RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2199
         (179 letters)



>d1tocr2 g.8.1.2 (R:57-119) Ornithodorin {Soft tick (Ornithodoros
          moubata) [TaxId: 6938]}
          Length = 63

 Score = 28.9 bits (64), Expect = 0.076
 Identities = 18/54 (33%), Positives = 22/54 (40%)

Query: 5  HPLNMSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCIGEKTFDKEYVCQ 58
          H   M  S L  P   C+     TY D    +C V+      GE TF+ E  CQ
Sbjct: 1  HSSEMHSSCLGDPPTSCAEGTDITYYDSDSKTCKVLAASCPSGENTFESEVECQ 54


>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 273

 Score = 25.2 bits (55), Expect = 5.3
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 25/75 (33%)

Query: 52  DKEYVCQYC-----YQTEPWQHTCVKKASCSSVDSP--PVYYKTNCTV------------ 92
           D  Y+  +       + +  ++    +  C+    P   +Y     +             
Sbjct: 32  DFIYIDDFTLQYFGSKKQYERY----RKKCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWC 87

Query: 93  QNDVLCLGSRRFLKN 107
           +N  LCL S+ FL +
Sbjct: 88  RN--LCLLSKLFLDH 100


>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 505

 Score = 25.1 bits (52), Expect = 6.6
 Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 4/80 (5%)

Query: 4   THPLNMSCSELVYPWIRCSYNPKCTYGDLTKVSCTVVDGVSCIGEKTFDKEYVCQYCYQT 63
             P  +    +   +    +  +     L                   +K  +CQ C+  
Sbjct: 389 DIPEKVVIGSIAKEYQPSEFPHRKIVKTLIAGIG----EDKLAATFHIEKGTLCQGCHHN 444

Query: 64  EPWQHTCVKKASCSSVDSPP 83
            P   T  K ASC       
Sbjct: 445 SPASLTPPKCASCHGKPFDA 464


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 24.6 bits (53), Expect = 9.7
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 154 LGVWTIIDVILIAIRYLGP 172
           +G W  +  IL+ + Y   
Sbjct: 514 IGFWFAVAAILVVLAYGPT 532


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.482 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,194
Number of extensions: 36572
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 13
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.2 bits)