BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2200
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 106 GSKQTPPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWL 164
GS+ TP +D Q++ + + G + C IC + KD I CGHL C CL W
Sbjct: 1 GSEPTP--QDHIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQ 58
Query: 165 ETCPNRQTCPVCKAAIDKDKVIPV 188
E+ Q CP C+ I + I V
Sbjct: 59 ES--EGQGCPFCRCEIKGTEPIVV 80
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
P +D Q++ + + G + C IC + KD I CGHL C CL W E+
Sbjct: 311 PTPQDHIKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 368
Query: 170 RQTCPVCKAAIDKDKVIPV 188
Q CP C+ I + I V
Sbjct: 369 GQGCPFCRCEIKGTEPIVV 387
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
P +D Q++ + + G + C IC + KD I CGHL C CL W E+
Sbjct: 311 PTPQDHIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 368
Query: 170 RQTCPVCKAAIDKDKVIPV 188
Q CP C+ I + I V
Sbjct: 369 GQGCPFCRCEIKGTEPIVV 387
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
P +D Q++ + + G + C IC + KD I CGHL C CL W E+
Sbjct: 309 PTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 366
Query: 170 RQTCPVCKAAIDKDKVIPV 188
Q CP C+ I + I V
Sbjct: 367 GQGCPFCRCEIKGTEPIVV 385
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C IC + KD I CGHL C CL W E+ + Q CP C+ I + I V
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQES--DGQGCPFCRCEIKGTEPIIV 391
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
N +I +C ICL+ K+ V + C H+FC C+ + L CP+CK I K
Sbjct: 16 NAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
P +D Q++ + + G + C IC + KD I CGHL C CL W E+
Sbjct: 309 PTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 366
Query: 170 RQTCPVCKAAIDKDKVIPV 188
Q CP C+ I + I V
Sbjct: 367 GQGCPFCRCEIKGTEPIVV 385
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C IC + KD I CGHL C CL W E+ Q CP C+ I + I V
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV 77
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C IC + KD I CGHL C CL W E+ + Q CP C+ I + I V
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQES--DGQGCPFCRCEIKGTEPIIV 79
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 131 GQIYDCNICLD-------TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
G + C IC+D + V + CGH+FC CL L+ N TCP C+ I+
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHK 57
Query: 184 KVIPVY 189
+ P+Y
Sbjct: 58 RYHPIY 63
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
C++CL+ K+ VI CGH FC C+ +W E CPVC
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 124 TDGENDKGQIYDCNICLD-------TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
T G G + C IC+D + V + CGH+FC CL L+ N TCP C
Sbjct: 2 TTGLRPSGTV-SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTC 57
Query: 177 KAAIDKDKVIPVY 189
+ I+ + P+Y
Sbjct: 58 RKKINHKRYHPIY 70
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
C +CLD A V CGHL C C P Q CP+C+A +
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAEC-------APGLQLCPICRAPV 53
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
C ICLD + V CGH FC C+ Q ET CP+CK ++ K+ +
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 135 DCNICLD-------TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C IC+D + V + CGH+FC CL L+ N TCP C+ I+ + P
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRYHP 65
Query: 188 VYGRGGS 194
+Y G+
Sbjct: 66 IYIGSGT 72
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 135 DCNICLD-------TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C IC+D + V + CGH+FC CL L+ N TCP C+ I+ + P
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRYHP 130
Query: 188 VY 189
+Y
Sbjct: 131 IY 132
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181
C ICL+ + +++ C H FC+ C+ +W+ P TCP+CK ++
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP---TCPLCKVPVE 51
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 36.6 bits (83), Expect = 0.014, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
C ICLD + V CGH FC C+ Q ET CP+C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 36.2 bits (82), Expect = 0.017, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
G Y+C ICL ++AV + CGH FC C+ + + ++ CPV + ++++ P
Sbjct: 4 GSKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--CPVDNEILLENQLFP 58
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
Y+C ICL ++AV + CGH FC C+ + + ++ CPV + ++++ P
Sbjct: 26 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--CPVDNEILLENQLFP 77
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 93 VQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCG 152
+Q+K + T ++ ++E EN+ C IC + +AV C
Sbjct: 18 IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENE----LQCIICSEYFIEAVTLNCA 72
Query: 153 HLFCWPCLHQWLETCPNRQTCPVCKAAIDK-------DKVIPVYGRGGSSKTDPRDKVPP 205
H FC C+++W+ + CP+C+ I D I SS+ R V
Sbjct: 73 HSFCSYCINEWM---KRKIECPICRKDIKSKTYSLVLDNXINKMVNNLSSEVKERRIVLI 129
Query: 206 RPQGQR 211
R + +
Sbjct: 130 RERKAK 135
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 93 VQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCG 152
+Q+K + T ++ ++E EN+ C IC + +AV C
Sbjct: 29 IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENE----LQCIICSEYFIEAVTLNCA 83
Query: 153 HLFCWPCLHQWLETCPNRQTCPVCKAAI 180
H FC C+++W+ + CP+C+ I
Sbjct: 84 HSFCSYCINEWM---KRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 93 VQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCG 152
+Q+K + T ++ ++E EN+ C IC + +AV C
Sbjct: 18 IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENE----LQCIICSEYFIEAVTLNCA 72
Query: 153 HLFCWPCLHQWLETCPNRQTCPVCKAAI 180
H FC C+++W+ + CP+C+ I
Sbjct: 73 HSFCSYCINEWM---KRKIECPICRKDI 97
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 131 GQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
+++ C IC + +DA + C L C+ C+ +WL R CP C+A + +++
Sbjct: 20 AEVFRCFICXEKLRDARLCPHCSKLCCFSCIRRWLT--EQRAQCPHCRAPLQLRELV 74
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
Y+C ICL ++AV + CGH FC C+ + + ++ CPV + ++++ P
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--CPVDNEILLENQLFP 70
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
+C IC+D D ++ C H FC C+ +W + + CP+C+ +
Sbjct: 17 ECCICMDGRADLILP-CAHSFCQKCIDKWSD---RHRNCPICRLQM 58
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
Y+C ICL ++AV + CGH FC C+ + + ++ CPV + ++++ P
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--CPVDNEILLENQLFP 70
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 136 CNICLD-------TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181
C IC+D + V + CGH+FC CL L+ N TCP C+ I+
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKIN 67
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQT-----CPVCKA 178
C ICL+ K+ V + C H FC C+ E+ NR T CPVC+
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYES--NRNTDGKGNCPVCRV 67
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 132 QIYDCNICLDTAKDAVIS----MCGHLFCWPCLHQWLETCPNRQTCPVC 176
++ +C IC+++ + + CGH C CL + L + N CP C
Sbjct: 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 136 CNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAI 180
C +C+D V CGHL C C P+ + CP+C+ I
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQEC-------APSLRKCPICRGII 336
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 30.8 bits (68), Expect = 0.76, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 136 CNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
C +CL+ K + I C H F CL +WLE R+ CP+C +
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---RKVCPLCNMPV 62
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 30.4 bits (67), Expect = 0.85, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 135 DCNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
+C +CL +D + CGH F C+ WL + TCP+C+ +
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTV 53
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
DK + C++ L + K + CGH FC C+ L + + C C+ +I KDKV
Sbjct: 13 EDKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLSS--SSPKCTACQESIVKDKVF 66
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 133 IYDCNICLDTAKDAVISMCGHLFCWPCLH--QWLETCPNRQTCPVCKAAIDKD 183
+ +C ICL T V C H+FC+ C+ WL + C +C+ I +D
Sbjct: 15 VPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-----KRCALCRQEIPED 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 136 CNICL---DTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181
C ICL + +D C HLF C+ QWL T + CP+C+ I+
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVDIE 62
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184
C +C DA I C H FC C+ ++LET + CP+C + K +
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVHKTR 64
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCL---HQWLETCPNRQTCPVCKAAIDKDKVIP 187
C ICL+ + CGH FC CL H+ +CPVC+ + + + P
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184
C +C DA I C H FC C+ ++LET + CP+C + K +
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVHKTR 64
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184
C +C DA I C H FC C+ ++LET + CP+C + K +
Sbjct: 14 CVLCGGYFIDATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVHKTR 60
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 136 CNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAI 180
C +C+D V CGHL C C P+ + CP+C++ I
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCA-------PSLRKCPICRSTI 65
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 105 SGSKQTPPNRDE--GSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQ 162
+ + TPP E G K G + + Y C+ C + + + CGH +C CL
Sbjct: 2 AAASVTPPGSLELLQPGFSKTLLGTKLEAK-YLCSACRNVLRRPFQAQCGHRYCSFCLAS 60
Query: 163 WLETCPNRQTCPVC 176
L + P Q C C
Sbjct: 61 ILSSGP--QNCAAC 72
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 28.5 bits (62), Expect = 3.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNR-QTCPVCKAAID 181
C +C + ++ CGH C E+C + Q+CPVC++ ++
Sbjct: 21 CMVCCEEEINSTFCPCGHTVC-------CESCAAQLQSCPVCRSRVE 60
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 119 GDQKKTDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPV 175
G + E G +C +C + ++V + C HLF C+ WLE +CPV
Sbjct: 1 GSSGSSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE---QHDSCPV 57
Query: 176 CKAAI 180
C+ ++
Sbjct: 58 CRKSL 62
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 136 CNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCK 177
C IC D DA VI CG+ +C C+ L + TCP C
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALLE-SDEHTCPTCH 59
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 28.1 bits (61), Expect = 5.3, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCL----HQWLETCPNRQTCPVC 176
C ICL+ + + CGH C C+ + + + + +CPVC
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181
C IC++ + V C H C PC +E CP C+ +
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--ASLCCPFCRRRVS 61
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 136 CNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
C IC D DA VI CG+ +C C+ L + TCP C
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLE-SDEHTCPTC 56
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 126 GENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
G + + + C I L+ KD VI G + + +WL+ +TCP + + +
Sbjct: 1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGL 58
Query: 186 IPVY 189
P Y
Sbjct: 59 TPNY 62
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTC 173
+ C IC ++ V++ C H FC C + P C
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|1BG5|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of
Alpha-Na, K-Atpase As A Fusion Protein With Glutathione
S-Transferase
Length = 254
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 39 ICFDTAKDAVISMCGHLFWLKFFYWPGRG------GSEIDPRDEVPPRPQGQRTERENSS 92
+CF +A+ + +L K+ WP +G G + P+ ++ PR E ++S
Sbjct: 177 VCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKSDLVPRGSSYYQEAKSSK 236
Query: 93 VQSKVSNMA 101
+ NM
Sbjct: 237 IMESFKNMV 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,390,085
Number of Sequences: 62578
Number of extensions: 356543
Number of successful extensions: 646
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 91
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)