RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2200
(248 letters)
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 63.5 bits (154), Expect = 8e-14
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
+I +C ICL+ K+ V + C H+FC C+ + L CP+CK I K +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77
Score = 34.3 bits (78), Expect = 0.003
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 33 QIYDCNICFDTAKDAVISMCGHLFWLKFFYW 63
+I +C IC + K+ V + C H+F
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLK 50
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 60.4 bits (146), Expect = 6e-13
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
C IC + KD I CGHL C CL W E+ Q CP C+ I + I V
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV 76
Score = 30.0 bits (67), Expect = 0.062
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 37 CNICFDTAKDAVISMCGHLF 56
C IC + KD I CGHL
Sbjct: 26 CKICAENDKDVKIEPCGHLM 45
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 58.8 bits (142), Expect = 3e-12
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 113 NRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQT 172
++ S D + C IC D V + C HLFC C+ + L+
Sbjct: 3 SKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSY 60
Query: 173 CPVCKAAIDKDKVIP 187
CP C+ +
Sbjct: 61 CPSCRYPCFPTDLES 75
Score = 32.2 bits (73), Expect = 0.012
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 37 CNICFDTAKDAVISMCGHLF 56
C IC D V + C HLF
Sbjct: 26 CQICEHILADPVETSCKHLF 45
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 51.5 bits (123), Expect = 9e-10
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
C ICL+ + +++ C H FC+ C+ +W+ TCP+CK ++
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIR---QNPTCPLCKVPVES 52
Score = 24.9 bits (54), Expect = 3.3
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 37 CNICFDTAKDAVISM-CGHLF 56
C IC + + +++ C H F
Sbjct: 8 CPICLEDPSNYSMALPCLHAF 28
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 50.3 bits (120), Expect = 2e-09
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
Q C C AK + C H C CL CP+C+A
Sbjct: 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPW 47
Score = 29.5 bits (66), Expect = 0.059
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 33 QIYDCNICFDTAKDAVISMCGHLF 56
Q C C AK + C H
Sbjct: 5 QFLRCQQCQAEAKCPKLLPCLHTL 28
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 46.8 bits (111), Expect = 4e-08
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 135 DCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
+C +CL +D + CGH F C+ WL + TCP+C+ +
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTV 53
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 45.8 bits (108), Expect = 1e-07
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
+ C I L+ KD VI G + + +WL+ +TCP + + + P
Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTP 60
Score = 25.4 bits (55), Expect = 2.1
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 35 YDCNICFDTAKDAVISMCGH 54
+ C I + KD VI G
Sbjct: 9 FRCPISLELMKDPVIVSTGQ 28
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 41.4 bits (96), Expect = 3e-06
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 136 CNICLDTAKDAVISM-----CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
C IC + + CL WL N C +C
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNT-ACQICGV 55
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 41.3 bits (96), Expect = 4e-06
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 135 DCNICLDTAKD-----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
C C T ++++CGH C C+ CP C + K
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV--RGAGNCPECGTPLRKSNF 58
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 40.9 bits (95), Expect = 4e-06
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
C I + V+S +F L Q+ + P+ + ++++ +
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQY---VKDTGNDPITNEPLSIEEIVEIV 54
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 40.1 bits (93), Expect = 8e-06
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 135 DCNICLD----TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
+C +C++ + CG+ C C H+ CP C+ +D
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGL--CPACRKPYPED 52
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 39.8 bits (92), Expect = 2e-05
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
I + ++ I+ G + + + PV ++ + ++++IP
Sbjct: 8 LCGKISFELMREPCITPSGITYDRKDIEEH--LQRVGHFNPVTRSPLTQEQLIPNL 61
Score = 24.0 bits (51), Expect = 6.8
Identities = 7/55 (12%), Positives = 15/55 (27%)
Query: 35 YDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRPQGQRTERE 89
I F+ ++ I+ G + K + +P P +
Sbjct: 8 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 39.4 bits (91), Expect = 3e-05
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 136 CNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
C+ C + ++ + C H+FC C+ + CPVC +
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKI 72
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 36.7 bits (84), Expect = 3e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184
+ +C H F + C+ +WL+T RQ CP+ + K
Sbjct: 41 NQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQK 87
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 36.2 bits (82), Expect = 7e-04
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 147 VISMCGHLFCWPCLHQWLETCPNRQ--TCPVCKAAIDKDKVIPVYGRGGSSKTDPR 200
++ C H F CL CP CK + +G+ ++ P
Sbjct: 57 RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEVFRSGPS 112
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 35.4 bits (81), Expect = 9e-04
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 135 DCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQ-----TCPVCK 177
C +CL I+ C +FC CL Q++E +CP
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 26.8 bits (59), Expect = 0.75
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 136 CNICLDTAKDAVISMC----GHLFCWPCLHQWLET--------CPNRQTCPV 175
C IC + +D C H FC+PC + ++ CP+ + CP+
Sbjct: 11 CTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPL 62
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 26.1 bits (57), Expect = 0.93
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ-TCPVCKAAIDKDK 184
C +C D + C + CL+ L PN + CP C K K
Sbjct: 12 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 26.1 bits (57), Expect = 1.3
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 162 QWLETCPNRQTCPVCKAAIDKD 183
L P C C +
Sbjct: 10 GVLMRDPKFLWCAQCSFGFIYE 31
Score = 24.2 bits (52), Expect = 5.5
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 151 CGHLFCWPCLHQW 163
C FC C QW
Sbjct: 42 CHQTFCVRCKRQW 54
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 27.6 bits (61), Expect = 1.3
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 9/47 (19%)
Query: 136 CNICLDTAKDAVISMCG------HLFCWPCLHQWLETCPNRQTCPVC 176
C C +I G +L C C +W R C C
Sbjct: 167 CPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY---VRIKCSHC 210
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 26.3 bits (57), Expect = 1.4
Identities = 4/43 (9%), Positives = 8/43 (18%), Gaps = 1/43 (2%)
Query: 136 CNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCK 177
I D V+ + + L +
Sbjct: 25 DPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 24.8 bits (54), Expect = 2.4
Identities = 8/26 (30%), Positives = 8/26 (30%)
Query: 149 SMCGHLFCWPCLHQWLETCPNRQTCP 174
C FCW CL W C
Sbjct: 30 QNCKAEFCWVCLGPWEPHGSAWYNCN 55
>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 139
Score = 25.6 bits (55), Expect = 3.9
Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 2/83 (2%)
Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
++K T + + D I + + + + P L W+ T V
Sbjct: 56 TNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPT--VSAL 113
Query: 179 AIDKDKVIPVYGRGGSSKTDPRD 201
+ + + D
Sbjct: 114 LTSEKDWQGFLELYLQNSPEACD 136
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 145
Score = 25.4 bits (55), Expect = 4.8
Identities = 6/34 (17%), Positives = 8/34 (23%), Gaps = 4/34 (11%)
Query: 154 LFCWPCLHQWLETCPNRQTCPVCKAAI-DKDKVI 186
P L W C + +KV
Sbjct: 103 EEVAPRLAAWARRCGRI---DSVVKHLPSPEKVY 133
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 23.5 bits (50), Expect = 7.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 151 CGHLFCWPCLHQWLETCPNRQTCPVCK 177
CG++FC C + T +++ VC
Sbjct: 30 CGNIFCAECSAKNALTPSSKKPVRVCD 56
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 23.4 bits (50), Expect = 9.1
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ-TCPVCKAAIDKDK 184
C +C + + C F C L+ P + +C +C D +
Sbjct: 10 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.435
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 918,354
Number of extensions: 40599
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 42
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)