RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2199
         (179 letters)



>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse,
           cytoplastic, hydrolase; 2.00A {Homo sapiens}
          Length = 223

 Score = 29.7 bits (66), Expect = 0.43
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 1   MEVTHPLNMSCSELVYPWIRCSYNPKCTYG 30
             + + L      L +    C Y  KCTYG
Sbjct: 175 PSLDNFLRKKPLTLEHRKQPCPYGRKCTYG 204


>1toc_R Ornithodorin; vitamin K, zymogen, gamma-carboxyglutamic acid, acute
           phase, liver, hydrolase, serine protease kunitz-like
           inhibitor, kringle; 3.10A {Ornithodoros moubata} SCOP:
           g.8.1.2 g.8.1.2
          Length = 120

 Score = 27.8 bits (61), Expect = 1.0
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 5   HPLNMSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCIGEKTFDKEYVCQ 58
           H   M  S L  P   C+     TY D    +C V+      GE TF+ E  CQ
Sbjct: 58  HSSEMHSSCLGDPPTSCAEGTDITYYDSDSKTCKVLAASCPSGENTFESEVECQ 111


>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
           complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
           FUC MAN; 4.00A {Mus musculus}
          Length = 488

 Score = 27.6 bits (60), Expect = 2.4
 Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 6/79 (7%)

Query: 24  NPKCTYGDLTKVSCTVVDGVSCIGEKTFDKEYVCQYCYQTEPWQHTCVKKASCSS----- 78
              C   DL ++ C+   G         + EY        +      ++  +  +     
Sbjct: 292 KLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGV 351

Query: 79  -VDSPPVYYKTNCTVQNDV 96
            +      +    T +N +
Sbjct: 352 QMHPGQEIHNFTLTGRNPL 370


>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex,
           cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
           bicolor} SCOP: c.69.1.5
          Length = 158

 Score = 26.9 bits (60), Expect = 2.8
 Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 2/45 (4%)

Query: 110 CNWTGGYRWSTALILSITMGGFGADRFYLGHWQEGIGKVFSFGGL 154
              +   R   AL L +    +          + G G    + GL
Sbjct: 80  VPVSSTRRSLAALELPVKT-SWYPWYMAPTEREVG-GWSVQYEGL 122


>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
           2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
           1wpx_A* 1ysc_A*
          Length = 421

 Score = 27.3 bits (61), Expect = 3.1
 Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 2/48 (4%)

Query: 109 RCNWTGGYRWSTALILSITMGGFGADRFYLGHWQEG--IGKVFSFGGL 154
            CNW G   W+  L                         G+V S+   
Sbjct: 340 ICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHF 387


>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
           immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
           musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
           3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
           3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
           3sdc_C* ...
          Length = 229

 Score = 27.0 bits (59), Expect = 3.1
 Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 2/68 (2%)

Query: 55  YVCQYCYQT--EPWQHTCVKKASCSSVDSPPVYYKTNCTVQNDVLCLGSRRFLKNVRCNW 112
           Y C    +        T +          P VY   +   Q+  LCL +    +      
Sbjct: 88  YFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKT 147

Query: 113 TGGYRWST 120
                + T
Sbjct: 148 MESGTFIT 155


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 3.9
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 15/76 (19%)

Query: 61  YQTEPWQHTCVKKASCSSVD----SPPVYYKTNCTVQNDVLCLGSRRFLKNVRCNWTGGY 116
            +TE  Q + + +      D       V+ K N +     L L  R+ L  +R       
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELR------- 148

Query: 117 RWSTALILSITMGGFG 132
                 +L   + G G
Sbjct: 149 --PAKNVLIDGVLGSG 162


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.140    0.482 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,922,432
Number of extensions: 165467
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 35
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.1 bits)