Query psy2199
Match_columns 179
No_of_seqs 172 out of 881
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:45:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sg1_X Tumor necrosis factor r 20.6 39 0.0013 25.5 1.5 39 5-46 81-119 (161)
2 3qd6_R CD40L receptor, tumor n 17.3 21 0.00073 27.7 -0.7 83 5-101 85-169 (177)
3 3k51_B Decoy receptor 3; DCR3, 15.7 74 0.0025 24.8 2.2 31 67-100 138-168 (176)
4 3u3p_A Tumor necrosis factor r 14.6 1.1E+02 0.0039 26.5 3.2 70 25-106 107-178 (313)
5 4fhq_A Tumor necrosis factor r 12.1 30 0.001 26.1 -1.1 44 5-48 85-129 (134)
6 1ext_A Tumor necrosis factor r 11.5 62 0.0021 24.6 0.5 54 5-59 88-142 (162)
7 2kcn_A Antifungal protein; NMR 10.3 1.3E+02 0.0043 20.2 1.6 27 24-50 11-41 (55)
8 2lx0_A Membrane fusion protein 9.9 1.1E+02 0.0037 18.1 1.1 18 142-159 9-26 (32)
9 2a2u_A Protein (alpha-2U-globu 8.7 48 0.0017 24.4 -1.0 14 121-134 5-18 (181)
10 1a8d_A Tetanus neurotoxin; clo 8.2 81 0.0028 29.0 0.1 14 127-140 401-414 (452)
No 1
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=20.60 E-value=39 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCCCCCcccCCCCceeccCCCCcccCCceEEEEEecCCcccC
Q psy2199 5 HPLNMSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCI 46 (179)
Q Consensus 5 cp~~~~Cs~l~~~c~~c~~~~~C~yg~~~~~~C~~~~~v~C~ 46 (179)
|+.+..+++....|..| ..|.-|..+...|+......|.
T Consensus 81 C~~G~y~~~~~~~C~~C---~~C~~G~~v~~~ct~~~dt~C~ 119 (161)
T 1sg1_X 81 CAYGYYQDEETGHCEAC---SVCEVGSGLVFSCQDKQNTVCE 119 (161)
T ss_dssp ECTTEEECTTTCCEEEC---CCBCTTEEEEECCBTTBCCEEE
T ss_pred cCCCeEeCCCCccccCC---ccCCCCCeecccCCCCCCCccc
Confidence 44455554455566666 4577777777777766555564
No 2
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=17.29 E-value=21 Score=27.74 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCCCCCcccCCCCceeccCCCCcccCCceEEEEEecCCcccCCC--CeeeeecceeeeeecCCcccccccCCCCCcCCCC
Q psy2199 5 HPLNMSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCIGE--KTFDKEYVCQYCYQTEPWQHTCVKKASCSSVDSP 82 (179)
Q Consensus 5 cp~~~~Cs~l~~~c~~c~~~~~C~yg~~~~~~C~~~~~v~C~g~--~~~~~~~~CryC~q~~~~~~~c~~~~~C~~~~~~ 82 (179)
|+.+..|++ ..|..|.-...|.-|+.+...|+....+.|..= ..|.... .....|.+-.+|....
T Consensus 85 C~~G~~~~~--~~c~~C~~~~~C~pG~~v~~~~t~~~dt~C~~C~~Gtfs~~~---------s~~~~C~p~t~C~~~g-- 151 (177)
T 3qd6_R 85 CEEGWHCTS--EACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS---------SAFEKCHPWTSCETKD-- 151 (177)
T ss_dssp ECTTEEESS--SSCCCEEECCCC------CCCCCSSCCCCCCC-------------------------------------
T ss_pred cCCCcEECC--CCCccccccCcCCCCcEEEeCCccCCCCccccCCCCcccCCC---------CCCCcCcCcccCCCCC--
Confidence 556666653 567777766788888888888888777777642 2333211 1234565556665421
Q ss_pred CceeeEEEEEcCCeeeecc
Q psy2199 83 PVYYKTNCTVQNDVLCLGS 101 (179)
Q Consensus 83 ~~~~~v~C~v~~~i~C~G~ 101 (179)
......++...|..|.-.
T Consensus 152 -~~~~~~gt~~sD~vC~~~ 169 (177)
T 3qd6_R 152 -LVVQQAGTNKTDVVCGPQ 169 (177)
T ss_dssp -------------------
T ss_pred -EEEEcCCCCCcccccCCC
Confidence 234566777777777543
No 3
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=15.73 E-value=74 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.491 Sum_probs=17.1
Q ss_pred ccccccCCCCCcCCCCCceeeEEEEEcCCeeeec
Q psy2199 67 QHTCVKKASCSSVDSPPVYYKTNCTVQNDVLCLG 100 (179)
Q Consensus 67 ~~~c~~~~~C~~~~~~~~~~~v~C~v~~~i~C~G 100 (179)
...|.+-.+|.... ....+..+...|+.|..
T Consensus 138 ~~~C~p~t~C~~~G---~~~~~~gT~~sD~vC~~ 168 (176)
T 3k51_B 138 SEQCQPHRNCTALG---LALNVPGSSSHDTLCTS 168 (176)
T ss_dssp SCCCEECCCSTTTT---CCEEEECSSSSCEEEC-
T ss_pred CCcccCCCccCCCC---eeEecCCCcccccccCC
Confidence 34565556665432 33456666666777653
No 4
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=14.59 E-value=1.1e+02 Score=26.53 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=36.4
Q ss_pred CCcccCCceEEEEEecCCcccCC--CCeeeeecceeeeeecCCcccccccCCCCCcCCCCCceeeEEEEEcCCeeeeccc
Q psy2199 25 PKCTYGDLTKVSCTVVDGVSCIG--EKTFDKEYVCQYCYQTEPWQHTCVKKASCSSVDSPPVYYKTNCTVQNDVLCLGSR 102 (179)
Q Consensus 25 ~~C~yg~~~~~~C~~~~~v~C~g--~~~~~~~~~CryC~q~~~~~~~c~~~~~C~~~~~~~~~~~v~C~v~~~i~C~G~r 102 (179)
..|.-|+.+...|+....+.|.. +..|.... .....|.+-.+|.... ....+.|+...|..|....
T Consensus 107 t~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~---------Ss~~~C~pcT~C~~~G---~~v~~~GT~tSDtVC~~c~ 174 (313)
T 3u3p_A 107 TVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP---------SSVMKCKAYTDCLSQN---LVVIKPGTKETDNVCGTLP 174 (313)
T ss_dssp CCBCTTEEEEECCCSSSCCEEEECCTTEECCSC---------BSSCCCEECCCSGGGT---CEEEECCCSSSCCEEECC-
T ss_pred ccCCCCCeeeecCCCCCCCccccCCCCeecCCC---------CCCcccccCCccCCCC---ceEecCCCCccCCccCCCC
Confidence 45666666666665555555441 22322210 1245666666776532 3457778888888887665
Q ss_pred eeec
Q psy2199 103 RFLK 106 (179)
Q Consensus 103 ~F~k 106 (179)
.+..
T Consensus 175 ~~~~ 178 (313)
T 3u3p_A 175 SFSS 178 (313)
T ss_dssp ----
T ss_pred cccc
Confidence 5544
No 5
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=12.13 E-value=30 Score=26.11 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=13.9
Q ss_pred CCCCCCcccC-CCCceeccCCCCcccCCceEEEEEecCCcccCCC
Q psy2199 5 HPLNMSCSEL-VYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCIGE 48 (179)
Q Consensus 5 cp~~~~Cs~l-~~~c~~c~~~~~C~yg~~~~~~C~~~~~v~C~g~ 48 (179)
|+.+.-|+.. ...|..|.-...|.-|+.|...+++...+.|.|-
T Consensus 85 C~~G~~c~~~~~~~C~~C~~~s~C~pG~~v~~~gT~~~d~~~~~~ 129 (134)
T 4fhq_A 85 CSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCTGH 129 (134)
T ss_dssp ECTTEEEEEEETTEEEEEEEC------------------------
T ss_pred CCCCCEecCCCCCCCcCCCCCCcCcCCCeEccCCCCCcccccccc
Confidence 6667777654 4568888888899999999999999988888774
No 6
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=11.50 E-value=62 Score=24.63 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=31.6
Q ss_pred CCCCCCcccCCCCceeccCCCCcccCCceEEEEEecCCcccCC-CCeeeeecceee
Q psy2199 5 HPLNMSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCIG-EKTFDKEYVCQY 59 (179)
Q Consensus 5 cp~~~~Cs~l~~~c~~c~~~~~C~yg~~~~~~C~~~~~v~C~g-~~~~~~~~~Cry 59 (179)
|+.+..|......+..|.--..|.-|. |...|+....+.|.= +..|.....|+-
T Consensus 88 C~~G~y~~~~~~~~~~C~~C~~C~~G~-v~~~ct~~~dtvC~C~~G~ys~~~~C~~ 142 (162)
T 1ext_A 88 CRKNQYRHYWSENLFQCFNCSLCLNGT-VHLSCQEKQNTVCTCHAGFFLRENECVS 142 (162)
T ss_dssp CCTTEEEEEEETTEEEEEECCCCTTEE-EEECCBTTBCCEEEECTTEEEETTEEEE
T ss_pred CCCCceeccCCCCcccccCCCcCCCCE-EeccccCCCCccccCCCCeecCCCcCCC
Confidence 555555653334455555556688887 777888777777751 134444444443
No 7
>2kcn_A Antifungal protein; NMR {Penicillium chrysogenum}
Probab=10.29 E-value=1.3e+02 Score=20.17 Aligned_cols=27 Identities=26% Similarity=0.658 Sum_probs=22.8
Q ss_pred CCCccc----CCceEEEEEecCCcccCCCCe
Q psy2199 24 NPKCTY----GDLTKVSCTVVDGVSCIGEKT 50 (179)
Q Consensus 24 ~~~C~y----g~~~~~~C~~~~~v~C~g~~~ 50 (179)
...|.| |+...+.|....+-.|.-++.
T Consensus 11 ~n~CkY~~~~GK~~i~kC~~~aN~kC~kD~n 41 (55)
T 2kcn_A 11 KNECKYKNDAGKDTFIKCPKFDNKKCTKDNN 41 (55)
T ss_dssp CCEEEEEETTTEEEEEECSCTTTCCCCSTTC
T ss_pred ccEEEEecCCCcEeEEeCcchhccccCCCCC
Confidence 458999 999999999988888987764
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=9.93 E-value=1.1e+02 Score=18.09 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=12.1
Q ss_pred hhhhHHHhhhcccchhhh
Q psy2199 142 QEGIGKVFSFGGLGVWTI 159 (179)
Q Consensus 142 ~~Gi~~L~t~Gg~gIw~l 159 (179)
..|+.-|+|+-.||.|.+
T Consensus 9 iaglvalltflafgfwlf 26 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777766777653
No 9
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=8.67 E-value=48 Score=24.39 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHhcCccee
Q psy2199 121 ALILSITMGGFGAD 134 (179)
Q Consensus 121 a~lLs~flG~fG~h 134 (179)
.++|+++|+.+.+|
T Consensus 5 ~llL~l~l~L~~a~ 18 (181)
T 2a2u_A 5 LLLLCLGLTLVCGH 18 (181)
T ss_dssp --------------
T ss_pred hHHHHHHHHHHhhc
Confidence 45667666666553
No 10
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*
Probab=8.15 E-value=81 Score=28.98 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.4
Q ss_pred HhcCcceeeEEeCC
Q psy2199 127 TMGGFGADRFYLGH 140 (179)
Q Consensus 127 flG~fG~hRFYLG~ 140 (179)
=+|.+|+|||+.+.
T Consensus 401 ~~gl~g~h~~~~~~ 414 (452)
T 1a8d_A 401 SLGLVGTHNGQIGN 414 (452)
T ss_dssp EEEEEEEEEECSTT
T ss_pred ceeeEeeecccccc
Confidence 36999999999665
Done!