RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2199
(179 letters)
>gnl|CDD|218469 pfam05154, TM2, TM2 domain. This family is composed of a pair of
transmembrane alpha helices connected by a short linker.
The function of this domain is unknown, however it
occurs in a wide range or protein contexts.
Length = 51
Score = 59.9 bits (146), Expect = 7e-13
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 115 GYRWSTALILSITMGGFGADRFYLGHWQEGIGK-VFSFGGLGVWTIIDVI 163
AL+LS+ +GGFG RFYLG GI + +G LG+W +ID+I
Sbjct: 2 KKSKLIALLLSLFLGGFGVHRFYLGKTGTGILYLLTFWGILGIWWLIDLI 51
>gnl|CDD|222840 PHA01886, PHA01886, TM2 domain-containing protein.
Length = 78
Score = 43.0 bits (101), Expect = 3e-06
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 119 STALILSITMGGFGADRFYLGHWQEGIGKVFSFGGLGVWTIIDVILIA 166
+ A +L +G FG RFY G+ GI +F+ G G+ ID+ L A
Sbjct: 5 AIAYVLWFFLGFFGIHRFYTGNIATGIIWLFTGGLFGIGWFIDLFLTA 52
>gnl|CDD|225196 COG2314, XynA, Predicted membrane protein [Function unknown].
Length = 95
Score = 33.5 bits (77), Expect = 0.014
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 121 ALILSITMGGFGADRFYLGHWQEGIGKVFSFGGLGVWTIIDVILIAIRYLG 171
A +L+ G FG +FYLG +GI L WT I +IL+ I YLG
Sbjct: 13 AGLLAALFGIFGLHKFYLGQGGKGILT-----LLLNWTGIFLILLLIGYLG 58
>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate
dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an
enzyme of the zinc-dependent alcohol dehydrogenase-like
family of medium chain dehydrogenases/reductases
catalyzes the conversion of 6-hydroxyhexanoate and
NAD(+) to 6-oxohexanoate + NADH and H+.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding
domains, at the active site, and coenzyme binding
induces a conformational closing of this cleft. Coenzyme
binding typically precedes and contributes to substrate
binding. In human ADH catalysis, the zinc ion helps
coordinate the alcohol, followed by deprotonation of a
histidine, the ribose of NAD, a serine, then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 350
Score = 29.1 bits (66), Expect = 1.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 14 LVYPWIRCSYNPKCTYGD 31
LVYPWI C P C GD
Sbjct: 95 LVYPWIGCGECPVCLAGD 112
>gnl|CDD|112348 pfam03525, Meiotic_rec114, Meiotic recombination protein rec114.
Length = 328
Score = 28.1 bits (62), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 76 CSSVDSPPV----YYKTNCTVQNDVLCLGSRRFLKNVRCN 111
S ++ P + + NCT+Q VL + SR+ L V N
Sbjct: 15 SSMLEPPHIDKWQHLSGNCTLQFRVLLMDSRQVLILVVLN 54
>gnl|CDD|143558 cd07449, CRD_FZ3, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 3 (Fz3) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 3 (Fz3) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors
for multiple signal transduction pathways, including
both beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz3 plays a vital role in the
anterior-posterior guidance of commissural axons.
Knockout mice without Fz3 show defects in fiber tracts
in the rostral CNS.
Length = 127
Score = 27.3 bits (60), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 1 MEVTHPL-NMSCSELVYPWIRCSYNPKCT-YGDLT 33
ME HP+ N+ CS P++ Y P C YG +T
Sbjct: 39 MEPFHPMVNLECSRDFRPFLCALYAPVCMEYGRVT 73
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 27.8 bits (62), Expect = 4.0
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 18/73 (24%)
Query: 24 NPKCTYGDLTKVSCTVVDGVSCI---GEKTFDK------EYVCQYCYQTEPWQHTCVK-- 72
NP+ T + T V+ V+DG C+ GE K + + C++ E TC+
Sbjct: 324 NPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAE----TCIDYR 379
Query: 73 ---KASCSSVDSP 82
A +V +P
Sbjct: 380 VLYHAIHLAVPTP 392
>gnl|CDD|114062 pfam05315, ICEA, ICEA Protein. This family consists of several
ICEA proteins from Helicobacter pylori. Helicobacter
pylori infection causes gastritis and peptic ulcer
disease, and is classified as a definite carcinogen of
gastric cancer. ICEA1 is speculated to be associated
with peptic ulcer disease.
Length = 230
Score = 27.3 bits (60), Expect = 4.6
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 47 GEKTFDKEYVCQYCYQTEPWQH--TCVKK 73
G++ +D+E C CYQ +P ++ +C +
Sbjct: 179 GDEEYDEELGCVGCYQYDPIEYRKSCNDR 207
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 27.2 bits (60), Expect = 5.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 94 NDVLCLGSRRFLKNVRCNWTG 114
ND+L LG R K + +W+G
Sbjct: 50 NDLLSLGQHRIWKRMAVSWSG 70
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 26.7 bits (59), Expect = 8.8
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 100 GSRRFLKNVRCNWTGGYRWSTALILSITMGGFGADRFYLGHWQEG 144
G L+N +CN ++ L G F LGH Q+G
Sbjct: 610 GRGLVLRNEKCNENYTTVFTYELYSEEGKGVFDCRTNVLGHVQQG 654
>gnl|CDD|203608 pfam07298, NnrU, NnrU protein. This family consists of several
plant and bacterial NnrU proteins. NnrU is thought to be
involved in the reduction of nitric oxide. The exact
function of NnrU is unclear. It is thought however that
NnrU and perhaps NnrT are required for expression of
both nirK and nor.
Length = 184
Score = 25.9 bits (58), Expect = 9.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 151 FGGLGVWTIIDVILI 165
FGG W ++ +ILI
Sbjct: 125 FGGFLAWALVGIILI 139
>gnl|CDD|237818 PRK14792, PRK14792, lipoprotein signal peptidase; Provisional.
Length = 159
Score = 26.1 bits (58), Expect = 9.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 97 LCLGSRRFLKNVRCNWTGGYRWSTALILSITMGGFGADRFYLGH 140
+ L + K W + A +L T+G G DR+ LG+
Sbjct: 77 IGLIYWIWRKKPLPIWQL---LALAFLLGGTLGN-GIDRWRLGY 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.482
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,923,811
Number of extensions: 776814
Number of successful extensions: 838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 18
Length of query: 179
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 88
Effective length of database: 6,901,388
Effective search space: 607322144
Effective search space used: 607322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.2 bits)