RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2198
(279 letters)
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 90.6 bits (223), Expect = 4e-22
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 13/200 (6%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQV----SQPHKGVLYIC 98
++TGS++FD +L GGI + ITE G GKTQL +C++ Q+ P +++I
Sbjct: 19 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 78
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCY---EFIDLKRTLESQSGFIENKVGMI 155
TE+ F RL + + + D + Y ++L + ++ ++
Sbjct: 79 TENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLL 138
Query: 156 VIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT-----SAMT 209
+IDSI +FR + + +R + + L ++S ++ + V TNQ+T +
Sbjct: 139 IIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 198
Query: 210 HSDKNIPALGLTYERAHDMR 229
+D P G A R
Sbjct: 199 QADPKKPIGGHILAHASTTR 218
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 85.5 bits (210), Expect = 2e-20
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 19/206 (9%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG--------- 93
+ST S + DS+L GG+ + +TE +G G GKTQ+ Q C++LQ +
Sbjct: 16 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 75
Query: 94 -----VLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI 148
+YI TE F R+ Q+ E + + D F+ Y E I
Sbjct: 76 VAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLI 135
Query: 149 --ENKVGMIVIDSIAGIFRNTYAEDKYV-QRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205
N + ++VIDS+ FRN Y + +R + L++L+ VV+ TNQV+
Sbjct: 136 QEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVS 195
Query: 206 SAMTH--SDKNIPALGLTYERAHDMR 229
+ G A R
Sbjct: 196 AKPDAFFGMAEQAIGGHIVGHAATFR 221
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 84.8 bits (208), Expect = 5e-20
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 10/202 (4%)
Query: 41 IVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLY 96
I ++TGS+ D++L GG+ G ITEL G GK+QLC + ++ Q+ G LY
Sbjct: 14 ICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 73
Query: 97 ICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIE-NKVGMI 155
I TE F RL + + L + + Y R L++ + + ++ +I
Sbjct: 74 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 133
Query: 156 VIDSIAGIFRNTY-AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKN 214
V+DS+ ++R + + R + L L+ + + V+ TNQV + +
Sbjct: 134 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAF 193
Query: 215 IPALGLTYERAHDMRDLAHYLH 236
P ++ +AH
Sbjct: 194 NP----DPKKPTGGNIMAHSST 211
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 83.6 bits (205), Expect = 1e-19
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 13/200 (6%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYIC 98
+STGS+ D +L GGI ITE+ G G GKTQL + + +Q+ G V++I
Sbjct: 18 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 77
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI------ENKV 152
TE+ F R+ ++ + L + I++ + ++ I + V
Sbjct: 78 TENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPV 137
Query: 153 GMIVIDSIAGIFRNTYAED-KYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMT-- 209
++++DS+ FR+ Y +R + LH L+ + I V TNQV +
Sbjct: 138 KLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAF 197
Query: 210 HSDKNIPALGLTYERAHDMR 229
D P G + +R
Sbjct: 198 FGDPTRPIGGHILAHSATLR 217
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 77.9 bits (190), Expect = 1e-17
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKG----VLYIC 98
++TGS++ D +L+GGI G ITE+ G GKTQ+C + ++ Q+ G +YI
Sbjct: 5 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 64
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIE-NKVGMIVI 157
TE F RL + E L+ D + + + L S + ++ ++++
Sbjct: 65 TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIV 124
Query: 158 DSIAGIFRNTYAEDKYV-QRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTH 210
DS ++R Y+ + R + L L+ + + V+ TNQV + +
Sbjct: 125 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG 178
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 71.5 bits (175), Expect = 3e-15
Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 19/192 (9%)
Query: 21 KDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCL 79
K K ++G++ E +STGS D L GG+ G I E+ G GKT L L
Sbjct: 14 KQFGKGSIMRLGEDRSMDVE-TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 72
Query: 80 QMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKR 139
Q+ + Q + K +I E +L D + +
Sbjct: 73 QVIAAAQ--REGKTCAFIDAEHALDPIYARKLGV--------DIDNLLCSQPDTGEQALE 122
Query: 140 TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQ-----RAHDMRDLAHYLHELSIKH 194
++ + V +IV+DS+A + E + A M L +
Sbjct: 123 ICDALAR--SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 180
Query: 195 RIVVICTNQVTS 206
++I NQ+
Sbjct: 181 NTLLIFINQIRM 192
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 68.4 bits (167), Expect = 3e-14
Identities = 40/173 (23%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 42 VVSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100
VVSTGS D L GGI G ITE+ G GKT L L + Q + +I E
Sbjct: 37 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAE 94
Query: 101 SVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSI 160
A+ ++ D++ ++ +E + ++V+DS+
Sbjct: 95 HAL-DPVYARALGVNT-------DELLVSQPDNGEQALEIMELLVR--SGAIDVVVVDSV 144
Query: 161 AGIFRNTYAEDKYVQ-----RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAM 208
A + E +A M L + K I NQV +
Sbjct: 145 AALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI 197
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 269
Score = 68.0 bits (166), Expect = 6e-14
Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 42/185 (22%)
Query: 42 VVSTGSEKFDSIL-KGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTE 100
V+ TGS D L GG+ G + E+ G GKT + L + Q +I E
Sbjct: 40 VIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAE 97
Query: 101 SVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIE----------- 149
+L +D L SQ E
Sbjct: 98 HALDPDYAKKL----------------------GVDTDSLLVSQPDTGEQALEIADMLIR 135
Query: 150 -NKVGMIVIDSIAGIFRNTYAEDKYVQ-----RAHDMRDLAHYLHELSIKHRIVVICTNQ 203
+ ++VIDS+A + E + +A M + I NQ
Sbjct: 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 195
Query: 204 VTSAM 208
+ +
Sbjct: 196 LRDKI 200
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 65.7 bits (159), Expect = 2e-13
Identities = 37/210 (17%), Positives = 69/210 (32%), Gaps = 13/210 (6%)
Query: 39 TEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
+ + VS+G + D + GG I +GA+G GKT L + + + + +L+
Sbjct: 4 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-ANKERAILFAY 62
Query: 99 TESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFI-ENKVGMIVI 157
ES R A + + + + E L+ L+ I + K I I
Sbjct: 63 EESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAI 122
Query: 158 DSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPA 217
DS++ + R + R + + + I + TN M +
Sbjct: 123 DSLSALARGV--------SNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGA---HSIT 171
Query: 218 LGLTYERAHDMRDLAHYLHEISIKHWIVVI 247
+ L + + I V
Sbjct: 172 DSHISTITDTIILLQYVEIRGEMSRAINVF 201
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 60.0 bits (144), Expect = 3e-11
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 9/155 (5%)
Query: 43 VSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102
+ T E FD I GG+ G T +SG SG GKT +Q + + GV E+
Sbjct: 8 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 67
Query: 103 FPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKV---------G 153
+ A+ + + + + ++
Sbjct: 68 QDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRAR 127
Query: 154 MIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLH 188
+ IDS+ +F+ A + + +
Sbjct: 128 RVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG 162
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 47.0 bits (110), Expect = 8e-07
Identities = 22/201 (10%), Positives = 49/201 (24%), Gaps = 21/201 (10%)
Query: 33 KNPIDMTEIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPH- 91
PI++ E + D +L + AG + L G GK+ L LQ+ +
Sbjct: 3 HKPINILE-AFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLL 60
Query: 92 -------KGVLYICTESVFPT-----ARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKR 139
V+Y+ E L I +
Sbjct: 61 EVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAP 120
Query: 140 TLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVI 199
++V+D++ + + M + + ++ ++
Sbjct: 121 EWFDGLKRAAEGRRLMVLDTLRRFHI------EEENASGPMAQVIGRMEAIAADTGCSIV 174
Query: 200 CTNQVTSAMTHSDKNIPALGL 220
+ +
Sbjct: 175 FLHHASKGAAMMGAGDQQQAS 195
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 40.8 bits (94), Expect = 9e-05
Identities = 24/203 (11%), Positives = 50/203 (24%), Gaps = 3/203 (1%)
Query: 42 VVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTES 101
++ +G + G G + ++ SG GK+ Q L + K V E
Sbjct: 17 LLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKK-VGLAMLE- 73
Query: 102 VFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIA 161
L L + + SD + + E +
Sbjct: 74 ESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD 133
Query: 162 GIFRNTYAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLT 221
+ + + D + S + + N +T + L +
Sbjct: 134 RLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI 193
Query: 222 YERAHDMRDLAHYLHEISIKHWI 244
+ + AH +
Sbjct: 194 CHLKNPDKGKAHEEGRPVSITDL 216
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 38.9 bits (90), Expect = 3e-04
Identities = 38/235 (16%), Positives = 66/235 (28%), Gaps = 36/235 (15%)
Query: 38 MTEIVVSTGSEKFDS----ILKG---GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP 90
M I+V S+ F L I G + G SG GKT +++ L P
Sbjct: 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTF-MRIIAGLD--VP 57
Query: 91 HKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIEN 150
G LY V +L P+ + + EN
Sbjct: 58 STGELYFDDRLVASNGKLIV--------PPEDRKIGMVFQTWALYPNLTAF-------EN 102
Query: 151 KVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAHYL----HELSIKHRIVVICTNQVTS 206
+ ++ K V+ + D+ H L ELS + V +
Sbjct: 103 IAFPLTNMKMSKEEI-----RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157
Query: 207 AMTHSDKNIPALGLTYERAHDMRDLAHYLHEISIKHWIVVICTNQVTSAMTHSDK 261
+ + P L R L + +++ ++ +D+
Sbjct: 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQS--RLGVTLLVVSHDPADIFAIADR 210
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 33.4 bits (76), Expect = 0.021
Identities = 26/206 (12%), Positives = 77/206 (37%), Gaps = 28/206 (13%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV--FPTARLAQLCELS 115
+ AG I L G +G GK+ L L + KG + + + + +LA
Sbjct: 22 VRAGEILHLVGPNGAGKSTL-LARMAGM---TSGKGSIQFAGQPLEAWSATKLALHRAYL 77
Query: 116 PLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQ 175
+ F T + ++ L + ++++ + + G + +D G N + ++ Q
Sbjct: 78 SQQQT----PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW-Q 132
Query: 176 RAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYL 235
R + + + +++++ ++ +++ + + + L
Sbjct: 133 RVRLAAVVLQITPQANPAGQLLLL--DEPMNSLDV------------AQQSALDKI---L 175
Query: 236 HEISIKHWIVVICTNQVTSAMTHSDK 261
+ + +V+ ++ + + H+ +
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHAHR 201
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 31.5 bits (70), Expect = 0.10
Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 5/144 (3%)
Query: 66 LSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDK 125
+G G GKT + + L ++ K VL + T+ P + + Q+ + +
Sbjct: 13 FTGKGGVGKTSISCATAIRL--AEQGKRVLLVSTD---PASNVGQVFSQTIGNTIQAIAS 67
Query: 126 IFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAH 185
+ E + ++ ++ G++ D ++ I A D
Sbjct: 68 VPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLL 127
Query: 186 YLHELSIKHRIVVICTNQVTSAMT 209
L + ++ T +
Sbjct: 128 TDASLLTRFDHIIFDTAPTGHTIR 151
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 31.3 bits (71), Expect = 0.11
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 36 IDMTEIVVSTGSEKFDS--ILKG---GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP 90
I M E+ + +++F + + I G L G SGCGKT L+M L+ +P
Sbjct: 2 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTT-LRMIAGLE--EP 58
Query: 91 HKGVLYIC 98
+G +Y
Sbjct: 59 TEGRIYFG 66
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 31.0 bits (70), Expect = 0.13
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 33 KNPIDMTEIVVSTGSEKFDSILKG---GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQ 89
K+ D + S + +LK I G + ++G++G GKT L L + L +
Sbjct: 31 KHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSL-LMLILGEL--E 87
Query: 90 PHKGVLYI 97
+G++
Sbjct: 88 ASEGIIKH 95
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 30.7 bits (69), Expect = 0.14
Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 15/206 (7%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPL 117
++ G +T + G +G GK+ L + + + +G +Y + A+L +
Sbjct: 27 VNKGDVTLIIGPNGSGKSTL-INVITGFL--KADEGRVYFENKD-ITNKEPAELYHYGIV 82
Query: 118 AKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRA 177
+ + E + + +S + + + K ++
Sbjct: 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK----AFKILEFL 138
Query: 178 HDMRDLAHYLHELSI-KHRIVVICTNQVTSAMTH-SDKNIPALGLTYERAHDMRDLAHYL 235
ELS + ++V I +T+ D+ P G+ AHD+ + L
Sbjct: 139 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE--PIAGVAPGLAHDIFNHVLEL 196
Query: 236 HEISIKHWIVVICTNQVTSAMTHSDK 261
K +I +++ + + D
Sbjct: 197 KA---KGITFLIIEHRLDIVLNYIDH 219
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 30.6 bits (69), Expect = 0.19
Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 70/258 (27%)
Query: 34 NPIDMTEIVVSTGSEKFDSILKG---GIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP 90
N + + ++ G + +LKG AG + + G+SG GK+ L+ L+ +P
Sbjct: 1 NKLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTF-LRCINFLE--KP 54
Query: 91 HKGVLYICTESVFPTARLAQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIEN 150
+G + + +++ + LK ++Q +
Sbjct: 55 SEGAIIVNGQNINLVRD-------------------------KDGQLKVADKNQLRLLRT 89
Query: 151 KVGMI-----------VIDSIAGIFRNTYAEDK--YVQRAHDM--------RDLAHYLHE 189
++ M+ V++++ K +RA R Y
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 149
Query: 190 LSI--KHRIVVICTNQVTSAMTHSDKNI----PALGLTYERAHDMRDLAHYLHEISIKHW 243
LS + R+ + A+ + P L E ++ + L E +
Sbjct: 150 LSGGQQQRVSIAR------ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGK 200
Query: 244 IVVICTNQVTSAMTHSDK 261
+V+ T+++ A S
Sbjct: 201 TMVVVTHEMGFARHVSSH 218
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 29.8 bits (66), Expect = 0.30
Identities = 19/181 (10%), Positives = 49/181 (27%), Gaps = 24/181 (13%)
Query: 51 DSILKGGIHAGGITELSGASGCGKTQLCLQMC--LSLQVSQPHKGVLYICTESVFPTARL 108
+ + L G +G GK+ + Q + + ++++ P +
Sbjct: 34 KKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 93
Query: 109 AQLCELSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTY 168
L D + + + I+ + V D
Sbjct: 94 DLF-TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFD---------- 142
Query: 169 AEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQ-VTSAMTHSDKNIPALGLTYERAHD 227
D+ ++ R +V + +++A + + + I L + +D
Sbjct: 143 ----------DVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYD 192
Query: 228 M 228
Sbjct: 193 F 193
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 29.4 bits (65), Expect = 0.43
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 54 LKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCE 113
L+ + I + G +G GKT++ ++ + + +
Sbjct: 43 LRHEVTPKNI-LMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 101
Query: 114 LSPLAKPKCSDKIFITHCYEFID 136
L+ A + FID
Sbjct: 102 LTDSAGGAI--DAVEQNGIVFID 122
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 29.1 bits (65), Expect = 0.44
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102
+ AG I + GASG GK+ L + L +P +G + + + +
Sbjct: 28 VPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTEGSVLVDGQEL 69
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 29.0 bits (65), Expect = 0.46
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102
I G + G SG GK+ + L + L +P +G +YI
Sbjct: 28 IKEGEFVSIMGPSGSGKSTM-LNIIGCLD--KPTEGEVYIDNIKT 69
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 28.2 bits (63), Expect = 1.1
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 20 VKDLKKKKAFQVGKNPIDMTEIVVSTGSEKFDSILKG---GIHAGGITELSGASGCGKTQ 76
+K+ + ++ + ID+ + + ILK I G G SG GK+
Sbjct: 1 IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAP-ILKDINLSIEKGETVAFVGMSGGGKST 59
Query: 77 LCLQMCLSLQVSQPHKGVLYICTESV 102
L + + G + I ++
Sbjct: 60 L-INLIPRFY--DVTSGQILIDGHNI 82
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.3 bits (62), Expect = 1.1
Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 13/155 (8%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQ--LCELS 115
+T + G GKT+ L + + + L + PT +A L
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIV-REAIKRGLRTLILA-----PTRVVAAEMEEALR 59
Query: 116 PLAKPKCSDKIFITHCYEFIDLKRT-----LESQSGFIENKVGMIVIDSIAGIFRNTYAE 170
L + I H I + S +I++D + A
Sbjct: 60 GLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAA 119
Query: 171 DKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVT 205
Y+ +M + A + +
Sbjct: 120 RGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAP 154
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.1 bits (62), Expect = 1.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 58 IHAGGITELSGASGCGKTQL 77
+ +G + G +G GKT
Sbjct: 23 VESGEYFVILGPTGAGKTLF 42
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.6 bits (61), Expect = 1.3
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYIC 98
I G I L G +G GKT L++ +L +P G++ +
Sbjct: 25 IEEGEIFGLIGPNGAGKTTT-LRIISTLI--KPSSGIVTVF 62
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.9 bits (62), Expect = 1.3
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESV 102
I +G SG GK+ + + QP G + I + +
Sbjct: 25 AQPNSIIAFAGPSGGGKSTI-FSLLERFY--QPTAGEITIDGQPI 66
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.6 bits (61), Expect = 1.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 58 IHAGGITELSGASGCGKTQL 77
IH G G SGCGK+ L
Sbjct: 23 IHEGEFVVFVGPSGCGKSTL 42
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.6 bits (61), Expect = 1.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 58 IHAGGITELSGASGCGKTQL 77
+ G I L GA+G GKT
Sbjct: 29 VPRGQIVTLIGANGAGKTTT 48
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 27.6 bits (61), Expect = 1.5
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 38 MTEIVVSTGSEKFDS--ILKG---GIHAGGITELSGASGCGKTQL 77
M + + + F ++ + G L G SGCGKT
Sbjct: 1 MAGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTT 45
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.6 bits (57), Expect = 2.0
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 11/145 (7%)
Query: 58 IHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFP-TARLAQLCELSP 116
+ G T L G GKT+ L L+ + + ++ T V ++
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 117 LAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQR 176
+ + T +I++D + + A
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIA------- 116
Query: 177 AHDMRDLAHYLHELSIKHRIVVICT 201
R A + + I++ T
Sbjct: 117 ---ARGWAAHRARANESATILMTAT 138
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 27.1 bits (60), Expect = 2.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 58 IHAGGITELSGASGCGKTQLC 78
I AG L G SG GK+ +
Sbjct: 38 IPAGKTVALVGRSGSGKSTIA 58
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.0 bits (58), Expect = 2.3
Identities = 25/215 (11%), Positives = 59/215 (27%), Gaps = 7/215 (3%)
Query: 62 GITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPK 121
GI + G +G GK+ L + + L K + V L K +
Sbjct: 24 GINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYR 83
Query: 122 CSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMR 181
+ + + I + L G V +I+ + ++ + +
Sbjct: 84 ITRRFLKGYSSGEIHAMKRLV---GNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQ 140
Query: 182 DLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEISIK 241
+ E + + + I ++ RA + + + E +
Sbjct: 141 GQIDAILESAREAALSKIGELAS---EIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKER 197
Query: 242 HWIVVICTNQVTSAMTHSDKNIPALGLSWSNLIIL 276
+ + + + +L+IL
Sbjct: 198 PLTFLSGGER-IALGLAFRLAMSLYLAGEISLLIL 231
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.8 bits (58), Expect = 2.4
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 40 EIVVSTGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVS 88
E + ++ + L G G GKT L + L V+
Sbjct: 15 ERLKQKLRVYLEAAKARKEPLEHLL-LFGPPGLGKTTLAHVIAHELGVN 62
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.8 bits (59), Expect = 2.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 58 IHAGGITELSGASGCGKTQL 77
I G + G +G GKT L
Sbjct: 24 IEKGNVVNFHGPNGIGKTTL 43
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.8 bits (59), Expect = 2.9
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 33 KNPIDMTEIVVSTGSEKFDSILKG---GIHAGGITELSGASGCGKTQL 77
+ + ++ + + +L+G + G +T L G +G GK+ +
Sbjct: 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 56
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.7 bits (57), Expect = 3.3
Identities = 23/192 (11%), Positives = 49/192 (25%), Gaps = 2/192 (1%)
Query: 50 FDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLA 109
+ L+ H L G G GKT ++ + + V TA +
Sbjct: 32 LGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG 91
Query: 110 QLCE--LSPLAKPKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNT 167
++ P + S F+ E + + + ++ + + +
Sbjct: 92 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEA 151
Query: 168 YAEDKYVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHD 227
+ + L+ L R ++ S T L +
Sbjct: 152 DKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE 211
Query: 228 MRDLAHYLHEIS 239
L I+
Sbjct: 212 GSYSEDILQMIA 223
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 261
Score = 26.3 bits (58), Expect = 3.6
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 221 TYERAH---DMRDLAHYLHEISIKHWIVVICTNQVTSAMTH 258
TY R ++ L+ L + HW++V T ++
Sbjct: 9 TYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSG 49
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 26.2 bits (58), Expect = 3.7
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 45 TGSEKFDSILKGGIHAGGITELSGASGCGKTQLCLQMCLSLQVSQP 90
TG + D + GG L G +G GKT L +++ ++ +
Sbjct: 54 TGIKVVDLLAPYA--KGGKIGLFGGAGVGKTVLIMELINNVAKAHG 97
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 26.1 bits (57), Expect = 4.0
Identities = 23/202 (11%), Positives = 54/202 (26%), Gaps = 28/202 (13%)
Query: 60 AGGITELSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAK 119
L G +G GK+ L++ + +P +G + + + P
Sbjct: 23 GRDYCVLLGPTGAGKSVF-LELIAGIV--KPDRGEVRLNGADITP-------------LP 66
Query: 120 PKCSDKIFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHD 179
P+ F+ Y + V + D + ++
Sbjct: 67 PERRGIGFVPQDYALFPHLSVYR-NIAYGLRNVERVERDRRV---------REMAEKLGI 116
Query: 180 MRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEIS 239
L LS R V + + P + + + + ++
Sbjct: 117 AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR-- 174
Query: 240 IKHWIVVICTNQVTSAMTHSDK 261
++ T+ + A +D+
Sbjct: 175 EFDVPILHVTHDLIEAAMLADE 196
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.0 bits (57), Expect = 4.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 58 IHAGGITELSGASGCGKTQL 77
I G + + G SG GK+ L
Sbjct: 26 IKQGEVIGIVGRSGSGKSTL 45
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 26.1 bits (57), Expect = 4.6
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 173 YVQRAHDMRDLAHYLHELSIKHRIVVICTNQVTSAMTHSDKNIPAL-GLTYERAHDMRDL 231
++++ D+ ++ +L I +I + + + D+ + A G+ R ++
Sbjct: 95 FIRKRSDVIEIREHLKAHGG-ENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEI 153
Query: 232 AHYLHEISIKHWIV--------VICTNQVTSAMTHS 259
+ K I VI + +M +
Sbjct: 154 PVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKN 189
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.8 bits (56), Expect = 4.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 53 ILKGGIHAGGITELSGASGCGKTQLCLQMC 82
+LK + L+G G GKT L M
Sbjct: 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGML 54
>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P
{Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 25.9 bits (57), Expect = 4.6
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 221 TYERAH---DMRDLAHYLHEISIKHWIVV 246
TY R ++ +A+ L + HW+VV
Sbjct: 10 TYSRPVQKAELTRMANTLLHVPNLHWLVV 38
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar
phosphotransferase system HPr-binding (sub)domain
{Escherichia coli [TaxId: 562]}
Length = 123
Score = 25.2 bits (55), Expect = 4.9
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 156 VIDSIAGIFRNTYAEDKYVQ-RAHDMRDLAH 185
VI+ A +D+Y++ RA D+RD+
Sbjct: 86 VIEGQASALEE--LDDEYLKERAADVRDIGK 114
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.4 bits (54), Expect = 6.3
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 66 LSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQL 111
L+G G GKT L + L+ S + E R+
Sbjct: 6 LTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFD 50
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 25.1 bits (53), Expect = 9.2
Identities = 13/188 (6%), Positives = 42/188 (22%), Gaps = 6/188 (3%)
Query: 66 LSGASGCGKTQLCLQMCLSLQVSQPHKGVLYICTESVFPTARLAQLCELSPLAKPKCSDK 125
G G GKT L + + +G+ A + + +
Sbjct: 51 SIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ 110
Query: 126 IFITHCYEFIDLKRTLESQSGFIENKVGMIVIDSIAGIFRNTYAEDKYVQRAHDMRDLAH 185
+ + + + ++ ++ ++
Sbjct: 111 VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP---- 166
Query: 186 YLHELSIKHRIVVICTNQVTSAMTHSDKNIPALGLTYERAHDMRDLAHYLHEISIKHWIV 245
+ ++ + V + +K + H + L+ I + +
Sbjct: 167 --SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAEL 224
Query: 246 VICTNQVT 253
+
Sbjct: 225 GLRDTVWE 232
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 24.9 bits (53), Expect = 9.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 60 AGGITELSGASGCGKTQLC 78
G I LSG G GK+ +
Sbjct: 3 GGNILLLSGHPGSGKSTIA 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,028,476
Number of extensions: 46080
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 76
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.7 bits)