BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2201
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 67.4 bits (163), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAG 58
E L DP + + + VV+ + HE +HQWFG+LVT A WN WLNE FA++ EY G
Sbjct: 341 ENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLG 398
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 49 AFATFFEYAGTHWVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKW 108
A F A +W E L P + +V +AHE +HQWFG+L+T W
Sbjct: 322 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWW 381
Query: 109 DYTWLKESFATF 120
+ WL E FA++
Sbjct: 382 NDLWLNEGFASY 393
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 67.4 bits (163), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAG 58
E L DP + + + VV+ + HE +HQWFG+LVT A WN WLNE FA++ EY G
Sbjct: 298 ENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLG 355
Score = 48.1 bits (113), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 49 AFATFFEYAGTHWVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKW 108
A F A +W E L P + +V +AHE +HQWFG+L+T W
Sbjct: 279 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWW 338
Query: 109 DYTWLKESFATF 120
+ WL E FA++
Sbjct: 339 NDLWLNEGFASY 350
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 67.4 bits (163), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAG 58
E L DP + + + VV+ + HE +HQWFG+LVT A WN WLNE FA++ EY G
Sbjct: 297 ENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLG 354
Score = 48.1 bits (113), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 49 AFATFFEYAGTHWVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKW 108
A F A +W E L P + +V +AHE +HQWFG+L+T W
Sbjct: 278 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWW 337
Query: 109 DYTWLKESFATF 120
+ WL E FA++
Sbjct: 338 NDLWLNEGFASY 349
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 65.9 bits (159), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAG 58
E L DP + + + VV+ + H+ +HQWFG+LVT A WN WLNE FA++ EY G
Sbjct: 297 ENALLFDPQSSSISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLG 354
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 49 AFATFFEYAGTHWVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKW 108
A F A +W E L P + +V +AH+ +HQWFG+L+T W
Sbjct: 278 ALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLAHQWFGNLVTLAWW 337
Query: 109 DYTWLKESFATF 120
+ WL E FA++
Sbjct: 338 NDLWLNEGFASY 349
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
E L DP + + + VV+ + HE +HQWFG+LVT WN WLNE FA++ EY G
Sbjct: 300 ENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGAD 359
Query: 61 WVR 63
+
Sbjct: 360 YAE 362
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 68 EACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATF 120
E L P ++ +V +AHE +HQWFG+L+T W+ WL E FA++
Sbjct: 300 ENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASY 352
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 59.7 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEY 56
+ + HE +HQWFGDLVT WN WLNE+FATF Y
Sbjct: 261 TVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSY 296
Score = 58.2 bits (139), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 85 NIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVSWEW 134
N +AHE +HQWFGDL+T W+ WL ESFATF + +MD + EW
Sbjct: 258 NSATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMS-YKTMDTLFPEW 306
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEY 56
+ + HE +HQWFGDLVT WN WLNE+FATF Y
Sbjct: 261 NVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSY 296
Score = 58.5 bits (140), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 85 NIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVSWEW 134
N +AHE +HQWFGDL+T W+ WL ESFATF + +MD + EW
Sbjct: 258 NSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMS-YKTMDTLFPEW 306
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEY 56
E L D ++ + D+ TV HE +HQWFG+LVT WN WLNE FA F E+
Sbjct: 293 ESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEF 348
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 49 AFATFFEYAGTHWVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKW 108
A F A +W E+ L + A+ L+I TVAHE +HQWFG+L+T W
Sbjct: 274 AIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWW 333
Query: 109 DYTWLKESFATFF 121
+ WL E FA F
Sbjct: 334 NDLWLNEGFAKFM 346
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYA 57
E L D ++ + + TV HE +HQWFG+LVT WN WLNE FA F E+
Sbjct: 335 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFV 391
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 49 AFATFFEYAGTHWVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKW 108
A F A +W E+ L + A+ L I TVAHE +HQWFG+L+T W
Sbjct: 316 AIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWW 375
Query: 109 DYTWLKESFATFF 121
+ WL E FA F
Sbjct: 376 NDLWLNEGFAKFM 388
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYA 57
E L D ++ + + TV HE +HQWFG+LVT WN WLNE FA F E+
Sbjct: 284 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFV 340
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 49 AFATFFEYAGTHWVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKW 108
A F A +W E+ L + A+ L I TVAHE +HQWFG+L+T W
Sbjct: 265 AIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWW 324
Query: 109 DYTWLKESFATFF 121
+ WL E FA F
Sbjct: 325 NDLWLNEGFAKFM 337
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
E L DP + + V + HE +HQWFG+LVT WN WLNE FA + E
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYME 400
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
+V ++ P + +T S +F ++F D+ P + A F A +
Sbjct: 283 KVSIYASPDKRNQTHYALQASLKLLDFYEKYF-DIYYPLSKLDLI---AIPDFAPGAMEN 338
Query: 61 WVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATF 120
W E L P A+ L + +AHE +HQWFG+L+T W+ WL E FA +
Sbjct: 339 WGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKY 398
Query: 121 F 121
Sbjct: 399 M 399
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
E L DP + + V + HE +HQWFG+LVT WN WL E FA + E
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYME 400
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
+V ++ P + +T S +F ++F D+ P + A F A +
Sbjct: 283 KVSIYASPDKRNQTHYALQASLKLLDFYEKYF-DIYYPLSKLDLI---AIPDFAPGAMEN 338
Query: 61 WVRRESAEACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATF 120
W E L P A+ L + +AHE +HQWFG+L+T W+ WLKE FA +
Sbjct: 339 WGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKY 398
Query: 121 F 121
Sbjct: 399 M 399
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 19 VVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+V+ + HE +H W G+LVT +W WLNE F ++ E
Sbjct: 294 LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVE 330
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 72 FSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATF-----FGCFYS 126
F P+ V ++L V +AHE +H W G+L+T W WL E F ++ +
Sbjct: 282 FITPTVVAGDKSL--VNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFG 339
Query: 127 MDVVSWEWCLTRECVQRRVLEL 148
D E L + + +LEL
Sbjct: 340 TDRAVMEQALGAQDLNAEILEL 361
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE SH W G+LVT TW+ WLNE + E
Sbjct: 292 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLE 326
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 247 DLGGPYVWGQYDL-LVLPPSFPYGGMQ-------NPCLTFVTPTLLAGDKSLSNV--IAH 296
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
E SH W G+L+T WD+ WL E +
Sbjct: 297 EISHSWTGNLVTNKTWDHFWLNEGHTVYL 325
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE SH W G+LVT TW+ WLNE + E
Sbjct: 292 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLE 326
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 247 DLGGPYVWGQYDL-LVLPPSFPYGGME-------NPCLTFVTPTLLAGDKSLSNV--IAH 296
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
E SH W G+L+T WD+ WL E +
Sbjct: 297 EISHSWTGNLVTNKTWDHFWLNEGHTVYL 325
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE SH W G+LVT TW+ WLNE + E
Sbjct: 291 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLE 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 246 DLGGPYVWGQYDL-LVLPPSFPYGGME-------NPCLTFVTPTLLAGDKSLSNV--IAH 295
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
E SH W G+L+T WD+ WL E +
Sbjct: 296 EISHSWTGNLVTNKTWDHFWLNEGHTVYL 324
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE SH W G+LVT TW+ WLNE + E
Sbjct: 297 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLE 331
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 252 DLGGPYVWGQYDL-LVLPPSFPYGGME-------NPCLTFVTPTLLAGDKSLSNV--IAH 301
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
E SH W G+L+T WD+ WL E +
Sbjct: 302 EISHSWTGNLVTNKTWDHFWLNEGHTVYL 330
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE SH W G+LVT TW+ WLNE + E
Sbjct: 291 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLE 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 246 DLGGPYVWGQYDL-LVLPPSFPYGGME-------NPCLTFVTPTLLAGDKSLSNV--IAH 295
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
E SH W G+L+T WD+ WL E +
Sbjct: 296 EISHSWTGNLVTNKTWDHFWLNEGHTVYL 324
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE SH W G+LVT TW+ WLNE + E
Sbjct: 291 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLE 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 246 DLGGPYVWGQYDL-LVLPPSFPYGGME-------NPCLTFVTPTLLAGDKSLSNV--IAH 295
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
E SH W G+L+T WD+ WL E +
Sbjct: 296 EISHSWTGNLVTNKTWDHFWLNEGHTVYL 324
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE SH W G+LVT TW+ WLNE + E
Sbjct: 289 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLE 323
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 244 DLGGPYVWGQYDL-LVLPPSFPYGGME-------NPCLTFVTPTLLAGDKSLSNV--IAH 293
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
E SH W G+L+T WD+ WL E +
Sbjct: 294 EISHSWTGNLVTNKTWDHFWLNEGHTVYL 322
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 20 VSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE +H W G+LVT +WN WLNE + + E
Sbjct: 296 IDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE 331
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 87 VGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFF 121
+ +AHE +H W G+L+T W++ WL E + +
Sbjct: 296 IDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYL 330
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 20 VSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + HE +H W G+LVT +WN WLNE + + E
Sbjct: 296 IDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE 331
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 87 VGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFF 121
+ +AHE +H W G+L+T W++ WL E + +
Sbjct: 296 IDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYL 330
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 21 STVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+ + H+ SH W G+LVT TW+ WLNE + E
Sbjct: 297 NVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLE 331
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 34 DLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAEACL-FSIPSEVKAAQTLNIVGTVAH 92
DL P W L F Y G CL F P+ + ++L+ V +AH
Sbjct: 252 DLGGPYVWGQYDL-LVLPPSFPYGGME-------NPCLTFVTPTLLAGDKSLSNV--IAH 301
Query: 93 EFSHQWFGDLLTPYKWDYTWLKESFATFF 121
+ SH W G+L+T WD+ WL E +
Sbjct: 302 QISHSWTGNLVTNKTWDHFWLNEGHTVYL 330
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 3 YLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATF 53
++ D T + + S V HE+ H W G+ VT W L E F
Sbjct: 271 FVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF 321
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 86 IVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVS 131
I V HE+ H W G+ +T W LKE F +S D S
Sbjct: 287 IESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRAS 332
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 84 LNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVS 131
L+I + HE+ H W G+ +T W LKE F +S D+ S
Sbjct: 310 LDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGS 357
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 18 DVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATF 53
D+ + HE+ H W G+ VT W L E F
Sbjct: 311 DIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF 346
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 31.2 bits (69), Expect = 0.59, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 84 LNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVS 131
L+I + HE+ H W G+ +T W LKE F +S D+ S
Sbjct: 289 LDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGS 336
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 18 DVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATF 53
D+ + HE+ H W G+ VT W L E F
Sbjct: 290 DIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF 325
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 31.2 bits (69), Expect = 0.59, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 84 LNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVS 131
L+I + HE+ H W G+ +T W LKE F +S D+ S
Sbjct: 310 LDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGS 357
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 18 DVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATF 53
D+ + HE+ H W G+ VT W L E F
Sbjct: 311 DIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF 346
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 201 CVDTALGLLSAGLHRKRHFVTLWIREACLFSIPSEVKAAQTLN 243
+D A GLL G H + L ++EA + P+E +A +TL
Sbjct: 387 ALDLAKGLLELGFHPPTVYFPLIVKEALMVE-PTETEAKETLE 428
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 76 SEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKE 115
++V+ + +G +HE + W PY W Y +LKE
Sbjct: 50 TDVRKREIAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKE 89
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 11 TKKTRID----DVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+KK ID +++ V HE+ HQ+ G+ VT W L E E
Sbjct: 283 SKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRE 331
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 11 TKKTRID----DVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+KK ID +++ V HE+ HQ+ G+ VT W L E E
Sbjct: 284 SKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRE 332
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 11 TKKTRID----DVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+KK ID +++ V HE+ HQ+ G+ VT W L E E
Sbjct: 284 SKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRE 332
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 11 TKKTRID----DVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFE 55
+KK ID +++ V HE+ HQ+ G+ VT W L E E
Sbjct: 283 SKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRE 331
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 27.3 bits (59), Expect = 8.4, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 13 KTRIDDVVSTVTHEFSHQ----WFGDLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAE 68
K ++ ++ + +EF+ + FG+ + W F +Y W +
Sbjct: 429 KEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQW-------FIDYGNPEWKEKARKA 481
Query: 69 ACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESF--ATFFGCFYS 126
I E + AQ I+ + + + G L TP WD W+ ES +T + +Y+
Sbjct: 482 LERMKILPETRRAQFEAIIDWLDKKACARKIG-LGTPLPWDPEWVIESLSDSTIYMAYYT 540
Query: 127 M 127
+
Sbjct: 541 I 541
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 13 KTRIDDVVSTVTHEFSHQ----WFGDLVTPATWNSAWLNEAFATFFEYAGTHWVRRESAE 68
K ++ ++ + +EF+ + FG+ + W F +Y W +
Sbjct: 429 KEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQW-------FIDYGNPEWKEKARKA 481
Query: 69 ACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESF--ATFFGCFYS 126
I E + AQ I+ + + + G L TP WD W+ ES +T + +Y+
Sbjct: 482 LERMKILPETRRAQFEAIIDWLDKKACARKIG-LGTPLPWDPEWVIESLSDSTIYMAYYT 540
Query: 127 M 127
+
Sbjct: 541 I 541
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.134 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,871,772
Number of Sequences: 62578
Number of extensions: 315401
Number of successful extensions: 743
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 79
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)