RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2200
(248 letters)
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 86.0 bits (212), Expect = 1e-19
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 120 DQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAA 179
++ C IC + KD I CGHL C CL W E+ Q CP C+
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCE 376
Query: 180 IDKDKVIPVY 189
I + I V
Sbjct: 377 IKGTEPIVVD 386
Score = 39.7 bits (92), Expect = 4e-04
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 21 DQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
++ S C IC + KD I CGHL
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM 354
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 74.0 bits (182), Expect = 8e-18
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 131 GQIYDCNICLDT-------AKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
G + C IC+D + V + CGH+FC CL L+ N TCP C+ I+
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHK 57
Query: 184 KVIPVY 189
+ P+Y
Sbjct: 58 RYHPIY 63
Score = 29.0 bits (65), Expect = 0.24
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 33 QIYDCNICFDT-------AKDAVISMCGHLF 56
+ C IC D + V + CGH+F
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 71.1 bits (174), Expect = 3e-16
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 132 QIYDCNICLDTAKDAVI-SMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
+++ C IC++ +DA + C L C+ C+ +WL R CP C+A + +++
Sbjct: 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE--QRAQCPHCRAPLQLRELVNCR 77
Score = 33.3 bits (76), Expect = 0.014
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 32 SQIYDCNICFDTAKDAVI-SMCGHLF 56
++++ C IC + +DA + C L
Sbjct: 20 AEVFRCFICMEKLRDARLCPHCSKLC 45
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 69.5 bits (170), Expect = 5e-16
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
G + + +C ICL T V C H+FC+ C+ + C +C+
Sbjct: 1 GSSGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW---LGKRCALCRQ 57
Query: 179 AIDKDKVIPVYGRG 192
I +D + G
Sbjct: 58 EIPEDFLDSGPSSG 71
Score = 32.5 bits (74), Expect = 0.018
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 32 SQIYDCNICFDTAKDAVISMCGHLF 56
+ +C IC T V C H+F
Sbjct: 13 LTVPECAICLQTCVHPVSLPCKHVF 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 69.5 bits (170), Expect = 5e-16
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 129 DKGQIYDCNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181
C IC+D + V + CGH+FC CL L+ N TCP C+ I+
Sbjct: 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKIN 62
Query: 182 KDKVIPVY 189
+ P+Y
Sbjct: 63 HKRYHPIY 70
Score = 31.3 bits (71), Expect = 0.048
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 28 GNDKSQIYDCNICFDTAKD-------AVISMCGHLF 56
G S C IC D + V + CGH+F
Sbjct: 4 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF 39
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 65.6 bits (160), Expect = 2e-14
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
G + G ++ + C IC ++ V++ C H FC C + C +C
Sbjct: 1 GSSGSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR---ATPRCYICDQ 57
Query: 179 AIDK 182
Sbjct: 58 PTGG 61
Score = 38.3 bits (89), Expect = 2e-04
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 20 GDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
G + G ++ + C IC ++ V++ C H F
Sbjct: 1 GSSGSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYF 37
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 61.3 bits (149), Expect = 6e-13
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
Y C C + CGH FC C+ L + C C+ +I KDKV
Sbjct: 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSS--PKCTACQESIVKDKV 65
Score = 31.7 bits (72), Expect = 0.028
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 35 YDCNICFDTAKDAVISMCGHLF 56
Y C C + CGH F
Sbjct: 16 YKCEKCHLVLCSPKQTECGHRF 37
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 60.1 bits (145), Expect = 1e-11
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 84 QRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTA 143
R++++ ++ + + K+ + E EN+ C IC +
Sbjct: 19 NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENE----LQCIICSEYF 74
Query: 144 KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
+AV C H FC C+++W++ + CP+C+ I
Sbjct: 75 IEAVTLNCAHSFCSYCINEWMK---RKIECPICRKDI 108
Score = 29.2 bits (65), Expect = 0.65
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 8 SKQTPPNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
+ + + ++ + + C IC + +AV C H F
Sbjct: 38 QTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSF 86
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 57.4 bits (139), Expect = 2e-11
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
C ICL+ + +++ C H FC+ C+ +W+ TCP+CK ++
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVES 52
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 57.2 bits (138), Expect = 2e-11
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQ 171
G + C IC+D + V + CGH+FC CL L+ N
Sbjct: 1 GSSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NAN 57
Query: 172 TCPVCKAAIDK 182
TCP C+ I+
Sbjct: 58 TCPTCRKKINH 68
Score = 29.5 bits (66), Expect = 0.16
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 20 GDQKKTDGGNDKSQIYDCNICFDTAKD-------AVISMCGHLF 56
G + G S C IC D + V + CGH+F
Sbjct: 1 GSSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 57.1 bits (138), Expect = 4e-11
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C IC + A+ I C H +C C+ ++L + CP C + + +
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLS---YKTQCPTCCVTVTEPDLKN 74
Score = 28.2 bits (63), Expect = 1.0
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAV-ISMCGHLF 56
C ICF+ A+ I C H +
Sbjct: 25 CGICFEYFNIAMIIPQCSHNY 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 57.4 bits (139), Expect = 5e-11
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
C ICL+ K+ V + C H+FC C+ + L CP+CK
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Score = 27.4 bits (61), Expect = 2.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 37 CNICFDTAKDAVISMCGHLF 56
C IC + K+ V + C H+F
Sbjct: 24 CPICLELIKEPVSTKCDHIF 43
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 54.4 bits (131), Expect = 3e-10
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C+IC DA I+ C H FC C+ + CP C + + + +
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFY---YSNRCPKCNIVVHQTQPLS 67
Score = 25.5 bits (56), Expect = 5.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAV-ISMCGHLF 56
C+IC DA I+ C H F
Sbjct: 18 CSICKGYLIDATTITECLHTF 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 53.9 bits (130), Expect = 3e-10
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
C++CL+ K+ VI CGH FC C+ +W E CPVC
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
Score = 25.7 bits (57), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 37 CNICFDTAKDAVISMCGHLF 56
C++C + K+ VI CGH F
Sbjct: 18 CSVCLEYLKEPVIIECGHNF 37
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 55.6 bits (134), Expect = 3e-10
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
Y+C ICL ++AV + CGH FC C+ + + CPV + ++++ P
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRD--AGHKCPVDNEILLENQLFPD 71
Score = 29.8 bits (67), Expect = 0.34
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 YDCNICFDTAKDAVISMCGHLF 56
Y+C IC ++AV + CGH F
Sbjct: 19 YECPICLMALREAVQTPCGHRF 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 53.8 bits (129), Expect = 1e-09
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
C IC++ + V C H C PC +E CP C+ +
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKAS--LCCPFCRRRV 60
Score = 29.1 bits (65), Expect = 0.47
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 35 YDCNICFDTAKDAVISMCGHLF 56
C IC + + V C H
Sbjct: 16 CQCGICMEILVEPVTLPCNHTL 37
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 52.8 bits (127), Expect = 1e-09
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
C ICLD + V CGH FC C+ Q ET CP+CK ++ K+ +
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 53.0 bits (127), Expect = 2e-09
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C C + + ++C H C CL + +CP C+ + + + V
Sbjct: 54 QCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVF--SCPACRYDLGRSYAMQV 105
Score = 26.9 bits (59), Expect = 4.1
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 36 DCNICFDTAKDAVISMCGHLF 56
C C + + ++C H
Sbjct: 54 QCICCQELVFRPITTVCQHNV 74
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 52.0 bits (125), Expect = 2e-09
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ---TCPVCKA 178
C ICL+ K+ V + C H FC C+ E+ N CPVC+
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67
Score = 25.0 bits (55), Expect = 8.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 37 CNICFDTAKDAVISMCGHLF 56
C IC + K+ V + C H F
Sbjct: 22 CPICLELLKEPVSADCNHSF 41
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 52.2 bits (125), Expect = 5e-09
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C IC D V + C HLFC C+ + L+ CP C+ +
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSYCPSCRYPCFPTDLES 75
Score = 28.0 bits (62), Expect = 1.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 35 YDCNICFDTAKDAVISMCGHLF 56
C IC D V + C HLF
Sbjct: 24 ISCQICEHILADPVETSCKHLF 45
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 50.5 bits (121), Expect = 5e-09
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 117 GSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
GS + K + + +C IC+D D +I C H FC C+ +W + + CP+C
Sbjct: 4 GSSGRVKQLTDEE-----ECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---HRNCPIC 54
Query: 177 KAAIDKDK 184
+ +
Sbjct: 55 RLQMTGAN 62
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 49.3 bits (118), Expect = 1e-08
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
C ICLD + V CGH FC C+ Q ET CP+C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 49.6 bits (119), Expect = 2e-08
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ---TCPVCKA 178
C ICL+ + CGH FC CL + + +CPVC+
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 50.2 bits (120), Expect = 2e-08
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
C +C DA I C H FC C+ ++LE + CP+C + K
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLE---TSKYCPICDVQVHK 62
Score = 25.9 bits (57), Expect = 7.3
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAV-ISMCGHLF 56
C +C DA I C H F
Sbjct: 18 CVLCGGYFIDATTIIECLHSF 38
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 50.5 bits (120), Expect = 3e-08
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCK 177
Y C+ C + + + CGH +C CL L + P Q C C
Sbjct: 32 YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP--QNCAACV 73
Score = 30.9 bits (69), Expect = 0.19
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 5 SSGSKQTPPNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
++ S P + + KT G Y C+ C + + + CGH +
Sbjct: 2 AAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRY 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 49.9 bits (119), Expect = 3e-08
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C+ C + ++ V + C H+FC C+ + T CPVC +
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG-----CPVCYTPAWIQDLKI 72
Score = 26.8 bits (59), Expect = 4.0
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAV-ISMCGHLF 56
C+ C + ++ V + C H+F
Sbjct: 25 CSRCTNILREPVCLGGCEHIF 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 49.8 bits (118), Expect = 4e-08
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 121 QKKTDGENDKGQIYDCNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQTC 173
K+ C IC+D + V + CGH+FC CL L+ N TC
Sbjct: 60 HKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTC 116
Query: 174 PVCKAAIDKDKVIPVY 189
P C+ I+ + P+Y
Sbjct: 117 PTCRKKINHKRYHPIY 132
Score = 48.6 bits (115), Expect = 1e-07
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 136 CNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
C IC+D + V + CGH+FC CL L+ N TCP C+ I+
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHK 61
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 50.4 bits (120), Expect = 4e-08
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
C ICLD K+ + C H FC C+ L + CP C+ +
Sbjct: 57 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE--CPTCRKKLVS 102
Score = 27.2 bits (60), Expect = 4.1
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAV-ISMCGHLF 56
C IC D K+ + C H F
Sbjct: 57 CPICLDMLKNTMTTKECLHRF 77
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 48.2 bits (115), Expect = 4e-08
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
C IC D DAV I CG+ +C C+ L TCP C
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH-TCPTCHQND 62
Score = 25.9 bits (57), Expect = 3.5
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAV-ISMCGHLF 56
C IC D DAV I CG+ +
Sbjct: 18 CLICKDIMTDAVVIPCCGNSY 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 48.6 bits (116), Expect = 5e-08
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
C IC D DAV I CG+ +C C+ L + TCP C
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQ 58
Score = 28.2 bits (63), Expect = 0.76
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAV-ISMCGHLF 56
C IC D DAV I CG+ +
Sbjct: 16 CLICKDIMTDAVVIPCCGNSY 36
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 51.8 bits (123), Expect = 5e-08
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 120 DQKKTDGENDKGQIYDCNICL------DTAKDAVI--SMCGHLFCWPCLHQWLETCPNRQ 171
+ + + CNIC + C CL +W +T + +
Sbjct: 295 WSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK 354
Query: 172 --------TCPVCKAAI 180
CP CKA +
Sbjct: 355 TFLEVSFGQCPFCKAKL 371
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 50.1 bits (119), Expect = 6e-08
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
Y+C ICL ++AV + CGH FC C+ + + CPV + ++++ P
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIR--DAGHKCPVDNEILLENQLFPD 71
Score = 28.5 bits (63), Expect = 1.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 YDCNICFDTAKDAVISMCGHLF 56
Y+C IC ++AV + CGH F
Sbjct: 19 YECPICLMALREAVQTPCGHRF 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 49.2 bits (117), Expect = 8e-08
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C C + V + C H C CL + + +CP C+ + ++ ++
Sbjct: 81 CVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVF--SCPACRHDLGQNYIMIP 131
Score = 26.9 bits (59), Expect = 4.3
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 37 CNICFDTAKDAVISMCGHLF 56
C C + V + C H
Sbjct: 81 CVCCQELVYQPVTTECFHNV 100
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 47.3 bits (113), Expect = 1e-07
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ----TCPVCKA 178
C ICL+ + + CGH C C+ + +CPVC
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGI 61
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 46.2 bits (110), Expect = 3e-07
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 124 TDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
T+ GQ C IC D + C H F PC+ WL+ TCPVC+
Sbjct: 31 TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---SGTCPVCRC 85
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 44.2 bits (105), Expect = 7e-07
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 135 DCNICLD---TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
C ICL+ T++ + CGHL C + L+ CP+C
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGPS 53
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 44.7 bits (106), Expect = 8e-07
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 117 GSGDQKKTDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTC 173
GS T+ G +C +C + ++V + C HLF C+ WLE +C
Sbjct: 1 GSSGSSGTEEHVGSGL--ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE---QHDSC 55
Query: 174 PVCKAAIDKD 183
PVC+ ++
Sbjct: 56 PVCRKSLTGQ 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 44.1 bits (104), Expect = 1e-06
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 133 IYDCNICLDTA-KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
+ CNIC + CG PC+ ++ ++ CP C +
Sbjct: 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEP-RCPHCNDYWPHE 65
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 42.7 bits (101), Expect = 2e-06
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN-RQTCPV 175
C C AK + C H C CL CP + P+
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49
Score = 25.0 bits (55), Expect = 4.7
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 37 CNICFDTAKDAVISMCGHLF 56
C C AK + C H
Sbjct: 9 CQQCQAEAKCPKLLPCLHTL 28
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 43.2 bits (102), Expect = 3e-06
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 117 GSGDQKKTDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTC 173
GS + K ++ C +CL+ +D + C H F CL +WLE R+ C
Sbjct: 4 GSSGKVKELNLHE-----LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---RKVC 55
Query: 174 PVCKAAIDK 182
P+C + +
Sbjct: 56 PLCNMPVLQ 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 42.5 bits (100), Expect = 4e-06
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 127 ENDKGQIYDCNICLDTAKDAVI--SMCGHLF-CWPCLHQWLETCPNRQTCPVCKAAIDKD 183
E+ + + C++C +D I GHL C+ C + + +CP+CK I
Sbjct: 1 EDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK---AGASCPICKKEI--Q 55
Query: 184 KVIPVY 189
VI V+
Sbjct: 56 LVIKVF 61
Score = 26.7 bits (59), Expect = 1.7
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 29 NDKSQIYDCNICFDTAKDAVI--SMCGHLF 56
+ ++ + C++C +D I GHL
Sbjct: 2 DCQNLLKPCSLCEKRPRDGNIIHGRTGHLV 31
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 42.1 bits (99), Expect = 8e-06
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 136 CNICLDTAKDAVISMCGHLF-CWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
C +C + ++ CGH C C Q+CPVC++ + + V VY
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESC-------AAQLQSCPVCRSRV--EHVQHVY 66
Score = 29.3 bits (66), Expect = 0.27
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 37 CNICFDTAKDAVISMCGHL 55
C +C + ++ CGH
Sbjct: 21 CMVCCEEEINSTFCPCGHT 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 42.0 bits (99), Expect = 9e-06
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 136 CNICLDTAKDAVIS----MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
C IC+++ + + CGH C CL + L + N CP C +
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 41.2 bits (97), Expect = 9e-06
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 136 CNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
C I + V+S +F L Q+++ P+ + ++++ +
Sbjct: 6 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSIEEIVEIV 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 41.3 bits (97), Expect = 1e-05
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 107 SKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLF-CWPCLHQWLE 165
S + + E S +++ + +K C IC+D V CGHL C C
Sbjct: 3 SGSSGSLQKEISTEEQLRRLQEEK----LCKICMDRNIAIVFVPCGHLVTCKQC------ 52
Query: 166 TCPNRQTCPVCKAAIDKDKVIPVY 189
CP+C I ++
Sbjct: 53 -AEAVDKCPMCYTVI--TFKQKIF 73
Score = 28.6 bits (64), Expect = 0.49
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 37 CNICFDTAKDAVISMCGHL 55
C IC D V CGHL
Sbjct: 28 CKICMDRNIAIVFVPCGHL 46
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 40.4 bits (95), Expect = 2e-05
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 122 KKTDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
+ + ++ C ICL + V + C HLF C+ QWL T + CP+C+
Sbjct: 3 QDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRV 59
Query: 179 AIDKD 183
I+
Sbjct: 60 DIEAQ 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 43.4 bits (101), Expect = 2e-05
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPV--CKAAIDKDKVIP 187
C I + +IS C H+F + +L+ R CP C + +
Sbjct: 184 CPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRD-CPQAACSQVVSMRDFVR 237
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 40.2 bits (94), Expect = 2e-05
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 136 CNICLDTAKDAVI--SMCGHLF-CWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
C IC K+ I GHL C+ C + + + CPVC+ I ++ Y
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---KPCPVCRQPI--QMIVLTY 62
Score = 25.9 bits (57), Expect = 3.5
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 37 CNICFDTAKDAVI--SMCGHLF 56
C IC K+ I GHL
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLM 32
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 43.0 bits (99), Expect = 4e-05
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 84 QRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTA 143
+S++ S + K E + + C +C+D
Sbjct: 246 AAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKE 305
Query: 144 KDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
V CGHL C C P+ + CP+C+ I + +
Sbjct: 306 VSVVFIPCGHLVVCQEC-------APSLRKCPICRGII--KGTVRTF 343
Score = 29.2 bits (63), Expect = 1.4
Identities = 10/53 (18%), Positives = 13/53 (24%)
Query: 3 TTSSGSKQTPPNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHL 55
K E + + C +C D V CGHL
Sbjct: 264 KNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHL 316
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 42.8 bits (100), Expect = 4e-05
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 133 IYDCNICLDTA-KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
+ CNIC + CG PC+ ++ ++ CP C +
Sbjct: 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEP-RCPHCNDYWPHE 230
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 40.1 bits (93), Expect = 4e-05
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 127 ENDKGQIYDCNICLD----TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
+ K +C +C++ + CG+ C C H+ CP C+ +
Sbjct: 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGL--CPACRKPYPE 62
Query: 183 DKVI 186
D +
Sbjct: 63 DPAV 66
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 38.7 bits (91), Expect = 6e-05
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 135 DCNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
+C +CL +D + CGH F C+ WL + TCP+C+ +
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS---TCPLCRLTV 53
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 39.0 bits (91), Expect = 6e-05
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCK 177
G + E + DC +C + + V+ C H C C Q CP+C+
Sbjct: 1 GSSGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGC-------VKYFQQCPMCR 53
Query: 178 AAIDKDKVIPVYG 190
+ + + G
Sbjct: 54 QFV--QESFALSG 64
Score = 26.7 bits (59), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 36 DCNICFDTAKDAVISMCGHL 55
DC +C + + V+ C H
Sbjct: 17 DCVVCQNGTVNWVLLPCRHT 36
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 39.1 bits (91), Expect = 1e-04
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 130 KGQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETC 167
C +CL I+ C +FC CL Q++E
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42
Score = 27.1 bits (60), Expect = 1.8
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 31 KSQIYDCNICFDTAKDA---VISMCGHLF 56
S C +C I+ C +F
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIF 30
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 37.7 bits (88), Expect = 3e-04
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 127 ENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
N + + C +C+ ++ + + C H F C+ +WL+ +TCP+C+A
Sbjct: 17 NNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSGPS 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 40.1 bits (93), Expect = 4e-04
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 121 QKKTDGENDKGQIYD---CNICLDTAKDAVISMC-GHLFCWPCLHQWLETCPNRQTCPVC 176
+ + + + G + D + KD VI + L + T P
Sbjct: 876 KADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL---SDSTDPFN 932
Query: 177 KAAIDKDKVIP 187
+ + + V P
Sbjct: 933 RMPLKLEDVTP 943
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 37.4 bits (87), Expect = 5e-04
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
Query: 121 QKKTDGENDKGQIYD---CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCK 177
K E D D + D V G + + + L N T P +
Sbjct: 14 AKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL---NSPTDPFNR 70
Query: 178 AAIDKDKVIP 187
+ + + P
Sbjct: 71 QTLTESMLEP 80
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 36.4 bits (84), Expect = 9e-04
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 136 CNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
C C K V C H F C+ W++ CP+C+ ++
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQDWVVQRI 79
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 36.0 bits (82), Expect = 0.002
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 20/65 (30%)
Query: 135 DCNICLD------------------TAKDAVISMCGHLFCWPCLHQWLE--TCPNRQTCP 174
DC IC++ ++ C H F CL CP
Sbjct: 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86
Query: 175 VCKAA 179
CK
Sbjct: 87 SCKTI 91
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 34.5 bits (80), Expect = 0.003
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C I L+ KD VI G + + +WL+ TCP + + + P
Sbjct: 11 CPISLELMKDPVIVSTGQTYERSSIQKWLDAGHK--TCPKSQETLLHAGLTP 60
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 34.6 bits (80), Expect = 0.004
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 125 DGENDKGQI---YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181
E D + + D V G + + + L N T P + +
Sbjct: 3 SAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL---NSPTDPFNRQMLT 59
Query: 182 KDKVIP 187
+ + P
Sbjct: 60 ESMLEP 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 35.2 bits (80), Expect = 0.004
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 133 IYDCNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
++ C+ C K + C H+FC+ C + + CP C + + +
Sbjct: 1 VHFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK--GDKMCPGCSDPVQRIEQCTR 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 36.8 bits (85), Expect = 0.004
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 122 KKTDGENDKGQIYD---CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
+ D + K I D I + ++ I+ G + + + L+ + PV ++
Sbjct: 194 SQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH--FNPVTRS 251
Query: 179 AIDKDKVIP 187
+ ++++IP
Sbjct: 252 PLTQEQLIP 260
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 33.8 bits (77), Expect = 0.006
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 134 YDCNICLDT-----AKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C C T + ++++CGH C C+ CP C + K
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAG--NCPECGTPLRKSNFRV 60
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.44.1.3
Length = 93
Score = 33.6 bits (76), Expect = 0.011
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMC----GHLFCWPCLHQWLE--------T 166
G + C IC + +D C H FC+PC + ++
Sbjct: 1 GSSGSSGSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVY 60
Query: 167 CPNRQTCPV 175
CP+ + CP+
Sbjct: 61 CPSGEKCPL 69
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 33.4 bits (76), Expect = 0.013
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 136 CNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQ---TCPV---CKAAIDKDKVIP 187
C I + K V + +CGH + + + +E+ R+ CP I K +I
Sbjct: 10 CPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 32.3 bits (73), Expect = 0.076
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 122 KKTDGENDKGQIYD---CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
+ D + K +I D I + ++ I+ G + + + L+ PV ++
Sbjct: 92 SQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR--VGHFDPVTRS 149
Query: 179 AIDKDKVIP 187
+ +D++IP
Sbjct: 150 PLTQDQLIP 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.27
Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 75/219 (34%)
Query: 41 FDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRPQGQRTERENSSVQSKVSNM 100
F + I++ LF++ G E P +PP S ++ + N
Sbjct: 292 FFVSVRKAITV---LFFI------GVRCYEAYPNTSLPP-----------SILEDSLENN 331
Query: 101 ATTSSGSKQTP------PNRDEGSGDQKKTDGENDK----GQIYDCNICL-DTAKDAVIS 149
S P +++ Q + N Q+ I L + AK+ V+S
Sbjct: 332 EGVPS-----PMLSISNLTQEQ---VQDYVNKTNSHLPAGKQVE---ISLVNGAKNLVVS 380
Query: 150 MCGH---LFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPR 206
G L+ L+ L + P + +D+ ++ P + +
Sbjct: 381 --GPPQSLY---GLNLTLR----KAKAP---SGLDQSRI-------------PFSERKLK 415
Query: 207 PQGQ---RTEPENSSSCYLLETVFHFCVQFCTSGVAICA 242
+ P +S L+ + V+ A
Sbjct: 416 FSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNA 452
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 29.8 bits (66), Expect = 0.36
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 150 MCGHLFCWPCLHQWLETCPNRQTCPVC 176
+C H F + C+ +WL+T RQ CP+
Sbjct: 83 VCNHAFHFHCISRWLKT---RQVCPLD 106
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 28.5 bits (64), Expect = 0.36
Identities = 13/51 (25%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 136 CNICLDTAKDAVISMCG--------HLFCWPCLHQWLETCPNRQTCPVCKA 178
C IC + + CG H CL WL N C +C
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHR---SCLSTWLTISRNT-ACQICGV 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.2
Length = 98
Score = 29.0 bits (65), Expect = 0.44
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 123 KTDGENDKGQIYD---CNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKA 178
+ E D I D V+ + + + L + QT P ++
Sbjct: 9 QQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL---SDQTDPFNRS 65
Query: 179 AIDKDKVIP 187
+ D++ P
Sbjct: 66 PLTMDQIRP 74
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 29.0 bits (64), Expect = 0.52
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 148 ISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
+C H F + C+ +WL+T RQ CP+
Sbjct: 70 WGVCNHAFHFHCISRWLKT---RQVCPLD 95
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 29.0 bits (64), Expect = 1.5
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 9/47 (19%)
Query: 136 CNICLDTAKDAVISMCG------HLFCWPCLHQWLETCPNRQTCPVC 176
C C +I G +L C C +W R C C
Sbjct: 185 CPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY---VRIKCSHC 228
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 28.6 bits (64), Expect = 1.6
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 195 SKTDPRDKVPPRPQGQRTEPENSSSCYLLE--TVFHFCVQFCTSGVAICAIWGAL 247
+ + + Q + LL+ + C++F +A A++
Sbjct: 159 MQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS 213
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 1.9
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 162 QWLETCPNRQTCPVCKAAIDKDKVIPVYGRG 192
+ TCP CK K++ + G
Sbjct: 13 RRGPNLNIVLTCPECKV--YPPKIVERFSEG 41
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase;
NMR {Homo sapiens} SCOP: g.44.1.1
Length = 60
Score = 26.2 bits (58), Expect = 2.2
Identities = 8/25 (32%), Positives = 8/25 (32%)
Query: 149 SMCGHLFCWPCLHQWLETCPNRQTC 173
C FCW CL W C
Sbjct: 30 QNCKAEFCWVCLGPWEPHGSAWYNC 54
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 27.1 bits (59), Expect = 2.4
Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 14/81 (17%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
C C ++ H C CL L CP+CK +P R
Sbjct: 29 QFCKSCW-FENKGLVECNNHYLCLNCLTLLLSVSNR---CPICK------MPLPTKLRPS 78
Query: 194 SSKTDPRDKVPPRPQGQRTEP 214
++ T P P P
Sbjct: 79 AAPTAP----PTGAADSIRPP 95
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 27.9 bits (63), Expect = 3.7
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 154 LFCWPCLHQWLETCPNRQTCPVC 176
+FC C + PN TCPVC
Sbjct: 20 MFC-GCRADYFGAEPNTHTCPVC 41
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 26.8 bits (59), Expect = 4.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 151 CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
CG++FC C + T +++ VC A
Sbjct: 91 CGNIFCAECSAKNALTPSSKKPVRVCDA 118
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.4 bits (60), Expect = 4.1
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 13 PNRDEGSGDQKKTDGGNDKSQIYDCNICF-DTAKDAVISMCGHLFWLKFFY 62
P + + D ND + F D + L++++FF+
Sbjct: 179 PPNEILFSENNDMDNNNDGVDELNKKCTFWD--AIS------KLYYVQFFF 221
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 25.9 bits (57), Expect = 8.1
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 105 SGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWP 158
S + D GS +K + I + +A G C
Sbjct: 2 GDSMISSATSDTGSAKRKSKKNIRKQ----RMKILFNVVLEAREPGSGRRLCDL 51
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 9.3
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 19/68 (27%)
Query: 180 IDKDKVIPVYGRGGSSKT---------DPRDKVPPRP-----QGQRTEPENSSSCYLLET 225
+ K + + G GS KT PE +LE
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-----VLEM 201
Query: 226 VFHFCVQF 233
+ Q
Sbjct: 202 LQKLLYQI 209
Score = 26.7 bits (58), Expect = 9.9
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 9/36 (25%)
Query: 42 DTAKDAVI--SMCGHLFWLKFFYWPGRGGSEIDPRD 75
D + M +FWL + P
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNL-------KNCNSPET 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.435
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,600,971
Number of extensions: 193715
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 139
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)