BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2199
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma
           Gondii, 55.M00007
 pdb|3EOE|B Chain B, Crystal Structure Of Pyruvate Kinase From Toxoplasma
           Gondii, 55.M00007
 pdb|3EOE|C Chain C, Crystal Structure Of Pyruvate Kinase From Toxoplasma
           Gondii, 55.M00007
 pdb|3EOE|D Chain D, Crystal Structure Of Pyruvate Kinase From Toxoplasma
           Gondii, 55.M00007
 pdb|3GG8|A Chain A, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
           N Terminal Truncated
 pdb|3GG8|B Chain B, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
           N Terminal Truncated
 pdb|3GG8|C Chain C, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
           N Terminal Truncated
 pdb|3GG8|D Chain D, Crystal Structure Of The Toxoplasma Gondii Pyruvate Kinase
           N Terminal Truncated
          Length = 511

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 21/88 (23%)

Query: 9   MSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCI---GEKTFDK------EYVCQY 59
           ++ ++++   I+   NP+ T  +   V+  V+DG  C+   GE    +      E + + 
Sbjct: 310 ITATQMLESMIK---NPRPTRAEAADVANAVLDGTDCVMLSGETANGEFPVITVETMARI 366

Query: 60  CYQTEPWQHTCVK-----KASCSSVDSP 82
           CY+ E    TCV      +A C +V  P
Sbjct: 367 CYEAE----TCVDYPALYRAMCLAVPPP 390


>pdb|1TOC|R Chain R, Structure Of Serine Proteinase
 pdb|1TOC|S Chain S, Structure Of Serine Proteinase
 pdb|1TOC|T Chain T, Structure Of Serine Proteinase
 pdb|1TOC|U Chain U, Structure Of Serine Proteinase
          Length = 120

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 5   HPLNMSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCIGEKTFDKEYVCQ 58
           H   M  S L  P   C+     TY D    +C V+      GE TF+ E  CQ
Sbjct: 58  HSSEMHSSCLGDPPTSCAEGTDITYYDSDSKTCKVLAASCPSGENTFESEVECQ 111


>pdb|2H1T|A Chain A, Crystal Structure Of A Duf1089 Family Protein (Pa1994)
           From Pseudomonas Aeruginosa At 1.80 A Resolution
 pdb|2H1T|B Chain B, Crystal Structure Of A Duf1089 Family Protein (Pa1994)
           From Pseudomonas Aeruginosa At 1.80 A Resolution
          Length = 188

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 139 GHWQEGIGKVF-SFGG---LGVWTIIDVILIAIRYLGPADGS 176
           GHWQ+G G+   +F G   + +W         IR LG ADG 
Sbjct: 84  GHWQDGDGEALPAFDGCLDIDIWPSPFTNTFPIRRLGLADGQ 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.482 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,145,101
Number of Sequences: 62578
Number of extensions: 253339
Number of successful extensions: 520
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 5
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)