BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2200
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 86/119 (72%), Gaps = 2/119 (1%)
Query: 100 MATTSSGSKQTPPNRDEG--SGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCW 157
MA+ + + N + G SG T + ++CNICLDTAKDAVIS+CGHLFCW
Sbjct: 1 MASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
Query: 158 PCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
PCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 59/116 (50%), Gaps = 33/116 (28%)
Query: 2 ATTSSGSKQTPPNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF----- 56
A+T + + P G+G+ GG D + ++CNIC DTAKDAVIS+CGHLF
Sbjct: 10 ASTENSNAGGPSGSSNGTGE----SGGQDST--FECNICLDTAKDAVISLCGHLFCWPCL 63
Query: 57 --WL-------------------KFFYWPGRGGS-EIDPRDEVPPRPQGQRTEREN 90
WL K GRG + + DPR++ PPRPQGQR E EN
Sbjct: 64 HQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 79/100 (79%), Gaps = 6/100 (6%)
Query: 117 GSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
G+GD D ++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVC
Sbjct: 28 GAGDNTNQD------NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVC 81
Query: 177 KAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
KA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct: 82 KAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 121
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 50/100 (50%), Gaps = 33/100 (33%)
Query: 18 GSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL------------ 58
G+GD D ++CNIC DTAKDAVIS+CGHLF WL
Sbjct: 28 GAGDNTNQD------NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVC 81
Query: 59 -------KFFYWPGRGGS-EIDPRDEVPPRPQGQRTEREN 90
K GRG + + DPR++ PPRPQGQR E EN
Sbjct: 82 KAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 121
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 74/83 (89%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG
Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96
Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
+ + DPR+K PPRPQGQR EPEN
Sbjct: 97 TGQQDPREKTPPRPQGQRPEPEN 119
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 49/91 (53%), Gaps = 29/91 (31%)
Query: 27 GGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL-------------------KF 60
GG D + ++CNIC DTAKDAVIS+CGHLF WL K
Sbjct: 31 GGQDST--FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 61 FYWPGRGGS-EIDPRDEVPPRPQGQRTEREN 90
GRG + + DPR++ PPRPQGQR E EN
Sbjct: 89 IPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 74/83 (89%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG
Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96
Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
+ + DPR+K PPRPQGQR EPEN
Sbjct: 97 TGQQDPREKTPPRPQGQRPEPEN 119
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 49/91 (53%), Gaps = 29/91 (31%)
Query: 27 GGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL-------------------KF 60
GG D + ++CNIC DTAKDAVIS+CGHLF WL K
Sbjct: 31 GGQDST--FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 61 FYWPGRGGS-EIDPRDEVPPRPQGQRTEREN 90
GRG + + DPR++ PPRPQGQR E EN
Sbjct: 89 IPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 74/83 (89%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG
Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96
Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
+ + DPR+K PPRPQGQR EPEN
Sbjct: 97 TGQQDPREKTPPRPQGQRPEPEN 119
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 49/91 (53%), Gaps = 29/91 (31%)
Query: 27 GGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL-------------------KF 60
GG D + ++CNIC DTAKDAVIS+CGHLF WL K
Sbjct: 31 GGQDST--FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 61 FYWPGRGGS-EIDPRDEVPPRPQGQRTEREN 90
GRG + + DPR++ PPRPQGQR E EN
Sbjct: 89 IPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 74/83 (89%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
++CNICLDT+KDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG
Sbjct: 39 FECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 98
Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
+ + DPR+K PPRPQGQR EPEN
Sbjct: 99 TGQQDPREKTPPRPQGQRPEPEN 121
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 45/83 (54%), Gaps = 27/83 (32%)
Query: 35 YDCNICFDTAKDAVISMCGHLF-------WL-------------------KFFYWPGRGG 68
++CNIC DT+KDAVIS+CGHLF WL K GRG
Sbjct: 39 FECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 98
Query: 69 S-EIDPRDEVPPRPQGQRTEREN 90
+ + DPR++ PPRPQGQR E EN
Sbjct: 99 TGQQDPREKTPPRPQGQRPEPEN 121
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 120 DQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAA 179
++ + D+ ++CNICLD AKDAV+S+CGHLFCWPCL QWL+T PN Q CPVCK+A
Sbjct: 10 EEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSA 69
Query: 180 IDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEP 214
ID +KV+P+YGRGG S +DPR KVPPRP+GQR+EP
Sbjct: 70 IDGNKVVPIYGRGGDS-SDPRKKVPPRPKGQRSEP 103
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 26/93 (27%)
Query: 21 DQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL--------------- 58
++ + D+S ++CNIC D AKDAV+S+CGHLF WL
Sbjct: 10 EEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSA 69
Query: 59 ----KFFYWPGRGGSEIDPRDEVPPRPQGQRTE 87
K GRGG DPR +VPPRP+GQR+E
Sbjct: 70 IDGNKVVPIYGRGGDSSDPRKKVPPRPKGQRSE 102
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 115 DEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCP 174
+E G + G ++CNICL+TA++AV+S+CGHL+CWPCLHQWLET P RQ CP
Sbjct: 6 EEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65
Query: 175 VCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETV--FHF 229
VCKA I ++KV+P+YGRG DPR K PPRPQGQR PE+ FHF
Sbjct: 66 VCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHF 122
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 38/105 (36%)
Query: 13 PNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL------- 58
PNR+ G ++CNIC +TA++AV+S+CGHL+ WL
Sbjct: 14 PNRERGG-----------AGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQ 62
Query: 59 ------------KFFYWPGRGGSEI-DPRDEVPPRPQGQRTEREN 90
K GRG + DPR + PPRPQGQR E+
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPES 107
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 78/120 (65%), Gaps = 13/120 (10%)
Query: 112 PNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ 171
PNR+ G ++CNICL+TA++AV+S+CGHL+CWPCLHQWLET P+RQ
Sbjct: 14 PNRERGGASA-----------TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62
Query: 172 TCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETV--FHF 229
CPVCKA I ++KV+P+YGRG DPR K PPRPQGQR PE+ FHF
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDAGGFHF 122
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 38/105 (36%)
Query: 13 PNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL------- 58
PNR+ G S ++CNIC +TA++AV+S+CGHL+ WL
Sbjct: 14 PNRERGG-----------ASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62
Query: 59 ------------KFFYWPGRGGSEI-DPRDEVPPRPQGQRTEREN 90
K GRG + DPR + PPRPQGQR E+
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPES 107
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 78/120 (65%), Gaps = 13/120 (10%)
Query: 112 PNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ 171
PNR+ G ++CNICL+TA++AV+S+CGHL+CWPCLHQWLET P+RQ
Sbjct: 14 PNRERGGASA-----------TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62
Query: 172 TCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETV--FHF 229
CPVCKA I ++KV+P+YGRG DPR K PPRPQGQR PE+ FHF
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDAGGFHF 122
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 38/105 (36%)
Query: 13 PNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WL------- 58
PNR+ G S ++CNIC +TA++AV+S+CGHL+ WL
Sbjct: 14 PNRERGG-----------ASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62
Query: 59 ------------KFFYWPGRGGSEI-DPRDEVPPRPQGQRTEREN 90
K GRG + DPR + PPRPQGQR E+
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPES 107
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 7/79 (8%)
Query: 124 TDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETC-------PNRQTCPVC 176
T G+ ++ +DCNICLDTA D V+++CGHLFCWPC+++WL ++ CPVC
Sbjct: 32 TAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVC 91
Query: 177 KAAIDKDKVIPVYGRGGSS 195
K+ I ++P+YGRG SS
Sbjct: 92 KSNITITSLVPLYGRGMSS 110
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 25 TDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYW 63
T G ++S +DCNIC DTA D V+++CGHLF W + W
Sbjct: 32 TAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKW 71
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 11/95 (11%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLET--------CPNRQTCPVCKAAIDKDKV 185
+DCNICLD+ ++ V+++CGHLFCWPC+H+WL+ + CPVCK+ + +
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105
Query: 186 IPVYGRGG-SSKTDPRDKVPPRPQG--QRTEPENS 217
+P+YGRG +++ + ++ VP RP G R E NS
Sbjct: 106 VPLYGRGRCTTQEEGKNSVPKRPVGPVYRLEMPNS 140
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 35 YDCNICFDTAKDAVISMCGHLF 56
+DCNIC D+ ++ V+++CGHLF
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLF 67
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 14/94 (14%)
Query: 129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ-------------TCPV 175
D G +DCNICLD +D V+++CGHLFCWPC+H+W N + CPV
Sbjct: 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73
Query: 176 CKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQG 209
CK+ + + ++P+YGRG + + VP RP G
Sbjct: 74 CKSDVSEATLVPIYGRGQKAPQSGSN-VPSRPTG 106
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 21 DQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
D D G D +DCNIC D +D V+++CGHLF
Sbjct: 9 DTTLVDSGGD----FDCNICLDQVRDPVVTLCGHLF 40
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWL-------ETCPNRQ-TCPVCKAAIDKDKV 185
+DCNICLD + VI++CGHL+CWPC+++W+ E +Q CPVCKA + + +
Sbjct: 39 FDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTL 98
Query: 186 IPVYGRGGSSKTDPRDKVP 204
IP+YGRGG S K P
Sbjct: 99 IPLYGRGGQSTKPSEGKAP 117
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 35 YDCNICFDTAKDAVISMCGHLF-WLKFFYW 63
+DCNIC D + VI++CGHL+ W + W
Sbjct: 39 FDCNICLDCVHEPVITLCGHLYCWPCIYKW 68
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 60.1 bits (144), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 84 QRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTA 143
Q E+ENS++Q+K+SN SK N + S D + N+ + C++C++
Sbjct: 1001 QDLEKENSTLQNKLSN---EIKNSKMLSKNLSKNSDDHLLIEENNELRRRLICSVCMENF 1057
Query: 144 KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
++ +I CGH++C C+ L+T NR+ CP CK DK + ++
Sbjct: 1058 RNYIIIKCGHIYCNNCIFNNLKT-RNRK-CPQCKVPFDKKDLQKIF 1101
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG 190
C +CL+ ++CGHLFCW C+ +W C N++ CPVC+ I +P+Y
Sbjct: 322 CTLCLEVRTHTTATICGHLFCWHCITEW---CNNKEQCPVCRCPISIRTCVPLYN 373
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana
GN=HUB1 PE=1 SV=1
Length = 878
Score = 55.1 bits (131), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 84 QRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTA 143
+R E E + KVS + + GS R E S + +I C C D
Sbjct: 784 RRIEEEMEIAKKKVSRLRSLIEGSSAIQKLRQELS----------EFKEILKCKACNDRP 833
Query: 144 KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
K+ VI+ C HLFC PC+ + T ++ CP C A+ + + P+Y
Sbjct: 834 KEVVITKCYHLFCNPCVQKLTGT--RQKKCPTCSASFGPNDIKPIY 877
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 125 DGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184
D ND QI C+ICL + I CGH FC C+ WL CP+CK
Sbjct: 1229 DTLNDN-QILSCSICLGEVEIGAIIKCGHYFCKSCILTWLRA---HSKCPICKGFC---S 1281
Query: 185 VIPVYGRGGSSKTDPRDK--VPPRPQGQRTEPENSS 218
+ VY + T+ R+K PR +G + +NS+
Sbjct: 1282 ISEVYNFKFKNSTEKREKEIQEPRREGADSSQDNSN 1317
Score = 35.0 bits (79), Expect = 0.50, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 26 DGGNDKSQIYDCNICFDTAKDAVISMCGHLF-------WLK----------------FFY 62
D ND +QI C+IC + I CGH F WL+ +
Sbjct: 1229 DTLND-NQILSCSICLGEVEIGAIIKCGHYFCKSCILTWLRAHSKCPICKGFCSISEVYN 1287
Query: 63 WPGRGGSEIDPRDEVPPRPQGQRTERENSSVQSKVSNMA 101
+ + +E ++ PR +G + ++NS+ S +SNM+
Sbjct: 1288 FKFKNSTEKREKEIQEPRREGADSSQDNSNENSIISNMS 1326
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195
C+ICLD +D V CGH+FC C NR CP+CK K+ + PV+
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 196 KTDPRDKVP--PRPQGQRTEPENSSSCYLLETVFHFCVQFCT-SGVAICAI 243
+ R KV +P EP++ C + H+ +C G +C +
Sbjct: 76 ENIERLKVDNGKQPGELAREPQDMKLCERHQEKLHY---YCEDDGKLLCVM 123
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195
C+ICLD +D V CGH+FC C NR CP+CK K+ + PV+
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 196 KTDPRDKVP--PRPQGQRTEPENSSSCYLLETVFHF 229
+ R KV +P EP++ C + H+
Sbjct: 76 ENIERLKVDNGRQPGELAREPQDMKLCERHQEKLHY 111
>sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=slx8 PE=1 SV=1
Length = 269
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
Y C ICLD+ ++ + CGH+FC C+ L T Q CPVC+ + +KVI + G
Sbjct: 204 YKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICLEMMLG 263
Query: 194 SSK 196
S K
Sbjct: 264 SQK 266
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 91 SSVQSKVSNMATTSSGSKQT------PPNRDEGS--------GDQKKTDGENDKGQIYDC 136
S++ S S++ S GS QT P +EG+ G+ +D + + + C
Sbjct: 269 SNLSSITSSIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNWSTSDSTSTEA-VGKC 327
Query: 137 NICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
+CL T + + CGH+FCW C+ +W C +Q CP+C+ ++ +Y
Sbjct: 328 TLCLSTRQHPTATPCGHVFCWSCIMEW---CNEKQECPLCRTPNTHSSLVCLY 377
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C +CL KD CGH+FCW C+ W++ RQ CP+C+A + + +++P+
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWVK---ERQECPLCRAKMRESQLLPL 294
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 51.2 bits (121), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
C IC D K I+ CGHL+C CL WL+ + +CP+CK ++K+
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLK---HSSSCPMCKTKLNKN 1136
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 50.8 bits (120), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG 190
G+ +DC IC+ + +I+ C H+FC C+ Q L+ ++ CP+C
Sbjct: 630 GEDFDCPICISPPTNIIITRCAHIFCRACILQTLQR--SKPLCPLC-------------- 673
Query: 191 RGGSSKTDPRDKVPPRPQGQRTEPENS 217
RG +++D + PP P T+ E++
Sbjct: 674 RGSLTQSDLYNAPPPPPDSSNTDGEDA 700
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 92 SVQSKVSNMATTSSGSKQTPPNRDE-----GSGDQKKTDGENDKGQIYDCNICLDTAKDA 146
S+ V +M G +Q R E G ++ + E + C +CL+ +
Sbjct: 224 SLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHP 283
Query: 147 VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
+ CGHLFCW C+ W C ++ CP+C+ K+I
Sbjct: 284 TATPCGHLFCWECITAW---CSSKAECPLCREKFPPQKLI 320
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK-DKVIP 187
DK + C IC D ++A ++ CGH FC+ C+HQ LE + CP C +D D + P
Sbjct: 129 DKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLE---DNNRCPKCNYVVDNIDHLYP 185
Query: 188 VY 189
+
Sbjct: 186 NF 187
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 30 DKSQIYDCNICFDTAKDAVISMCGHLFWLK 59
DKS + C ICFD ++A ++ CGH F K
Sbjct: 129 DKSNDFVCPICFDMIEEAYMTKCGHSFCYK 158
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK-DKVIP 187
DK + C IC D ++A ++ CGH FC+ C+HQ LE + CP C +D D + P
Sbjct: 131 DKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLE---DNNRCPKCNYVVDNIDHLYP 187
Query: 188 VY 189
+
Sbjct: 188 NF 189
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 30 DKSQIYDCNICFDTAKDAVISMCGHLFWLK 59
DKS + C ICFD ++A ++ CGH F K
Sbjct: 131 DKSNDFVCPICFDMIEEAYMTKCGHSFCYK 160
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 136 CNIC---LDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
C IC D ++D CGH F CL QW ET P+R TCP C+ + K +I
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSR-TCPQCRIQVGKKTII 59
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 136 CNIC---LDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
C IC D ++D CGH F CL QW ET P+R TCP C+ + K +I
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSR-TCPQCRIQVGKRTII 59
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
japonica GN=BRE1B PE=2 SV=1
Length = 844
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 121 QKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
QK D + I C +C D K+ VI+ C HLFC PC+ + LE + CP C
Sbjct: 777 QKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEI--RHRKCPGCGTPF 834
Query: 181 DKDKV 185
+ V
Sbjct: 835 GQSDV 839
Score = 34.7 bits (78), Expect = 0.58, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 22 QKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
QK D + I C +CFD K+ VI+ C HLF
Sbjct: 777 QKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLF 811
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
indica GN=BRE1B PE=3 SV=2
Length = 844
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 121 QKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
QK D + I C +C D K+ VI+ C HLFC PC+ + LE + CP C
Sbjct: 777 QKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEI--RHRKCPGCGTPF 834
Query: 181 DKDKV 185
+ V
Sbjct: 835 GQSDV 839
Score = 34.7 bits (78), Expect = 0.58, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 22 QKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
QK D + I C +CFD K+ VI+ C HLF
Sbjct: 777 QKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLF 811
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C +CL+ + + + CGHLFCW C+ +W C + CP+C+ K++ +
Sbjct: 271 CTLCLEERRHSTATPCGHLFCWECITEW---CNTKTECPLCREKFPPQKLVYL 320
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195
C+ICLD +D V CGH+FC C +R CP+CK K+ + PV+
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 196 KTDPRDKV 203
+ R KV
Sbjct: 76 ENIERLKV 83
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 92 SVQSKVSNMATTSSGSKQTPPNRDE-----GSGDQKKTDGENDKGQIYDCNICLDTAKDA 146
S+ V ++ G +Q R E G ++ + E + C +CL+ +
Sbjct: 224 SLLHLVLSVGLRLYGFRQRQRARKEWRLHRGLSHRRGSLEERAVSRNPLCTLCLEERRHP 283
Query: 147 VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
+ CGHLFCW C+ W C ++ CP+C+ K+I
Sbjct: 284 TATPCGHLFCWECITAW---CSSKAECPLCREKFPPQKLI 320
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195
C+ICLD +D V CGH+FC C +R CP+CK K+ + PV+
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 196 KTDPRDKV 203
+ R KV
Sbjct: 76 ENIERLKV 83
>sp|O74563|BRL2_SCHPO E3 ubiquitin-protein ligase brl2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl2 PE=1 SV=1
Length = 680
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 136 CNIC-LDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
C++C + KD +IS+CGH FC+ C+ + +ET R CP+C VIP++
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRR--CPICGRGFGASDVIPIH 679
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 104 SSGSKQTPPNRDEGSGDQKKTDGENDK-----GQIYDCNICLDTAKDAVISMCGHLFCWP 158
++G + P+R + + +K E K G +C ICLD+ VI+ C H+FC P
Sbjct: 717 TNGMSSSGPSRSDTPEELRKMLIEKMKIILSSGSDEECAICLDSLTFPVITHCAHVFCKP 776
Query: 159 CLHQWLETCPNRQTCPVCKAAIDKDKVI 186
C+ Q + + CP+C+ I D ++
Sbjct: 777 CICQVIHSEQPHAKCPLCRNEIHGDNLL 804
>sp|Q32NQ8|RNF10_XENLA RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1
Length = 756
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNR-QTCPVCKAAIDKDKVIPVYG 190
++ C ICL A I+ CGH+FCWPC+ +L CP+C ++I K + V
Sbjct: 202 EVASCPICLYPPVAAKITRCGHIFCWPCILHYLSLSEKDWSRCPICYSSIIKKDLKSVVA 261
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
+C ICLD+ VI+ C H+FC PC+ Q ++ CP+C+ I +D ++
Sbjct: 759 ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLL 810
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3
SV=2
Length = 545
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195
C+ICLD +D V CGH+FC C R CP+CK K+ + PV+
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPFTKENIRPVWQLASLV 75
Query: 196 KTDPRDKV 203
+ R KV
Sbjct: 76 ENIERLKV 83
>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
indica GN=BRE1A PE=3 SV=2
Length = 884
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ-TCPVCKAAIDKDKVIPVY 189
I C IC D K+ VI+ C HLFC C+ + L NRQ CP C + + V P+Y
Sbjct: 829 ILKCGICHDRQKEVVITKCYHLFCNQCIQKSLG---NRQRRCPSCSLSFGANDVKPIY 883
>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
japonica GN=BRE1A PE=2 SV=3
Length = 884
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ-TCPVCKAAIDKDKVIPVY 189
I C IC D K+ VI+ C HLFC C+ + L NRQ CP C + + V P+Y
Sbjct: 829 ILKCGICHDRQKEVVITKCYHLFCNQCIQKSLG---NRQRRCPSCSLSFGANDVKPIY 883
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 106 GSKQTPPNRDEGSGD-QKKTDGENDKGQIY--------DCNICLDTAKDAVISMCGHLFC 156
G P + G + Q++ ++ Q+Y C IC ++ KD I CGHL C
Sbjct: 312 GKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLC 371
Query: 157 WPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTD 198
CL W + + QTCP C+ I + + +Y G + +
Sbjct: 372 SCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIYQFHGQATAE 411
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 132 QIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
++ C ICLD A ++ C H FC C+ +WLE R TCP+CKA +
Sbjct: 9 ELGSCCICLDAITGAARALPCLHAFCLACIRRWLE---GRPTCPLCKAPV 55
>sp|Q4I7N9|BRE1_GIBZE E3 ubiquitin-protein ligase BRE1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRE1 PE=3
SV=1
Length = 703
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNR-QTCPVCKAAIDKDKVIPVY 189
C IC + K+ + CGHLFC C+ + NR + CP C A DK V+PV+
Sbjct: 651 CTICRNNFKNTALKTCGHLFCNQCVD---DRISNRMRKCPTCSRAFDKMDVMPVH 702
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 132 QIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
++ C ICLD A ++ C H FC C+ +WLE R TCP+CKA +
Sbjct: 9 ELGSCCICLDAITGAARALPCLHAFCLACIRRWLE---GRPTCPLCKAPV 55
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194
+C IC D V+S CGH FC PCL Q L P CP C+ + V+ + + S
Sbjct: 168 ECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQ---CPTCRFGLPSPVVLE-HAKSHS 223
Query: 195 SKTDPRDKVP 204
T RD P
Sbjct: 224 ITTFLRDFYP 233
>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus GN=Rnf114 PE=2 SV=1
Length = 229
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 112 PNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ 171
P +G+ K E D + C +CL+ + V CGH+FC CL + L+ P +
Sbjct: 6 PESRDGAAQSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLK--PKKP 63
Query: 172 TCPVCKAAI 180
C VC++A+
Sbjct: 64 VCGVCRSAL 72
>sp|Q9ET26|RN114_MOUSE RING finger protein 114 OS=Mus musculus GN=Rnf114 PE=2 SV=2
Length = 229
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 112 PNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ 171
P +G+ K E D + C +CL+ + V CGH+FC CL + L+ P +
Sbjct: 6 PESRDGAAQSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLK--PKKP 63
Query: 172 TCPVCKAAI 180
C VC++A+
Sbjct: 64 VCGVCRSAL 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,585,137
Number of Sequences: 539616
Number of extensions: 4558115
Number of successful extensions: 14610
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 571
Number of HSP's that attempted gapping in prelim test: 13555
Number of HSP's gapped (non-prelim): 1542
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)