Query psy2200
Match_columns 248
No_of_seqs 356 out of 2415
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 18:48:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap4_A E3 ubiquitin ligase RNF 99.8 2E-21 6.7E-26 148.9 2.5 114 32-190 5-133 (133)
2 2djb_A Polycomb group ring fin 99.6 1.8E-15 6.1E-20 103.8 6.6 61 126-189 8-69 (72)
3 2ecw_A Tripartite motif-contai 99.6 6.7E-15 2.3E-19 103.7 8.2 68 128-195 14-84 (85)
4 2ecv_A Tripartite motif-contai 99.5 7.7E-15 2.6E-19 103.4 6.8 67 128-194 14-83 (85)
5 1t1h_A Gspef-atpub14, armadill 99.5 4.1E-15 1.4E-19 103.5 4.8 63 130-194 5-67 (78)
6 2ecy_A TNF receptor-associated 99.5 6.3E-15 2.2E-19 99.3 5.5 58 126-185 8-65 (66)
7 2yur_A Retinoblastoma-binding 99.5 7.8E-15 2.7E-19 101.2 5.7 56 126-182 8-64 (74)
8 2ysl_A Tripartite motif-contai 99.5 9.9E-15 3.4E-19 100.1 6.2 59 127-185 14-72 (73)
9 2egp_A Tripartite motif-contai 99.5 1.8E-15 6E-20 105.5 2.1 66 129-194 8-77 (79)
10 3ztg_A E3 ubiquitin-protein li 99.5 1.2E-14 4.2E-19 104.3 5.9 66 128-194 8-75 (92)
11 3ng2_A RNF4, snurf, ring finge 99.5 4.4E-15 1.5E-19 101.3 3.3 56 131-189 8-70 (71)
12 2csy_A Zinc finger protein 183 99.5 2.2E-14 7.5E-19 100.6 6.4 50 129-181 11-60 (81)
13 2kr4_A Ubiquitin conjugation f 99.5 1.1E-14 3.9E-19 103.1 4.5 64 128-194 9-72 (85)
14 1wgm_A Ubiquitin conjugation f 99.5 2.4E-14 8.2E-19 104.1 5.8 66 128-196 17-83 (98)
15 2xeu_A Ring finger protein 4; 99.5 9.6E-15 3.3E-19 97.5 3.3 54 133-189 3-63 (64)
16 2d8t_A Dactylidin, ring finger 99.5 5.6E-15 1.9E-19 101.0 2.0 52 131-185 13-64 (71)
17 2ct2_A Tripartite motif protei 99.5 6.6E-14 2.3E-18 99.4 7.6 58 128-185 10-71 (88)
18 2ea6_A Ring finger protein 4; 99.5 3E-14 1E-18 96.4 4.3 50 130-182 12-68 (69)
19 2kre_A Ubiquitin conjugation f 99.5 2.6E-14 8.9E-19 104.3 3.9 65 128-195 24-88 (100)
20 2ysj_A Tripartite motif-contai 99.5 1.1E-13 3.8E-18 92.2 6.6 50 127-176 14-63 (63)
21 2ect_A Ring finger protein 126 99.4 5.9E-14 2E-18 97.5 4.7 55 130-187 12-69 (78)
22 2ecn_A Ring finger protein 141 99.4 3.6E-14 1.2E-18 96.6 3.1 54 128-185 10-63 (70)
23 3lrq_A E3 ubiquitin-protein li 99.4 4.1E-14 1.4E-18 103.3 3.2 63 129-193 18-81 (100)
24 1g25_A CDK-activating kinase a 99.4 1.4E-13 4.8E-18 92.3 4.5 56 133-190 3-63 (65)
25 2ecj_A Tripartite motif-contai 99.4 2E-13 6.9E-18 89.2 4.8 49 128-176 10-58 (58)
26 1jm7_A BRCA1, breast cancer ty 99.4 1.7E-13 5.7E-18 101.8 4.0 62 132-193 20-81 (112)
27 2y43_A E3 ubiquitin-protein li 99.4 1.3E-13 4.6E-18 100.2 2.8 62 130-194 19-81 (99)
28 2kiz_A E3 ubiquitin-protein li 99.4 6E-13 2E-17 90.2 5.7 49 131-182 12-63 (69)
29 3fl2_A E3 ubiquitin-protein li 99.4 2.4E-13 8.1E-18 103.0 3.5 62 130-193 49-111 (124)
30 2ep4_A Ring finger protein 24; 99.4 6.2E-13 2.1E-17 91.4 5.0 50 130-182 12-64 (74)
31 4ayc_A E3 ubiquitin-protein li 99.4 2.3E-13 8E-18 105.0 3.0 48 132-182 52-99 (138)
32 2yu4_A E3 SUMO-protein ligase 99.3 4E-13 1.4E-17 96.9 3.4 66 131-196 5-77 (94)
33 2ecm_A Ring finger and CHY zin 99.3 6.1E-13 2.1E-17 86.0 3.8 46 133-181 5-54 (55)
34 1x4j_A Ring finger protein 38; 99.3 7.2E-13 2.5E-17 91.4 4.1 49 131-182 21-72 (75)
35 2ckl_A Polycomb group ring fin 99.3 3.7E-13 1.3E-17 99.5 2.8 51 130-183 12-63 (108)
36 1iym_A EL5; ring-H2 finger, ub 99.3 6.9E-13 2.3E-17 85.8 3.3 47 132-181 4-54 (55)
37 4ap4_A E3 ubiquitin ligase RNF 99.3 7.1E-13 2.4E-17 100.9 3.9 58 132-192 6-70 (133)
38 2l0b_A E3 ubiquitin-protein li 99.3 1.2E-12 4.1E-17 93.8 4.4 49 131-182 38-89 (91)
39 3hct_A TNF receptor-associated 99.3 1.2E-12 4.2E-17 98.2 4.7 65 126-192 11-75 (118)
40 1z6u_A NP95-like ring finger p 99.3 2.5E-13 8.5E-18 106.3 0.9 62 131-194 76-138 (150)
41 1chc_A Equine herpes virus-1 r 99.3 2.2E-12 7.5E-17 87.1 5.2 46 133-181 5-51 (68)
42 3l11_A E3 ubiquitin-protein li 99.3 5.3E-13 1.8E-17 99.7 0.6 51 130-182 12-62 (115)
43 1rmd_A RAG1; V(D)J recombinati 99.3 2.3E-12 7.8E-17 96.4 3.4 54 131-186 21-74 (116)
44 3knv_A TNF receptor-associated 99.3 1.7E-12 5.8E-17 100.5 2.7 53 128-182 26-78 (141)
45 2c2l_A CHIP, carboxy terminus 99.2 2.9E-12 1E-16 109.4 3.8 64 130-195 205-268 (281)
46 2f42_A STIP1 homology and U-bo 99.2 3.2E-12 1.1E-16 102.3 3.7 64 130-195 103-166 (179)
47 2ckl_B Ubiquitin ligase protei 99.2 1.6E-12 5.4E-17 103.3 1.9 61 130-192 51-113 (165)
48 1jm7_B BARD1, BRCA1-associated 99.2 7.9E-13 2.7E-17 99.1 -0.1 59 131-194 20-79 (117)
49 1v87_A Deltex protein 2; ring- 99.2 8.2E-12 2.8E-16 92.9 4.4 50 134-183 26-95 (114)
50 2ecl_A Ring-box protein 2; RNF 99.2 8.6E-12 3E-16 87.3 4.2 48 133-183 15-77 (81)
51 1e4u_A Transcriptional repress 99.2 1.4E-11 4.9E-16 85.5 4.3 54 130-185 8-65 (78)
52 1bor_A Transcription factor PM 99.2 3.1E-12 1E-16 83.2 0.8 46 131-182 4-49 (56)
53 2vje_A E3 ubiquitin-protein li 99.2 9.4E-12 3.2E-16 83.2 2.8 52 133-189 8-62 (64)
54 2vje_B MDM4 protein; proto-onc 99.2 1.1E-11 3.7E-16 82.6 2.7 52 133-189 7-61 (63)
55 3hcs_A TNF receptor-associated 99.1 1.8E-11 6E-16 97.6 3.9 65 126-192 11-75 (170)
56 2ea5_A Cell growth regulator w 99.1 7.5E-11 2.6E-15 79.7 5.8 50 131-189 13-63 (68)
57 2ecg_A Baculoviral IAP repeat- 99.1 5.6E-12 1.9E-16 86.9 -0.2 46 130-182 22-68 (75)
58 4ic3_A E3 ubiquitin-protein li 99.1 1.6E-11 5.6E-16 84.4 2.0 46 130-182 21-67 (74)
59 2bay_A PRE-mRNA splicing facto 99.1 2.6E-11 8.8E-16 80.2 2.7 55 133-190 3-58 (61)
60 3htk_C E3 SUMO-protein ligase 99.1 3.3E-11 1.1E-15 101.2 3.2 65 129-194 177-244 (267)
61 3dpl_R Ring-box protein 1; ubi 99.0 9.9E-11 3.4E-15 86.0 4.0 45 134-181 38-100 (106)
62 2y1n_A E3 ubiquitin-protein li 99.0 1E-10 3.6E-15 103.8 3.7 52 132-185 331-382 (389)
63 2d8s_A Cellular modulator of i 99.0 8E-10 2.7E-14 77.0 5.8 50 133-183 15-71 (80)
64 2yho_A E3 ubiquitin-protein li 98.9 6.2E-10 2.1E-14 77.4 2.4 51 131-190 16-67 (79)
65 4a0k_B E3 ubiquitin-protein li 98.8 3.7E-10 1.3E-14 84.2 0.2 45 134-181 49-111 (117)
66 2yur_A Retinoblastoma-binding 98.8 2.5E-09 8.6E-14 73.2 2.8 52 26-77 7-60 (74)
67 2ct0_A Non-SMC element 1 homol 98.7 1.8E-08 6.3E-13 68.8 5.7 49 132-181 14-63 (74)
68 2ysj_A Tripartite motif-contai 98.7 9.5E-09 3.3E-13 67.9 3.6 38 28-65 14-52 (63)
69 2ecj_A Tripartite motif-contai 98.7 8.4E-09 2.9E-13 66.8 3.2 39 27-65 8-47 (58)
70 2d8t_A Dactylidin, ring finger 98.7 1.7E-08 5.8E-13 68.4 4.1 42 31-74 12-54 (71)
71 3t6p_A Baculoviral IAP repeat- 98.7 4.1E-09 1.4E-13 92.8 1.1 45 130-181 292-337 (345)
72 2ysl_A Tripartite motif-contai 98.6 4.5E-08 1.5E-12 66.4 6.0 50 28-77 14-65 (73)
73 1wim_A KIAA0161 protein; ring 98.6 4E-09 1.4E-13 75.6 0.4 54 132-185 4-69 (94)
74 2ecy_A TNF receptor-associated 98.6 1.8E-08 6.2E-13 67.2 3.4 48 27-75 8-56 (66)
75 3ztg_A E3 ubiquitin-protein li 98.6 8.9E-09 3E-13 73.3 1.9 52 27-78 6-59 (92)
76 1wgm_A Ubiquitin conjugation f 98.6 4.7E-08 1.6E-12 70.7 4.8 47 30-78 18-66 (98)
77 2ecw_A Tripartite motif-contai 98.6 4E-08 1.4E-12 68.4 4.1 50 28-77 13-67 (85)
78 2csy_A Zinc finger protein 183 98.6 2E-08 6.9E-13 69.8 2.3 47 28-76 9-56 (81)
79 2egp_A Tripartite motif-contai 98.6 4.5E-08 1.5E-12 67.4 3.8 49 28-76 6-60 (79)
80 2ecv_A Tripartite motif-contai 98.5 8.7E-08 3E-12 66.7 5.0 49 28-76 13-66 (85)
81 1t1h_A Gspef-atpub14, armadill 98.5 3.3E-08 1.1E-12 68.1 2.7 48 29-77 3-51 (78)
82 2djb_A Polycomb group ring fin 98.5 5.6E-08 1.9E-12 66.0 3.8 48 26-75 7-56 (72)
83 2kre_A Ubiquitin conjugation f 98.4 9E-08 3.1E-12 69.4 3.1 49 28-78 23-72 (100)
84 2kr4_A Ubiquitin conjugation f 98.4 6.4E-08 2.2E-12 68.0 1.9 46 30-77 10-56 (85)
85 2ea6_A Ring finger protein 4; 98.4 6.3E-08 2.2E-12 64.8 1.6 45 29-75 10-62 (69)
86 2yu4_A E3 SUMO-protein ligase 98.4 1.1E-07 3.7E-12 68.1 2.9 44 32-75 5-54 (94)
87 2ect_A Ring finger protein 126 98.4 4.5E-07 1.5E-11 62.3 5.8 46 28-75 9-58 (78)
88 2ct2_A Tripartite motif protei 98.4 2.1E-07 7.3E-12 65.3 3.8 51 27-77 8-64 (88)
89 1vyx_A ORF K3, K3RING; zinc-bi 98.3 3.6E-07 1.2E-11 59.8 3.9 50 132-182 5-59 (60)
90 3knv_A TNF receptor-associated 98.3 8.6E-08 2.9E-12 73.9 0.6 38 29-66 26-64 (141)
91 3l11_A E3 ubiquitin-protein li 98.3 2.1E-07 7.1E-12 69.0 2.6 46 31-77 12-58 (115)
92 2ecn_A Ring finger protein 141 98.3 5.5E-07 1.9E-11 60.5 3.5 37 28-65 9-46 (70)
93 3lrq_A E3 ubiquitin-protein li 98.3 8.4E-08 2.9E-12 69.5 -0.8 46 31-77 19-66 (100)
94 4ayc_A E3 ubiquitin-protein li 98.2 2.3E-07 7.8E-12 71.1 1.3 42 33-76 52-94 (138)
95 2c2l_A CHIP, carboxy terminus 98.2 4.3E-07 1.5E-11 77.1 2.5 49 30-79 204-253 (281)
96 1bor_A Transcription factor PM 98.2 3.8E-07 1.3E-11 58.7 1.7 31 32-62 4-35 (56)
97 3fl2_A E3 ubiquitin-protein li 98.1 5.6E-07 1.9E-11 67.5 1.2 45 32-77 50-95 (124)
98 2f42_A STIP1 homology and U-bo 98.1 5.2E-07 1.8E-11 72.0 1.1 49 29-78 101-150 (179)
99 2kiz_A E3 ubiquitin-protein li 98.1 1.4E-06 4.7E-11 58.3 2.8 46 28-75 8-57 (69)
100 1jm7_A BRCA1, breast cancer ty 98.1 1.2E-06 4.1E-11 64.3 2.5 45 33-77 20-66 (112)
101 3k1l_B Fancl; UBC, ring, RWD, 98.1 8.4E-07 2.9E-11 77.0 1.8 51 131-181 306-372 (381)
102 3vk6_A E3 ubiquitin-protein li 98.1 2.4E-06 8.2E-11 60.8 3.7 47 135-183 3-50 (101)
103 1jm7_B BARD1, BRCA1-associated 98.1 1.4E-06 4.7E-11 64.8 2.2 43 31-77 19-63 (117)
104 1e4u_A Transcriptional repress 98.1 2.4E-06 8.1E-11 58.9 3.2 45 30-75 7-56 (78)
105 2ep4_A Ring finger protein 24; 98.0 2.4E-06 8.1E-11 57.9 3.0 45 29-75 10-58 (74)
106 1z6u_A NP95-like ring finger p 98.0 1.3E-06 4.3E-11 68.0 1.2 44 33-77 77-121 (150)
107 2ea5_A Cell growth regulator w 98.0 4.6E-06 1.6E-10 55.9 3.7 28 32-59 13-41 (68)
108 3ng2_A RNF4, snurf, ring finge 98.0 9.8E-07 3.3E-11 59.3 0.2 42 32-75 8-57 (71)
109 2ckl_A Polycomb group ring fin 98.0 1.5E-06 5E-11 63.6 1.1 44 31-76 12-57 (108)
110 2ecm_A Ring finger and CHY zin 98.0 2.3E-06 7.8E-11 54.4 1.7 40 33-74 4-48 (55)
111 2l0b_A E3 ubiquitin-protein li 98.0 1.1E-06 3.6E-11 62.4 0.0 44 30-75 36-83 (91)
112 1iym_A EL5; ring-H2 finger, ub 97.9 6.1E-06 2.1E-10 52.4 3.5 41 32-74 3-48 (55)
113 3hct_A TNF receptor-associated 97.9 1.7E-06 5.7E-11 64.4 0.8 39 28-66 12-51 (118)
114 1chc_A Equine herpes virus-1 r 97.9 4.6E-06 1.6E-10 55.5 2.1 41 33-75 4-46 (68)
115 1g25_A CDK-activating kinase a 97.9 1.8E-06 6.3E-11 57.0 0.1 42 34-76 3-50 (65)
116 2y43_A E3 ubiquitin-protein li 97.9 3.3E-06 1.1E-10 60.7 1.3 45 31-77 19-65 (99)
117 2xeu_A Ring finger protein 4; 97.9 1.6E-06 5.3E-11 56.9 -0.5 40 33-74 2-49 (64)
118 2ckl_B Ubiquitin ligase protei 97.9 2.8E-06 9.7E-11 66.9 0.9 47 30-77 50-98 (165)
119 2ecg_A Baculoviral IAP repeat- 97.8 6.4E-07 2.2E-11 61.2 -2.7 30 31-60 22-52 (75)
120 1x4j_A Ring finger protein 38; 97.8 6E-06 2E-10 56.1 2.0 44 31-76 20-67 (75)
121 1rmd_A RAG1; V(D)J recombinati 97.8 3.5E-06 1.2E-10 62.3 0.2 36 31-66 20-56 (116)
122 4ic3_A E3 ubiquitin-protein li 97.8 5.9E-06 2E-10 56.2 1.0 33 31-63 21-55 (74)
123 3htk_C E3 SUMO-protein ligase 97.8 1.4E-05 4.8E-10 67.1 3.4 45 30-74 177-223 (267)
124 3hcs_A TNF receptor-associated 97.7 7.2E-06 2.4E-10 64.8 0.8 47 28-75 12-59 (170)
125 1v87_A Deltex protein 2; ring- 97.7 1.4E-05 4.7E-10 58.8 1.9 42 34-75 25-88 (114)
126 2bay_A PRE-mRNA splicing facto 97.5 1.2E-05 4E-10 52.7 -0.2 41 34-76 3-45 (61)
127 2yho_A E3 ubiquitin-protein li 97.3 7E-05 2.4E-09 51.5 1.2 31 33-63 17-49 (79)
128 1wim_A KIAA0161 protein; ring 97.3 4.4E-05 1.5E-09 54.2 0.2 30 33-62 4-36 (94)
129 2vje_B MDM4 protein; proto-onc 97.3 4.8E-05 1.6E-09 50.0 0.3 41 32-74 5-49 (63)
130 2ecl_A Ring-box protein 2; RNF 97.2 0.0003 1E-08 48.5 4.0 40 34-75 15-70 (81)
131 2y1n_A E3 ubiquitin-protein li 97.2 7.4E-05 2.5E-09 66.4 1.1 42 33-75 331-373 (389)
132 2vje_A E3 ubiquitin-protein li 97.1 0.00012 4E-09 48.2 1.0 41 33-75 7-51 (64)
133 3nw0_A Non-structural maintena 97.0 0.00053 1.8E-08 57.1 4.5 49 133-182 180-229 (238)
134 3t6p_A Baculoviral IAP repeat- 96.9 0.00033 1.1E-08 61.5 2.2 32 32-63 293-326 (345)
135 3m62_A Ubiquitin conjugation f 96.7 0.00071 2.4E-08 66.1 3.4 66 128-196 886-952 (968)
136 2d8s_A Cellular modulator of i 96.6 0.0018 6E-08 44.5 3.8 43 34-76 15-65 (80)
137 3dpl_R Ring-box protein 1; ubi 96.5 0.0007 2.4E-08 49.2 1.5 40 34-75 37-95 (106)
138 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0014 4.8E-08 46.8 2.1 32 133-164 3-37 (101)
139 4a0k_B E3 ubiquitin-protein li 95.9 0.0014 4.8E-08 48.4 0.0 39 35-75 49-106 (117)
140 2ct0_A Non-SMC element 1 homol 95.6 0.014 4.6E-07 39.4 4.2 44 32-75 13-58 (74)
141 2ko5_A Ring finger protein Z; 94.7 0.12 3.9E-06 36.2 6.7 49 130-183 25-74 (99)
142 2cs3_A Protein C14ORF4, MY039 94.7 0.022 7.4E-07 38.6 2.9 37 131-167 13-53 (93)
143 3i2d_A E3 SUMO-protein ligase 89.9 0.25 8.6E-06 43.3 4.0 55 132-187 248-305 (371)
144 4fo9_A E3 SUMO-protein ligase 89.2 0.32 1.1E-05 42.5 4.0 53 133-186 215-270 (360)
145 2jun_A Midline-1; B-BOX, TRIM, 85.2 0.32 1.1E-05 34.1 1.5 29 34-62 3-34 (101)
146 3k1l_B Fancl; UBC, ring, RWD, 84.8 0.36 1.2E-05 42.0 1.9 34 32-65 306-348 (381)
147 1wil_A KIAA1045 protein; ring 83.0 1.5 5E-05 30.0 3.9 46 130-176 12-73 (89)
148 2lri_C Autoimmune regulator; Z 81.8 0.95 3.3E-05 29.4 2.6 45 134-180 13-60 (66)
149 1weu_A Inhibitor of growth fam 80.6 2.6 8.9E-05 29.2 4.6 46 131-180 34-86 (91)
150 1vyx_A ORF K3, K3RING; zinc-bi 80.2 0.25 8.5E-06 31.6 -0.7 42 33-74 5-52 (60)
151 2k16_A Transcription initiatio 78.2 0.53 1.8E-05 31.3 0.5 52 131-182 16-71 (75)
152 2lv9_A Histone-lysine N-methyl 72.8 0.91 3.1E-05 32.0 0.5 46 132-178 27-75 (98)
153 1weo_A Cellulose synthase, cat 71.1 6 0.00021 27.2 4.2 48 134-183 17-71 (93)
154 3vk6_A E3 ubiquitin-protein li 70.6 0.95 3.3E-05 32.0 0.2 40 37-76 4-44 (101)
155 1wen_A Inhibitor of growth fam 70.1 2.7 9.1E-05 27.7 2.3 48 131-181 14-67 (71)
156 2yt5_A Metal-response element- 67.3 0.82 2.8E-05 29.5 -0.7 49 133-181 6-63 (66)
157 1wev_A Riken cDNA 1110020M19; 67.0 0.31 1E-05 33.7 -3.0 50 132-181 15-74 (88)
158 2lbm_A Transcriptional regulat 66.9 3.8 0.00013 30.8 2.9 45 133-179 63-117 (142)
159 1m3v_A FLIN4, fusion of the LI 66.9 2.2 7.4E-05 30.9 1.5 49 133-184 32-83 (122)
160 1x64_A Alpha-actinin-2 associa 66.3 14 0.00048 24.7 5.6 42 132-184 24-65 (89)
161 2l5u_A Chromodomain-helicase-D 63.7 3.6 0.00012 26.0 1.9 45 133-179 11-58 (61)
162 1z2q_A LM5-1; membrane protein 61.7 4.9 0.00017 27.1 2.4 31 132-162 20-54 (84)
163 2dar_A PDZ and LIM domain prot 61.6 11 0.00038 25.3 4.3 40 133-183 25-64 (90)
164 1x62_A C-terminal LIM domain p 61.0 6.6 0.00023 25.7 3.0 39 133-182 15-53 (79)
165 3o70_A PHD finger protein 13; 60.8 1.2 4.1E-05 29.1 -0.8 47 131-178 17-66 (68)
166 2l43_A N-teminal domain from h 60.8 3.5 0.00012 28.3 1.5 53 132-185 24-81 (88)
167 1wd2_A Ariadne-1 protein homol 60.7 0.63 2.2E-05 29.7 -2.2 33 134-166 7-47 (60)
168 1z60_A TFIIH basal transcripti 60.4 5.3 0.00018 25.3 2.2 39 135-176 17-58 (59)
169 2o35_A Hypothetical protein DU 60.0 3.9 0.00013 28.7 1.6 13 154-166 42-54 (105)
170 2yw8_A RUN and FYVE domain-con 59.9 3.4 0.00012 27.8 1.4 30 133-162 19-52 (82)
171 2e6r_A Jumonji/ARID domain-con 59.6 1.1 3.8E-05 31.2 -1.2 49 131-179 14-66 (92)
172 3m62_A Ubiquitin conjugation f 59.6 3.2 0.00011 40.8 1.6 48 29-78 886-935 (968)
173 3fyb_A Protein of unknown func 59.5 4 0.00014 28.6 1.6 13 154-166 41-53 (104)
174 2rgt_A Fusion of LIM/homeobox 58.9 8.4 0.00029 29.4 3.6 47 132-183 32-78 (169)
175 1x4u_A Zinc finger, FYVE domai 58.0 3.4 0.00011 28.0 1.0 29 133-161 14-46 (84)
176 3ql9_A Transcriptional regulat 57.6 9 0.00031 28.3 3.4 44 134-179 58-111 (129)
177 1fp0_A KAP-1 corepressor; PHD 57.0 4.2 0.00014 28.0 1.4 48 130-179 22-72 (88)
178 1wem_A Death associated transc 56.9 4.2 0.00014 26.9 1.4 47 133-180 16-71 (76)
179 1f62_A Transcription factor WS 56.2 3 0.0001 25.2 0.5 44 135-178 2-49 (51)
180 1mm2_A MI2-beta; PHD, zinc fin 56.1 2.2 7.5E-05 27.1 -0.2 46 133-180 9-57 (61)
181 1joc_A EEA1, early endosomal a 55.9 3.5 0.00012 30.3 0.9 28 134-161 70-101 (125)
182 2xqn_T Testin, TESS; metal-bin 55.6 7.9 0.00027 27.8 2.8 47 132-183 29-76 (126)
183 2ct7_A Ring finger protein 31; 55.4 5.3 0.00018 27.1 1.7 40 135-175 27-72 (86)
184 3nw0_A Non-structural maintena 55.1 5 0.00017 32.8 1.8 43 33-75 179-223 (238)
185 1wfk_A Zinc finger, FYVE domai 52.4 4.9 0.00017 27.5 1.2 48 134-181 10-65 (88)
186 1vfy_A Phosphatidylinositol-3- 52.4 4.8 0.00016 26.4 1.0 27 135-161 13-43 (73)
187 2cs3_A Protein C14ORF4, MY039 52.3 9.5 0.00033 25.7 2.5 29 32-60 13-46 (93)
188 2d8v_A Zinc finger FYVE domain 51.4 7.8 0.00027 25.0 1.9 30 132-162 7-37 (67)
189 2jvx_A NF-kappa-B essential mo 51.4 5 0.00017 21.4 0.8 15 33-47 2-16 (28)
190 3t7l_A Zinc finger FYVE domain 50.5 4.9 0.00017 27.6 0.9 30 134-163 21-54 (90)
191 2xjy_A Rhombotin-2; oncoprotei 50.3 9.7 0.00033 27.5 2.6 49 132-183 28-79 (131)
192 2cor_A Pinch protein; LIM doma 50.0 14 0.00049 24.2 3.2 40 133-183 15-54 (79)
193 2jmo_A Parkin; IBR, E3 ligase, 48.7 1.2 4.2E-05 30.0 -2.5 16 150-165 55-70 (80)
194 2jtn_A LIM domain-binding prot 46.8 8.2 0.00028 29.8 1.8 47 132-183 86-132 (182)
195 3mjh_B Early endosome antigen 46.7 5.3 0.00018 22.3 0.4 14 34-47 5-18 (34)
196 1rut_X Flinc4, fusion protein 46.2 6.5 0.00022 30.6 1.1 48 132-182 31-81 (188)
197 2vnf_A ING 4, P29ING4, inhibit 46.1 3 0.0001 26.4 -0.7 43 132-178 9-58 (60)
198 3mpx_A FYVE, rhogef and PH dom 45.6 4.4 0.00015 35.8 0.0 48 133-180 375-430 (434)
199 2ku3_A Bromodomain-containing 44.7 4.2 0.00014 26.7 -0.2 47 132-179 15-66 (71)
200 3c6w_A P28ING5, inhibitor of g 44.4 3.4 0.00012 26.1 -0.7 43 132-178 8-57 (59)
201 1wfp_A Zinc finger (AN1-like) 44.2 51 0.0017 21.7 5.0 28 132-159 24-52 (74)
202 2yql_A PHD finger protein 21A; 43.8 2.2 7.6E-05 26.5 -1.6 44 133-178 9-55 (56)
203 2ebv_A Nuclear pore complex pr 42.5 45 0.0015 20.8 4.4 14 29-42 26-39 (57)
204 1nyp_A Pinch protein; LIM doma 42.3 16 0.00055 22.7 2.4 38 134-182 6-43 (66)
205 1wfl_A Zinc finger protein 216 41.4 47 0.0016 21.9 4.5 27 133-159 25-52 (74)
206 1wff_A Riken cDNA 2810002D23 p 40.4 65 0.0022 21.8 5.2 27 133-159 25-53 (85)
207 2d8x_A Protein pinch; LIM doma 40.1 12 0.00042 23.6 1.5 37 135-182 7-43 (70)
208 2cup_A Skeletal muscle LIM-pro 39.5 9 0.00031 26.3 0.9 46 132-182 32-78 (101)
209 2puy_A PHD finger protein 21A; 39.2 2.3 7.7E-05 26.8 -2.2 46 134-181 6-54 (60)
210 1dvp_A HRS, hepatocyte growth 39.1 7 0.00024 31.4 0.3 28 134-161 162-193 (220)
211 1we9_A PHD finger family prote 38.9 5.1 0.00018 25.4 -0.5 48 132-179 5-58 (64)
212 2d8z_A Four and A half LIM dom 37.4 20 0.00067 22.5 2.3 36 135-181 7-42 (70)
213 2ffw_A Midline-1; B-BOX, ring 36.5 32 0.0011 22.6 3.2 30 133-162 30-62 (78)
214 3zyq_A Hepatocyte growth facto 36.5 9.2 0.00031 30.9 0.6 29 134-162 165-197 (226)
215 2l3k_A Rhombotin-2, linker, LI 36.3 1.1E+02 0.0038 21.5 7.1 45 132-181 35-81 (123)
216 1wyh_A SLIM 2, skeletal muscle 35.9 28 0.00097 21.9 2.9 37 135-182 7-45 (72)
217 2gmg_A Hypothetical protein PF 35.6 21 0.00073 25.2 2.3 31 146-184 68-98 (105)
218 3u5n_A E3 ubiquitin-protein li 35.6 4.4 0.00015 32.3 -1.5 46 134-181 8-56 (207)
219 1y02_A CARP2, FYVE-ring finger 35.5 13 0.00046 27.0 1.3 43 134-179 20-66 (120)
220 2g6q_A Inhibitor of growth pro 34.9 5.9 0.0002 25.2 -0.7 44 132-178 10-59 (62)
221 1wep_A PHF8; structural genomi 34.5 31 0.0011 22.7 2.9 47 133-180 12-64 (79)
222 1v6g_A Actin binding LIM prote 34.5 17 0.0006 23.7 1.7 39 135-184 17-55 (81)
223 1wg2_A Zinc finger (AN1-like) 34.1 46 0.0016 21.2 3.5 26 134-159 16-42 (64)
224 1xwh_A Autoimmune regulator; P 33.6 5.1 0.00017 25.7 -1.2 45 133-179 8-55 (66)
225 3v43_A Histone acetyltransfera 33.2 42 0.0014 23.7 3.6 44 134-177 6-62 (112)
226 1wfh_A Zinc finger (AN1-like) 33.1 51 0.0017 21.1 3.5 26 134-159 16-42 (64)
227 1wew_A DNA-binding family prot 33.0 17 0.00057 24.0 1.3 49 131-180 14-73 (78)
228 1x4l_A Skeletal muscle LIM-pro 32.9 22 0.00075 22.5 1.9 38 134-182 6-47 (72)
229 2d8y_A Eplin protein; LIM doma 32.9 44 0.0015 22.2 3.6 39 134-183 16-55 (91)
230 1x68_A FHL5 protein; four-and- 32.0 22 0.00077 22.8 1.9 39 134-183 6-48 (76)
231 3c5k_A HD6, histone deacetylas 31.7 15 0.00051 26.2 1.0 24 134-157 25-48 (109)
232 2cu8_A Cysteine-rich protein 2 31.7 21 0.00073 22.9 1.7 39 134-183 10-49 (76)
233 3o36_A Transcription intermedi 31.3 7.6 0.00026 30.2 -0.7 45 134-180 5-52 (184)
234 2cur_A Skeletal muscle LIM-pro 31.0 20 0.00069 22.5 1.5 25 135-159 7-31 (69)
235 2jmi_A Protein YNG1, ING1 homo 30.8 8 0.00027 26.7 -0.6 46 131-178 24-75 (90)
236 1x63_A Skeletal muscle LIM-pro 30.5 27 0.00092 22.7 2.1 39 134-183 16-56 (82)
237 3shb_A E3 ubiquitin-protein li 30.2 5.4 0.00018 26.6 -1.5 44 135-178 28-76 (77)
238 2fiy_A Protein FDHE homolog; F 30.0 3.1 0.0001 35.6 -3.5 46 131-179 180-231 (309)
239 2dj7_A Actin-binding LIM prote 29.4 33 0.0011 22.4 2.4 38 133-181 15-53 (80)
240 2e6s_A E3 ubiquitin-protein li 29.4 6.1 0.00021 26.3 -1.4 44 135-178 28-76 (77)
241 1wig_A KIAA1808 protein; LIM d 29.3 19 0.00066 23.1 1.1 36 135-181 7-42 (73)
242 2cuq_A Four and A half LIM dom 29.1 27 0.00093 22.5 1.9 36 135-181 17-52 (80)
243 1x4k_A Skeletal muscle LIM-pro 28.8 25 0.00087 22.1 1.7 37 135-182 7-45 (72)
244 2l4z_A DNA endonuclease RBBP8, 28.8 52 0.0018 23.5 3.6 38 133-181 61-99 (123)
245 2pv0_B DNA (cytosine-5)-methyl 28.6 31 0.0011 30.3 2.6 46 133-179 93-148 (386)
246 1wee_A PHD finger family prote 28.4 9.7 0.00033 24.8 -0.5 49 130-179 13-66 (72)
247 2co8_A NEDD9 interacting prote 27.9 50 0.0017 21.5 3.1 41 133-184 15-56 (82)
248 2jny_A Uncharacterized BCR; st 27.9 15 0.00051 23.8 0.4 46 130-194 7-52 (67)
249 1x6a_A LIMK-2, LIM domain kina 27.4 20 0.00068 23.3 0.9 36 135-181 17-52 (81)
250 1x4w_A Hypothetical protein FL 27.0 37 0.0013 21.9 2.1 25 34-58 15-43 (67)
251 3asl_A E3 ubiquitin-protein li 26.9 8.7 0.0003 25.0 -0.9 44 135-178 20-68 (70)
252 2dlo_A Thyroid receptor-intera 26.7 23 0.00078 23.1 1.2 37 134-181 16-52 (81)
253 3ask_A E3 ubiquitin-protein li 25.8 9.2 0.00031 31.1 -1.2 44 135-178 176-224 (226)
254 2jr6_A UPF0434 protein NMA0874 25.7 20 0.00068 23.2 0.7 46 130-194 5-50 (68)
255 1x3h_A Leupaxin; paxillin fami 25.5 29 0.00099 22.4 1.5 37 135-182 17-53 (80)
256 1x61_A Thyroid receptor intera 25.4 74 0.0025 19.8 3.5 35 132-166 32-67 (72)
257 2cot_A Zinc finger protein 435 25.2 66 0.0023 19.9 3.3 14 32-45 16-29 (77)
258 2ro1_A Transcription intermedi 24.6 14 0.00047 29.0 -0.3 46 134-179 3-49 (189)
259 3a1b_A DNA (cytosine-5)-methyl 24.5 30 0.001 26.4 1.6 43 133-178 79-133 (159)
260 2ysm_A Myeloid/lymphoid or mix 23.6 7.3 0.00025 27.6 -2.0 45 135-179 56-104 (111)
261 3o7a_A PHD finger protein 13 v 23.1 10 0.00035 22.9 -1.1 28 151-178 24-51 (52)
262 1iml_A CRIP, cysteine rich int 23.0 35 0.0012 21.8 1.5 43 132-179 26-70 (76)
263 1wfe_A Riken cDNA 2310008M20 p 22.0 88 0.003 21.1 3.4 27 132-158 24-53 (86)
264 2jne_A Hypothetical protein YF 21.7 3.9 0.00013 28.6 -3.5 40 134-181 33-72 (101)
265 2ehe_A Four and A half LIM dom 21.7 48 0.0016 21.4 2.0 38 135-183 17-56 (82)
266 4gne_A Histone-lysine N-methyl 21.5 35 0.0012 24.1 1.3 46 132-182 14-65 (107)
267 1g47_A Pinch protein; LIM doma 21.3 50 0.0017 20.9 2.1 39 134-183 12-52 (77)
268 1zbd_B Rabphilin-3A; G protein 21.1 22 0.00076 26.3 0.2 46 134-179 56-107 (134)
269 2uzg_A Ubiquitin carboxyl-term 21.0 41 0.0014 23.2 1.6 25 134-158 26-53 (97)
270 2iyb_E Testin, TESS, TES; LIM 20.9 37 0.0013 21.0 1.3 38 135-183 4-45 (65)
271 2j9u_B VPS36, vacuolar protein 20.7 36 0.0012 22.5 1.2 12 30-41 13-24 (76)
272 2elr_A Zinc finger protein 406 20.6 62 0.0021 16.2 2.1 15 32-46 7-21 (36)
273 2js4_A UPF0434 protein BB2007; 20.4 21 0.00073 23.2 0.0 46 130-194 5-50 (70)
No 1
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.82 E-value=2e-21 Score=148.95 Aligned_cols=114 Identities=27% Similarity=0.541 Sum_probs=85.2
Q ss_pred CCceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCCCCCCCCCCCCCccccccchhhhhcccccc
Q psy2200 32 SQIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPRDEVPPRPQGQRTERENSSVQSKVSNMATT 103 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~p~rp~~~~~e~~~~~~~~~~~~~~~~ 103 (248)
...++|+||++.+.+| ++++|||.| ..|+..|+.... .+|....+-.... +..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~-------------l~~l--- 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINHKR-------------YHPI--- 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS--BCTTTCCBCTTTC-------------EEEC---
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC--CCCCCCCcCcccc-------------cccc---
Confidence 3468999999999998 999999999 567778876443 4443322111100 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200 104 SSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVC 176 (248)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 176 (248)
....+...|+||++.+.++ +.++|||+||..||.+|++... +||+|
T Consensus 67 ------------------------~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~C 119 (133)
T 4ap4_A 67 ------------------------YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTC 119 (133)
T ss_dssp ------------------------BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS---BCTTT
T ss_pred ------------------------ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC---CCCCC
Confidence 0012336899999998876 8889999999999999999866 99999
Q ss_pred ccccccCCceeeec
Q psy2200 177 KAAIDKDKVIPVYG 190 (248)
Q Consensus 177 r~~~~~~~~~~~~~ 190 (248)
|..+..++++++|.
T Consensus 120 r~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 120 RKKINHKRYHPIYI 133 (133)
T ss_dssp CCBCCGGGEEEECC
T ss_pred CCcCChhcceeeeC
Confidence 99999999999883
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=103.84 Aligned_cols=61 Identities=21% Similarity=0.454 Sum_probs=52.1
Q ss_pred CccCCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200 126 GENDKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189 (248)
Q Consensus 126 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 189 (248)
+.....+.+.|+||++.+.+|+.+ +|||+||..||..|++... .||+||+.+...++..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN---RCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS---SCTTTCCCCCSSCSCCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC---cCCCcCcccCcccccccC
Confidence 344456678999999999999997 9999999999999998765 999999999887765543
No 3
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=6.7e-15 Score=103.71 Aligned_cols=68 Identities=25% Similarity=0.535 Sum_probs=57.8
Q ss_pred cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhC---CCCCcccccccccccCCceeeecCCCCC
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETC---PNRQTCPVCKAAIDKDKVIPVYGRGGSS 195 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 195 (248)
....+.+.|+||++.+.+|++++|||+||..|+..|+... .+...||+||..+...++.+++.+.+.+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 3345668999999999999999999999999999999873 1245999999999999999888776653
No 4
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=103.40 Aligned_cols=67 Identities=24% Similarity=0.544 Sum_probs=56.8
Q ss_pred cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHh---CCCCCcccccccccccCCceeeecCCCC
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLET---CPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
....+.+.|+||++.+.+|+.++|||+||..|+..|+.. ..+...||+||..+...++.+++.+.+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 345567899999999999999999999999999999987 1224599999999999888888877665
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.54 E-value=4.1e-15 Score=103.49 Aligned_cols=63 Identities=24% Similarity=0.497 Sum_probs=54.8
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
..+.+.|+||++.+.+|++++|||+||..||..|+... ...||+||..+...++.+++.+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--~~~CP~C~~~~~~~~l~~n~~l~~~ 67 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--HKTCPKSQETLLHAGLTPNYVLKSL 67 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--CCBCTTTCCBCSSCCCEECTTTHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--cCCCCCCcCCCChhhCccCHHHHHH
Confidence 35568999999999999999999999999999999862 3499999999998888888776544
No 6
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.3e-15 Score=99.28 Aligned_cols=58 Identities=29% Similarity=0.592 Sum_probs=48.9
Q ss_pred CccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 126 GENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 126 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
......+.+.|+||++.+.+|+.++|||+||..||..|+... ...||+||+.+..+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS--SPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS--SCCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC--cCCCCCCCcCCChhhc
Confidence 334456679999999999999999999999999999999632 3489999999987664
No 7
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=7.8e-15 Score=101.19 Aligned_cols=56 Identities=29% Similarity=0.577 Sum_probs=47.3
Q ss_pred CccCCCCceeecccccccCCcEEcc-CCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 126 GENDKGQIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 126 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
......+.+.|+||++.+.+|+.++ |||+||..||..|+.... ...||+||+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-EHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-SSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-CCcCCCCCCcCCC
Confidence 3444567789999999999999999 999999999999998753 3589999997543
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.9e-15 Score=100.14 Aligned_cols=59 Identities=36% Similarity=0.687 Sum_probs=49.6
Q ss_pred ccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 127 ENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 127 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
.....+.+.|+||++.+.+|++++|||+||..||..|++.......||+||+.+..+++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34456678999999999999999999999999999999743335599999999986654
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-15 Score=105.49 Aligned_cols=66 Identities=20% Similarity=0.484 Sum_probs=56.1
Q ss_pred CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhC----CCCCcccccccccccCCceeeecCCCC
Q psy2200 129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETC----PNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
...+.+.|+||++.+.+|+.++|||+||..||..|+... .....||+||..+...++.+++.+.+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 345668999999999999999999999999999999862 124599999999998888888877665
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=104.28 Aligned_cols=66 Identities=27% Similarity=0.483 Sum_probs=54.7
Q ss_pred cCCCCceeecccccccCCcEEcc-CCCccCHhHHHHHHHhCCCCCccccccccc-ccCCceeeecCCCC
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAI-DKDKVIPVYGRGGS 194 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~-~~~~~~~~~~~~~~ 194 (248)
....+.+.|+||++.+.+|+.++ |||+||..||..|+.... ...||+||..+ ....+.+++.+.+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~~~~~~~n~~l~~~ 75 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-EHTCPTCHQNDVSPDALIANKFLRQA 75 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-TCCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-CCcCcCCCCcCCCccccCcCHHHHHH
Confidence 34566789999999999999999 999999999999997643 45899999997 56677777766544
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=4.4e-15 Score=101.33 Aligned_cols=56 Identities=36% Similarity=0.902 Sum_probs=50.5
Q ss_pred CCceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200 131 GQIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 189 (248)
.+.+.|+||++.+.++ +.++|||+||..||..|++... .||+||+.+...++.++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS---BCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC---CCCCCCCccChhheeecc
Confidence 3457899999999887 8899999999999999999876 999999999999888877
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=100.56 Aligned_cols=50 Identities=24% Similarity=0.722 Sum_probs=45.2
Q ss_pred CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
.....+.|+||++.+.+|++++|||+||..||..|++... .||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP---RCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS---BCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC---cCCCcCcccc
Confidence 3455689999999999999999999999999999998765 9999999986
No 13
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.50 E-value=1.1e-14 Score=103.11 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=56.7
Q ss_pred cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
....+.+.|+||++.|.+||+++|||+||+.||..|+.... +||+|+..+...+++++..+...
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~---~cP~~~~~l~~~~l~pn~~L~~~ 72 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP---TDPFNRQMLTESMLEPVPELKEQ 72 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCS---BCTTTCCBCCGGGCEECHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCC---CCCCCcCCCChHhcchHHHHHHH
Confidence 34566799999999999999999999999999999999755 99999999999899998876544
No 14
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.49 E-value=2.4e-14 Score=104.10 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=58.8
Q ss_pred cCCCCceeecccccccCCcEEccCC-CccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCCC
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCG-HLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSK 196 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~ 196 (248)
....+.+.|+||++.|.+||+++|| |+||+.||..|+.... +||+||..+...++++++.+...+.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~---~cP~~~~~l~~~~L~pn~~Lk~~I~ 83 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ---TDPFNRSPLTMDQIRPNTELKEKIQ 83 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC---BCTTTCSBCCTTTSEECHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCC---CCCCCCCCCChhhceEcHHHHHHHH
Confidence 4456779999999999999999999 9999999999998754 9999999999999999988776653
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.49 E-value=9.6e-15 Score=97.45 Aligned_cols=54 Identities=37% Similarity=0.958 Sum_probs=49.4
Q ss_pred ceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200 133 IYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189 (248)
Q Consensus 133 ~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 189 (248)
.+.|+||++.+.++ +.++|||.||..|+.+|++... .||+||+.+...++.++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS---BCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC---CCCCCCccCCccceeeee
Confidence 46899999999876 8889999999999999999865 999999999999998887
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.6e-15 Score=101.04 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=45.9
Q ss_pred CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
.+.+.|+||++.+.+++.++|||+||..||..|+.... .||+||..+...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK---RCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS---BCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC---cCcCcCchhCHhhc
Confidence 44578999999999999999999999999999998765 99999999876543
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.6e-14 Score=99.37 Aligned_cols=58 Identities=24% Similarity=0.694 Sum_probs=48.9
Q ss_pred cCCCCceeecccccccCC----cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 128 NDKGQIYDCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
+...+.+.|+||++.+.+ |+.++|||.||..|+..|+........||+||..+...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 344566899999999998 9999999999999999999986334599999999876543
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3e-14 Score=96.44 Aligned_cols=50 Identities=36% Similarity=0.884 Sum_probs=44.1
Q ss_pred CCCceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 130 KGQIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
..+.+.|+||++.+.++ +.++|||+||..||..|+.... .||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS---SCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC---CCCCCCCccCc
Confidence 34567999999999877 8899999999999999999865 99999998864
No 19
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.46 E-value=2.6e-14 Score=104.32 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=57.6
Q ss_pred cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 195 (248)
....+.+.|+||++.|.+||+++|||+||+.||..|+.... +||+|+.++...++++++.+...+
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~---~cP~~~~~l~~~~L~pn~~Lk~~I 88 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP---TDPFNRQTLTESMLEPVPELKEQI 88 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCS---BCSSSCCBCCTTSSEECHHHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCC---CCCCCCCCCChhhceECHHHHHHH
Confidence 34566799999999999999999999999999999998654 999999999999999998776554
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=92.16 Aligned_cols=50 Identities=38% Similarity=0.705 Sum_probs=42.8
Q ss_pred ccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200 127 ENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176 (248)
Q Consensus 127 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 176 (248)
.+...+.+.|+||++.+.+|++++|||+||..||..|++.......||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34456678999999999999999999999999999999864335589998
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=5.9e-14 Score=97.54 Aligned_cols=55 Identities=27% Similarity=0.672 Sum_probs=45.9
Q ss_pred CCCceeecccccccCCc---EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCcee
Q psy2200 130 KGQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 187 (248)
......|+||++.+.++ ++++|||.||..||.+|++... .||+||+.+...++.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD---SCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC---SCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC---cCcCcCCccCCcccCC
Confidence 34557999999998755 5679999999999999998765 9999999998766544
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-14 Score=96.60 Aligned_cols=54 Identities=28% Similarity=0.793 Sum_probs=46.1
Q ss_pred cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
....+...|+||++.+.+ ++++|||.||..|+..|+.... .||+||..+...+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHR---NCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCS---SCHHHHHCTTCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcC---cCCCcCCcccCCCc
Confidence 344556899999999999 9999999999999999998654 99999999886543
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.43 E-value=4.1e-14 Score=103.29 Aligned_cols=63 Identities=24% Similarity=0.747 Sum_probs=53.7
Q ss_pred CCCCceeecccccccCCcEE-ccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCC
Q psy2200 129 DKGQIYDCNICLDTAKDAVI-SMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193 (248)
Q Consensus 129 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 193 (248)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+.... ..||+||..+...++.+++.+..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~l~~~~~~~~ 81 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--AQCPHCRAPLQLRELVNCRWAEE 81 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECTTHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc--CCCCCCCCcCCHHHhHhhHHHHH
Confidence 34456899999999999999 99999999999999999862 38999999999888877765443
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=1.4e-13 Score=92.30 Aligned_cols=56 Identities=20% Similarity=0.523 Sum_probs=47.8
Q ss_pred ceeeccccc-ccCCc----EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200 133 IYDCNICLD-TAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG 190 (248)
Q Consensus 133 ~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 190 (248)
.+.|+||++ .+.++ ++++|||+||..||.+|+... ...||+||+.+...++.+++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--AGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--SSSCTTTCCCCSSCCCEEECC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--CCcCCCCCCccccccceeecc
Confidence 468999999 88888 578999999999999998753 348999999999988887653
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=89.19 Aligned_cols=49 Identities=37% Similarity=0.904 Sum_probs=41.1
Q ss_pred cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 176 (248)
+...+.+.|+||++.+.+|++++|||+||..||..|+........||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445668999999999999999999999999999997642235699998
No 26
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.39 E-value=1.7e-13 Score=101.76 Aligned_cols=62 Identities=31% Similarity=0.680 Sum_probs=53.1
Q ss_pred CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCC
Q psy2200 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 193 (248)
+.+.|+||++.+.+|+.++|||+||..||..|+....+...||+||..+...++.+++.+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~ 81 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHH
Confidence 35689999999999999999999999999999987544568999999999888777665543
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=100.23 Aligned_cols=62 Identities=21% Similarity=0.511 Sum_probs=53.7
Q ss_pred CCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
..+.+.|+||++.+.+|+.+ +|||.||..||..|+.... .||+||..+...++.+++.+.+.
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~~ 81 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT---QCPTCCVTVTEPDLKNNRILDEL 81 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC---BCTTTCCBCCGGGCEECHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC---CCCCCCCcCChhhCCcCHHHHHH
Confidence 34567999999999999998 8999999999999998755 99999999998888887766544
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=6e-13 Score=90.19 Aligned_cols=49 Identities=37% Similarity=0.791 Sum_probs=42.2
Q ss_pred CCceeecccccccC---CcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 131 GQIYDCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 131 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.....|+||++.+. .++.++|||.||..||..|+.... .||+||+.+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK---KCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS---BCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC---CCcCcCccccC
Confidence 44578999999875 457789999999999999999876 89999999864
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.36 E-value=2.4e-13 Score=102.98 Aligned_cols=62 Identities=16% Similarity=0.430 Sum_probs=51.0
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc-CCceeeecCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK-DKVIPVYGRGG 193 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~ 193 (248)
..+.+.|+||++.+.+|+.++|||+||..||..|+... ...||+||..+.. ..+.+++.+..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~n~~l~~ 111 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--VFSCPACRYDLGRSYAMQVNQPLQT 111 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCTTCCCCCCHHHHH
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC--cCCCCCCCccCCCCCCCCCCHHHHH
Confidence 34567899999999999999999999999999999842 3489999999986 55656555443
No 30
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.2e-13 Score=91.35 Aligned_cols=50 Identities=32% Similarity=0.695 Sum_probs=42.4
Q ss_pred CCCceeecccccccCCc---EEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 130 KGQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
......|+||++.+.++ ++++|||.||..||..|++... .||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~---~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK---VCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS---BCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC---cCCCcCccccc
Confidence 44557999999998765 4459999999999999999876 99999998864
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=2.3e-13 Score=105.01 Aligned_cols=48 Identities=31% Similarity=0.826 Sum_probs=43.7
Q ss_pred CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
+.+.|+||++.+.+|++++|||.||..||..|+.... .||+||..+..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI---ECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS---BCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC---cCCCCCCcCCC
Confidence 3468999999999999999999999999999998765 99999999864
No 32
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4e-13 Score=96.89 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=55.9
Q ss_pred CCceeecccccccCCcEEcc-CCCccCHhHHHHHHHhC---CCCCcccc--cccc-cccCCceeeecCCCCCC
Q psy2200 131 GQIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETC---PNRQTCPV--CKAA-IDKDKVIPVYGRGGSSK 196 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~---~~~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~ 196 (248)
...+.|+||++.|.+||+++ |||+||+.||..|+... .+...||+ |+.. +...++++++.+...+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~ 77 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIE 77 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHH
Confidence 44589999999999999996 99999999999999864 12458999 9887 88889999988776654
No 33
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.34 E-value=6.1e-13 Score=85.96 Aligned_cols=46 Identities=30% Similarity=0.722 Sum_probs=40.8
Q ss_pred ceeecccccccCC----cEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 133 IYDCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 133 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
...|+||++.+.+ ++.++|||.||..||..|++... .||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY---RCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC---CCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC---cCCCCCCcCC
Confidence 4689999999865 68889999999999999999875 9999998874
No 34
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=7.2e-13 Score=91.37 Aligned_cols=49 Identities=27% Similarity=0.687 Sum_probs=43.0
Q ss_pred CCceeecccccccCCc---EEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 131 GQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.+...|+||++.+..+ +.++|||.||..||..|++... .||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~---~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR---TCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS---SCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC---cCcCcCCcCCC
Confidence 3457899999998876 7789999999999999999876 99999998864
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.33 E-value=3.7e-13 Score=99.46 Aligned_cols=51 Identities=31% Similarity=0.661 Sum_probs=45.9
Q ss_pred CCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 130 KGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
..+.+.|+||++.+.+|+.+ +|||+||..||..|+.... .||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK---YCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCS---BCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCC---cCcCCCcccccc
Confidence 34568999999999999998 9999999999999998765 999999998865
No 36
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.32 E-value=6.9e-13 Score=85.76 Aligned_cols=47 Identities=34% Similarity=0.838 Sum_probs=41.0
Q ss_pred CceeecccccccCC---cEEcc-CCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 132 QIYDCNICLDTAKD---AVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 132 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
+...|+||++.+.+ ++.++ |||.||..|+.+|++... .||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~---~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS---TCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC---SCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC---cCcCCCCEeE
Confidence 44689999999887 67887 999999999999998765 9999998764
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.32 E-value=7.1e-13 Score=100.93 Aligned_cols=58 Identities=34% Similarity=0.840 Sum_probs=51.9
Q ss_pred CceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCC
Q psy2200 132 QIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG 192 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 192 (248)
+.+.|+||++.+.++ +.++|||+||..||.+|++... .||+||+.+...++.++|...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~l~~l~i~~ 70 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINHKRYHPIYIGS 70 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS---BCTTTCCBCTTTCEEECBCSS
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC---CCCCCCCcCccccccccccCC
Confidence 457999999999988 9999999999999999998766 999999999999988877543
No 38
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=93.79 Aligned_cols=49 Identities=37% Similarity=0.777 Sum_probs=42.6
Q ss_pred CCceeecccccccCC---cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 131 GQIYDCNICLDTAKD---AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.....|+||++.+.. ++.++|||.||..||..|+.... .||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~---~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG---TCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC---BCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC---cCcCcCccCCC
Confidence 345789999998876 67889999999999999998765 99999998863
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.31 E-value=1.2e-12 Score=98.20 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=54.4
Q ss_pred CccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCC
Q psy2200 126 GENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG 192 (248)
Q Consensus 126 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 192 (248)
......+.+.|+||++.+.+|+.++|||+||..||..|+.... ..||+||..+...++.++..+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~~~~l~ 75 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFPDNFAK 75 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGGGCEECHHHH
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--CCCCCCCCCcCHHhcccCHHHH
Confidence 3445667789999999999999999999999999999998743 3899999999887777665443
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=2.5e-13 Score=106.33 Aligned_cols=62 Identities=23% Similarity=0.470 Sum_probs=51.7
Q ss_pred CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC-CceeeecCCCC
Q psy2200 131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD-KVIPVYGRGGS 194 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~~~~~ 194 (248)
.+.+.|+||++.+.+|++++|||+||..||..|+... ...||+||..+... .+.+++.+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~l~~n~~l~~l 138 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--VFSCPACRHDLGQNYIMIPNEILQTL 138 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCTTCCCCBCHHHHHH
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC--CCcCCCCCccCCCCCCCCCCHHHHHH
Confidence 4567999999999999999999999999999999863 34899999999877 56666554443
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=2.2e-12 Score=87.06 Aligned_cols=46 Identities=35% Similarity=1.024 Sum_probs=41.7
Q ss_pred ceeecccccccCCc-EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 133 IYDCNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 133 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
...|+||++.+.++ +.++|||.||..|+..|++... .||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP---TCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC---STTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC---cCcCCChhhH
Confidence 35899999999986 7889999999999999999866 9999999886
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=5.3e-13 Score=99.70 Aligned_cols=51 Identities=25% Similarity=0.716 Sum_probs=44.5
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
..+.+.|+||++.+.+|+.++|||+||..||..|+... ...||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA--SLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT--TSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC--cCCCCCCCcccCc
Confidence 34568999999999999999999999999999999752 3489999999863
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=2.3e-12 Score=96.35 Aligned_cols=54 Identities=28% Similarity=0.602 Sum_probs=47.0
Q ss_pred CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200 131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 186 (248)
.+.+.|+||++.+.+|+.++|||+||..||..|+.... ..||+||..+...++.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMG--SYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCB
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc--CcCCCCCCCCCHhhcc
Confidence 34679999999999999999999999999999998732 3899999999876654
No 44
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=100.53 Aligned_cols=53 Identities=25% Similarity=0.526 Sum_probs=46.3
Q ss_pred cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
....+.+.|+||++.+.+|+.++|||+||..||..|+... ...||+||..+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--PQNCAACVHEGIY 78 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--CEECHHHHHTTCC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--CCCCCCCCCcccc
Confidence 4567789999999999999999999999999999999753 3489999997643
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.24 E-value=2.9e-12 Score=109.44 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=55.8
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 195 (248)
....+.|+||++.+.+||+++|||+||+.||..|+.... ..||+||.++...+++|+..+...+
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--~~cP~~~~~~~~~~l~~n~~l~~~i 268 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFNPVTRSPLTQEQLIPNLAMKEVI 268 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--SSCTTTCCCCCGGGCEECHHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--CCCcCCCCCCchhcCcccHHHHHHH
Confidence 345689999999999999999999999999999998744 2599999999999999988776554
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.24 E-value=3.2e-12 Score=102.32 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS 195 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 195 (248)
....+.|+||++.|.+||+++|||+||..||..|+...+ .+||+|+.++...+++||+.+...+
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~~~L~pN~~Lk~~I 166 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQDQLIPNLAMKEVI 166 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--CCCCCCcCCCChhhCcchHHHHHHH
Confidence 456799999999999999999999999999999998753 2799999999999999998766543
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.24 E-value=1.6e-12 Score=103.26 Aligned_cols=61 Identities=26% Similarity=0.549 Sum_probs=48.7
Q ss_pred CCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCccccccccccc-CCceeeecCC
Q psy2200 130 KGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK-DKVIPVYGRG 192 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~ 192 (248)
....+.|+||++.+.+|+.+ +|||+||..||..|+... ...||+||..+.. ..+.+++.+.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~l~~~~~l~ 113 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--NKECPTCRKKLVSKRSLRPDPNFD 113 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--CCBCTTTCCBCCSGGGEEECHHHH
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--cCCCCCCCCcCCCcccCCcCHHHH
Confidence 45568999999999999988 999999999999999962 2489999999853 3444444333
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=7.9e-13 Score=99.12 Aligned_cols=59 Identities=20% Similarity=0.504 Sum_probs=51.5
Q ss_pred CCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200 131 GQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
.+.+.|+||++.+.+|+.+ +|||+||..||..|+. . .||+||..+...++.+++.+...
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~---~CP~Cr~~~~~~~~~~n~~l~~l 79 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--T---GCPVCYTPAWIQDLKINRQLDSM 79 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--T---BCSSSCCBCSCSSCCCCHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--C---CCcCCCCcCccccccccHHHHHH
Confidence 4568999999999999999 9999999999999987 3 89999999988888777766544
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.21 E-value=8.2e-12 Score=92.93 Aligned_cols=50 Identities=28% Similarity=0.602 Sum_probs=40.4
Q ss_pred eeecccccccCCcE------------------EccCCCccCHhHHHHHHHhCC--CCCcccccccccccC
Q psy2200 134 YDCNICLDTAKDAV------------------ISMCGHLFCWPCLHQWLETCP--NRQTCPVCKAAIDKD 183 (248)
Q Consensus 134 ~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~ 183 (248)
..|+||++.+.++. +++|||.||..||..|+.... ....||+||+.+...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 58999999987654 789999999999999996421 245999999988643
No 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.6e-12 Score=87.33 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=39.7
Q ss_pred ceeecccccccCC--------------cEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 133 IYDCNICLDTAKD--------------AVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 133 ~~~C~IC~~~~~~--------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
...|+||++.+.+ ++.+ +|||.||..||.+|+..+. +||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC---BCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC---CCCCcCCCcchh
Confidence 3579999998865 4455 5999999999999999876 999999988643
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=1.4e-11 Score=85.53 Aligned_cols=54 Identities=24% Similarity=0.607 Sum_probs=42.8
Q ss_pred CCCceeecccccccC--CcEEcc--CCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 130 KGQIYDCNICLDTAK--DAVISM--CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~--~p~~~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
..+.+.|+||++.+. ++++++ |||.||..|+..++... ...||+||+.+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--NGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--CSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--CCCCCCCCCccCCCch
Confidence 345689999999874 445555 99999999999988642 3599999999987654
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=3.1e-12 Score=83.24 Aligned_cols=46 Identities=30% Similarity=0.590 Sum_probs=39.8
Q ss_pred CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.+.+.|+||++.+.+|++++|||+||..|+..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------CCCCCcCCcEeec
Confidence 345789999999999999999999999998772 3489999998864
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.17 E-value=9.4e-12 Score=83.18 Aligned_cols=52 Identities=33% Similarity=0.774 Sum_probs=45.2
Q ss_pred ceeecccccccCCcEEc--cCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200 133 IYDCNICLDTAKDAVIS--MCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 189 (248)
...|.||++...+++++ +|||. ||..|+..|++... .||+||+.+. .++++|
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~---~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK---PCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC---CCTTTCCCCC--EEEEEE
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC---cCCCcCcchh--ceEeee
Confidence 45899999999999987 99999 89999999998655 8999999985 566666
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.16 E-value=1.1e-11 Score=82.61 Aligned_cols=52 Identities=33% Similarity=0.797 Sum_probs=45.0
Q ss_pred ceeecccccccCCcEEc--cCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200 133 IYDCNICLDTAKDAVIS--MCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 189 (248)
...|.||++...+++++ +|||. ||..|+..|.+... .||+||+.+. .++.+|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~---~CPiCR~~i~--~~i~i~ 61 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA---SCPICKKEIQ--LVIKVF 61 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC---BCTTTCCBCC--EEEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC---cCCCcCchhh--ceEEEe
Confidence 35899999999999887 99998 99999999998754 9999999985 556665
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=97.60 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=54.2
Q ss_pred CccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCC
Q psy2200 126 GENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG 192 (248)
Q Consensus 126 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 192 (248)
......+.+.|+||++.+.+|+.++|||+||..||..|+.... ..||+||..+...++.++..+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~~~~~~ 75 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFPDNFAK 75 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGGGCEECHHHH
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC--CCCCCCccCcchhhhhhhHHHH
Confidence 3445677899999999999999999999999999999998642 3899999999887776654433
No 56
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.5e-11 Score=79.71 Aligned_cols=50 Identities=24% Similarity=0.632 Sum_probs=41.5
Q ss_pred CCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200 131 GQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 189 (248)
.+...|.||++...+++++||||. ||..|+.. ...||+||..|.. .+.+|
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~~--~~~i~ 63 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQE--SFALS 63 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCCC--EECCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchhc--eEEee
Confidence 445789999999999999999999 99999983 2389999999873 44444
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.6e-12 Score=86.94 Aligned_cols=46 Identities=33% Similarity=0.699 Sum_probs=39.6
Q ss_pred CCCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
..+...|+||++.+.+++.++|||. ||..|+... ..||+||..+..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-------SBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-------CCCccCCceecC
Confidence 3456789999999999999999999 999999642 389999999864
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.11 E-value=1.6e-11 Score=84.39 Aligned_cols=46 Identities=33% Similarity=0.688 Sum_probs=40.7
Q ss_pred CCCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
..+...|+||++.+.+++.++|||. ||..|+..| . .||+||+.+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~---~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D---KCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----S---BCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----c---cCCCcCcCccC
Confidence 3445789999999999999999999 999999988 2 89999999873
No 59
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.11 E-value=2.6e-11 Score=80.18 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=50.4
Q ss_pred ceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200 133 IYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG 190 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 190 (248)
.+.|+|+++.+.+||++ ++||+|++.||.+|++.+. +||+++.++..++++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~---~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG---NDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS---BCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC---CCcCCcCCCChhhcEECcc
Confidence 37899999999999999 9999999999999999765 7999999999999998764
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3.3e-11 Score=101.20 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=55.9
Q ss_pred CCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccc--cccccccCCceeeecCCCC
Q psy2200 129 DKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPV--CKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 129 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~~~~ 194 (248)
.....+.||||+++|.+||.. .|||+||+.||..|+.... ...||+ |++.+...++.++..+...
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~-~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT-TRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS-CEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC-CCCCCcccccCcCchhhCCcCHHHHHH
Confidence 345678999999999999985 9999999999999998642 468999 9999999999988776544
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.05 E-value=9.9e-11 Score=86.03 Aligned_cols=45 Identities=29% Similarity=0.787 Sum_probs=39.0
Q ss_pred eeecccccccCCc------------------EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 134 YDCNICLDTAKDA------------------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 134 ~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
..|+||++.+.++ +.++|||.||..||..|+..+. +||+||+.+.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~---~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS---BCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC---cCcCCCCcce
Confidence 5799999988754 4569999999999999999866 9999999864
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.02 E-value=1e-10 Score=103.83 Aligned_cols=52 Identities=38% Similarity=0.887 Sum_probs=44.7
Q ss_pred CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
....|+||++.+.+++.++|||.||..|+..|+... ...||+||..+....+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--GQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--CSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--CCCCCCCCCccCCcee
Confidence 346899999999999999999999999999999842 2399999999876543
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=8e-10 Score=76.99 Aligned_cols=50 Identities=26% Similarity=0.653 Sum_probs=41.4
Q ss_pred ceeecccccccC--CcEEccCC-----CccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 133 IYDCNICLDTAK--DAVISMCG-----HLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 133 ~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
...|.||++.+. ++++++|+ |.||..||.+|+.... ..+||+||..+..+
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-TRCCELCKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-CSBCSSSCCBCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-CCCCCCCCCeeecC
Confidence 458999998774 57888996 9999999999998753 35899999998643
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.87 E-value=6.2e-10 Score=77.40 Aligned_cols=51 Identities=31% Similarity=0.762 Sum_probs=42.5
Q ss_pred CCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200 131 GQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG 190 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 190 (248)
.+...|.||++.+.+++.++|||. ||..|+..| ..||+||..+.. .+.+|.
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~--~~~i~~ 67 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH--VQHVYL 67 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE--EEECBC
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC--eEEEEe
Confidence 344689999999999999999999 999999865 289999999874 455554
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.84 E-value=3.7e-10 Score=84.23 Aligned_cols=45 Identities=29% Similarity=0.787 Sum_probs=0.0
Q ss_pred eeecccccccCCc------------------EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 134 YDCNICLDTAKDA------------------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 134 ~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
..|+||++.+.++ +.++|||.||..||..|+..+. .||+||+.+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~---~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWE 111 (117)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC---cCCCCCCeee
Confidence 5899999988753 2248999999999999999866 9999999865
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.78 E-value=2.5e-09 Score=73.22 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCCCCCCCceeccccCCCCCCceEec-cCccc-ccceeccccCCCCCCCCCCCC
Q psy2200 26 DGGNDKSQIYDCNICFDTAKDAVISM-CGHLF-WLKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 26 ~~~~~~~~~~~C~iCld~~~~~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~~~~ 77 (248)
.+.++....+.|+||++.+.+||+++ |||.| ..|+..|+...+...+|....
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 60 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCC
Confidence 34555677899999999999999999 99999 557778876544456665433
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=1.8e-08 Score=68.80 Aligned_cols=49 Identities=22% Similarity=0.589 Sum_probs=40.3
Q ss_pred CceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 132 QIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
....|.||++.+.....- .|+|.|+..||.+|++.+. ..+||+||..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-SCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-CCCCCCCcCcCC
Confidence 345899999998765544 7999999999999998763 349999998765
No 68
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=9.5e-09 Score=67.88 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=32.2
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceecccc
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPG 65 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~ 65 (248)
.+.....+.|+||++.+.+|++++|||.| ..|+..|+.
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHH
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHH
Confidence 34566789999999999999999999999 557777865
No 69
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=8.4e-09 Score=66.80 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=32.2
Q ss_pred CCCCCCCceeccccCCCCCCceEeccCccc-ccceecccc
Q psy2200 27 GGNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPG 65 (248)
Q Consensus 27 ~~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~ 65 (248)
..+.....+.|+||++.+.+|++++|||+| ..|+..|+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH
Confidence 344556679999999999999999999999 557777754
No 70
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=68.37 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=33.7
Q ss_pred CCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200 31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPR 74 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~ 74 (248)
....++|+||++.+.+|+.++|||.| ..|+..|+... ..+|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~CP~ 54 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG--KRCAL 54 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS--SBCSS
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC--CcCcC
Confidence 35578999999999999999999999 56777887654 34444
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=4.1e-09 Score=92.82 Aligned_cols=45 Identities=31% Similarity=0.834 Sum_probs=40.5
Q ss_pred CCCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
..+...|+||++.+.+++.++|||. ||..|+..| . .||+||..+.
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~---~CP~CR~~i~ 337 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----R---KCPICRGIIK 337 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----S---BCTTTCCBCC
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----C---cCCCCCCCcc
Confidence 3456899999999999999999999 999999877 2 8999999986
No 72
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=4.5e-08 Score=66.44 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=37.6
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccC-CCCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR-GGSEIDPRDEV 77 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R-g~~~~~p~~~~ 77 (248)
.+.....+.|+||++.+.+|++++|||.| ..|+..|+.. +....+|....
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKT 65 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCC
Confidence 34556789999999999999999999999 5577778753 23355665433
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=4e-09 Score=75.60 Aligned_cols=54 Identities=24% Similarity=0.666 Sum_probs=41.8
Q ss_pred CceeecccccccCCcEEc---cCCCccCHhHHHHHHHhC---C--CCCcccc--cccc--cccCCc
Q psy2200 132 QIYDCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETC---P--NRQTCPV--CKAA--IDKDKV 185 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~---~--~~~~CP~--Cr~~--~~~~~~ 185 (248)
+.+.|+||++.+..++.+ +|||.||..|+..++... + ....||. |+.. +....+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 357899999998877544 799999999999998752 1 1358999 9988 654433
No 74
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=67.17 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=36.3
Q ss_pred CCCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 27 GGNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 27 ~~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
..+.....+.|+||++.+.+|+.++|||.| ..|+..|+.+ ....+|..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~C 56 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTAC 56 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTT
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCC
Confidence 344556789999999999999999999999 5577778742 23455544
No 75
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.62 E-value=8.9e-09 Score=73.31 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=40.2
Q ss_pred CCCCCCCceeccccCCCCCCceEec-cCccccc-ceeccccCCCCCCCCCCCCC
Q psy2200 27 GGNDKSQIYDCNICFDTAKDAVISM-CGHLFWL-KFFYWPGRGGSEIDPRDEVP 78 (248)
Q Consensus 27 ~~~~~~~~~~C~iCld~~~~~v~~~-CGH~f~~-cv~~~y~Rg~~~~~p~~~~p 78 (248)
+.+.....|.|+||++.+.+||+++ |||+||. |+..|+...+...+|....+
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCS
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCc
Confidence 3445677899999999999999999 9999954 77778765545677765443
No 76
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.58 E-value=4.7e-08 Score=70.65 Aligned_cols=47 Identities=15% Similarity=0.011 Sum_probs=36.6
Q ss_pred CCCCceeccccCCCCCCceEeccC-ccccc-ceeccccCCCCCCCCCCCCC
Q psy2200 30 DKSQIYDCNICFDTAKDAVISMCG-HLFWL-KFFYWPGRGGSEIDPRDEVP 78 (248)
Q Consensus 30 ~~~~~~~C~iCld~~~~~v~~~CG-H~f~~-cv~~~y~Rg~~~~~p~~~~p 78 (248)
+....|.|+||+++++|||+++|| |+|+. |+..|+.. ...+|.+..+
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~ 66 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSP 66 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSB
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCC
Confidence 456689999999999999999999 99954 66677654 3467765543
No 77
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.57 E-value=4e-08 Score=68.44 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=37.0
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCC----CCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRG----GSEIDPRDEV 77 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg----~~~~~p~~~~ 77 (248)
.++....+.|+||++.+.+|++++|||.| ..|+..|+... ....+|....
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCC
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCC
Confidence 34456679999999999999999999999 45676776542 2455665433
No 78
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2e-08 Score=69.78 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=35.8
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~ 76 (248)
.++....+.|+||++.+.+|++++|||.| ..|+..|+.. ...+|...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr 56 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICD 56 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSC
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcC
Confidence 34456679999999999999999999999 5577788754 23455443
No 79
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.55 E-value=4.5e-08 Score=67.44 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=36.7
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCC-----CCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRG-----GSEIDPRDE 76 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg-----~~~~~p~~~ 76 (248)
.+.....+.|+||++.+.+|++++|||.| ..|+..|+... ....+|...
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr 60 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCC
Confidence 34456689999999999999999999999 45677776542 234556543
No 80
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=8.7e-08 Score=66.70 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=36.5
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccC----CCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR----GGSEIDPRDE 76 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R----g~~~~~p~~~ 76 (248)
.++....+.|+||++.+.+|+.++|||.| ..|+..|+.. ++...+|...
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr 66 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCC
Confidence 34556679999999999999999999999 4566677554 2345566543
No 81
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.53 E-value=3.3e-08 Score=68.08 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=37.0
Q ss_pred CCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200 29 NDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~ 77 (248)
.+....|.|+||++++.+||+++|||+| ..|+..|+..+ ...+|....
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~-~~~CP~C~~ 51 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-HKTCPKSQE 51 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-CCBCTTTCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC-cCCCCCCcC
Confidence 3456789999999999999999999999 55777787642 455665443
No 82
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=5.6e-08 Score=65.96 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=36.5
Q ss_pred CCCCCCCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCC
Q psy2200 26 DGGNDKSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 26 ~~~~~~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.+.++....+.|+||++.+.+|+++ +|||.| ..|+..|+... ..+|..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~C 56 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS--NRCPKC 56 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC--SSCTTT
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC--CcCCCc
Confidence 3445567789999999999999997 999999 45777887542 345543
No 83
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.44 E-value=9e-08 Score=69.40 Aligned_cols=49 Identities=14% Similarity=0.031 Sum_probs=37.4
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEVP 78 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~p 78 (248)
..+....|.|+||++++.|||+++|||+|+. |+..|+.. ...||.+..+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~ 72 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQT 72 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCB
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCC
Confidence 3445678999999999999999999999944 56667653 3567765544
No 84
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.42 E-value=6.4e-08 Score=68.04 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=35.5
Q ss_pred CCCCceeccccCCCCCCceEeccCcccc-cceeccccCCCCCCCCCCCC
Q psy2200 30 DKSQIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 30 ~~~~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~Rg~~~~~p~~~~ 77 (248)
+....|.|+||+++++|||+++|||+|+ .|+..|+.. ...+|.+..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~ 56 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQ 56 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcC
Confidence 4566899999999999999999999994 466667653 345665543
No 85
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=6.3e-08 Score=64.78 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=33.9
Q ss_pred CCCCCceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 29 NDKSQIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 29 ~~~~~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
......+.|+||++.+.++ ++++|||.| ..|+..|+... ..+|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~C 62 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTC 62 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--SSCTTT
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--CCCCCC
Confidence 3345678999999999987 899999999 56777787642 345543
No 86
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=1.1e-07 Score=68.13 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCceeccccCCCCCCceEec-cCccccc-ceeccccCC----CCCCCCCC
Q psy2200 32 SQIYDCNICFDTAKDAVISM-CGHLFWL-KFFYWPGRG----GSEIDPRD 75 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~~~-CGH~f~~-cv~~~y~Rg----~~~~~p~~ 75 (248)
...|.|+||++++.+||+++ |||+|+. |+..|+..+ +...+|..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~t 54 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQI 54 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCST
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcC
Confidence 55799999999999999996 9999954 666776543 23566653
No 87
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.40 E-value=4.5e-07 Score=62.26 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCCCCceeccccCCCCCCc---eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDA---VISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~---v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.+.....++|+||++.+.++ ++++|||.| ..|+..|+.+. ..+|..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~C 58 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--DSCPVC 58 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--CSCTTT
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--CcCcCc
Confidence 33445678999999998765 557999999 66888887654 355543
No 88
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2.1e-07 Score=65.27 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCCCCCCceeccccCCCCCC----ceEeccCccc-ccceeccccCC-CCCCCCCCCC
Q psy2200 27 GGNDKSQIYDCNICFDTAKD----AVISMCGHLF-WLKFFYWPGRG-GSEIDPRDEV 77 (248)
Q Consensus 27 ~~~~~~~~~~C~iCld~~~~----~v~~~CGH~f-~~cv~~~y~Rg-~~~~~p~~~~ 77 (248)
..+.....++|+||++.+.+ |++++|||.| ..|+..|+... ....+|....
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 64 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCC
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCC
Confidence 34455667999999999999 9999999999 55777776543 2355665443
No 89
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.34 E-value=3.6e-07 Score=59.84 Aligned_cols=50 Identities=22% Similarity=0.599 Sum_probs=39.8
Q ss_pred CceeecccccccCCcEEccCC--C---ccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 132 QIYDCNICLDTAKDAVISMCG--H---LFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~Cg--H---~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
+...|.||++...++.++||. | .|+..|+.+|+.... ...||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-NTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-CSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-CCccCCCCCeeec
Confidence 345899999887777778865 4 799999999998643 4599999998753
No 90
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.32 E-value=8.6e-08 Score=73.88 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCCCceeccccCCCCCCceEeccCcccc-cceeccccC
Q psy2200 29 NDKSQIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGR 66 (248)
Q Consensus 29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~R 66 (248)
+.....|.|+||++++.+||.++|||.|| .|+..|+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS 64 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc
Confidence 45677899999999999999999999994 467777643
No 91
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.32 E-value=2.1e-07 Score=68.96 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200 31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~ 77 (248)
....|.|+||++.+.+||+++|||+| ..|+..|+..+ ...+|....
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~ 58 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA-SLCCPFCRR 58 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT-TSBCTTTCC
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC-cCCCCCCCc
Confidence 35579999999999999999999999 45677777543 355665443
No 92
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=5.5e-07 Score=60.49 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=30.8
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceecccc
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPG 65 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~ 65 (248)
.++....+.|+||++.+.+ ++++|||.| ..|+..|+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH
Confidence 3445667999999999999 999999999 557778866
No 93
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.26 E-value=8.4e-08 Score=69.46 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=35.5
Q ss_pred CCCceeccccCCCCCCceE-eccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200 31 KSQIYDCNICFDTAKDAVI-SMCGHLF-WLKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~-~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~ 77 (248)
....+.|+||++.+.+||. ++|||.| ..|+..|+.... ..+|....
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~ 66 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRA 66 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCC
Confidence 4456899999999999999 9999999 557777876542 45565443
No 94
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.24 E-value=2.3e-07 Score=71.12 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=33.2
Q ss_pred CceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~ 76 (248)
..+.|+||++.+.+||+++|||+| ..|+..|+.+. ..+|...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr 94 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK--IECPICR 94 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC--SBCTTTC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC--CcCCCCC
Confidence 357899999999999999999999 45777787654 3456543
No 95
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=4.3e-07 Score=77.11 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=36.9
Q ss_pred CCCCceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCCCC
Q psy2200 30 DKSQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEVPP 79 (248)
Q Consensus 30 ~~~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~p~ 79 (248)
+....|.|+||++++.+||+++|||+||. |+..|+..++ ..||.+..+-
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~ 253 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPL 253 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCC
Confidence 44668999999999999999999999955 5666765543 2377655443
No 96
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=3.8e-07 Score=58.73 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=26.3
Q ss_pred CCceeccccCCCCCCceEeccCccccc-ceec
Q psy2200 32 SQIYDCNICFDTAKDAVISMCGHLFWL-KFFY 62 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~ 62 (248)
...+.|+||++.+.+|++++|||+|+. |+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc
Confidence 456889999999999999999999954 5444
No 97
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.12 E-value=5.6e-07 Score=67.54 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=33.9
Q ss_pred CCceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCC
Q psy2200 32 SQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~ 77 (248)
...+.|+||++.+.+||+++|||.||. |+..|+.. ....+|....
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~ 95 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRY 95 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCC
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCc
Confidence 446899999999999999999999955 66677652 2345665433
No 98
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.12 E-value=5.2e-07 Score=72.05 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCCC
Q psy2200 29 NDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEVP 78 (248)
Q Consensus 29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~p 78 (248)
......|.|+||++++.|||+++|||+| -.|+..|+..++. .||.+..+
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~ 150 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSP 150 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCB
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCC
Confidence 3456789999999999999999999999 4466677655433 57765543
No 99
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.10 E-value=1.4e-06 Score=58.32 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=33.2
Q ss_pred CCCCCCceeccccCCCCC---CceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAK---DAVISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~---~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.++.....+|+||++.+. .+++++|||.| ..|+..|+.+.. .+|..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~C 57 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPIC 57 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS--BCTTT
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC--CCcCc
Confidence 334456789999998874 56889999999 667888876543 35543
No 100
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=1.2e-06 Score=64.29 Aligned_cols=45 Identities=22% Similarity=0.466 Sum_probs=34.5
Q ss_pred CceeccccCCCCCCceEeccCccc-ccceeccccCCC-CCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGG-SEIDPRDEV 77 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~-~~~~p~~~~ 77 (248)
..+.|+||++.+.+|++++|||.| ..|+..|+.... ...+|....
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 66 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCC
Confidence 468999999999999999999999 557777766432 346665543
No 101
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.08 E-value=8.4e-07 Score=77.05 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=39.2
Q ss_pred CCceeecccccccCC----cE----EccCCCccCHhHHHHHHHhCCC--------CCcccccccccc
Q psy2200 131 GQIYDCNICLDTAKD----AV----ISMCGHLFCWPCLHQWLETCPN--------RQTCPVCKAAID 181 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~----p~----~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~ 181 (248)
.....|+||++.+.+ |. ...|||.||..|+.+|++.... ...||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345789999998776 21 2379999999999999986321 137999999876
No 102
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.08 E-value=2.4e-06 Score=60.82 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=37.9
Q ss_pred eecccccccCC-cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 135 DCNICLDTAKD-AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 135 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
.|++|--.+.. ..++||+|+||..|+..|.+... ..||.|+.++..-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~--k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD--KMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC--CBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC--CCCcCcCCeeeee
Confidence 68888876653 46779999999999999987632 3999999998743
No 103
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.06 E-value=1.4e-06 Score=64.78 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200 31 KSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~~ 77 (248)
....+.|+||++.+.+||++ +|||.| ..|+..|+. ..+|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~ 63 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYT 63 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCC
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCC
Confidence 34569999999999999999 999999 456777765 45565443
No 104
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.05 E-value=2.4e-06 Score=58.94 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCCceeccccCCCC--CCceEec--cCccccc-ceeccccCCCCCCCCCC
Q psy2200 30 DKSQIYDCNICFDTA--KDAVISM--CGHLFWL-KFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 30 ~~~~~~~C~iCld~~--~~~v~~~--CGH~f~~-cv~~~y~Rg~~~~~p~~ 75 (248)
+....+.|+||+|.+ .++++.+ |||.||. |+..++.. ....+|..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~C 56 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPAC 56 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTT
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCC
Confidence 345678999999988 4567776 9999954 55554432 33556654
No 105
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=2.4e-06 Score=57.93 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=32.4
Q ss_pred CCCCCceeccccCCCCCCceE---eccCccc-ccceeccccCCCCCCCCCC
Q psy2200 29 NDKSQIYDCNICFDTAKDAVI---SMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 29 ~~~~~~~~C~iCld~~~~~v~---~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.+....++|+||++.+.++.. ++|||.| ..|+..|+.... .+|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~--~CP~C 58 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLC 58 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS--BCTTT
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC--cCCCc
Confidence 344557899999999876544 4999999 667888876543 45544
No 106
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.00 E-value=1.3e-06 Score=67.97 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=33.7
Q ss_pred CceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~ 77 (248)
..+.|+||++.+.+||+++|||+||. |+..|+..+ ...+|....
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~ 121 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-VFSCPACRH 121 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-CCBCTTTCC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-CCcCCCCCc
Confidence 45899999999999999999999954 677776642 345665443
No 107
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=4.6e-06 Score=55.89 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCceeccccCCCCCCceEeccCcc-cccc
Q psy2200 32 SQIYDCNICFDTAKDAVISMCGHL-FWLK 59 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~~~CGH~-f~~c 59 (248)
.....|.||+|...++|++||||+ ||.-
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~ 41 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDG 41 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTT
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHH
Confidence 456789999999999999999999 7443
No 108
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.98 E-value=9.8e-07 Score=59.26 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=32.9
Q ss_pred CCceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 32 SQIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
...++|+||++.+.++ +.++|||.| ..|+..|+.+. ..+|..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~C 57 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTC 57 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTT
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCC
Confidence 4578999999999988 899999999 55777887644 345543
No 109
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.98 E-value=1.5e-06 Score=63.59 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=34.3
Q ss_pred CCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCC
Q psy2200 31 KSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~ 76 (248)
....+.|+||++.+.+||++ +|||.| ..|+..|+... ..+|...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr 57 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS--KYCPICD 57 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC--SBCTTTC
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC--CcCcCCC
Confidence 35578999999999999998 999999 55777787654 4555543
No 110
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.96 E-value=2.3e-06 Score=54.43 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=31.1
Q ss_pred CceeccccCCCCCC----ceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKD----AVISMCGHLF-WLKFFYWPGRGGSEIDPR 74 (248)
Q Consensus 33 ~~~~C~iCld~~~~----~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~ 74 (248)
..++|+||++.+.+ +++++|||.| ..|+..|+... ..+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~ 48 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPL 48 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTT
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCC
Confidence 46889999999866 8899999999 66788887654 34443
No 111
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.96 E-value=1.1e-06 Score=62.43 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=33.8
Q ss_pred CCCCceeccccCCCCCC---ceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 30 DKSQIYDCNICFDTAKD---AVISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 30 ~~~~~~~C~iCld~~~~---~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.......|+||++.+.+ ++.++|||.| ..|+..|+.+. ..+|..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~C 83 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS--GTCPVC 83 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT--CBCTTT
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC--CcCcCc
Confidence 34567899999998877 8889999999 66888887654 355544
No 112
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.95 E-value=6.1e-06 Score=52.44 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=31.5
Q ss_pred CCceeccccCCCCCC---ceEec-cCccc-ccceeccccCCCCCCCCC
Q psy2200 32 SQIYDCNICFDTAKD---AVISM-CGHLF-WLKFFYWPGRGGSEIDPR 74 (248)
Q Consensus 32 ~~~~~C~iCld~~~~---~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~ 74 (248)
....+|+||++.+.+ ++.++ |||.| ..|+.+|+.+. ..+|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~ 48 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--STCPL 48 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC--CSCSS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC--CcCcC
Confidence 456789999999887 78887 99999 66788887653 34443
No 113
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.94 E-value=1.7e-06 Score=64.40 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=32.3
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR 66 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R 66 (248)
.+.....|.|+||++.+.+||.++|||+| ..|+..|+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 51 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD 51 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhh
Confidence 34567789999999999999999999999 4567777543
No 114
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.88 E-value=4.6e-06 Score=55.46 Aligned_cols=41 Identities=20% Similarity=0.420 Sum_probs=31.5
Q ss_pred CceeccccCCCCCCc-eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDA-VISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 33 ~~~~C~iCld~~~~~-v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
....|+||++.+.++ +.++|||.| ..|+..|+.+. ..+|..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~C 46 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLC 46 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTT
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc--CcCcCC
Confidence 356899999999996 789999999 56777887544 345543
No 115
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.88 E-value=1.8e-06 Score=57.02 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.0
Q ss_pred ceeccccCC-CCCCc----eEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200 34 IYDCNICFD-TAKDA----VISMCGHLF-WLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 34 ~~~C~iCld-~~~~~----v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~ 76 (248)
.+.|+||++ .+.+| ++++|||.| ..|+..|+.++ ...+|...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr 50 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECG 50 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCC
Confidence 578999999 88888 578999999 45777775543 34556543
No 116
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.87 E-value=3.3e-06 Score=60.67 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=34.3
Q ss_pred CCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200 31 KSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~~ 77 (248)
....+.|+||++.+.+|+++ +|||.| ..|+..|+.+. ..+|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~ 65 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCV 65 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCC
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC--CCCCCCCC
Confidence 34568999999999999998 899999 44777787643 45565443
No 117
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.86 E-value=1.6e-06 Score=56.90 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=31.2
Q ss_pred CceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPR 74 (248)
Q Consensus 33 ~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~ 74 (248)
..++|+||++.+.++ +.++|||.| ..|+..|+.+. ..+|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~ 49 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPT 49 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--SBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--CCCCC
Confidence 468999999999887 899999999 55777787652 34454
No 118
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.86 E-value=2.8e-06 Score=66.85 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=35.6
Q ss_pred CCCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200 30 DKSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDEV 77 (248)
Q Consensus 30 ~~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~~ 77 (248)
.....+.|+||++.+.+||++ +|||.| ..|+..|+..+ ...+|....
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~ 98 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-NKECPTCRK 98 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCC
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCC
Confidence 344568999999999999998 999999 45777787643 355665543
No 119
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=6.4e-07 Score=61.23 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=25.2
Q ss_pred CCCceeccccCCCCCCceEeccCcc-cccce
Q psy2200 31 KSQIYDCNICFDTAKDAVISMCGHL-FWLKF 60 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~~CGH~-f~~cv 60 (248)
....++|+||+|.+.+||+++|||. ||.-+
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C 52 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQC 52 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHH
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHH
Confidence 3456899999999999999999999 85433
No 120
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=6e-06 Score=56.13 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCCceeccccCCCCCCc---eEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200 31 KSQIYDCNICFDTAKDA---VISMCGHLF-WLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~---v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~ 76 (248)
.....+|+||++.+.++ +.++|||.| ..|+..|+.+. ..+|...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr 67 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--RTCPICR 67 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--SSCTTTC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--CcCcCcC
Confidence 34567999999998876 789999999 66888887654 3455443
No 121
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.78 E-value=3.5e-06 Score=62.32 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCceeccccCCCCCCceEeccCccc-ccceeccccC
Q psy2200 31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR 66 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R 66 (248)
....+.|+||++.+.+||.++|||.| ..|+..|+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH
Confidence 34568999999999999999999999 5577777654
No 122
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.76 E-value=5.9e-06 Score=56.22 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=26.9
Q ss_pred CCCceeccccCCCCCCceEeccCcc-cc-cceecc
Q psy2200 31 KSQIYDCNICFDTAKDAVISMCGHL-FW-LKFFYW 63 (248)
Q Consensus 31 ~~~~~~C~iCld~~~~~v~~~CGH~-f~-~cv~~~ 63 (248)
....+.|+||++.+.++|+++|||. || .|+..|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC
Confidence 3446899999999999999999999 84 455555
No 123
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.75 E-value=1.4e-05 Score=67.09 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCCCceeccccCCCCCCceEe-ccCccccc-ceeccccCCCCCCCCC
Q psy2200 30 DKSQIYDCNICFDTAKDAVIS-MCGHLFWL-KFFYWPGRGGSEIDPR 74 (248)
Q Consensus 30 ~~~~~~~C~iCld~~~~~v~~-~CGH~f~~-cv~~~y~Rg~~~~~p~ 74 (248)
.....|.|+||++.+.+||++ .|||+|+. |+..|+..++...||.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPv 223 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQ 223 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSG
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCc
Confidence 345679999999999999985 99999955 5555655444456675
No 124
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.69 E-value=7.2e-06 Score=64.80 Aligned_cols=47 Identities=28% Similarity=0.460 Sum_probs=35.9
Q ss_pred CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.+.....|.|+||++++.+||.++|||+| ..|+..|+..+. ..+|..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~C 59 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCPVD 59 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-SBCTTT
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-CCCCCC
Confidence 34567789999999999999999999999 456777765432 255544
No 125
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.66 E-value=1.4e-05 Score=58.79 Aligned_cols=42 Identities=31% Similarity=0.474 Sum_probs=31.0
Q ss_pred ceeccccCCCCCCce------------------EeccCccc-ccceeccccCC---CCCCCCCC
Q psy2200 34 IYDCNICFDTAKDAV------------------ISMCGHLF-WLKFFYWPGRG---GSEIDPRD 75 (248)
Q Consensus 34 ~~~C~iCld~~~~~v------------------~~~CGH~f-~~cv~~~y~Rg---~~~~~p~~ 75 (248)
..+|+||++.+.+++ .++|||.| ..|+..|+..+ ....+|..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~C 88 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC 88 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTT
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCC
Confidence 469999999997765 78999999 66888887432 23456654
No 126
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.52 E-value=1.2e-05 Score=52.69 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=32.3
Q ss_pred ceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCC
Q psy2200 34 IYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 34 ~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~ 76 (248)
.|.|+||+++..|||++ ++||+| -.++.+|+.+.+ .||.+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~ 45 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITN 45 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCc
Confidence 58999999999999999 999999 557778876543 366543
No 127
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.26 E-value=7e-05 Score=51.51 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=25.3
Q ss_pred CceeccccCCCCCCceEeccCcc-ccc-ceecc
Q psy2200 33 QIYDCNICFDTAKDAVISMCGHL-FWL-KFFYW 63 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~~CGH~-f~~-cv~~~ 63 (248)
....|.||+|.+.++|++||||. ||. |...+
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence 45689999999999999999999 744 54444
No 128
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.26 E-value=4.4e-05 Score=54.20 Aligned_cols=30 Identities=13% Similarity=0.373 Sum_probs=24.1
Q ss_pred CceeccccCCCCCCceEe---ccCcccccceec
Q psy2200 33 QIYDCNICFDTAKDAVIS---MCGHLFWLKFFY 62 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~---~CGH~f~~cv~~ 62 (248)
..|+|+||+|.+.+++.+ +|||.||.-++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~ 36 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLK 36 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHH
Confidence 478999999999988765 699999664444
No 129
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.26 E-value=4.8e-05 Score=49.95 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=29.7
Q ss_pred CCceeccccCCCCCCceEe--ccCcc-c-ccceeccccCCCCCCCCC
Q psy2200 32 SQIYDCNICFDTAKDAVIS--MCGHL-F-WLKFFYWPGRGGSEIDPR 74 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~~--~CGH~-f-~~cv~~~y~Rg~~~~~p~ 74 (248)
....+|.||+|...+++++ ||||+ | ..|...|..++ ..+|.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPi 49 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG--ASCPI 49 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT--CBCTT
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC--CcCCC
Confidence 4467899999999999888 99999 6 45665554332 34554
No 130
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.0003 Score=48.47 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=29.6
Q ss_pred ceeccccCCCCCC--------------ceEec-cCccc-ccceeccccCCCCCCCCCC
Q psy2200 34 IYDCNICFDTAKD--------------AVISM-CGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 34 ~~~C~iCld~~~~--------------~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.-.|+||++.+.+ +++++ |||.| ..|+.+|+.+.. .+|..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~C 70 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLC 70 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC--BCTTT
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC--CCCCc
Confidence 3559999998876 55655 99999 778889987653 55543
No 131
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.21 E-value=7.4e-05 Score=66.35 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=31.7
Q ss_pred CceeccccCCCCCCceEeccCcccc-cceeccccCCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~Rg~~~~~p~~ 75 (248)
...+|+||++.+.+|+.++|||.|| .|+..|... ....||.+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~C 373 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFC 373 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTT
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCC
Confidence 3479999999999999999999994 466677652 23455544
No 132
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.11 E-value=0.00012 Score=48.21 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=30.0
Q ss_pred CceeccccCCCCCCceEe--ccCcc-c-ccceeccccCCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDAVIS--MCGHL-F-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~--~CGH~-f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
+..+|.||+|...+++++ ||||. | ..|...|..++ ..+|..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiC 51 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN--KPCPVC 51 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT--CCCTTT
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC--CcCCCc
Confidence 456899999999999988 99999 4 45666665432 345543
No 133
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.03 E-value=0.00053 Score=57.10 Aligned_cols=49 Identities=22% Similarity=0.594 Sum_probs=40.3
Q ss_pred ceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
...|.||.+.......- .|+|.||..|+..|++.+. ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-SCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-CCCCCCCCCCCCC
Confidence 46899999998877666 4999999999999998653 4599999887543
No 134
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.88 E-value=0.00033 Score=61.47 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=26.5
Q ss_pred CCceeccccCCCCCCceEeccCcc-ccc-ceecc
Q psy2200 32 SQIYDCNICFDTAKDAVISMCGHL-FWL-KFFYW 63 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~~~CGH~-f~~-cv~~~ 63 (248)
...+.|+||+|.+.+||+++|||. ||. |+..|
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC
Confidence 345899999999999999999999 855 54444
No 135
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.74 E-value=0.00071 Score=66.15 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=58.2
Q ss_pred cCCCCceeecccccccCCcEEccCC-CccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCCC
Q psy2200 128 NDKGQIYDCNICLDTAKDAVISMCG-HLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSK 196 (248)
Q Consensus 128 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~ 196 (248)
.+..+.+.|||-.+.+.+||+++-| ++|-+..|.+|+..+. +||+-|.++...+++||+.++..+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~---tdP~Tr~~L~~~~liPN~~Lk~~I~ 952 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS---TDPFNRMPLKLEDVTPNEELRQKIL 952 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC---BCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC---CCCCCCCCCCcccccccHHHHHHHH
Confidence 3456779999999999999999998 5899999999998765 9999999999999999998776543
No 136
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.0018 Score=44.53 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=32.9
Q ss_pred ceeccccCCCC--CCceEeccC-----ccc-ccceeccccCCCCCCCCCCC
Q psy2200 34 IYDCNICFDTA--KDAVISMCG-----HLF-WLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 34 ~~~C~iCld~~--~~~v~~~CG-----H~f-~~cv~~~y~Rg~~~~~p~~~ 76 (248)
...|.||++-+ .+++++||. |.| -.|+.+|+.......+|...
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr 65 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCC
Confidence 45799999776 468899996 999 77888998765545666543
No 137
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.55 E-value=0.0007 Score=49.19 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=30.1
Q ss_pred ceeccccCCCCCCc------------------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 34 IYDCNICFDTAKDA------------------VISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 34 ~~~C~iCld~~~~~------------------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
.-.|+||++.+.++ +.++|||.| ..|+..|+.+. ..+|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~C 95 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLD 95 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--SBCSSS
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--CcCcCC
Confidence 35699999998865 558999999 77888897753 445543
No 138
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.36 E-value=0.0014 Score=46.78 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=27.0
Q ss_pred ceeecccccc-cCCcEE--ccCCCccCHhHHHHHH
Q psy2200 133 IYDCNICLDT-AKDAVI--SMCGHLFCWPCLHQWL 164 (248)
Q Consensus 133 ~~~C~IC~~~-~~~p~~--~~CgH~fC~~Ci~~~~ 164 (248)
.+.|+||.+. +.+++. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 3689999975 677887 8999999999999743
No 139
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.86 E-value=0.0014 Score=48.42 Aligned_cols=39 Identities=26% Similarity=0.571 Sum_probs=0.0
Q ss_pred eeccccCCCCCCc------------------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200 35 YDCNICFDTAKDA------------------VISMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 35 ~~C~iCld~~~~~------------------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
-.|+||++.+.++ +.++|||.| ..|+..|+.+. ..+|..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--~~CP~C 106 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLD 106 (117)
T ss_dssp ------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--CcCCCC
Confidence 4799999998763 225899999 77899998763 345543
No 140
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.014 Score=39.41 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=33.1
Q ss_pred CCceeccccCCCCCCceE-eccCccc-ccceeccccCCCCCCCCCC
Q psy2200 32 SQIYDCNICFDTAKDAVI-SMCGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~-~~CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
+..-+|.||.+.+..-+. ..|+|.| .-|+.+|+.......+|..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~C 58 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHC 58 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTT
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCC
Confidence 445789999999875443 3799999 8889999876544667754
No 141
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.70 E-value=0.12 Score=36.17 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=38.7
Q ss_pred CCCceeecccccccCCcEEccC-CCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMC-GHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
.-..+.|..|.-..+ -.+.| -|.+|..|+...+.... .||+|..++..+
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~Sd---rCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSN---RCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSS---EETTTTEECCCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhcc---CCcccCCcCCcc
Confidence 345578999986655 45556 49999999999998776 999999988754
No 142
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.68 E-value=0.022 Score=38.58 Aligned_cols=37 Identities=27% Similarity=0.722 Sum_probs=30.8
Q ss_pred CCceeecccccccCCcEEccC----CCccCHhHHHHHHHhC
Q psy2200 131 GQIYDCNICLDTAKDAVISMC----GHLFCWPCLHQWLETC 167 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~~C----gH~fC~~Ci~~~~~~~ 167 (248)
...+.|.+|.+.+.+.-...| +|.||..|-...++..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 345799999999998866666 7999999999998763
No 143
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.91 E-value=0.25 Score=43.31 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=40.7
Q ss_pred CceeecccccccCCcEEc-cCCCccCHh--HHHHHHHhCCCCCcccccccccccCCcee
Q psy2200 132 QIYDCNICLDTAKDAVIS-MCGHLFCWP--CLHQWLETCPNRQTCPVCKAAIDKDKVIP 187 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 187 (248)
-.+.||+-...+..|+.- .|.|.-|.+ -+....... ....||+|.+.+...+++.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~-~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI-PTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS-CCCBCTTTCCBCCGGGEEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC-CceeCCCCCcccCHHHeeE
Confidence 347899999999999876 799995544 444444443 3789999999887766553
No 144
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.19 E-value=0.32 Score=42.54 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=40.0
Q ss_pred ceeecccccccCCcEEc-cCCCc--cCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200 133 IYDCNICLDTAKDAVIS-MCGHL--FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~-~CgH~--fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 186 (248)
.+.||+-...+..|+.- .|.|. |-..-+.......+ ...||+|.+.+..++++
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~-~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKP-TWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSC-CCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCC-CeECCCCCcccCHHHeE
Confidence 46899999999999876 79999 44444555444443 78999999998766654
No 145
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=85.20 E-value=0.32 Score=34.13 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=23.0
Q ss_pred ceeccccCCC-CCCceE--eccCcccccceec
Q psy2200 34 IYDCNICFDT-AKDAVI--SMCGHLFWLKFFY 62 (248)
Q Consensus 34 ~~~C~iCld~-~~~~v~--~~CGH~f~~cv~~ 62 (248)
...|.||++. +.+||. +.|||.||.-++.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~ 34 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLK 34 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCH
Confidence 3679999964 788888 9999999665544
No 146
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=84.78 E-value=0.36 Score=42.02 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.4
Q ss_pred CCceeccccCCCCCC----ce----EeccCccc-ccceecccc
Q psy2200 32 SQIYDCNICFDTAKD----AV----ISMCGHLF-WLKFFYWPG 65 (248)
Q Consensus 32 ~~~~~C~iCld~~~~----~v----~~~CGH~f-~~cv~~~y~ 65 (248)
...-+|+||++.+.+ |. ...|||.| -.|+.+|+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLr 348 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFK 348 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHH
Confidence 457899999987665 21 24799999 889999964
No 147
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.95 E-value=1.5 Score=29.98 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCCceeecccccccCCcEEcc---CCCccCHhHHHHHH------------HhCC-CCCccccc
Q psy2200 130 KGQIYDCNICLDTAKDAVISM---CGHLFCWPCLHQWL------------ETCP-NRQTCPVC 176 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~---CgH~fC~~Ci~~~~------------~~~~-~~~~CP~C 176 (248)
...+..|.||...-. -.+++ |+-+|+..|+.+.- ..+. ....|+.|
T Consensus 12 ~~~D~~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C 73 (89)
T 1wil_A 12 VVNDEMCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 73 (89)
T ss_dssp CCCSCCCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred CCCCcccCccccccc-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence 345568999985433 34554 78999999999861 1111 25789999
No 148
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=81.79 E-value=0.95 Score=29.44 Aligned_cols=45 Identities=24% Similarity=0.648 Sum_probs=32.3
Q ss_pred eeecccccccCCcEEc--cCCCccCHhHHHHHHHhCC-CCCccccccccc
Q psy2200 134 YDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETCP-NRQTCPVCKAAI 180 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~ 180 (248)
..|.||.+.- .+++ .|...||..|+...+...+ +...|+.|....
T Consensus 13 ~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4699998642 2333 6889999999987765533 367999997643
No 149
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.59 E-value=2.6 Score=29.24 Aligned_cols=46 Identities=22% Similarity=0.549 Sum_probs=29.6
Q ss_pred CCceeecccccccCCcEEc---c--CC-CccCHhHHHHHHHh-CCCCCccccccccc
Q psy2200 131 GQIYDCNICLDTAKDAVIS---M--CG-HLFCWPCLHQWLET-CPNRQTCPVCKAAI 180 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~ 180 (248)
.+...| ||...... .++ . |. ..||..|+. +.. ..+...||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 445678 99986543 344 3 55 579999987 222 22467899997654
No 150
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=80.24 E-value=0.25 Score=31.56 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=28.9
Q ss_pred CceeccccCCCCCCceEeccCc-----cc-ccceeccccCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDAVISMCGH-----LF-WLKFFYWPGRGGSEIDPR 74 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~~CGH-----~f-~~cv~~~y~Rg~~~~~p~ 74 (248)
..-.|.||++-..++++.||.+ .| -.|+.+|+...+...++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~ 52 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQI 52 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTT
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCC
Confidence 3457999998877888899653 33 568888876433344444
No 151
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.20 E-value=0.53 Score=31.26 Aligned_cols=52 Identities=25% Similarity=0.584 Sum_probs=35.0
Q ss_pred CCceeecccccccCCcEEc---cCCCccCHhHHHHHHHhCC-CCCccccccccccc
Q psy2200 131 GQIYDCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCP-NRQTCPVCKAAIDK 182 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 182 (248)
.+...|.||........++ .|...|+..|+..-..... +...||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 4456799998765443333 5788899999875443221 35689999877654
No 152
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.76 E-value=0.91 Score=31.96 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=30.7
Q ss_pred CceeecccccccCCcEEc---cCCCccCHhHHHHHHHhCCCCCccccccc
Q psy2200 132 QIYDCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCPNRQTCPVCKA 178 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 178 (248)
+.+.| ||........++ .|.-.|+..|+..-...-+....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44678 888765554444 57778999998653333334679999964
No 153
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.05 E-value=6 Score=27.19 Aligned_cols=48 Identities=29% Similarity=0.641 Sum_probs=34.4
Q ss_pred eeecccccccC---Cc-EEc---cCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 134 YDCNICLDTAK---DA-VIS---MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 134 ~~C~IC~~~~~---~p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
..|.||-+..- +. +.. .|+--.|+.|+.-=.+. +...||.|+..+...
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke--G~q~CpqCktrYkr~ 71 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE--GTQNCPQCKTRYKRL 71 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT--SCSSCTTTCCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc--cCccccccCCccccc
Confidence 58999998643 11 222 58888999998755544 356999999988743
No 154
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=70.63 E-value=0.95 Score=31.98 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=24.1
Q ss_pred ccccCCC-CCCceEeccCcccccceeccccCCCCCCCCCCC
Q psy2200 37 CNICFDT-AKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDE 76 (248)
Q Consensus 37 C~iCld~-~~~~v~~~CGH~f~~cv~~~y~Rg~~~~~p~~~ 76 (248)
|.+|.=. ..-...+||.|.||.-++..+...+...+|+..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~ 44 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCS 44 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcC
Confidence 7778543 445678999999955444433333345555543
No 155
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=70.10 E-value=2.7 Score=27.67 Aligned_cols=48 Identities=23% Similarity=0.579 Sum_probs=30.3
Q ss_pred CCceeecccccccCCcEEc--c--CC-CccCHhHHHHHHHhC-CCCCcccccccccc
Q psy2200 131 GQIYDCNICLDTAKDAVIS--M--CG-HLFCWPCLHQWLETC-PNRQTCPVCKAAID 181 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~ 181 (248)
.+...| ||.......++. . |. ..||..|+. +... .+...||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 344678 898864443333 3 55 589999987 3322 24678999976543
No 156
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=67.32 E-value=0.82 Score=29.48 Aligned_cols=49 Identities=18% Similarity=0.462 Sum_probs=32.1
Q ss_pred ceeecccccccC---CcEEc--cCCCccCHhHHHHHHHh----CCCCCcccccccccc
Q psy2200 133 IYDCNICLDTAK---DAVIS--MCGHLFCWPCLHQWLET----CPNRQTCPVCKAAID 181 (248)
Q Consensus 133 ~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~~~~~~----~~~~~~CP~Cr~~~~ 181 (248)
...|.||..... +.+++ .|.-.|+..|+..-+.. ..+...|+.|.....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 358999997532 33333 68888999998753321 224678999976543
No 157
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.02 E-value=0.31 Score=33.75 Aligned_cols=50 Identities=14% Similarity=0.367 Sum_probs=34.7
Q ss_pred CceeecccccccC---CcEEc--cCCCccCHhHHHHHHH-----hCCCCCcccccccccc
Q psy2200 132 QIYDCNICLDTAK---DAVIS--MCGHLFCWPCLHQWLE-----TCPNRQTCPVCKAAID 181 (248)
Q Consensus 132 ~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~~~~~-----~~~~~~~CP~Cr~~~~ 181 (248)
....|.||...-. +.+++ .|...||..|+..-+. ...+...|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3468999997643 34444 6888999999876543 2234679999976553
No 158
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.94 E-value=3.8 Score=30.83 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=31.8
Q ss_pred ceeecccccccCCcEEc--cCCCccCHhHHHHHHH--------hCCCCCcccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLE--------TCPNRQTCPVCKAA 179 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~ 179 (248)
...|.+|.+--. ++. .|-.+||..||..-+. ...+...||.|+..
T Consensus 63 ~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 358999987433 222 6888999999997653 23357899999743
No 159
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=66.93 E-value=2.2 Score=30.93 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=37.5
Q ss_pred ceeecccccccC---CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCC
Q psy2200 133 IYDCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184 (248)
Q Consensus 133 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 184 (248)
-+.|..|...+. ......=|..||..|..+.+.... .|-.|...|....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~---~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG---AGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC---SSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC---ccccCCCCcCchh
Confidence 368999998886 235556788999999988776544 7999999887543
No 160
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=66.27 E-value=14 Score=24.72 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=31.6
Q ss_pred CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCC
Q psy2200 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 184 (248)
....|..|.+.+...++..-+..|+..|. .|-.|+..|....
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECF-----------VCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTC-----------CCSSSCCCTTTSC
T ss_pred cCCCcccCCCEecccEEEECCceECccCC-----------EecCCCCCCCCCC
Confidence 34579999988777666677888888884 7888988886543
No 161
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=63.67 E-value=3.6 Score=26.05 Aligned_cols=45 Identities=22% Similarity=0.599 Sum_probs=30.8
Q ss_pred ceeecccccccCCcEEc--cCCCccCHhHHHHHHHhC-CCCCcccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETC-PNRQTCPVCKAA 179 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 179 (248)
...|.||.+. ..+++ .|-..||..|+..-+... .+...||.|...
T Consensus 11 ~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4579999874 22333 677889999998754332 246789999753
No 162
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=61.71 E-value=4.9 Score=27.15 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=22.3
Q ss_pred CceeecccccccCCc----EEccCCCccCHhHHHH
Q psy2200 132 QIYDCNICLDTAKDA----VISMCGHLFCWPCLHQ 162 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 162 (248)
+...|.+|...|.-- ---.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345899999877522 2236999999999654
No 163
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.64 E-value=11 Score=25.32 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=30.5
Q ss_pred ceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
...|..|...+...++..-|..||..|. .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEF-----------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTC-----------BCSSSCCBCSSS
T ss_pred CCCCccCCCEecceEEEECCccccccCC-----------ccCCCCCCCCCC
Confidence 3578888888777677777888888874 788888888643
No 164
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.03 E-value=6.6 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=29.4
Q ss_pred ceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
...|..|.+.+...++..-+..|+..|. .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY-----------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT-----------SCSSSCCCHHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC-----------eeCCCCCCCCC
Confidence 3579999887776666677888888874 78888887753
No 165
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=60.83 E-value=1.2 Score=29.10 Aligned_cols=47 Identities=15% Similarity=0.446 Sum_probs=28.6
Q ss_pred CCceeecccccccCCcEEc---cCCCccCHhHHHHHHHhCCCCCccccccc
Q psy2200 131 GQIYDCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCPNRQTCPVCKA 178 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 178 (248)
.+...| ||........++ .|..-|+..|+..-.........||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445678 898766544444 46777888887543222223567888864
No 166
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.76 E-value=3.5 Score=28.28 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=34.3
Q ss_pred Cceeeccccccc--CCcEEc---cCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200 132 QIYDCNICLDTA--KDAVIS---MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185 (248)
Q Consensus 132 ~~~~C~IC~~~~--~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 185 (248)
....|.||.+.- ....++ .|.-.|+..|+..-... .+...||.|........+
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP-~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP-EGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCC-SSCCCCHHHHHHTTSCC-
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccC-CCceECccccCccchhhh
Confidence 446899999754 222333 67788999998754322 246789999876554443
No 167
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.68 E-value=0.63 Score=29.71 Aligned_cols=33 Identities=30% Similarity=0.850 Sum_probs=21.0
Q ss_pred eeecccccccCCc-----EEcc---CCCccCHhHHHHHHHh
Q psy2200 134 YDCNICLDTAKDA-----VISM---CGHLFCWPCLHQWLET 166 (248)
Q Consensus 134 ~~C~IC~~~~~~p-----~~~~---CgH~fC~~Ci~~~~~~ 166 (248)
-.||-|...+... +.-. |++.||+.|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3677777655432 2222 8888888888777654
No 168
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=60.45 E-value=5.3 Score=25.28 Aligned_cols=39 Identities=28% Similarity=0.741 Sum_probs=27.1
Q ss_pred eecccccccCCcEEc---cCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200 135 DCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCPNRQTCPVC 176 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 176 (248)
.|--|...+.+.... .|++.||.+|= .++... .-.||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~--Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDS--LHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTT--SCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchh-HHHHhh--ccCCcCC
Confidence 588888888654422 68999999994 344332 3489987
No 169
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=59.99 E-value=3.9 Score=28.67 Aligned_cols=13 Identities=38% Similarity=1.078 Sum_probs=11.6
Q ss_pred ccCHhHHHHHHHh
Q psy2200 154 LFCWPCLHQWLET 166 (248)
Q Consensus 154 ~fC~~Ci~~~~~~ 166 (248)
.||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999976
No 170
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.93 E-value=3.4 Score=27.83 Aligned_cols=30 Identities=27% Similarity=0.646 Sum_probs=21.5
Q ss_pred ceeecccccccCCc----EEccCCCccCHhHHHH
Q psy2200 133 IYDCNICLDTAKDA----VISMCGHLFCWPCLHQ 162 (248)
Q Consensus 133 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 162 (248)
...|.+|...|.-- ---.||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 35799999877522 2236999999999643
No 171
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.63 E-value=1.1 Score=31.15 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=31.6
Q ss_pred CCceeecccccccCC-cEEc--cCCCccCHhHHHHHHHhC-CCCCcccccccc
Q psy2200 131 GQIYDCNICLDTAKD-AVIS--MCGHLFCWPCLHQWLETC-PNRQTCPVCKAA 179 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 179 (248)
.+...|.||...-.. .+++ .|...||..|+..-+... .+...||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 344679999875432 2333 688889999986433322 235689999765
No 172
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=59.59 E-value=3.2 Score=40.80 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=36.2
Q ss_pred CCCCCceeccccCCCCCCceEeccC-ccc-ccceeccccCCCCCCCCCCCCC
Q psy2200 29 NDKSQIYDCNICFDTAKDAVISMCG-HLF-WLKFFYWPGRGGSEIDPRDEVP 78 (248)
Q Consensus 29 ~~~~~~~~C~iCld~~~~~v~~~CG-H~f-~~cv~~~y~Rg~~~~~p~~~~p 78 (248)
.+..+.|.|+|=+++.+|||+++-| ++| -..+..|+.+ ...||.+..+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~ 935 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMP 935 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCB
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCC
Confidence 3556789999999999999999998 578 5567778765 3466655443
No 173
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=59.54 E-value=4 Score=28.55 Aligned_cols=13 Identities=46% Similarity=1.135 Sum_probs=11.5
Q ss_pred ccCHhHHHHHHHh
Q psy2200 154 LFCWPCLHQWLET 166 (248)
Q Consensus 154 ~fC~~Ci~~~~~~ 166 (248)
.||+.|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 174
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=58.86 E-value=8.4 Score=29.37 Aligned_cols=47 Identities=17% Similarity=0.418 Sum_probs=33.4
Q ss_pred CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
+-+.|..|...+.......=|..||..|..+.... .|..|...|...
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~-----~C~~C~~~I~~~ 78 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGT-----KCAACQLGIPPT 78 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSC-----BCTTTCCBCCTT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccccc-----cccccccccCCC
Confidence 44788888887765444556788999998776542 788888777654
No 175
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.95 E-value=3.4 Score=28.00 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=20.6
Q ss_pred ceeecccccccCCc----EEccCCCccCHhHHH
Q psy2200 133 IYDCNICLDTAKDA----VISMCGHLFCWPCLH 161 (248)
Q Consensus 133 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~ 161 (248)
...|.+|...|.-- ---.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 35799999877422 223699999999943
No 176
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.59 E-value=9 Score=28.29 Aligned_cols=44 Identities=25% Similarity=0.665 Sum_probs=30.0
Q ss_pred eeecccccccCCcEEc--cCCCccCHhHHHHH-----H-Hh--CCCCCcccccccc
Q psy2200 134 YDCNICLDTAKDAVIS--MCGHLFCWPCLHQW-----L-ET--CPNRQTCPVCKAA 179 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~-----~-~~--~~~~~~CP~Cr~~ 179 (248)
..|.||.+--. ++. .|-..||..||.+- + +. ..+...|+.|+-.
T Consensus 58 ~~C~vC~dGG~--LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 58 EQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSCTTTCCCSE--EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CcCeecCCCCe--eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 46999987422 222 68889999999975 2 21 2347899999653
No 177
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=57.00 E-value=4.2 Score=27.97 Aligned_cols=48 Identities=19% Similarity=0.541 Sum_probs=31.7
Q ss_pred CCCceeecccccccCCcEEc--cCCCccCHhHHHHHHHhCC-CCCcccccccc
Q psy2200 130 KGQIYDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETCP-NRQTCPVCKAA 179 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~ 179 (248)
......|.||.+.- .+++ .|--.|+..|+..-+...+ +...||.|+..
T Consensus 22 d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34446899999753 2222 5777899999876554322 36789999753
No 178
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.93 E-value=4.2 Score=26.86 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=30.1
Q ss_pred ceeecccccccCCcEEc---cCCCccCHhHHHHHHHh------CCCCCccccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS---MCGHLFCWPCLHQWLET------CPNRQTCPVCKAAI 180 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~ 180 (248)
...| ||........++ .|..-||..|+.--... ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4677 898876543444 57778999998532211 12356899997643
No 179
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.18 E-value=3 Score=25.22 Aligned_cols=44 Identities=30% Similarity=0.735 Sum_probs=26.8
Q ss_pred eecccccccCCc-EEc--cCCCccCHhHHHHHHHhCC-CCCccccccc
Q psy2200 135 DCNICLDTAKDA-VIS--MCGHLFCWPCLHQWLETCP-NRQTCPVCKA 178 (248)
Q Consensus 135 ~C~IC~~~~~~p-~~~--~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~ 178 (248)
.|.||...-... +++ .|...|+..|+..-+...+ +...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 467777543222 222 5778899999865443322 3567999964
No 180
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=56.07 E-value=2.2 Score=27.09 Aligned_cols=46 Identities=22% Similarity=0.542 Sum_probs=29.6
Q ss_pred ceeecccccccCCcEEc--cCCCccCHhHHHHHHHhC-CCCCccccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETC-PNRQTCPVCKAAI 180 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~ 180 (248)
...|.||.+.- .+++ .|...||..|+..-+... .+...||.|+...
T Consensus 9 ~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45799998632 1222 577889999987544332 2356899997653
No 181
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.86 E-value=3.5 Score=30.28 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=20.6
Q ss_pred eeecccccccCCc----EEccCCCccCHhHHH
Q psy2200 134 YDCNICLDTAKDA----VISMCGHLFCWPCLH 161 (248)
Q Consensus 134 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~ 161 (248)
..|.+|...|.-- .--.||++||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 4799999877522 223699999999954
No 182
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=55.65 E-value=7.9 Score=27.82 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=35.7
Q ss_pred CceeecccccccCC-cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 132 QIYDCNICLDTAKD-AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 132 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
+-+.|..|...+.. .....=|..||..|..+... . .|..|...|...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~--~---~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA--V---VCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC--C---BCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC--c---cCcccCCcCCcC
Confidence 34789999988875 34456788999999876543 2 899999999853
No 183
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=55.39 E-value=5.3 Score=27.07 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=24.6
Q ss_pred eecccccccC-----CcEEcc-CCCccCHhHHHHHHHhCCCCCcccc
Q psy2200 135 DCNICLDTAK-----DAVISM-CGHLFCWPCLHQWLETCPNRQTCPV 175 (248)
Q Consensus 135 ~C~IC~~~~~-----~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~ 175 (248)
-||-|...+. ..+.-+ ||+.||..|-..|-+.|. ..+|..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~-~~sC~~ 72 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHR-GRSCED 72 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTT-TSCHHH
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCC-CCChHH
Confidence 4776655332 235554 999999999888733333 235654
No 184
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=55.07 E-value=5 Score=32.84 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=31.4
Q ss_pred CceeccccCCCCCCceEec-cCccc-ccceeccccCCCCCCCCCC
Q psy2200 33 QIYDCNICFDTAKDAVISM-CGHLF-WLKFFYWPGRGGSEIDPRD 75 (248)
Q Consensus 33 ~~~~C~iCld~~~~~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~~ 75 (248)
...+|.||.++...-+.-+ |+|.| ..|+..|+.......+|..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C 223 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHC 223 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTT
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCC
Confidence 3678999999988665544 99999 7778788765545566654
No 185
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=52.40 E-value=4.9 Score=27.50 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=29.0
Q ss_pred eeecccccccCCc----EEccCCCccCHhHHHHHHHhC----CCCCcccccccccc
Q psy2200 134 YDCNICLDTAKDA----VISMCGHLFCWPCLHQWLETC----PNRQTCPVCKAAID 181 (248)
Q Consensus 134 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr~~~~ 181 (248)
..|.+|...|.-- ---.||++||..|....+... ...+.|-.|...+.
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 4799999876522 223699999999965422100 01345666655544
No 186
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=52.36 E-value=4.8 Score=26.44 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=19.9
Q ss_pred eecccccccCCc----EEccCCCccCHhHHH
Q psy2200 135 DCNICLDTAKDA----VISMCGHLFCWPCLH 161 (248)
Q Consensus 135 ~C~IC~~~~~~p----~~~~CgH~fC~~Ci~ 161 (248)
.|.+|...|.-- ---.||++||..|..
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccC
Confidence 799999876522 223699999999953
No 187
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=52.31 E-value=9.5 Score=25.68 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=22.9
Q ss_pred CCceeccccCCCCCCceEecc----Cccc-ccce
Q psy2200 32 SQIYDCNICFDTAKDAVISMC----GHLF-WLKF 60 (248)
Q Consensus 32 ~~~~~C~iCld~~~~~v~~~C----GH~f-~~cv 60 (248)
.....|.+|.+.+.|--+..| +|-| |.|-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 567899999999999877777 6777 4443
No 188
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.38 E-value=7.8 Score=25.02 Aligned_cols=30 Identities=30% Similarity=0.718 Sum_probs=21.5
Q ss_pred CceeecccccccCCcEEccC-CCccCHhHHHH
Q psy2200 132 QIYDCNICLDTAKDAVISMC-GHLFCWPCLHQ 162 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~ 162 (248)
+..-|.||.+... -.-+.| |-+||..|...
T Consensus 7 e~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNEDAT-LRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSCCC-EEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCCCe-EEecCCCCceehHHHHHH
Confidence 3457999999833 234478 78899999654
No 189
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=51.37 E-value=5 Score=21.36 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=11.5
Q ss_pred CceeccccCCCCCCc
Q psy2200 33 QIYDCNICFDTAKDA 47 (248)
Q Consensus 33 ~~~~C~iCld~~~~~ 47 (248)
+.|.|+||.-.+-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 579999998766553
No 190
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.53 E-value=4.9 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=21.7
Q ss_pred eeecccccccCC----cEEccCCCccCHhHHHHH
Q psy2200 134 YDCNICLDTAKD----AVISMCGHLFCWPCLHQW 163 (248)
Q Consensus 134 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~ 163 (248)
..|.+|...|.- -.-..||++||..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 479999987652 123379999999996543
No 191
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=50.34 E-value=9.7 Score=27.48 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=37.2
Q ss_pred CceeecccccccC---CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 132 QIYDCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 132 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
+-+.|..|...+. ......=|..||..|..+...... .|..|...|...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~---~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDG---LCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCE---ECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCcc---ChhhcCCccCcc
Confidence 4478999998885 345666788999999888765433 799999988653
No 192
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.96 E-value=14 Score=24.15 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=28.8
Q ss_pred ceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
...|.-|...+...++..-|..|+..|. .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHF-----------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTS-----------BCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCCC-----------EeCCCCCccCCC
Confidence 3578888887776565566777777773 788888887744
No 193
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=48.68 E-value=1.2 Score=30.01 Aligned_cols=16 Identities=38% Similarity=0.939 Sum_probs=13.3
Q ss_pred cCCCccCHhHHHHHHH
Q psy2200 150 MCGHLFCWPCLHQWLE 165 (248)
Q Consensus 150 ~CgH~fC~~Ci~~~~~ 165 (248)
.|||.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5999999999877644
No 194
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=46.80 E-value=8.2 Score=29.84 Aligned_cols=47 Identities=15% Similarity=0.400 Sum_probs=33.2
Q ss_pred CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
.-+.|..|...+.......=|..||..|..+.+. ..|..|...|...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----TKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS-----CCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccccc-----cccccCCCccCCC
Confidence 3467888888776543445577899999766442 2899999888654
No 195
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.66 E-value=5.3 Score=22.30 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=10.5
Q ss_pred ceeccccCCCCCCc
Q psy2200 34 IYDCNICFDTAKDA 47 (248)
Q Consensus 34 ~~~C~iCld~~~~~ 47 (248)
-|-||||+..+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 39999998766543
No 196
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=46.23 E-value=6.5 Score=30.63 Aligned_cols=48 Identities=17% Similarity=0.450 Sum_probs=33.7
Q ss_pred CceeecccccccCC---cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 132 QIYDCNICLDTAKD---AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 132 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
+-+.|..|...+.. .....=|..||..|..+.+.... .|..|...|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~---~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG---ACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCE---ECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCC---ccccCCCcccc
Confidence 34778888887763 45556678899999877654322 58888887764
No 197
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.08 E-value=3 Score=26.38 Aligned_cols=43 Identities=23% Similarity=0.601 Sum_probs=27.2
Q ss_pred CceeecccccccCCcEEc---c--CC-CccCHhHHHHHHHhC-CCCCccccccc
Q psy2200 132 QIYDCNICLDTAKDAVIS---M--CG-HLFCWPCLHQWLETC-PNRQTCPVCKA 178 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~~~-~~~~~CP~Cr~ 178 (248)
+...| ||...... .++ . |. ..||..|+. +... .+...||.|+.
T Consensus 9 e~~~C-~C~~~~~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 89886443 444 3 44 579999987 3322 24678998864
No 198
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=45.56 E-value=4.4 Score=35.80 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=0.0
Q ss_pred ceeecccccccCCc----EEccCCCccCHhHHHHHHHhC----CCCCccccccccc
Q psy2200 133 IYDCNICLDTAKDA----VISMCGHLFCWPCLHQWLETC----PNRQTCPVCKAAI 180 (248)
Q Consensus 133 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr~~~ 180 (248)
...|.+|...|.-- .-..||++||..|....+... ...+.|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45799999876521 223699999999987654211 1145677775544
No 199
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=44.69 E-value=4.2 Score=26.68 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=30.4
Q ss_pred Cceeeccccccc---CCcEEc--cCCCccCHhHHHHHHHhCCCCCcccccccc
Q psy2200 132 QIYDCNICLDTA---KDAVIS--MCGHLFCWPCLHQWLETCPNRQTCPVCKAA 179 (248)
Q Consensus 132 ~~~~C~IC~~~~---~~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 179 (248)
....|.||.+.- .+.+++ .|.-.|+..|+..-.. ..+...|+.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~v-P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI-PEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSC-CSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcC-CCCCcCCccCcCc
Confidence 346799998753 233444 6888899999864322 2236789888654
No 200
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=44.43 E-value=3.4 Score=26.06 Aligned_cols=43 Identities=23% Similarity=0.587 Sum_probs=27.4
Q ss_pred CceeecccccccCCcEEc---c--CC-CccCHhHHHHHHHhC-CCCCccccccc
Q psy2200 132 QIYDCNICLDTAKDAVIS---M--CG-HLFCWPCLHQWLETC-PNRQTCPVCKA 178 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~~~-~~~~~CP~Cr~ 178 (248)
+...| ||.+.... .++ . |. ..||..|+. +... .+...||.|+.
T Consensus 8 e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34577 89886443 344 3 55 589999987 2222 24678998864
No 201
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.20 E-value=51 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=20.0
Q ss_pred CceeecccccccCC-cEEccCCCccCHhH
Q psy2200 132 QIYDCNICLDTAKD-AVISMCGHLFCWPC 159 (248)
Q Consensus 132 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~C 159 (248)
....|..|...+.- +..-.||.+||..=
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred cCccchhhcCcccccceEeccCCEecccc
Confidence 34689999865432 46668999999764
No 202
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.77 E-value=2.2 Score=26.49 Aligned_cols=44 Identities=25% Similarity=0.656 Sum_probs=27.1
Q ss_pred ceeecccccccCCcEEc--cCCCccCHhHHHHHHHhCC-CCCccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETCP-NRQTCPVCKA 178 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~ 178 (248)
...|.||.+.- .+++ .|...||..|+..-+...+ +...||.|..
T Consensus 9 ~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCCC--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 35799998742 2232 6777888888875433222 3557887753
No 203
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.46 E-value=45 Score=20.76 Aligned_cols=14 Identities=14% Similarity=0.605 Sum_probs=10.5
Q ss_pred CCCCCceeccccCC
Q psy2200 29 NDKSQIYDCNICFD 42 (248)
Q Consensus 29 ~~~~~~~~C~iCld 42 (248)
......|+|.+|+-
T Consensus 26 K~~~GsWeC~~C~V 39 (57)
T 2ebv_A 26 KRPIGSWECSVCCV 39 (57)
T ss_dssp CCCSSSCCCSSSCC
T ss_pred CCCCCeeeCCeeEc
Confidence 34567899999973
No 204
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.35 E-value=16 Score=22.71 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=27.0
Q ss_pred eeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
..|..|...+...++..-|..|+..|. .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF-----------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC-----------BCTTTCCBCSS
T ss_pred CCCcccCCEecceEEEECccccccCcC-----------EECCCCCCCCC
Confidence 468888877766666666777777773 68888877764
No 205
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=41.44 E-value=47 Score=21.87 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=19.2
Q ss_pred ceeecccccccC-CcEEccCCCccCHhH
Q psy2200 133 IYDCNICLDTAK-DAVISMCGHLFCWPC 159 (248)
Q Consensus 133 ~~~C~IC~~~~~-~p~~~~CgH~fC~~C 159 (248)
...|..|...+. .+..-.||..||..=
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSS
T ss_pred CCcChhhCCcccccCeecCCCCEechhc
Confidence 358999987533 356667999998754
No 206
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.37 E-value=65 Score=21.79 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=20.9
Q ss_pred ceeecccccccC--CcEEccCCCccCHhH
Q psy2200 133 IYDCNICLDTAK--DAVISMCGHLFCWPC 159 (248)
Q Consensus 133 ~~~C~IC~~~~~--~p~~~~CgH~fC~~C 159 (248)
...|..|...+. .+..-.||..||..=
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASH 53 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTT
T ss_pred CccchhhCCeecccCCeEcCCCCEecccC
Confidence 358999997554 377778999999764
No 207
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.10 E-value=12 Score=23.63 Aligned_cols=37 Identities=19% Similarity=0.535 Sum_probs=20.5
Q ss_pred eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.|..|.+.+...++..-|..|+..|. .|-.|+..|..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 43 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPECF-----------RCDLCQEVLAD 43 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTTS-----------BCSSSCCBCSS
T ss_pred cCccCCCEecceEEEECcccccccCC-----------EeCCCCCcCCC
Confidence 56666665554444445555555553 56666666554
No 208
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.47 E-value=9 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.461 Sum_probs=33.0
Q ss_pred CceeecccccccCCc-EEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 132 QIYDCNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.-+.|..|...+... ....=|..||..|..+.. ...|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~-----~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED-----SPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC-----CCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc-----CCccccCCCcccc
Confidence 347889998887643 444568889999975432 2389999998874
No 209
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=39.21 E-value=2.3 Score=26.83 Aligned_cols=46 Identities=22% Similarity=0.575 Sum_probs=28.2
Q ss_pred eeecccccccCCcEEc--cCCCccCHhHHHHHHHhC-CCCCcccccccccc
Q psy2200 134 YDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETC-PNRQTCPVCKAAID 181 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~ 181 (248)
..|.||...- .+++ .|...|+..|+..-+... .+...||.|.....
T Consensus 6 ~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 6 DFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp SSCTTTCCCS--SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCcCCCCCC--cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 4688888642 2222 577788888887533322 23567888866543
No 210
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.09 E-value=7 Score=31.37 Aligned_cols=28 Identities=25% Similarity=0.537 Sum_probs=20.6
Q ss_pred eeecccccccCCc----EEccCCCccCHhHHH
Q psy2200 134 YDCNICLDTAKDA----VISMCGHLFCWPCLH 161 (248)
Q Consensus 134 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~ 161 (248)
..|.+|...|.-- ---.||++||..|..
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 5899999877521 223699999999954
No 211
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.90 E-value=5.1 Score=25.37 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=29.6
Q ss_pred CceeecccccccC-CcEEc---cCCCccCHhHHHHHHHh--CCCCCcccccccc
Q psy2200 132 QIYDCNICLDTAK-DAVIS---MCGHLFCWPCLHQWLET--CPNRQTCPVCKAA 179 (248)
Q Consensus 132 ~~~~C~IC~~~~~-~p~~~---~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~ 179 (248)
+...|+||..... ...++ .|..-||..|+..-... ......||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3467999988764 23333 56777888887543221 1135689988754
No 212
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.42 E-value=20 Score=22.55 Aligned_cols=36 Identities=14% Similarity=0.507 Sum_probs=20.8
Q ss_pred eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
.|..|...+....+..-|..|+..|. .|-.|+..|.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 42 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQPWHKECF-----------VCTACRKQLS 42 (70)
T ss_dssp BCSSSCCBCCSSEEESSSSEEETTTS-----------BCSSSCCBCT
T ss_pred CCcccCCeeccceEEECccccCCCCC-----------ccCCCCCcCC
Confidence 56666665554444455556665553 5666666654
No 213
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=36.51 E-value=32 Score=22.62 Aligned_cols=30 Identities=27% Similarity=0.600 Sum_probs=22.2
Q ss_pred ceeeccccccc-CCc--EEccCCCccCHhHHHH
Q psy2200 133 IYDCNICLDTA-KDA--VISMCGHLFCWPCLHQ 162 (248)
Q Consensus 133 ~~~C~IC~~~~-~~p--~~~~CgH~fC~~Ci~~ 162 (248)
.+.|.+|.+.. ... .-+.|.-.||..|+..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 47899998754 333 4558899999999875
No 214
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.51 E-value=9.2 Score=30.92 Aligned_cols=29 Identities=24% Similarity=0.603 Sum_probs=21.2
Q ss_pred eeecccccccCCc----EEccCCCccCHhHHHH
Q psy2200 134 YDCNICLDTAKDA----VISMCGHLFCWPCLHQ 162 (248)
Q Consensus 134 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 162 (248)
..|.+|...|.-- .--.||++||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4899999876521 2337999999999653
No 215
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=36.26 E-value=1.1e+02 Score=21.49 Aligned_cols=45 Identities=11% Similarity=0.317 Sum_probs=32.6
Q ss_pred CceeecccccccC--CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 132 QIYDCNICLDTAK--DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 132 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
.-+.|..|...+. +.....=|..||..|....+.. .|..+.....
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~-----~~~~~~~~~~ 81 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI-----NGGSGGSGGS 81 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH-----HTCCCCCCSC
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc-----ccCCCCCCCc
Confidence 4578999998884 3355567889999999888765 5666655443
No 216
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.86 E-value=28 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.557 Sum_probs=22.2
Q ss_pred eecccccccC--CcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 135 DCNICLDTAK--DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 135 ~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.|..|...+. +.++..-|..|+..|. .|-.|+..|..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHCF-----------LCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTTC-----------BCTTTCCBTTT
T ss_pred CCccCCCccccCccEEEECccccCcccC-----------eECCCCCcCCC
Confidence 5666766655 3455555666666663 56666666654
No 217
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.61 E-value=21 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=18.3
Q ss_pred cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCC
Q psy2200 146 AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184 (248)
Q Consensus 146 p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 184 (248)
+.-..||+.|. ..-.....||.|+..-....
T Consensus 68 ~~C~~CG~~F~--------~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 68 AQCRKCGFVFK--------AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CBBTTTCCBCC--------CCSSCCSSCSSSCCCCBCCC
T ss_pred cChhhCcCeec--------ccCCCCCCCcCCCCCccCCc
Confidence 34457999991 11112358999987654433
No 218
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=35.57 E-value=4.4 Score=32.30 Aligned_cols=46 Identities=17% Similarity=0.456 Sum_probs=30.8
Q ss_pred eeecccccccCCcEEc--cCCCccCHhHHHHHHHhC-CCCCcccccccccc
Q psy2200 134 YDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETC-PNRQTCPVCKAAID 181 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~ 181 (248)
..|.+|.+.-. +++ .|...||..|+..-+... .+...||.|+..-.
T Consensus 8 ~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 8 DWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 46999985421 222 588889999987655432 23678999986543
No 219
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=35.50 E-value=13 Score=26.96 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=28.1
Q ss_pred eeecccccccCCc----EEccCCCccCHhHHHHHHHhCCCCCcccccccc
Q psy2200 134 YDCNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAA 179 (248)
Q Consensus 134 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 179 (248)
..|..|...|.-- .--.||.+||..|....... .+.|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~---vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG---PRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-------CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC---ceECHHHHHH
Confidence 4799999877521 23379999999997654432 3478888554
No 220
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.95 E-value=5.9 Score=25.21 Aligned_cols=44 Identities=18% Similarity=0.496 Sum_probs=27.3
Q ss_pred CceeecccccccCCcEEc---c--CC-CccCHhHHHHHHHhCCCCCccccccc
Q psy2200 132 QIYDCNICLDTAKDAVIS---M--CG-HLFCWPCLHQWLETCPNRQTCPVCKA 178 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~ 178 (248)
+...| ||.+.... .++ . |. ..||..|+.-- ....+...||.|+.
T Consensus 10 e~~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCcC-cCCCCCEECcCccc
Confidence 34677 89885433 444 3 44 67999998721 11123678999865
No 221
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.48 E-value=31 Score=22.67 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=29.3
Q ss_pred ceeecccccccC-CcEEc---cCCCccCHhHHHHHHHh--CCCCCccccccccc
Q psy2200 133 IYDCNICLDTAK-DAVIS---MCGHLFCWPCLHQWLET--CPNRQTCPVCKAAI 180 (248)
Q Consensus 133 ~~~C~IC~~~~~-~p~~~---~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~ 180 (248)
...| ||..... ...++ .|..-||..|+.--... ......||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3566 8887653 22333 57777999998643322 12367899997654
No 222
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.47 E-value=17 Score=23.65 Aligned_cols=39 Identities=23% Similarity=0.563 Sum_probs=29.5
Q ss_pred eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCC
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 184 (248)
.|..|...+...++..-|..|+..|. .|-.|+..|....
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCF-----------VCAVCRLPFPPGD 55 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTS-----------SCSSSCCCCCSSS
T ss_pred cCccccCEeccceEEECCceeCccCC-----------ccccCCCCCCCCC
Confidence 78889887776666667777888774 7889988886544
No 223
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.15 E-value=46 Score=21.25 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=19.3
Q ss_pred eeecccccccCC-cEEccCCCccCHhH
Q psy2200 134 YDCNICLDTAKD-AVISMCGHLFCWPC 159 (248)
Q Consensus 134 ~~C~IC~~~~~~-p~~~~CgH~fC~~C 159 (248)
..|..|...+.- +..-.||.+||..=
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKCKCGSTFCGSH 42 (64)
T ss_dssp CSCTTTCCCCTTSCEECTTSCEECSSS
T ss_pred CcChhhCCcccccCeEeecCCEecccC
Confidence 579999986443 46668999999754
No 224
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.62 E-value=5.1 Score=25.71 Aligned_cols=45 Identities=27% Similarity=0.559 Sum_probs=29.1
Q ss_pred ceeecccccccCCcEEc--cCCCccCHhHHHHHHHhC-CCCCcccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETC-PNRQTCPVCKAA 179 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 179 (248)
...|.||.+.- .+++ .|...|+..|+..-+... .+...||.|...
T Consensus 8 ~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDGG--ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCCCC--CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35799998742 2222 677789999987543322 236689999654
No 225
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.18 E-value=42 Score=23.66 Aligned_cols=44 Identities=32% Similarity=0.495 Sum_probs=24.7
Q ss_pred eeeccccccc-------CCcEEc--cCCCccCHhHHHH---HHH-hCCCCCcccccc
Q psy2200 134 YDCNICLDTA-------KDAVIS--MCGHLFCWPCLHQ---WLE-TCPNRQTCPVCK 177 (248)
Q Consensus 134 ~~C~IC~~~~-------~~p~~~--~CgH~fC~~Ci~~---~~~-~~~~~~~CP~Cr 177 (248)
..|.+|+..- .+..+. .|+..|+..|+.. ... ...+...||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4688887642 112333 6899999999842 111 111245677664
No 226
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.07 E-value=51 Score=21.06 Aligned_cols=26 Identities=23% Similarity=0.636 Sum_probs=19.5
Q ss_pred eeecccccccCC-cEEccCCCccCHhH
Q psy2200 134 YDCNICLDTAKD-AVISMCGHLFCWPC 159 (248)
Q Consensus 134 ~~C~IC~~~~~~-p~~~~CgH~fC~~C 159 (248)
..|..|...+.- +..-.||.+||..=
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CCCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred CcChhhCCccCccCEEeecCCEecccc
Confidence 579999986443 46668999999764
No 227
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.96 E-value=17 Score=24.05 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=30.8
Q ss_pred CCceeecccccccCCcEEc-----cCCCccCHhHHHHHHHh------CCCCCccccccccc
Q psy2200 131 GQIYDCNICLDTAKDAVIS-----MCGHLFCWPCLHQWLET------CPNRQTCPVCKAAI 180 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~ 180 (248)
...+.| ||........++ .|..-||..|+.---.. ......||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345678 898874444444 47778999998642221 11357899997643
No 228
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.95 E-value=22 Score=22.50 Aligned_cols=38 Identities=18% Similarity=0.438 Sum_probs=24.3
Q ss_pred eeecccccccCC----cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 134 YDCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 134 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
..|..|.+.+.. .++..-|..|+..|. .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF-----------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC-----------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC-----------EeccCCCcCCC
Confidence 367777776653 445456667777663 67777777653
No 229
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.86 E-value=44 Score=22.22 Aligned_cols=39 Identities=18% Similarity=0.459 Sum_probs=25.9
Q ss_pred eeecccccccCC-cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 134 YDCNICLDTAKD-AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 134 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
..|..|...+.. ..+..-|..|+..|. .|-.|...|...
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFHISCF-----------RCSYCNNKLSLG 55 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEETTTC-----------BCTTTCCBCCTT
T ss_pred CcCccCCCccCCceeEEECCCEECCCCC-----------eeCCCCCCCCCC
Confidence 478888877653 344566777777773 677787776643
No 230
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=22 Score=22.79 Aligned_cols=39 Identities=15% Similarity=0.430 Sum_probs=28.8
Q ss_pred eeecccccccCC----cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 134 YDCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 134 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
..|..|...+.. .++..-|..|+..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF-----------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC-----------BCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC-----------ChhhCCCcCCCC
Confidence 368888887775 566667777888884 788898887643
No 231
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=31.70 E-value=15 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=19.5
Q ss_pred eeecccccccCCcEEccCCCccCH
Q psy2200 134 YDCNICLDTAKDAVISMCGHLFCW 157 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~~CgH~fC~ 157 (248)
..|..|...-..-+-|.|||++|.
T Consensus 25 ~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 25 QPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp CCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CcCccccCCCCeeeeeecCccccC
Confidence 479999877666678899999984
No 232
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.65 E-value=21 Score=22.86 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=26.8
Q ss_pred eeecccccccC-CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 134 YDCNICLDTAK-DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 134 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
..|..|.+.+. ...+..-|..|+..|. .|-.|+..|...
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCL-----------KCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTC-----------BCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCC-----------CCCCCCCccCCC
Confidence 46888888766 4445556777777773 788888877643
No 233
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=31.34 E-value=7.6 Score=30.20 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=30.0
Q ss_pred eeecccccccCCcEEc--cCCCccCHhHHHHHHHhCC-CCCccccccccc
Q psy2200 134 YDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETCP-NRQTCPVCKAAI 180 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~ 180 (248)
..|.||.+.-. +++ .|...||..|+..-+...+ +...||.|+..-
T Consensus 5 ~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCCCCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46999986422 222 5888899999866554322 357899998654
No 234
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.00 E-value=20 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=10.4
Q ss_pred eecccccccCCcEEccCCCccCHhH
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPC 159 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~C 159 (248)
.|..|.+.+....+..-|..|+..|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C 31 (69)
T 2cur_A 7 GCVKCNKAITSGGITYQDQPWHADC 31 (69)
T ss_dssp CCSSSCCCCCTTCEEETTEEECTTT
T ss_pred CCcccCCEeCcceEEECccccccCc
Confidence 3444444443333333344444444
No 235
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=30.78 E-value=8 Score=26.66 Aligned_cols=46 Identities=15% Similarity=0.401 Sum_probs=27.0
Q ss_pred CCceeecccccccCCcEEc--cCC---CccCHhHHHHHHHhCCCCCcccc-ccc
Q psy2200 131 GQIYDCNICLDTAKDAVIS--MCG---HLFCWPCLHQWLETCPNRQTCPV-CKA 178 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~--~Cg---H~fC~~Ci~~~~~~~~~~~~CP~-Cr~ 178 (248)
.+...| ||.......++. .|. ..||..|+.-- ....+...||. |+.
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCC-cCCCCCccCChhhcc
Confidence 344678 898754443333 333 56888998621 11123678999 874
No 236
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.47 E-value=27 Score=22.68 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=26.0
Q ss_pred eeecccccccC--CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 134 YDCNICLDTAK--DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 134 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
..|..|.+.+. +.++..=|..|+..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCF-----------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTC-----------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECccccccccC-----------chhhCCCccCCC
Confidence 36778877766 4455556777777773 677787777643
No 237
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=30.18 E-value=5.4 Score=26.63 Aligned_cols=44 Identities=25% Similarity=0.567 Sum_probs=27.7
Q ss_pred eecccccccCCcEEc---cCCCccCHhHHHHHHHhCCC-C-Cccccccc
Q psy2200 135 DCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCPN-R-QTCPVCKA 178 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~-~-~~CP~Cr~ 178 (248)
.|.||...-....++ .|...|+..|+..-+...+. . ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 567777654433344 57888999998765544332 3 68998864
No 238
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.02 E-value=3.1 Score=35.60 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=33.8
Q ss_pred CCceeecccccccCCcEEc----cCC--CccCHhHHHHHHHhCCCCCcccccccc
Q psy2200 131 GQIYDCNICLDTAKDAVIS----MCG--HLFCWPCLHQWLETCPNRQTCPVCKAA 179 (248)
Q Consensus 131 ~~~~~C~IC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 179 (248)
+....||||-....-.++. .=| +.+|..|-..|--.+. .||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~---~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRI---KCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTT---SCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCc---CCcCCCCC
Confidence 4456999999876655443 134 5689999999977655 99999775
No 239
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.39 E-value=33 Score=22.38 Aligned_cols=38 Identities=16% Similarity=0.459 Sum_probs=26.6
Q ss_pred ceeecccccccC-CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 133 IYDCNICLDTAK-DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 133 ~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
...|.-|.+.+. ...+..-|..|+..|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCF-----------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTC-----------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccC-----------CcCcCCCCcC
Confidence 357999988765 3344456777777774 7888888776
No 240
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.37 E-value=6.1 Score=26.34 Aligned_cols=44 Identities=25% Similarity=0.612 Sum_probs=28.0
Q ss_pred eecccccccCCc-EEc--cCCCccCHhHHHHHHHhCC-C-CCccccccc
Q psy2200 135 DCNICLDTAKDA-VIS--MCGHLFCWPCLHQWLETCP-N-RQTCPVCKA 178 (248)
Q Consensus 135 ~C~IC~~~~~~p-~~~--~CgH~fC~~Ci~~~~~~~~-~-~~~CP~Cr~ 178 (248)
.|.||...-... +++ .|...||..|+..-+...+ + ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888643332 333 6788899999875444322 2 467888854
No 241
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.27 E-value=19 Score=23.05 Aligned_cols=36 Identities=17% Similarity=0.425 Sum_probs=21.1
Q ss_pred eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
.|.-|...+...++..-|..|+..|. .|-.|...|.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSCA-----------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTTS-----------CCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCcC-----------EeCCCCCCCC
Confidence 56666665555444455666666653 5666666654
No 242
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.11 E-value=27 Score=22.52 Aligned_cols=36 Identities=19% Similarity=0.552 Sum_probs=21.4
Q ss_pred eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
.|..|.+.+....+..=|..|+..|. .|-.|+..|.
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHRECL-----------VCTGCQTPLA 52 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTTC-----------BCSSSCCBCT
T ss_pred cCCCCCCEecCcEEEECCchhhhhhC-----------CcccCCCcCC
Confidence 56666665554444455566666653 5666766664
No 243
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.83 E-value=25 Score=22.09 Aligned_cols=37 Identities=22% Similarity=0.519 Sum_probs=21.8
Q ss_pred eecccccccCC--cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 135 DCNICLDTAKD--AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 135 ~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.|..|.+.+.. .++..-|..|+..|. .|-.|+..|..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 45 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETCF-----------ICHRCQQPIGT 45 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTTT-----------CCSSSCCCCCS
T ss_pred CCccCCCcccCCceEEEECcCeecccCC-----------cccccCCccCC
Confidence 56777766652 344455666666663 56667666653
No 244
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.76 E-value=52 Score=23.51 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=29.7
Q ss_pred ceeecccccccCCc-EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 133 IYDCNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 133 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
...|.-|...+... ++..-|..|+..|. .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL-----------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS-----------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc-----------CcCcCCCccc
Confidence 35899999887766 45567888888884 7999998886
No 245
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.63 E-value=31 Score=30.28 Aligned_cols=46 Identities=20% Similarity=0.577 Sum_probs=31.4
Q ss_pred ceeecccccccCCcEEc---cCCCccCHhHHHHHHHhC-------CCCCcccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETC-------PNRQTCPVCKAA 179 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~ 179 (248)
...|.+|-+--. -+.- .|...||..||...+... .....|=+|.-.
T Consensus 93 ~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 458999987542 1211 688999999999987221 135789999654
No 246
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.43 E-value=9.7 Score=24.75 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCCceeecccccccCCc-EEc---cCCCccCHhHHHHHHH-hCCCCCcccccccc
Q psy2200 130 KGQIYDCNICLDTAKDA-VIS---MCGHLFCWPCLHQWLE-TCPNRQTCPVCKAA 179 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~ 179 (248)
....+.| ||.....+. .++ .|..-||..|+..-.. .......||.|+..
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3455788 798765432 344 4666688888754221 11235688888654
No 247
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.95 E-value=50 Score=21.53 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=28.8
Q ss_pred ceeecccccccCC-cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCC
Q psy2200 133 IYDCNICLDTAKD-AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184 (248)
Q Consensus 133 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 184 (248)
...|..|...+.. ..+..-|..|+..|. .|-.|+..|....
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF-----------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCF-----------RCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTC-----------BCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcC-----------EEcCCCCCcCCCc
Confidence 3579999987743 233456777888884 7889988886544
No 248
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.85 E-value=15 Score=23.78 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=31.4
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
..+.+.||+|...+.--. ..+...|+.|+..+...+-+|+......
T Consensus 7 LLeiL~CP~ck~~L~~~~-------------------~~g~LvC~~c~~~YPI~dGIPvmL~~Ea 52 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYLE-------------------SEQLLVNERLNLAYRIDDGIPVLLIDEA 52 (67)
T ss_dssp GTCCCBCTTTCCBCEEET-------------------TTTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred HHHHhCCCCCCCcCeEeC-------------------CCCEEEcCCCCccccCCCCEeeeChhHh
Confidence 445678999998654210 1124579999988888888888776644
No 249
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.43 E-value=20 Score=23.34 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=19.4
Q ss_pred eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
.|..|.+.+...++..-|..|+..|. .|-.|+..|.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPECF-----------ACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTSC-----------BCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceeccccC-----------CccCCCCccC
Confidence 46666665554444444555555552 5666665554
No 250
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.05 E-value=37 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=18.5
Q ss_pred ceeccccCCCCCCc----eEeccCccccc
Q psy2200 34 IYDCNICFDTAKDA----VISMCGHLFWL 58 (248)
Q Consensus 34 ~~~C~iCld~~~~~----v~~~CGH~f~~ 58 (248)
.-.|..|......+ ..-.||.+||.
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~ 43 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCM 43 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCT
T ss_pred CCcchhhCCeecccccCceEecCCCEehh
Confidence 34799998887766 44589999953
No 251
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.89 E-value=8.7 Score=25.00 Aligned_cols=44 Identities=25% Similarity=0.573 Sum_probs=27.3
Q ss_pred eecccccccCCcEEc---cCCCccCHhHHHHHHHhCC-C-CCccccccc
Q psy2200 135 DCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCP-N-RQTCPVCKA 178 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~-~-~~~CP~Cr~ 178 (248)
.|.||...-....++ .|...||..|+..-+...+ + ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777543333333 5788899999875444322 3 568888864
No 252
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=23 Score=23.06 Aligned_cols=37 Identities=27% Similarity=0.684 Sum_probs=23.8
Q ss_pred eeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
..|..|...+...++..-|..|+..|. .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGCF-----------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTC-----------BCSSSCCBCT
T ss_pred CccccCCCeecceeEEECCccccHHhc-----------CcccCCCccC
Confidence 467777776665555556666666663 6777777665
No 253
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=25.85 E-value=9.2 Score=31.06 Aligned_cols=44 Identities=25% Similarity=0.573 Sum_probs=26.2
Q ss_pred eecccccccCCcEEc---cCCCccCHhHHHHHHHhCC-C-CCccccccc
Q psy2200 135 DCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCP-N-RQTCPVCKA 178 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~-~-~~~CP~Cr~ 178 (248)
.|.+|...-....++ .|...||..|+..-+...+ + ...||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 688887643222222 6888899999986554433 2 468999964
No 254
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.70 E-value=20 Score=23.24 Aligned_cols=46 Identities=13% Similarity=-0.011 Sum_probs=30.9
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
..+.+.||+|...+.-- .. .+...|+.|+..+...+-+|+......
T Consensus 5 LL~iL~CP~ck~~L~~~--~~-----------------~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYH--QD-----------------KQELWSRQAKLAYPIKDGIPYMLENEA 50 (68)
T ss_dssp SSCCCBCSSSCCBCEEE--TT-----------------TTEEEETTTTEEEEEETTEECCCTTTC
T ss_pred HhhheECCCCCCcCeEe--CC-----------------CCEEEcCCCCcEecCCCCeeeeChhhc
Confidence 34567899999865421 10 123479999888888888888766544
No 255
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.50 E-value=29 Score=22.39 Aligned_cols=37 Identities=16% Similarity=0.445 Sum_probs=21.6
Q ss_pred eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 182 (248)
.|..|...+...++..-|..|+..|. .|-.|+..|..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPECF-----------VCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTTC-----------BCSSSCCBSCS
T ss_pred ccccCCCeecceeEEECCCeEecCcC-----------ChhhCCCCCCC
Confidence 56666665555444445555655553 56677666654
No 256
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.37 E-value=74 Score=19.79 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=24.8
Q ss_pred CceeecccccccCCc-EEccCCCccCHhHHHHHHHh
Q psy2200 132 QIYDCNICLDTAKDA-VISMCGHLFCWPCLHQWLET 166 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~ 166 (248)
.-+.|..|...+... ....=|..||..|..+.+..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 347788888877543 44556788999998877653
No 257
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.18 E-value=66 Score=19.92 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=10.7
Q ss_pred CCceeccccCCCCC
Q psy2200 32 SQIYDCNICFDTAK 45 (248)
Q Consensus 32 ~~~~~C~iCld~~~ 45 (248)
...|.|.+|...+.
T Consensus 16 ~~~~~C~~C~~~f~ 29 (77)
T 2cot_A 16 RRRYKCDECGKSFS 29 (77)
T ss_dssp SCSSBCSSSCCBCS
T ss_pred CCCEECCCCCcccC
Confidence 45799999976665
No 258
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.64 E-value=14 Score=29.00 Aligned_cols=46 Identities=17% Similarity=0.438 Sum_probs=28.7
Q ss_pred eeecccccccCCcEEccCCCccCHhHHHHHHHh-CCCCCcccccccc
Q psy2200 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLET-CPNRQTCPVCKAA 179 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~ 179 (248)
..|.+|.+.-.--.--.|-..||..|+..-+.. ..+...||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 368888864321111157778999998654433 2246789999765
No 259
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.54 E-value=30 Score=26.38 Aligned_cols=43 Identities=21% Similarity=0.523 Sum_probs=28.6
Q ss_pred ceeecccccccCCcEEc-----cCCCccCHhHHHHHHHhC-------CCCCccccccc
Q psy2200 133 IYDCNICLDTAKDAVIS-----MCGHLFCWPCLHQWLETC-------PNRQTCPVCKA 178 (248)
Q Consensus 133 ~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~ 178 (248)
...|.||-+-- .++ .|-..||..||..++... .....|=+|.-
T Consensus 79 ~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 35788887642 233 377889999999886431 13567888853
No 260
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.57 E-value=7.3 Score=27.61 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=27.9
Q ss_pred eecccccccCCcEEc---cCCCccCHhHHHHHHHhCC-CCCcccccccc
Q psy2200 135 DCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETCP-NRQTCPVCKAA 179 (248)
Q Consensus 135 ~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~ 179 (248)
.|.||...-.+..++ .|...||..|+..-+...+ +...||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 567777654433333 6788899999875444322 35678888653
No 261
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=23.13 E-value=10 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=15.3
Q ss_pred CCCccCHhHHHHHHHhCCCCCccccccc
Q psy2200 151 CGHLFCWPCLHQWLETCPNRQTCPVCKA 178 (248)
Q Consensus 151 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 178 (248)
|..-|+..|+..-.........||.|+.
T Consensus 24 C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 24 CHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CCccccccccCCCcccCCCcEECcCCCC
Confidence 5555667776533222223567777764
No 262
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.01 E-value=35 Score=21.76 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=29.9
Q ss_pred CceeecccccccCC-cEEccCCCccCH-hHHHHHHHhCCCCCcccccccc
Q psy2200 132 QIYDCNICLDTAKD-AVISMCGHLFCW-PCLHQWLETCPNRQTCPVCKAA 179 (248)
Q Consensus 132 ~~~~C~IC~~~~~~-p~~~~CgH~fC~-~Ci~~~~~~~~~~~~CP~Cr~~ 179 (248)
+-+.|..|...+.. .....=|..||. .|..+.+.. .|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~-----~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP-----KGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSC-----CCSSCCCS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCc-----cCCCcCCc
Confidence 34789999888765 455566788999 698665432 78888644
No 263
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.96 E-value=88 Score=21.12 Aligned_cols=27 Identities=37% Similarity=0.790 Sum_probs=20.3
Q ss_pred Cceeecc--cccccCCcEEcc-CCCccCHh
Q psy2200 132 QIYDCNI--CLDTAKDAVISM-CGHLFCWP 158 (248)
Q Consensus 132 ~~~~C~I--C~~~~~~p~~~~-CgH~fC~~ 158 (248)
....|.. |.....-|+.-. ||..||..
T Consensus 24 ~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp CCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 3468998 998766666665 99999864
No 264
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.73 E-value=3.9 Score=28.61 Aligned_cols=40 Identities=23% Similarity=0.542 Sum_probs=26.1
Q ss_pred eeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181 (248)
Q Consensus 134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 181 (248)
..||+|...+.. .=|+.+|..|-..+.. ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~----~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM----KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE----EEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc----cccCcchhhHHH
Confidence 689999976542 1234458888554333 237999988875
No 265
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.69 E-value=48 Score=21.40 Aligned_cols=38 Identities=16% Similarity=0.426 Sum_probs=25.8
Q ss_pred eecccccccC--CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 135 DCNICLDTAK--DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 135 ~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
.|..|...+. ..++..=|..|+..|. .|-.|+..|...
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFYEDRHFHEGCF-----------RCCRCQRSLADE 56 (82)
T ss_dssp BCTTTCCBCCSSCCBCCCSSCCCBTTTS-----------BCTTTCCBCSSC
T ss_pred cCccCCCccccCcEEEEeCCccccccCC-----------eecCCCCccCCC
Confidence 6888887766 3344445777777773 788888887643
No 266
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=21.52 E-value=35 Score=24.14 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=28.0
Q ss_pred CceeecccccccCCcEEcc-----CCCccCHhHHHHHHHhC-CCCCccccccccccc
Q psy2200 132 QIYDCNICLDTAKDAVISM-----CGHLFCWPCLHQWLETC-PNRQTCPVCKAAIDK 182 (248)
Q Consensus 132 ~~~~C~IC~~~~~~p~~~~-----CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~ 182 (248)
....|.+|.+. ..++- |-..|+..|+. +... .+...||.|.-.+..
T Consensus 14 ~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 14 HEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 34579999853 23333 55678888886 3332 235678877655543
No 267
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.29 E-value=50 Score=20.92 Aligned_cols=39 Identities=18% Similarity=0.541 Sum_probs=23.7
Q ss_pred eeecccccccC--CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200 134 YDCNICLDTAK--DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 134 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
..|.-|.+.+. +.++..-|..|+..|. .|-.|+..+...
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 52 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCF-----------VCAQCFQQFPEG 52 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTC-----------CCTTTCCCCGGG
T ss_pred CCchhcCCccCCCceEEEeCccEeccccC-----------eECCCCCCCCCC
Confidence 46777777664 3344455666666663 677777766543
No 268
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.11 E-value=22 Score=26.26 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=28.6
Q ss_pred eeecccccccC---Cc--EEccCCCccCHhHHHHHHH-hCCCCCcccccccc
Q psy2200 134 YDCNICLDTAK---DA--VISMCGHLFCWPCLHQWLE-TCPNRQTCPVCKAA 179 (248)
Q Consensus 134 ~~C~IC~~~~~---~p--~~~~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~ 179 (248)
-.|.+|...+. +. +-..|.|.+|..|-..... .......|-+|++.
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 58999999773 11 3347899999988542211 11124678888754
No 269
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=20.96 E-value=41 Score=23.18 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=17.9
Q ss_pred eeecccccccCC-cEEcc--CCCccCHh
Q psy2200 134 YDCNICLDTAKD-AVISM--CGHLFCWP 158 (248)
Q Consensus 134 ~~C~IC~~~~~~-p~~~~--CgH~fC~~ 158 (248)
..|..|...-.+ -+-|. |||++|..
T Consensus 26 ~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 26 GTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CcCcCcCCCCCCceeeecccCCCcccCC
Confidence 479999854434 46777 99999943
No 270
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.95 E-value=37 Score=20.98 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=24.9
Q ss_pred eecccccccC--CcEEccCCCccC--HhHHHHHHHhCCCCCcccccccccccC
Q psy2200 135 DCNICLDTAK--DAVISMCGHLFC--WPCLHQWLETCPNRQTCPVCKAAIDKD 183 (248)
Q Consensus 135 ~C~IC~~~~~--~p~~~~CgH~fC--~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 183 (248)
.|.-|...+. +.++..-|..|+ ..|. .|-.|+.+|...
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF-----------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECF-----------LCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTS-----------BCTTTCCBCTTS
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCE-----------ECCCCCCcCCCC
Confidence 5777777666 345555676777 6663 677787777543
No 271
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=20.69 E-value=36 Score=22.49 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=8.6
Q ss_pred CCCCceeccccC
Q psy2200 30 DKSQIYDCNICF 41 (248)
Q Consensus 30 ~~~~~~~C~iCl 41 (248)
.....|.|+||.
T Consensus 13 ~~~~tWVCpICs 24 (76)
T 2j9u_B 13 DVVSTWVCPICM 24 (76)
T ss_dssp --CEEEECTTTC
T ss_pred ccccceECcccc
Confidence 346679999997
No 272
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.56 E-value=62 Score=16.23 Aligned_cols=15 Identities=20% Similarity=0.436 Sum_probs=11.0
Q ss_pred CCceeccccCCCCCC
Q psy2200 32 SQIYDCNICFDTAKD 46 (248)
Q Consensus 32 ~~~~~C~iCld~~~~ 46 (248)
...|.|.+|...|..
T Consensus 7 ~~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 7 GKTHLCDMCGKKFKS 21 (36)
T ss_dssp CSSCBCTTTCCBCSS
T ss_pred CCCeecCcCCCCcCc
Confidence 456999999776653
No 273
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.45 E-value=21 Score=23.21 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200 130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS 194 (248)
Q Consensus 130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 194 (248)
..+.+.||+|...+.--. ..+...|+.|+..+...+-+|+......
T Consensus 5 LL~iL~CP~ck~~L~~~~-------------------~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQR-------------------AQAELVCNADRLAFPVRDGVPIMLEAEA 50 (70)
T ss_dssp CCCCCBCTTTCCBEEEET-------------------TTTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred HhhheECCCCCCcCEEeC-------------------CCCEEEcCCCCceecCCCCeeeeChhhc
Confidence 445678999998654210 0124589999998888888888776644
Done!