 101 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e~ 101 (279)
.....++.||+..+|.++ -+-+|+-..|+|++|+|||+|+........ ..+. ++|.-..+
T Consensus 140 ~~v~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGe 200 (502)
T 2qe7_A 140 KSVHEPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTTIAIDTIINQK---GQDVICIYVAIGQ 200 (502)
T ss_dssp CCCCSBCCCSCHHHHHSS--CCBTTCBCEEEECSSSCHHHHHHHHHHGGG---SCSEEEEEEEESC
T ss_pred cCCCCccccceeeccccc--ccccCCEEEEECCCCCCchHHHHHHHHHhh---cCCcEEEEEECCC
Confidence 344668999999999987 588999999999999999999765555443 2332 56664443
No 233
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.19 E-value=0.0028 Score=58.70 Aligned_cols=120 Identities=12% Similarity=0.095 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HhcccCCCCeEEEEECCCCC--CHH-HHHHHHHhCCCCCccccCcEEEEecCCH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCL--SLQVSQPHKGVLYICTESVF--PTA-RLAQLCELSPLAKPKCSDKIFITHCYEF 134 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~--~~~~~~~~~gvlyi~~e~~~--~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (279)
...++.|+|..|.||||||..++. .........+++|++..... +.. ....++........ ...+.-....+.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~ 228 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDD--LLNFPSVEHVTS 228 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSC--CTTCCCCTTCCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcc--cccccccccccH
Confidence 458999999999999999999885 11122345679999776643 222 33344433211100 001100112234
Q ss_pred HHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 135 IDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 135 ~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
.++...+.+.+. ..+.-++|+|.+... .+. .+....|+.||+|+...
T Consensus 229 ~~l~~~l~~~L~--~~kr~LlVLDdv~~~--------------~~~--------~~~~~~gs~ilvTTR~~ 275 (549)
T 2a5y_B 229 VVLKRMICNALI--DRPNTLFVFDDVVQE--------------ETI--------RWAQELRLRCLVTTRDV 275 (549)
T ss_dssp HHHHHHHHHHHT--TSTTEEEEEEEECCH--------------HHH--------HHHHHTTCEEEEEESBG
T ss_pred HHHHHHHHHHHc--CCCcEEEEEECCCCc--------------hhh--------cccccCCCEEEEEcCCH
Confidence 555666666542 222689999988652 111 11122799999998653
No 234
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.19 E-value=0.00057 Score=61.93 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHH
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFI 135 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (279)
.|..++.-+.++||||+|||+++..++..+. .....+++++...+. .. ....+
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~---~~~~~~~~~~~~~~~-------------------~~-----~~~~~ 110 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELG---SKVPFCPMVGSEVYS-------------------TE-----IKKTE 110 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHC---TTSCEEEEEGGGGCC-------------------SS-----SCHHH
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhC---CCceEEEEeHHHHHH-------------------Hh-----hhhhH
Confidence 4666667799999999999999999998873 223366666543210 00 01122
Q ss_pred HHHHHHHhhhccCCCCeeEEEEeCcchhhcc
Q psy2198 136 DLKRTLESQSGFIENKVGMIVIDSIAGIFRN 166 (279)
Q Consensus 136 ~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~ 166 (279)
.+...+..........+.++++|++..+...
T Consensus 111 ~~~~~f~~a~~~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 111 VLMENFRRAIGLRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhhhhcCCcEEEEechhhcccc
Confidence 2444444432112346799999999987654
No 235
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.18 E-value=0.00022 Score=59.30 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++|.++.|.||+||||||++..++..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 679999999999999999999999665
No 236
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.18 E-value=0.0033 Score=51.33 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=60.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLK 138 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 138 (279)
.|.+..++|+.|+||||.++..+..+. ..+ .++.+...-..... ..+..+ .++.. +.+.+ .+..++.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~D~Ryg--~~i~sr-~G~~~---~a~~i---~~~~di~ 85 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAKDTRYS--SSFCTH-DRNTM---EALPA---CLLRDVA 85 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETTCCCC--------------C---EEEEE---SSGGGGH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecCCccch--HHHHhh-cCCee---EEEec---CCHHHHH
Confidence 589999999999999999999988875 333 36666533221100 112111 11111 11111 2223433
Q ss_pred HHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 139 RTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 139 ~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
+.+ ..+++|+||+.+.+. . +.++++.+. +.++.||+....++
T Consensus 86 ~~~--------~~~dvViIDEaQF~~-----------~---v~el~~~l~----~~gi~VI~~GL~~D 127 (234)
T 2orv_A 86 QEA--------LGVAVIGIDEGQFFP-----------D---IVEFCEAMA----NAGKTVIVAALDGT 127 (234)
T ss_dssp HHH--------TTCSEEEESSGGGCT-----------T---HHHHHHHHH----HTTCEEEEECCSBC
T ss_pred HHh--------ccCCEEEEEchhhhh-----------h---HHHHHHHHH----hCCCEEEEEecccc
Confidence 333 256999999998741 0 334444444 37999999876644
No 237
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.18 E-value=0.0034 Score=56.87 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=42.7
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
......+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+..++...+
T Consensus 143 ~~~~e~l~TGirvID~l~--pigkGqr~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 143 DTKLSIFETGIKVVNLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp CCCCCCCCCSCTTHHHHS--CCCTTCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred cccccccccceeEeeeec--ccccCCeEEeecCCCCCchHHHHHHHHHHH
Confidence 334678999999999987 588999999999999999999999999874
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.17 E-value=0.00012 Score=57.31 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCC---CeEEEEECCC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPH---KGVLYICTES 101 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~---~gvlyi~~e~ 101 (279)
+++.|+|++|||||||+..++..+. +. .|.+.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcc
Confidence 5789999999999999999999885 33 4677777654
No 239
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.17 E-value=0.00039 Score=59.96 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+++|.||+|||||||+..++......+..+.+.+++...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 899999999999999999988764211233466666554
No 240
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.17 E-value=0.00023 Score=58.90 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+++++.|+|+|||||||++..++..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999544
No 241
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=97.16 E-value=0.00017 Score=62.66 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=58.6
Q ss_pred CHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHc--CcEEEEecccccccCC
Q psy2198 133 EFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKH--RIVVICTNQVTSAMTH 210 (279)
Q Consensus 133 ~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~--~~~vi~v~h~~~~~~~ 210 (279)
+...+...+.+.+......+-.|+|-++....+..-. ......+-.++..||.+.+++ +++++++- +..-..
T Consensus 199 ~y~~lL~~I~~~i~~~~~~ilRIvI~SLgSP~wy~~~----~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTl-P~~l~~- 272 (361)
T 4a8j_A 199 PVSTILSQIEQTIKRNDKKLIRIVIPSLLHPAMYPPK----MFESSEIIGLMHGVRSLVKKYYERVVLFASI-SIDIIT- 272 (361)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEEETTTTCTTTSCGG----GGBHHHHHHHHHHHHHHHHHTTTTEEEEEEE-ECTTSC-
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCc----ccCHHHHHHHHHHHHHHHhhcCCceEEEEEE-ChHHcC-
Confidence 4556666666665434567788999998876653211 112356788999999999976 44555553 222111
Q ss_pred CCCccCccccchhhhhhhheeeecccc
Q psy2198 211 SDKNIPALGLTYERAHDMRDLAHYLHE 237 (279)
Q Consensus 211 ~~~~~~~~g~~~~~~~~~rl~l~k~~~ 237 (279)
...-..+++.+|..+-|..-.+
T Consensus 273 -----~~l~~rle~l~D~vi~L~pF~~ 294 (361)
T 4a8j_A 273 -----PPLLVLLRNMFDSVINLEPFNQ 294 (361)
T ss_dssp -----HHHHHHHHHHCSEEEEEEECCH
T ss_pred -----hHHHHHHHHhCcEEEEeeecCC
Confidence 1334566788888888877543
No 242
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.15 E-value=0.0048 Score=56.78 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=52.1
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCC
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSP 116 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~ 116 (279)
.....+.||+..+|.++ -+-+|+-..|.|++|+|||+|+.+++... ...-++|.-..+ ..+....++..+.
T Consensus 211 ~~~epl~TGirvID~l~--PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGE--R~~Ev~e~~~~~~ 281 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFF--PVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGE--RGNEMTDVVNEFP 281 (600)
T ss_dssp CCCSBCCCCCHHHHHHS--CCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEE--CHHHHHHHHHHTT
T ss_pred CCCceecccchhhhccC--CccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecc--cHHHHHHHHHHHH
Confidence 44578899999999987 58899999999999999999999987654 222356653332 2445566666543
No 243
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.14 E-value=0.00025 Score=65.71 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=33.1
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe--EEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG--VLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g--vlyi~~e 100 (279)
-+.+|+++.|+|+|||||||+++.++..+. +.+| +.+++++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECCc
Confidence 467899999999999999999999998874 3443 5567664
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.12 E-value=0.00027 Score=55.55 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..|.++.|.|++||||||++..++..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998765
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.12 E-value=0.00032 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.++.|+|+|||||||++..++..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999876
No 246
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=97.12 E-value=0.00086 Score=60.44 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=41.3
Q ss_pred CCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 39 ~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
....+.||+..+|.++ -+-+|+-..|+|++|+|||+|+.+++....
T Consensus 132 ~~e~l~TGir~ID~l~--pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 132 PKDFIQTGISTIDGTN--TLVRGQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CCSBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred cccccceeeEeeeeee--ccccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999987 578899999999999999999999998775
No 247
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.11 E-value=0.00018 Score=58.91 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=24.9
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
..++|.++.|.|++||||||++..++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 5588999999999999999999987764
No 248
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.11 E-value=0.0021 Score=58.22 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=45.6
Q ss_pred CCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 36 IDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 36 ~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
......++.||+..+|.++ -+-+|+-..|+|++|+|||++++....... ..+.-++|+-..+
T Consensus 139 R~~v~epl~TGikaID~l~--PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~--~~dv~~V~~~IGe 200 (513)
T 3oaa_A 139 RQSVDQPVQTGYKAVDSMI--PIGRGQRELIIGDRQTGKTALAIDAIINQR--DSGIKCIYVAIGQ 200 (513)
T ss_dssp CCCCCCBCCCSCHHHHHHS--CCBTTCBCEEEESSSSSHHHHHHHHHHTTS--SSSCEEEEEEESC
T ss_pred cCCcCcccccceeeecccc--ccccCCEEEeecCCCCCcchHHHHHHHhhc--cCCceEEEEEecC
Confidence 3445678999999999987 578999999999999999999765554442 1222266764443
No 249
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.10 E-value=0.00023 Score=63.70 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=29.2
Q ss_pred hhhhhCCCccCCcE--EEEEcCCCCcHHHHHHHHHHHh
Q psy2198 50 FDSILKGGIHAGGI--TELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 50 LD~~L~gGl~~G~l--~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|+.+ .--+++|++ ++|+|+||+|||||+..+++..
T Consensus 30 L~~v-sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLV-NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHH-HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCC-ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 5554 457899999 9999999999999999998763
No 250
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.10 E-value=0.0051 Score=55.22 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTESV 102 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~~ 102 (279)
+..++.++|++|+||||++..++..+. .. ...|+.+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~--~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR--EKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH--HTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HhcCCeEEEEecCCC
Confidence 356899999999999999999998886 22 334888888753
No 251
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=97.10 E-value=0.00016 Score=52.27 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=22.1
Q ss_pred hhhHhhcCccHHHHHHHHHHHhhcc---cccCCC--CCCCCCceeccCChhhhhhhC
Q psy2198 4 TDQMLKLGFQEWEVNKVKDLKKKKA---FQVGKN--PIDMTEIVVSTGSEKFDSILK 55 (279)
Q Consensus 4 ~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~tg~~~LD~~L~ 55 (279)
-++++.+||++.+++|+++.+.+.. |..+.+ ..+.....|+||+..||.+|+
T Consensus 58 ~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~~r~~~~~itTGs~~lD~lLg 114 (114)
T 1b22_A 58 KELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQ 114 (114)
T ss_dssp HHHHTTTTCSTTHHHHHHHHHHHHSCCC-----------------------------
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHHHhcCCCeeccCcHHHHhhhC
Confidence 3567899999999999999999983 556655 567788999999999999974
No 252
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.10 E-value=0.00024 Score=57.30 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
++.|.|||||||+|.+..++..+. ..++++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcHHHH
Confidence 578999999999999999998773 667776544
No 253
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.09 E-value=0.00077 Score=54.46 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=58.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDL 137 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 137 (279)
-..|.+..|+|+-|+||||.+...+..+.. ....++.+...-. .+.-...+....+... +.+.+ .+..++
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D--~R~~~~~I~Sr~G~~~---~a~~v---~~~~di 94 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAID--DRYHKEKVVSHNGNAI---EAINI---SKASEI 94 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-------------CBTTBCC---EEEEE---SSGGGG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccC--CcchhhhHHHhcCCce---eeEEe---CCHHHH
Confidence 356899999999999999977766666541 2223555543321 0100111111112111 11122 122232
Q ss_pred HHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecc
Q psy2198 138 KRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQ 203 (279)
Q Consensus 138 ~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h 203 (279)
...+ ..++++|+||+.+.+ .. +++..|.+++ +.|+.|++..=
T Consensus 95 ~~~i-------~~~~dvV~IDEaQFf-~~---------------~~v~~l~~la-~~gi~Vi~~GL 136 (219)
T 3e2i_A 95 MTHD-------LTNVDVIGIDEVQFF-DD---------------EIVSIVEKLS-ADGHRVIVAGL 136 (219)
T ss_dssp GGSC-------CTTCSEEEECCGGGS-CT---------------HHHHHHHHHH-HTTCEEEEEEE
T ss_pred HHHH-------hcCCCEEEEechhcC-CH---------------HHHHHHHHHH-HCCCEEEEeec
Confidence 2211 246799999999864 10 2445666667 47999988763
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.08 E-value=0.0014 Score=60.01 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=35.5
Q ss_pred hhhhhhCC---Cc----cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKG---GI----HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~g---Gl----~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+|..+|++ .+ .+..+++|+|++|+||||++..++..+. .....++.++.+.
T Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~--~~G~kVllVd~D~ 139 (504)
T 2j37_W 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQ--RKGWKTCLICADT 139 (504)
T ss_dssp HHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEECC
T ss_pred HHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEeccc
Confidence 35556654 34 2356899999999999999999998875 2223378887754
No 255
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.08 E-value=0.00065 Score=59.73 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=47.8
Q ss_pred CCCCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 35 PIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 35 ~~~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
+.......+.||+..+|.++ -+-+|+-..|+|++|+|||+|+..++.......++-.++|+-..
T Consensus 151 R~~le~e~~~tGiraID~l~--PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIG 214 (427)
T 3l0o_A 151 RFILETDPKIYSTRLIDLFA--PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLID 214 (427)
T ss_dssp BCCCCCSTTCHHHHHHHHHS--CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred hccccccchhccchhhhhcc--cccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEec
Confidence 33444467899999999986 57789999999999999999999998876421122236665443
No 256
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.07 E-value=0.002 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..+.|+||||+||||+++.++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 359999999999999999998876
No 257
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.07 E-value=0.003 Score=57.36 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=38.8
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.....++.||+..+|.++ -+-+|+-..|+|++|+|||+|+.......
T Consensus 140 ~~v~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~q 186 (510)
T 2ck3_A 140 ISVREPMQTGIKAVDSLV--PIGRGQRELIIGDRQTGKTSIAIDTIINQ 186 (510)
T ss_dssp CCCCSBCCCSCHHHHHHS--CCBTTCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred cccCccccccceeecccc--ccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 334567999999999987 58899999999999999999966544444
No 258
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.0042 Score=50.81 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=28.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---CeEEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH---KGVLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~---~gvlyi~~e 100 (279)
+..|+.+.+.|++||||||++..++......... .++++....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~ 118 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPR 118 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESS
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccc
Confidence 3468999999999999998877666543221111 146666544
No 259
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.06 E-value=0.00046 Score=58.61 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=28.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
..+.++.|+|+|||||||++..++... + ++.++++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~----~-~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET----Q-GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT----T-TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----C-CCeEEEec
Confidence 356799999999999999999998764 1 24667765
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.05 E-value=0.00072 Score=59.11 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=29.2
Q ss_pred cCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 45 TGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 45 tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.|+..|... .+|++++|+|+||+|||||+..+++..
T Consensus 204 ~gl~~L~~~-----~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 204 DGLKPLEEA-----LTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp BTHHHHHHH-----HTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred cCHHHHHHh-----cCCCEEEEECCCCccHHHHHHHHhccc
Confidence 355566554 368999999999999999999998765
No 261
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.05 E-value=0.00043 Score=55.80 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=31.6
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe--EEEEEC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG--VLYICT 99 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g--vlyi~~ 99 (279)
.+++|.++.|.|++||||||++..++..+. +..| ++++++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccCCcEEEECC
Confidence 357899999999999999999999988763 1233 777763
No 262
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.04 E-value=0.00044 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.664 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.++.|+|++||||||++..++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.0004 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.|.|++||||||++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 264
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.03 E-value=0.00036 Score=55.99 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=31.9
Q ss_pred ChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 47 SEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 47 ~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+..|...+. |+|+...+.|+||||+|||+++..++..+
T Consensus 45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 566776664 68887789999999999999999988876
No 265
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.00099 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.|+||+|+|||+++..++..+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998763
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.02 E-value=0.00045 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|.++.|.|++||||||++..++..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999866
No 267
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.01 E-value=0.0005 Score=57.91 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
-+++| +.|+||||+|||||++.++.... .+.+++++.
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~ 107 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 107 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH
Confidence 34556 99999999999999999998762 346777653
No 268
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.00 E-value=0.0021 Score=58.30 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhC
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELS 115 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~ 115 (279)
.....++.||+..+|.++ -+-+|+-..|+|++|+|||+|+........ ..+.-++|.-..+ ..+....++...
T Consensus 141 ~~v~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGe--R~~Ev~~~~~~~ 213 (507)
T 1fx0_A 141 RSVYEPLQTGLIAIDAMI--PVGRGQRELIIGDRQTGKTAVATDTILNQQ--GQNVICVYVAIGQ--KASSVAQVVTNF 213 (507)
T ss_dssp CCCCSBCCCSCTTTTTTS--CCBTTCBCBEEESSSSSHHHHHHHHHHTCC--TTTCEEEEEEESC--CHHHHHHHHHHT
T ss_pred cccCCcccccceeccccc--ccccCCEEEEecCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCC--CchHHHHHHHHH
Confidence 334568999999999986 588999999999999999999775555543 1222356665443 244455555543
No 269
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.00 E-value=0.0038 Score=57.20 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=51.0
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhC
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELS 115 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~ 115 (279)
....++.||+..+|.++ -+-+|+-..|.|++|+|||+|+.+++... ...-++|+-..+. .+....++...
T Consensus 206 ~~~epl~TGirvID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER--~~Ev~e~~~~~ 275 (588)
T 3mfy_A 206 PPEVPLITGQRVIDTFF--PQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGER--GNEMTDVLEEF 275 (588)
T ss_dssp CSCSEECCSCHHHHHHS--CEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSS--SSHHHHHHHHT
T ss_pred cCCcccccCcchhhccC--CcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEeccc--HHHHHHHHHHH
Confidence 34578999999999987 57889999999999999999999987643 2233666544432 23345555554
No 270
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.00 E-value=0.0032 Score=50.08 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=65.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCe-EEEEECCCC-CCHHHHHHHHHhCCCCCcc-ccCcEEEEecCCHH-
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG-VLYICTESV-FPTARLAQLCELSPLAKPK-CSDKIFITHCYEFI- 135 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~g-vlyi~~e~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~- 135 (279)
...++.+++++|.||||.|.-++..++ ..|. |+++.+--. ..... ..++... .+... .-..+.. .....+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE-~~~l~~L-~v~~~~~g~gf~~-~~~~~~~ 100 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGE-RNLLEPH-GVEFQVMATGFTW-ETQNREA 100 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHH-HHHHGGG-TCEEEECCTTCCC-CGGGHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccH-HHHHHhC-CcEEEEccccccc-CCCCcHH
Confidence 345788888899999999999998886 3333 888754432 11111 1122222 11111 1111111 111111
Q ss_pred ---HHHHHHHhhhcc-CCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccc
Q psy2198 136 ---DLKRTLESQSGF-IENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205 (279)
Q Consensus 136 ---~l~~~i~~~~~~-~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~ 205 (279)
.....+...... ....+++||+|++.....-.+-+ ..++++.|.+ +-.+..||++....
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHh--CcCCCEEEEECCCC
Confidence 111122222111 55789999999998754433322 2235555542 22467888876543
No 271
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.99 E-value=0.00031 Score=60.17 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=27.7
Q ss_pred cCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 45 TGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 45 tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.|+..|-.. ..|++++|.|+||+|||||++.++ ..
T Consensus 154 ~gi~~L~~~-----l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 154 EGIDELVDY-----LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTHHHHHHH-----TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CCHHHHHhh-----ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 344555444 468999999999999999999998 54
No 272
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.99 E-value=0.00012 Score=65.41 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+++|+|+||+|||||++.+++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 99999999999999999999865
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00048 Score=58.61 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
-.++.+++|+|++|||||||+..++..+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35688999999999999999999998874
No 274
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.98 E-value=0.0045 Score=53.54 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
..+.++||+|+|||++++.++..+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHh
Confidence 3699999999999999999998875
No 275
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.0005 Score=54.90 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF 103 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~ 103 (279)
..++.|+|++||||||++..++..+. ..+++++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg-------~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG-------YPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT-------CCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-------CEEEeCCcCc
Confidence 45899999999999999999987762 4566666543
No 276
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.96 E-value=0.00035 Score=59.74 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEE
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYI 97 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi 97 (279)
+..|+++.|.||||+|||||++.+++... +..|.+.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~ 202 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSE 202 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceec
Confidence 34689999999999999999999988764 45555555
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.94 E-value=0.00046 Score=53.70 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEEC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICT 99 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~ 99 (279)
.++.|.|+|||||||++..++... .+..+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~------~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKN------PGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS------TTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhc------CCcEEecH
Confidence 478999999999999999988621 13566654
No 278
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.94 E-value=0.00067 Score=53.42 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
.+.+..+.|+|++||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999999876
No 279
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0052 Score=52.53 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
...+.++||+|+|||+++..++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 448999999999999999999864
No 280
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00036 Score=58.03 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=31.9
Q ss_pred ChhhhhhhCCCccC---CcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 47 SEKFDSILKGGIHA---GGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 47 ~~~LD~~L~gGl~~---G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
...|+.+ .--+.+ |+.+.|+|++||||||++..++..+.
T Consensus 32 ~~~l~~~-~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKK-AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHH-HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhh-hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456655 446778 99999999999999999999998763
No 281
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.91 E-value=0.0019 Score=63.08 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccC-----CCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCH-
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQ-----PHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEF- 134 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-----~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 134 (279)
..-+.|+||||+|||+++..++..+.... ....+++++...... +. .+ .-..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~--------~~--~g~~~ 248 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GA--------KY--RGEFE 248 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------------------------CHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cC--------cc--chHHH
Confidence 34578999999999999999998763100 122366665532210 00 00 0011
Q ss_pred HHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecc
Q psy2198 135 IDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQ 203 (279)
Q Consensus 135 ~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h 203 (279)
..+...+.... ...++.+++||++..+...... .......+.|+.+....++.+|.++.
T Consensus 249 ~~l~~~~~~~~--~~~~~~iL~IDEi~~l~~~~~~--------~g~~~~~~~L~~~l~~~~i~~I~at~ 307 (854)
T 1qvr_A 249 ERLKAVIQEVV--QSQGEVILFIDELHTVVGAGKA--------EGAVDAGNMLKPALARGELRLIGATT 307 (854)
T ss_dssp HHHHHHHHHHH--TTCSSEEEEECCC---------------------------HHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHH--hcCCCeEEEEecHHHHhccCCc--------cchHHHHHHHHHHHhCCCeEEEEecC
Confidence 22233333332 2235689999999986532211 01123445556665666777776554
No 282
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00062 Score=54.48 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+|.++.|.|++||||||++..++..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
No 283
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.91 E-value=0.0042 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
..+.|+||+|+|||+++..++....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988774
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.89 E-value=0.00068 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+..+.|+|++||||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998776
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.89 E-value=0.00052 Score=52.94 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQM 81 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l 81 (279)
++.|+|++||||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.00062 Score=53.79 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.++.++.|.|++||||||++..++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998765
No 287
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.88 E-value=0.00059 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+++|+|||||||||++..++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998765
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.88 E-value=0.00067 Score=53.05 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..+.++.|+|++||||||++..++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998765
No 289
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.88 E-value=0.0055 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..+.|+||+|+|||++++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 458999999999999999997765
No 290
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.87 E-value=0.00087 Score=53.67 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
...|.++.|.|++||||||++..++..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999997653
No 291
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.85 E-value=0.00018 Score=61.64 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=24.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.+|++++|+|+||+|||||++.++....
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 45799999999999999999999887653
No 292
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.85 E-value=0.0012 Score=54.10 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.8
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
...+|.++.|.|++||||||++..++..+.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999999998874
No 293
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.85 E-value=0.0023 Score=57.40 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=40.8
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.....+.||+..+|.++ -+-+|+-..|+|++|+|||+|+.+++....
T Consensus 130 ~~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 176 (465)
T 3vr4_D 130 YPDEFIQTGISAIDHLN--TLVRGQKLPVFSGSGLPHKELAAQIARQAT 176 (465)
T ss_dssp CCCCBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CcccccccCceEEeccc--ccccCCEEEEeCCCCcChHHHHHHHHHHHH
Confidence 34567899999999987 578899999999999999999998887764
No 294
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.85 E-value=0.0011 Score=61.33 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=32.2
Q ss_pred eeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccc
Q psy2198 152 VGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTS 206 (279)
Q Consensus 152 ~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~ 206 (279)
+-+||||++..++... + ..+.+.+..|-+.....|+.+|+++|-..
T Consensus 344 ~ivvVIDE~~~L~~~~--~-------~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV--G-------KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEEEESCCTTHHHHT--C-------HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred cEEEEEeCHHHHhhhh--h-------HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 4589999999876422 1 12344556666667789999999998654
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.84 E-value=0.00072 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.++.|.|++||||||++..++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.82 E-value=0.00077 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+|.++.|.|++||||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 297
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.81 E-value=0.00091 Score=54.34 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=27.2
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.-+....++.|.|||||||+|.+..|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3567888999999999999999999998774
No 298
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.81 E-value=0.00072 Score=58.64 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.+.|+||||+|||||++.++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999999876
No 299
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.79 E-value=0.0026 Score=57.10 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=41.6
Q ss_pred CCCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 37 DMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 37 ~~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
......+.||+..+|.++ -+-+|+-..|+|++|+|||+|+.+++....
T Consensus 125 ~~~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 125 RKPEQFIQTGISTIDVMN--TLVRGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CCCCCBCBCSCHHHHTTS--CCBTTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred cCccccccCcceeeeccc--ccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 334668899999999987 588899999999999999999998887764
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.79 E-value=0.00089 Score=53.70 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+|.++.|.|++||||||++..++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999765
No 301
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.79 E-value=0.00097 Score=58.27 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=28.3
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
..|..+|..+.|+||||+|||++++.++..+.
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45677789999999999999999999998874
No 302
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.77 E-value=0.0033 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.|+||+|+|||+++..++..+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999998763
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.76 E-value=0.00077 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~ 83 (279)
+++|+|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 304
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.76 E-value=8.1e-05 Score=61.04 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
++++|+||||||||||+..++.... +..|.+++++..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~ 64 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTT 64 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEE
Confidence 6788999999999999999998874 444545555543
No 305
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.76 E-value=0.0046 Score=52.78 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=30.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
+.+.-+.|+|+||+|||++++.++.... ......+++++...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCC
Confidence 3455689999999999999999887653 12333777777654
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.75 E-value=0.00062 Score=53.92 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..+.++.|.|++||||||++..++..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998765
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00087 Score=52.66 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEE
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~ 98 (279)
++.|.|++||||||++..++..+. .....+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD--NQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH--TTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEEE
Confidence 689999999999999999998763 1111266664
No 308
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.75 E-value=0.00066 Score=56.42 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=29.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
..+.++.|+|+|||||||++..++..+. .+.++++++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 4567899999999999999999987652 2456666653
No 309
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.74 E-value=0.0007 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=18.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.++.|.|++||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998765
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.71 E-value=0.0011 Score=53.60 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+|-++.|.|++||||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999998876
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.70 E-value=0.00098 Score=54.27 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..++.++.|.|++||||||++..++..+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4556789999999999999999998765
No 312
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.70 E-value=0.0011 Score=61.71 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=55.0
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cCC-CCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEE
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV-SQP-HKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIF 127 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~-~~~-~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~ 127 (279)
|...|...-....++.|+|++|+|||||+..++..... ... ..++.|++........-+..+......+... ....
T Consensus 136 L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~--~~~~ 213 (591)
T 1z6t_A 136 IQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD--ESFS 213 (591)
T ss_dssp HHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSS--CCSC
T ss_pred HHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccc--cccc
Confidence 44444322234679999999999999999998753210 011 2458888765442221122221100000000 0000
Q ss_pred EEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcc
Q psy2198 128 ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIA 161 (279)
Q Consensus 128 ~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~ 161 (279)
-....+.+.+...+...+. ...++-++|+|.+.
T Consensus 214 ~~~~~~~~~~~~~l~~~l~-~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 214 QRLPLNIEEAKDRLRILML-RKHPRSLLILDDVW 246 (591)
T ss_dssp SSCCCSHHHHHHHHHHHHH-HTCTTCEEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHc-cCCCCeEEEEeCCC
Confidence 0012345555555555432 12246789999885
No 313
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.69 E-value=0.00093 Score=53.30 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~ 83 (279)
+++|+|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 314
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.68 E-value=0.006 Score=48.39 Aligned_cols=84 Identities=10% Similarity=0.153 Sum_probs=50.5
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCccccCcEEEEecCCHHHHHHHH
Q psy2198 63 ITELS-GASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTL 141 (279)
Q Consensus 63 l~~I~-G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i 141 (279)
++.|+ +..|+||||++.+++..++ .....|+++|.....+ ...+... ...++.+..... ..+...+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~~---~~~~~~~-------~~~~~~~~~~~~-~~l~~~l 69 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQMS---LTNWSKA-------GKAAFDVFTAAS-EKDVYGI 69 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTCH---HHHHHTT-------SCCSSEEEECCS-HHHHHTH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCCC---HHHHHhc-------CCCCCcEEecCc-HHHHHHH
Confidence 45555 6678999999999999886 2333499999874322 2222221 112233333322 4555555
Q ss_pred HhhhccCCCCeeEEEEeCcchh
Q psy2198 142 ESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 142 ~~~~~~~~~~~~lvvID~l~~~ 163 (279)
.... ..++++|||.....
T Consensus 70 ~~l~----~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 70 RKDL----ADYDFAIVDGAGSL 87 (206)
T ss_dssp HHHT----TTSSEEEEECCSSS
T ss_pred HHhc----CCCCEEEEECCCCC
Confidence 5543 35799999987543
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.68 E-value=0.00097 Score=51.88 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.+.|.|+|||||||++..++..+. ..|++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-------~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-------LVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-------CCEEccc
Confidence 589999999999999999998763 4566654
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.68 E-value=0.0013 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+-++.|.|++||||||++..++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.0011 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.|.|++||||||++..++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.64 E-value=0.0011 Score=55.32 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.++.|+|+|||||||++..++..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999864
No 319
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.60 E-value=0.0016 Score=49.57 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+++|+||+|+||||++..+...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999877544
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.60 E-value=0.0016 Score=50.95 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
..-.++.|+|++|+|||||+..++..+.
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 3456899999999999999999988753
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.58 E-value=0.0012 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.++.|+|++||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998865
No 322
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.58 E-value=0.0014 Score=53.80 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.-++.|.||+||||||++..++..+. ..|++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg-------~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG-------ARYLDTGA 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCCc
Confidence 45899999999999999999987763 45566543
No 323
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.57 E-value=0.0013 Score=57.71 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=22.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
+++| +++|+||||+||||++..++..
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 4566 8999999999999999887754
No 324
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.57 E-value=0.00048 Score=55.03 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=27.8
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.|+. | .+.+|..++|+|++|+|||||+..+++..
T Consensus 16 ~~l~~-~--~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 16 PDIRH-L--PSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSGGG-S--SCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCHhH-C--CCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34554 3 57889999999999999999999887543
No 325
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.57 E-value=0.015 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++++|++|+|||||+..++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998654
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.52 E-value=0.014 Score=44.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++++|++|+|||||+..++..-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999988654
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.51 E-value=0.0018 Score=49.93 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-+++.|.|++||||||++..++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 328
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.51 E-value=0.0018 Score=58.16 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.+|++++|+||||+|||||+..++....
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45689999999999999999998887653
No 329
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.51 E-value=0.0016 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.++.|.|++||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999776
No 330
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.51 E-value=0.0014 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.|..++|.||+|+|||+|+..++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998654
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.50 E-value=0.0017 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 332
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.50 E-value=0.0025 Score=53.26 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=28.6
Q ss_pred hhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 50 LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
|...|.|..++...+.|+||||+|||+|+..++...
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344445555667789999999999999999998765
No 333
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.50 E-value=0.0014 Score=58.92 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=36.5
Q ss_pred hhhhhhCCC---c--cCC--cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 49 KFDSILKGG---I--HAG--GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gG---l--~~G--~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.|..++++. + ..+ .++.|+|++|+||||++..++..+. .....+++++...
T Consensus 80 ~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~--~~G~kVllv~~D~ 137 (432)
T 2v3c_C 80 ELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ--KRGLKPALIAADT 137 (432)
T ss_dssp HHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH--HHHCCEEEECCSC
T ss_pred HHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccc
Confidence 355566554 4 223 5999999999999999999998875 1222388887663
No 334
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.50 E-value=0.0017 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.240 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.|.|++||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 335
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.49 E-value=0.00079 Score=57.98 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++++|+|++|||||||++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999998764
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.48 E-value=0.0019 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..++.|.|++||||||++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998654
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.47 E-value=0.0018 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..++.|.|++||||||++..++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 338
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.47 E-value=0.0017 Score=60.06 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+|..+.|+||||+|||||++.++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999998876
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.46 E-value=0.0019 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 340
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.46 E-value=0.0016 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..++|+||||+|||||+..+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999988664
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.46 E-value=0.0017 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.++.|.|++||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 342
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0022 Score=52.57 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=24.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..+|.++.|+|++||||||++..++..+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678899999999999999999998765
No 343
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.44 E-value=0.0028 Score=55.08 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=31.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
...+.+++|+|+||+||||++..++.... ...+.+..++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~d 93 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIAVD 93 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEEC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeec
Confidence 46789999999999999999999998874 223335555544
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.43 E-value=0.0022 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.++-++.|.|+|||||||++..|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998765
No 345
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.42 E-value=0.00093 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+++|.|++||||||++..++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 346
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.42 E-value=0.0024 Score=59.92 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=32.5
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
-+..|+.+.|+||||+||||+++.++.... ....+.+++.+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~~~~~~~~ 97 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLP--TETLEDILVFPN 97 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSC--CSSCEEEEEECC
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCC--cccCCeEEEeCC
Confidence 467889999999999999999999998763 334455555444
No 347
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.42 E-value=0.0068 Score=51.63 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=32.8
Q ss_pred cCCcEEEEEcC-CCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 59 HAGGITELSGA-SGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 59 ~~G~l~~I~G~-~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.++.++.|+|+ +|+||||++.+++..++ .....|+.||...
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~ 143 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIA--QSDQKVLFIDADL 143 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHH--HTTCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHH--hCCCcEEEEECCC
Confidence 35678888886 79999999999999886 2333499999885
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.42 E-value=0.002 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.|+|+|||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998665
No 349
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.41 E-value=0.005 Score=56.39 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCCceeccCChhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHh
Q psy2198 38 MTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCEL 114 (279)
Q Consensus 38 ~~~~~i~tg~~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~ 114 (279)
....++.||+..+|.++ -+-+|+-..|.|++|+|||+|+.+++... ...-++|.-..+ ..+....++..
T Consensus 200 ~~~epl~TGirvID~l~--PigrGqr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGE--R~~Ev~e~~~~ 268 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLF--PVAMGGTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGE--RGNEMTDVLVE 268 (578)
T ss_dssp CSCSEECCSCHHHHTTS--CEETTCEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEE--CHHHHHHHHTT
T ss_pred cCCCcccccchhhhhcc--cccCCCEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecc--cHHHHHHHHHH
Confidence 45678999999999986 58899999999999999999999987664 222356653332 23444555544
No 350
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.40 E-value=0.002 Score=56.42 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=23.6
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
-+.+| ++.|+||||+||||++..++.
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 46778 999999999999999999886
No 351
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.39 E-value=0.0021 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
.+-++.|+|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 352
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.38 E-value=0.0037 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+++|+||+|||||||+..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999876
No 353
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.38 E-value=0.0023 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++-.+.|.|++||||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 354
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.38 E-value=0.0011 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.-+.|+||||+|||+++..++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3388999999999999999998763
No 355
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.37 E-value=0.014 Score=43.94 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988654
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.37 E-value=0.0021 Score=51.01 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
..++.|+|++||||||++..++.. |..+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~--------g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW--------GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT--------TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC--------CCEEEccc
Confidence 458999999999999999988853 34566654
No 357
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.35 E-value=0.0085 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..++.|+||+|||||+|+..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 358
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.34 E-value=0.024 Score=47.85 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=31.6
Q ss_pred CCcEEEEEcC-CCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 60 AGGITELSGA-SGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 60 ~G~l~~I~G~-~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
++.++.|+++ +|+||||++.+++..++ .....|+.||....
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA--~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVIS--QTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHH--TTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCCEEEEeccCC
Confidence 4567777765 79999999999999987 23334999998854
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.33 E-value=0.0026 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 360
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.31 E-value=0.012 Score=56.89 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=23.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+..|+.+.|.||+||||||++-.++...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999777775544
No 361
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=0.002 Score=55.52 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
+.+| +++|+|+||+|||+|+..+...
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 5567 9999999999999999988754
No 362
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.27 E-value=0.0025 Score=55.07 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..+.+++|+||+|+|||+|+..++..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999998654
No 363
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.27 E-value=0.018 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999988654
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.25 E-value=0.0028 Score=52.49 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccC---CCCeEEEEECCCC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQ---PHKGVLYICTESV 102 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~---~~~gvlyi~~e~~ 102 (279)
-+++|.|++||||||++..|+..+..+. ....++++++...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 4799999999999999999988653220 0123667777654
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.25 E-value=0.0031 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.++.|+|++|||||||+..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999998764
No 366
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.24 E-value=0.0044 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.++.|+||+||||||++..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999765
No 367
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.22 E-value=0.0035 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+..+.|.|++||||||++..++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 368
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.21 E-value=0.0031 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 369
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.21 E-value=0.012 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998654
No 370
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.20 E-value=0.0033 Score=52.51 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=24.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-.+..-+.|+||||+|||++++.++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4566789999999999999999998875
No 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.20 E-value=0.0079 Score=59.51 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccC-CCCeEEEEECCCCCCHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQ-PHKGVLYICTESVFPTARL 108 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~-~~~gvlyi~~e~~~~~~~~ 108 (279)
...++.|+|+.|.||||||..++....... -..+++|++.....+...+
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~I 198 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHH
Confidence 367999999999999999999885321001 1235899988766555443
No 372
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.20 E-value=0.0032 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.|.|++||||||++..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 373
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.19 E-value=0.0026 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.++|+|++|+|||||+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998765
No 374
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0046 Score=53.44 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=26.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|...+..|-.++ +.|+||||+|||++++.++..+.
T Consensus 48 ~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 48 VLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444332233 89999999999999999998763
No 375
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.16 E-value=0.003 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.11 E-value=0.0038 Score=49.62 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
....+++|+|++||||||++..++..+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999998764
No 377
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.11 E-value=0.011 Score=57.71 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
..+.|+||||+|||++++.++.... ......+++++...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhc
Confidence 5789999999999999999998774 12334888877654
No 378
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.09 E-value=0.006 Score=50.68 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
+.-+.|+|++|+|||++++.++.... ......+++++...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC
Confidence 35688999999999999999887653 12234888887654
No 379
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.08 E-value=0.0043 Score=49.67 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.+++|+||||+||||++..+...+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5999999999999999988765543
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.05 E-value=0.0039 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+.|.|++||||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 381
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.05 E-value=0.0086 Score=60.37 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=55.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCeEEEEECCCCCCHHH---HHHHHHhCCCCCccccCcEEEEecCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQ--VSQPHKGVLYICTESVFPTAR---LAQLCELSPLAKPKCSDKIFITHCYE 133 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~--~~~~~~gvlyi~~e~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (279)
....++.|+|+.|.||||||.+++.... ......+++|++.....+... +..+......... ... ....+
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~----~~~~~ 219 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES-FSQ----RLPLN 219 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCT-TCS----SCCSS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcc-ccc----CCCCC
Confidence 4457899999999999999998876531 111234588998776432221 2222221111000 000 11345
Q ss_pred HHHHHHHHHhhhccCCCCeeEEEEeCcch
Q psy2198 134 FIDLKRTLESQSGFIENKVGMIVIDSIAG 162 (279)
Q Consensus 134 ~~~l~~~i~~~~~~~~~~~~lvvID~l~~ 162 (279)
.+++.+.+...+. .+.+.-++|+|.+..
T Consensus 220 ~~~~~~~l~~~l~-~~~~~~LlvlDd~~~ 247 (1249)
T 3sfz_A 220 IEEAKDRLRVLML-RKHPRSLLILDDVWD 247 (1249)
T ss_dssp HHHHHHHHHHHTS-SSSCSCEEEEESCCC
T ss_pred HHHHHHHHHHHHh-ccCCCEEEEEecCCC
Confidence 6677777766553 223367999999753
No 382
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.05 E-value=0.0085 Score=52.93 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=30.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
...+.-+.|+|++|+||||++..++.... ...+.++++|..
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~~~~D~~ 72 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLREY--MQGSRVIIIDPE 72 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEESS
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHHHH--HCCCEEEEEeCC
Confidence 34677899999999999999999988764 222335555544
No 383
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.04 E-value=0.0035 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
+|.-++|+|++|+|||||+..++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 384
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.02 E-value=0.0046 Score=54.71 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=27.1
Q ss_pred CCCccCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 55 KGGIHAGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 55 ~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
-|-+..|..++|+|+||+|||||++.++..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 456788999999999999999999999983
No 385
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.02 E-value=0.0025 Score=54.11 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVF 103 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~ 103 (279)
++-+++|+|++||||||++..++..+. .....+.++++....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg--~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR--REGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH--HHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeeEeecchhh
Confidence 345899999999999999999987542 011126677766543
No 386
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.02 E-value=0.023 Score=44.67 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988654
No 387
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.01 E-value=0.0036 Score=55.97 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
....++.|+|+|||||||++..++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999887654
No 388
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.00 E-value=0.031 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||+|+..++..-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999988643
No 389
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.00 E-value=0.0043 Score=53.99 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=24.3
Q ss_pred ccCCcE--EEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGI--TELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l--~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+.+|+. +.|.|++|+||||++..++..+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456666 99999999999999998887654
No 390
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.00 E-value=0.0043 Score=48.30 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
.|.-++|.|+||+||||++..+...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667999999999999999988864
No 391
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.98 E-value=0.0042 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.++.|+||+|+|||+|+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 392
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.98 E-value=0.0041 Score=50.78 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred CCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 56 GGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 56 gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
|-..+|.++.|.|++||||||++..++..+.
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456889999999999999999999987763
No 393
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.97 E-value=0.005 Score=50.59 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=24.7
Q ss_pred hhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 53 ILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 53 ~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.|.+.-.+|.++.|.|++||||||++..++..+.
T Consensus 19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -------CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344555789999999999999999999988764
No 394
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.95 E-value=0.0044 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++.-+.|+||||+|||++++.++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45668999999999999999998776
No 395
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.95 E-value=0.0045 Score=52.37 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
+.-+.|+||||+|||++++.++.... ...+++++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchh
Confidence 44688999999999999999988762 2367776653
No 396
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.95 E-value=0.035 Score=52.95 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=30.7
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
++..|+.+.++||+|||||+.+...+..... ...+.++|+.-.
T Consensus 42 ~~~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~il~i~P~ 84 (715)
T 2va8_A 42 GLLEGNRLLLTSPTGSGKTLIAEMGIISFLL-KNGGKAIYVTPL 84 (715)
T ss_dssp TTTTTCCEEEECCTTSCHHHHHHHHHHHHHH-HSCSEEEEECSC
T ss_pred HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH-HCCCeEEEEeCc
Confidence 4566899999999999999998776654431 123448887544
No 397
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.94 E-value=0.004 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
.++.|.|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 398
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.93 E-value=0.0023 Score=62.72 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.5
Q ss_pred CeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 151 KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
+++++++|+.+.-.+. .....+.+.|+++++ .|.+||+++|......
T Consensus 884 ~p~lLILDEPTsGLD~-----------~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~ 930 (993)
T 2ygr_A 884 GRTVYILDEPTTGLHF-----------DDIRKLLNVINGLVD-KGNTVIVIEHNLDVIK 930 (993)
T ss_dssp SSEEEEEESTTTTCCH-----------HHHHHHHHHHHHHHH-TTCEEEEECCCHHHHT
T ss_pred CCCEEEEECCCCCCCH-----------HHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHH
Confidence 4699999999975431 234567777777765 5999999999876553
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.90 E-value=0.0045 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
..+++|+|++||||||++..++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 400
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.87 E-value=0.006 Score=49.28 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.+|.++.|.|++||||||++..++..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988774
No 401
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.87 E-value=0.048 Score=43.70 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=27.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e 100 (279)
.++.++. |.-+.+.+|+|+|||......+.........+ .++++...
T Consensus 44 ~i~~~~~-----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 44 AIMPIIE-----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp HHHHHHT-----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred HHHHHhc-----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 4455543 34589999999999977443333332111222 37777543
No 402
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.86 E-value=0.051 Score=41.83 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988654
No 403
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.76 E-value=0.0021 Score=62.79 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=33.9
Q ss_pred CeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccccccc
Q psy2198 151 KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208 (279)
Q Consensus 151 ~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~ 208 (279)
+++++++|+.+.-.+. .....+.+.|+++++ .|.|||+++|.....
T Consensus 866 ~p~lLILDEPTsGLD~-----------~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i 911 (972)
T 2r6f_A 866 GRTLYILDEPTTGLHV-----------DDIARLLDVLHRLVD-NGDTVLVIEHNLDVI 911 (972)
T ss_dssp SCEEEEEECTTTTCCH-----------HHHHHHHHHHHHHHH-TTCEEEEECCCHHHH
T ss_pred CCCEEEEECCCCCCCH-----------HHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH
Confidence 4699999999975431 234567777777765 599999999987654
No 404
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.76 E-value=0.0055 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
.++|+|++|+|||||+..++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 405
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.74 E-value=0.043 Score=45.24 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=28.5
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 63 ITEL-SGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 63 l~~I-~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
++.| .+..|+||||++.+++..++ .....|+++|...
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la--~~g~~VlliD~D~ 41 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALA--QLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH--hCCCcEEEEECCC
Confidence 4444 67889999999999999886 2333499999875
No 406
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.74 E-value=0.0017 Score=60.97 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++|+|++|||||||+..+++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999999875
No 407
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.74 E-value=0.018 Score=54.84 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=67.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc----------c-----cC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK----------C-----SD 124 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~----------~-----~~ 124 (279)
.|+.+.+.||+|+|||+.+...+..... ..+.++|+.-....-......+ .....++.. . ..
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~P~r~La~q~~~~~-~~~~~~g~~v~~~~G~~~~~~~~~~~~ 115 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGEKYESF-KKWEKIGLRIGISTGDYESRDEHLGDC 115 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHH-TTTTTTTCCEEEECSSCBCCSSCSTTC
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEeCcHHHHHHHHHHH-HHHHhcCCEEEEEeCCCCcchhhccCC
Confidence 4788999999999999988766554431 3345888875433222222222 111111111 0 11
Q ss_pred cEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEeccc
Q psy2198 125 KIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQV 204 (279)
Q Consensus 125 ~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~ 204 (279)
.+.+. +++.+...+.... ..-.++++||||+...+.... +...+..++..++++. .++-+|+.+-.
T Consensus 116 ~Iiv~---Tpe~l~~~l~~~~-~~l~~~~~vIiDE~H~l~~~~--------r~~~~~~ll~~l~~~~--~~~~ii~lSAT 181 (702)
T 2p6r_A 116 DIIVT---TSEKADSLIRNRA-SWIKAVSCLVVDEIHLLDSEK--------RGATLEILVTKMRRMN--KALRVIGLSAT 181 (702)
T ss_dssp SEEEE---EHHHHHHHHHTTC-SGGGGCCEEEETTGGGGGCTT--------THHHHHHHHHHHHHHC--TTCEEEEEECC
T ss_pred CEEEE---CHHHHHHHHHcCh-hHHhhcCEEEEeeeeecCCCC--------cccHHHHHHHHHHhcC--cCceEEEECCC
Confidence 22222 2344444444321 113478999999998764321 2234455556665432 35666666544
No 408
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.73 E-value=0.062 Score=41.75 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999988654
No 409
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.69 E-value=0.0067 Score=49.72 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+|.++.|.|.+||||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998775
No 410
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.69 E-value=0.013 Score=51.18 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
...+++|+|++|+|||||+..++..+. .....+..++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~--~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI--ERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH--hCCCceEEEecC
Confidence 345899999999999999999998875 122336666655
No 411
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.67 E-value=0.0073 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.+++|+||||+||||++..++..+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999775543
No 412
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.66 E-value=0.014 Score=49.79 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
....+.|+||+|+|||+++..++.... ...+++++..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 73 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPA 73 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccc
Confidence 345689999999999999999987652 2255555543
No 413
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.66 E-value=0.017 Score=47.62 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=31.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.+.-++.+.|.+|+||||++.+++..+. ....++.++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEeCCC
Confidence 4567899999999999999999998874 223478887664
No 414
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.64 E-value=0.0069 Score=53.13 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.+..-+.|+||||+|||++++.++.... ...+++++..
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~-----~~~~~~~~~~ 107 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATS 107 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEecchh
Confidence 3455689999999999999999987762 2356666543
No 415
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.64 E-value=0.0088 Score=48.43 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.+|.++.|.|++||||||.+..++..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999998874
No 416
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.61 E-value=0.064 Score=42.26 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=27.5
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e 100 (279)
.++.++. |.-+.+.+|+|+|||..+...+.........+ .++|+...
T Consensus 33 ~i~~~~~-----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 33 SIPIALS-----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp HHHHHHT-----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred HHHHHcc-----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 4555543 35689999999999976554443332111122 37777543
No 417
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.59 E-value=0.0055 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
-++|+|++|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998863
No 418
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.57 E-value=0.0078 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
..++.|.||+|+|||+|+..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999776
No 419
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.54 E-value=0.0094 Score=48.13 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+|.++.|.|++||||||.+..++..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988764
No 420
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.53 E-value=0.044 Score=44.59 Aligned_cols=40 Identities=20% Similarity=0.080 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CeEEEEECC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQPH-KGVLYICTE 100 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~-~gvlyi~~e 100 (279)
|.-+.+.+|+|+|||......+......... ..++++.-.
T Consensus 67 ~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 4558999999999997655444443221112 237777543
No 421
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.52 E-value=0.0039 Score=46.82 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
+.-+.|+|++|+|||++++.++..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 344899999999999999866643
No 422
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.51 E-value=0.18 Score=43.69 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=32.2
Q ss_pred hhhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECC
Q psy2198 48 EKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 48 ~~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e 100 (279)
..++.++.| .+.-+.+.+|+|+|||..+...+.........+ .++++...
T Consensus 34 ~~i~~~~~~---~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 34 RALPLLLHN---PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp HHHHHHHCS---SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred HHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 356666554 447789999999999987766555543222223 37777544
No 423
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.49 E-value=0.029 Score=53.65 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=66.3
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCC--CCCcc-------c-----
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSP--LAKPK-------C----- 122 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~--~~~~~-------~----- 122 (279)
++..|+.+.++||+|+|||+.+...+..... ...+.++|+.-....-......+ .... +.... .
T Consensus 35 ~~~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~~l~i~P~raLa~q~~~~~-~~l~~~g~~v~~~~G~~~~~~~~~ 112 (720)
T 2zj8_A 35 GILEGKNALISIPTASGKTLIAEIAMVHRIL-TQGGKAVYIVPLKALAEEKFQEF-QDWEKIGLRVAMATGDYDSKDEWL 112 (720)
T ss_dssp TGGGTCEEEEECCGGGCHHHHHHHHHHHHHH-HHCSEEEEECSSGGGHHHHHHHT-GGGGGGTCCEEEECSCSSCCCGGG
T ss_pred HhcCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHHHHHH-HHHHhcCCEEEEecCCCCcccccc
Confidence 3456889999999999999988655443321 12344888876544322222222 1100 11110 0
Q ss_pred -cCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEe
Q psy2198 123 -SDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICT 201 (279)
Q Consensus 123 -~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v 201 (279)
...+.+. +.+.+...+.... ..-.++++||||+...+.... +...+..++..++ .++-+|+.
T Consensus 113 ~~~~Iiv~---Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~~~--------r~~~~~~ll~~l~-----~~~~ii~l 175 (720)
T 2zj8_A 113 GKYDIIIA---TAEKFDSLLRHGS-SWIKDVKILVADEIHLIGSRD--------RGATLEVILAHML-----GKAQIIGL 175 (720)
T ss_dssp GGCSEEEE---CHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTT--------THHHHHHHHHHHB-----TTBEEEEE
T ss_pred CCCCEEEE---CHHHHHHHHHcCh-hhhhcCCEEEEECCcccCCCc--------ccHHHHHHHHHhh-----cCCeEEEE
Confidence 1122222 3344444443311 123478999999998763211 2234444555444 15666666
Q ss_pred ccc
Q psy2198 202 NQV 204 (279)
Q Consensus 202 ~h~ 204 (279)
+-.
T Consensus 176 SAT 178 (720)
T 2zj8_A 176 SAT 178 (720)
T ss_dssp ECC
T ss_pred cCC
Confidence 544
No 424
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.49 E-value=0.011 Score=48.16 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
.+|.++.|.|++||||||++..++..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988763
No 425
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.48 E-value=0.034 Score=52.72 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.++..++|+|++|+|||||+..++...
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 5678999999999999999999999765
No 426
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.48 E-value=0.017 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
|.++.|.|+.||||||.+..++..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999988773
No 427
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.46 E-value=0.014 Score=49.57 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
..+.++.|+|..|+||||++.+++..++ .....|+.+|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCC
Confidence 4577899999999999999999999886 23334999988743
No 428
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.46 E-value=0.011 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
-+.++||||+|||++++.++..+.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Confidence 388999999999999999998763
No 429
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.43 E-value=0.0067 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.|.-+.|+||||+|||++++.++...
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999998765
No 430
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=95.40 E-value=0.54 Score=35.81 Aligned_cols=135 Identities=10% Similarity=-0.041 Sum_probs=68.3
Q ss_pred CceeccCChhhhhhh-CCCccCCcEEEEEc-CCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCC
Q psy2198 40 EIVVSTGSEKFDSIL-KGGIHAGGITELSG-ASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL 117 (279)
Q Consensus 40 ~~~i~tg~~~LD~~L-~gGl~~G~l~~I~G-~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~ 117 (279)
.+.+|.|.+.+|..+ +||++.|.+++|.+ .+|.|=..|+.-+..........+-++||.........-+.+ .+
T Consensus 22 ~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~-----~G 96 (161)
T 1oft_A 22 SNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRR-----AG 96 (161)
T ss_dssp ---------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHH-----TT
T ss_pred CccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHH-----cC
Confidence 356799999999988 67899999999984 567776666665555543101234499997765544333322 24
Q ss_pred CCccccCcEEEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcE
Q psy2198 118 AKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIV 197 (279)
Q Consensus 118 ~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~ 197 (279)
+ ..+++.+.+..+..+....+.+.+ ..+....||.. +..+ +. . -.++|.--|++-++.
T Consensus 97 l---~~~rll~v~~~~~~daLwa~EqAL--rsG~~~aVl~W-l~~l-----~~-------~----~~RRLqlAAe~g~~~ 154 (161)
T 1oft_A 97 L---NRERILLLQAKDNAAALALSCEAL--RLGRSHTVVSW-LEPL-----SR-------A----ARKQLSRAAQLGQAQ 154 (161)
T ss_dssp C---CGGGEEEECCSSTTHHHHHHHHHH--HTTCEEEEEEC-CSSC-----CH-------H----HHHHHHHHHHHTTCE
T ss_pred C---CHHHEEEEECCChHHHHHHHHHHH--hcCCccEEEEC-CCcC-----Ch-------H----HHHHHHHHHHhCCCe
Confidence 4 346888888877777777777766 44666777764 2221 10 1 235566556666666
Q ss_pred EEEe
Q psy2198 198 VICT 201 (279)
Q Consensus 198 vi~v 201 (279)
.+++
T Consensus 155 ~fll 158 (161)
T 1oft_A 155 SLNI 158 (161)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 431
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.38 E-value=0.0089 Score=46.44 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
-.++|+|++|+|||||+..++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 432
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.021 Score=45.77 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
..+.|+|.+|+|||||+..++.... ....+..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~---~~~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG---NEVKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT---TTSCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc---cCCeEEEEecCC
Confidence 4789999999999999999998763 223355555543
No 433
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.35 E-value=0.007 Score=51.58 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
++..++|+|+||+|||||+..+++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999875
No 434
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.32 E-value=0.0047 Score=55.16 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=25.4
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
-++.+..++|+|+||+|||||+..++..
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 5778899999999999999999988875
No 435
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.31 E-value=0.011 Score=44.86 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999988653
No 436
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.30 E-value=0.012 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++.|+|+||+|||+++..++...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378999999999999998865443
No 437
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.28 E-value=0.011 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++++|++|+|||||+..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999988643
No 438
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.26 E-value=0.0053 Score=51.08 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 59 HAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
.++.++.|.|++||||||++..++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999887665
No 439
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.26 E-value=0.076 Score=41.83 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=28.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ----PHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~----~~~gvlyi~~e 100 (279)
.++.++. |.-+.+.+|+|+|||..+...+....... ....++|+...
T Consensus 31 ~i~~~~~-----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 31 ALPLALE-----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp HHHHHHT-----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred HHHHHcC-----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 4455543 35589999999999987555444433211 11227777543
No 440
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.25 E-value=0.061 Score=43.80 Aligned_cols=40 Identities=23% Similarity=0.119 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CC-eEEEEECC
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSLQVSQP-HK-GVLYICTE 100 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~-gvlyi~~e 100 (279)
|.-+.+.+|+|+|||......+........ .+ .++|+.-.
T Consensus 66 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 455899999999999765443333221111 22 27777544
No 441
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.24 E-value=0.012 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+-++.|.|++||||||++..++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999988765
No 442
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.22 E-value=0.011 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.++|++|+|||||+..++...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998654
No 443
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.20 E-value=0.1 Score=42.15 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q psy2198 60 AGGITELSGASGCGKTQLCLQMC 82 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~ 82 (279)
.|+-+.+.+|+|+|||......+
T Consensus 61 ~~~~~li~a~TGsGKT~~~~~~~ 83 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLAFLVPV 83 (236)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHH
Confidence 35668999999999998655433
No 444
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.012 Score=45.99 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.--++|+|++|+|||||+..++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999988754
No 445
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.18 E-value=0.066 Score=43.96 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e 100 (279)
.|.-+.+.+|+|+|||......+.........+ .++++.-.
T Consensus 79 ~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 79 QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 346789999999999986554443332212222 27777543
No 446
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.17 E-value=0.0075 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy2198 64 TELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~ 84 (279)
++|+|++|+|||||+..+++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 489999999999999998865
No 447
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.11 E-value=0.013 Score=44.33 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++++|++|+|||||+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988654
No 448
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.10 E-value=0.012 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
-++|+|++|+|||+|+..++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3789999999999999988754
No 449
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.10 E-value=0.013 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988643
No 450
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.09 E-value=0.0071 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-+.|+||||+|||++++.++...
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 39999999999999999998865
No 451
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.08 E-value=0.014 Score=44.40 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999988653
No 452
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.08 E-value=0.013 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999988754
No 453
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.08 E-value=0.013 Score=44.49 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy2198 64 TELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~ 84 (279)
++|+|++|+|||||+..++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999998854
No 454
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.07 E-value=0.15 Score=44.51 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=30.2
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEEC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICT 99 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~ 99 (279)
.+..++.| .+.-+.+.+|+|+|||..+...+.........+ .++++.-
T Consensus 55 ~i~~~~~~---~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 103 (412)
T 3fht_A 55 ALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 103 (412)
T ss_dssp HHHHHHSS---SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred HHHHHhcC---CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECC
Confidence 45555543 457899999999999987655444443222222 3777744
No 455
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.06 E-value=0.014 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988654
No 456
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.013 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
-++++|++|+|||||+..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998864
No 457
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.04 E-value=0.013 Score=44.43 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy2198 64 TELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~ 83 (279)
++|+|++|+|||||+..++.
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998864
No 458
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.02 E-value=0.14 Score=46.06 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=51.7
Q ss_pred cCCcEEEEEcCCCCcHHH-HHHHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcc----c-------cCcE
Q psy2198 59 HAGGITELSGASGCGKTQ-LCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK----C-------SDKI 126 (279)
Q Consensus 59 ~~G~l~~I~G~~GsGKTt-l~~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~----~-------~~~i 126 (279)
..++++.+.||+|||||+ ++..++..+. .....++|+.-. .+-..++.....+.... . ...+
T Consensus 17 ~~~~~~lv~a~TGsGKT~~~~~~~l~~~~--~~~~~~lvl~Pt----r~La~Q~~~~l~g~~v~~~~~~~~~~~~~~~~i 90 (451)
T 2jlq_A 17 RKKRLTIMDLHPGAGKTKRILPSIVREAL--LRRLRTLILAPT----RVVAAEMEEALRGLPIRYQTPAVKSDHTGREIV 90 (451)
T ss_dssp STTCEEEECCCTTSSCCTTHHHHHHHHHH--HTTCCEEEEESS----HHHHHHHHHHTTTSCEEECCTTCSCCCCSSCCE
T ss_pred hcCCeEEEECCCCCCHhhHHHHHHHHHHH--hcCCcEEEECCC----HHHHHHHHHHhcCceeeeeeccccccCCCCceE
Confidence 447888999999999999 4665554443 123348887643 33345555544333221 0 1122
Q ss_pred EEEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 127 FITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 127 ~~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
.+.. ...+...+.... .-..++++|||+...+
T Consensus 91 ~~~t---~~~l~~~l~~~~--~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 91 DLMC---HATFTTRLLSST--RVPNYNLIVMDEAHFT 122 (451)
T ss_dssp EEEE---HHHHHHHHHHCS--CCCCCSEEEEETTTCC
T ss_pred EEEC---hHHHHHHhhCcc--cccCCCEEEEeCCccC
Confidence 2221 223333333221 3357899999998854
No 459
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.00 E-value=0.01 Score=57.55 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=32.1
Q ss_pred eEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHcCcEEEEecccccccC
Q psy2198 153 GMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT 209 (279)
Q Consensus 153 ~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~~~~vi~v~h~~~~~~ 209 (279)
.++|+|+.+...... ....+...|+++. +.|.|||+++|-.....
T Consensus 401 ~llILDEPT~~Ld~~-----------~~~~L~~~l~~L~-~~G~TVIvVeHdl~~l~ 445 (842)
T 2vf7_A 401 VVYVLDEPSAGLHPA-----------DTEALLSALENLK-RGGNSLFVVEHDLDVIR 445 (842)
T ss_dssp CEEEEECTTTTCCGG-----------GHHHHHHHHHHHH-TTTCEEEEECCCHHHHT
T ss_pred eEEEeeCccccCCHH-----------HHHHHHHHHHHHH-HcCCEEEEEcCCHHHHH
Confidence 599999999865322 2345666666664 47999999999986554
No 460
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.99 E-value=0.015 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++|+|++|+|||||+..+....
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999988643
No 461
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.99 E-value=0.0096 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
++|+|+||+|||||+..+++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999987653
No 462
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.96 E-value=0.026 Score=46.76 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
++.|.|..|+||||++.+++..++ .....|+.+|....
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCC
Confidence 567789999999999999999886 22334999988743
No 463
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.096 Score=43.34 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=17.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMC 82 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~ 82 (279)
|+-+.+.+|+|+|||..+...+
T Consensus 91 ~~~~lv~a~TGsGKT~~~~l~~ 112 (262)
T 3ly5_A 91 GRDLLAAAKTGSGKTLAFLIPA 112 (262)
T ss_dssp TCCCEECCCTTSCHHHHHHHHH
T ss_pred CCcEEEEccCCCCchHHHHHHH
Confidence 4558999999999998655433
No 464
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.93 E-value=0.016 Score=43.87 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988643
No 465
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.90 E-value=0.16 Score=45.42 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHhcccCCCCeEEEEECCCCCCHHHHHHHHHhCCCCCcccc-----------CcEE
Q psy2198 60 AGGITELSGASGCGKTQLC-LQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCS-----------DKIF 127 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~-~~l~~~~~~~~~~~gvlyi~~e~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~ 127 (279)
.|+.+.+.||+|+|||..+ ..++..+. .....++|+.-.. ....|+.....++..... ..+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~--~~g~~~lvl~Pt~----~La~Q~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 74 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV--KKRLRTVILAPTR----VVASEMYEALRGEPIRYMTPAVQSERTGNEIVD 74 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH--HTTCCEEEEESSH----HHHHHHHHHTTTSCEEEC---------CCCSEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEECcHH----HHHHHHHHHhCCCeEEEEecCccccCCCCceEE
Confidence 3788999999999999976 33332332 1223478876432 234455444333222100 0111
Q ss_pred EEecCCHHHHHHHHHhhhccCCCCeeEEEEeCcchh
Q psy2198 128 ITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGI 163 (279)
Q Consensus 128 ~~~~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~ 163 (279)
+. +...+...+.... ...+++++|||+...+
T Consensus 75 ~~---~~~~l~~~l~~~~--~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 75 FM---CHSTFTMKLLQGV--RVPNYNLYIMDEAHFL 105 (431)
T ss_dssp EE---EHHHHHHHHHHTC--CCCCCSEEEEESTTCC
T ss_pred EE---chHHHHHHHhcCc--cccCCCEEEEeCCccC
Confidence 11 1222332222211 3457899999998863
No 466
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.89 E-value=0.17 Score=43.26 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=30.8
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e 100 (279)
.++.++.| +.-+.+.+|+|+|||..+...+...........++++...
T Consensus 36 ~i~~~~~~----~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~ 83 (367)
T 1hv8_A 36 VIPLFLND----EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPT 83 (367)
T ss_dssp HHHHHHHT----CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSC
T ss_pred HHHHHhCC----CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCC
Confidence 44555433 3578899999999999877766655422122337777543
No 467
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.88 E-value=0.017 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
-.+|.|+|||||||++..++..+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999988763
No 468
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.88 E-value=0.018 Score=43.45 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++++|++|+|||+|+..++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998654
No 469
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=94.86 E-value=0.34 Score=39.69 Aligned_cols=125 Identities=10% Similarity=0.071 Sum_probs=66.2
Q ss_pred CcEEEEEcC-CCCcHHHHHHHHHHHhcccCCCCeEEEEE----CCC-----CCCHHHHHHHHHhCC-CCCccccCcEEEE
Q psy2198 61 GGITELSGA-SGCGKTQLCLQMCLSLQVSQPHKGVLYIC----TES-----VFPTARLAQLCELSP-LAKPKCSDKIFIT 129 (279)
Q Consensus 61 G~l~~I~G~-~GsGKTtl~~~l~~~~~~~~~~~gvlyi~----~e~-----~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 129 (279)
...+.|+|. +|+|||+++..++..+. .....|.|+- +.. ..+...+.+-.+... +........+.+.
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~--~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~ 98 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCN--ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYH 98 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH--hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEEC
Confidence 345667776 89999999999998875 2223377774 121 112222211112222 3322211222221
Q ss_pred e---------------cCCHHHHHHHHHhhhccCCCCeeEEEEeCcchhhccccccchhhHHHHHHHHHHHHHHHHHHHc
Q psy2198 130 H---------------CYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKH 194 (279)
Q Consensus 130 ~---------------~~~~~~l~~~i~~~~~~~~~~~~lvvID~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~la~~~ 194 (279)
. ....+++.+.+.+.. .+.+++|||....++... ... .....+++..
T Consensus 99 ~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~----~~~D~vlIEGagGl~~pl-~~~-------------~~~adlA~~l 160 (242)
T 3qxc_A 99 KVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT----KTYDLVIVEGAGGLCVPI-TLE-------------ENMLDFALKL 160 (242)
T ss_dssp SSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG----GTCSEEEEECCSCTTCBS-SSS-------------CBHHHHHHHH
T ss_pred CCCChHHHHHHcCCCCcCCHHHHHHHHHHHH----hcCCEEEEECCCCccccc-ccc-------------chHHHHHHHc
Confidence 1 224555666555543 467999999988776431 111 0112344556
Q ss_pred CcEEEEecccc
Q psy2198 195 RIVVICTNQVT 205 (279)
Q Consensus 195 ~~~vi~v~h~~ 205 (279)
+..||+|....
T Consensus 161 ~~pVILV~~~~ 171 (242)
T 3qxc_A 161 KAKMLLISHDN 171 (242)
T ss_dssp TCEEEEEECCS
T ss_pred CCCEEEEEcCC
Confidence 78888877554
No 470
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.84 E-value=0.017 Score=43.82 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.--++|+|++|+|||||+..++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999999987643
No 471
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.82 E-value=0.017 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 61 GGITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
|.-++|.|+||+||||++..+...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 788999999999999999999864
No 472
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.80 E-value=0.019 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~ 83 (279)
.+++|+|+||+|||+++-.+..
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999998875
No 473
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.80 E-value=0.018 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 474
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.79 E-value=0.012 Score=53.72 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=24.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+..|.-+.|+||||+|||++++.++...
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 4456689999999999999999988766
No 475
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.79 E-value=0.017 Score=44.34 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988763
No 476
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.79 E-value=0.019 Score=46.22 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 62 GITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
-.++|+|.+|+|||||+..++....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999998763
No 477
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.78 E-value=0.015 Score=43.99 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy2198 64 TELSGASGCGKTQLCLQMCL 83 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~ 83 (279)
++|+|++|+|||||+..++.
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999998764
No 478
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.77 E-value=0.017 Score=44.17 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988543
No 479
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.77 E-value=0.026 Score=45.95 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=29.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 64 TELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
+.|.|..|+||||++.+++..++ .....|+.+|....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCC
Confidence 45689999999999999999986 22334999988753
No 480
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.77 E-value=0.017 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy2198 63 ITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
-++|+|++|+|||+|+..++..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998854
No 481
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.76 E-value=0.018 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 482
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.75 E-value=0.039 Score=46.16 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=33.1
Q ss_pred cCCcEEEEEcC-CCCcHHHHHHHHHHHhcccCCCCeEEEEECCCC
Q psy2198 59 HAGGITELSGA-SGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102 (279)
Q Consensus 59 ~~G~l~~I~G~-~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~~ 102 (279)
.+..++.|+++ +|+||||++.+++..++ .....|+.+|....
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA--~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYA--QAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCC
Confidence 35678888876 79999999999999887 23334999999843
No 483
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.75 E-value=0.028 Score=48.16 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=33.6
Q ss_pred CccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCeEEEEECCC
Q psy2198 57 GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101 (279)
Q Consensus 57 Gl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~gvlyi~~e~ 101 (279)
.+..-++++|+|.-|+||||.+.+++..++ .....|+.+|..-
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA--~~GkkVllID~Dp 86 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDP 86 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESS
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 345567999999999999999999999887 2333499999883
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.74 E-value=0.02 Score=51.89 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
...-+.|+||||+|||+++..++..+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 445678999999999999999998863
No 485
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.73 E-value=0.019 Score=43.88 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999988654
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.72 E-value=0.024 Score=43.42 Aligned_cols=26 Identities=23% Similarity=0.173 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
+.-.++|+|++|+|||||+..++..-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45578999999999999999987643
No 487
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.72 E-value=0.016 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
--++|+|++|+|||||+..++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998754
No 488
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.72 E-value=0.019 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999888653
No 489
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.70 E-value=0.019 Score=44.79 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999988754
No 490
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.70 E-value=0.025 Score=53.45 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=24.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q psy2198 58 IHAGGITELSGASGCGKTQLCLQMCLSLQ 86 (279)
Q Consensus 58 l~~G~l~~I~G~~GsGKTtl~~~l~~~~~ 86 (279)
+....+.+|.||||+|||+.+..++..+.
T Consensus 202 l~~~~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 202 LSQKELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp HHCSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hcCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999998888877765
No 491
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.69 E-value=0.15 Score=45.91 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-eEEEEECC
Q psy2198 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 60 ~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~~~-gvlyi~~e 100 (279)
.+.-+.+.||+|+|||......+.........+ .++++.-.
T Consensus 130 ~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 358899999999999987554444333211122 37877544
No 492
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.68 E-value=0.23 Score=41.99 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHH-HHHHHhcccCCCC-eEEEEECC
Q psy2198 61 GGITELSGASGCGKTQLCL-QMCLSLQVSQPHK-GVLYICTE 100 (279)
Q Consensus 61 G~l~~I~G~~GsGKTtl~~-~l~~~~~~~~~~~-gvlyi~~e 100 (279)
|.-+.+.+|+|+|||.... .+...+. ....+ .++++.-.
T Consensus 131 ~~~~l~~a~TGsGKT~a~~lp~l~~l~-~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCLSPT 171 (300)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHCC-TTSCSCCEEEECSS
T ss_pred CCeEEEECCCCCCccHHHHHHHHHhhh-ccCCCceEEEEcCc
Confidence 4789999999999997543 3333332 11122 37777543
No 493
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.67 E-value=0.019 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 494
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.66 E-value=0.02 Score=43.97 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999988653
No 495
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.66 E-value=0.22 Score=45.41 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=31.1
Q ss_pred hhhhhhCCCccCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCeEEEEECCC
Q psy2198 49 KFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP-HKGVLYICTES 101 (279)
Q Consensus 49 ~LD~~L~gGl~~G~l~~I~G~~GsGKTtl~~~l~~~~~~~~~-~~gvlyi~~e~ 101 (279)
.++.++.| .+.-+.+.+|+|+|||..+...+........ ...++|+.-..
T Consensus 149 ai~~i~~~---~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 149 ALPLLLSN---PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp SHHHHHCS---SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred HHHHHHcC---CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 44555544 3578999999999999876554444432212 22388876543
No 496
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.65 E-value=0.015 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..+++..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 497
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.65 E-value=0.017 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999988754
No 498
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.65 E-value=0.017 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy2198 64 TELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 64 ~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
++|+|++|+|||||+..++..-
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999988643
No 499
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.021 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q psy2198 63 ITELSGASGCGKTQLCLQMCLSL 85 (279)
Q Consensus 63 l~~I~G~~GsGKTtl~~~l~~~~ 85 (279)
-++|+|++|+|||||+..++..-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999988654
No 500
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.62 E-value=0.019 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q psy2198 62 GITELSGASGCGKTQLCLQMCLS 84 (279)
Q Consensus 62 ~l~~I~G~~GsGKTtl~~~l~~~ 84 (279)
--++++|++|+|||||+..++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999998864
Done!