RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2201
(255 letters)
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 93.7 bits (233), Expect = 7e-22
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
E L D ++ + + TV HE +HQWFG+LVT WN WLNE FA F E+
Sbjct: 284 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVS 343
Query: 61 WV 62
Sbjct: 344 VT 345
Score = 78.3 bits (193), Expect = 1e-16
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 68 EACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSM 127
E+ L + A+ L I TVAHE +HQWFG+L+T W+ WL E FA F F S+
Sbjct: 284 ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFME-FVSV 342
Query: 128 DVVSWEW 134
V E
Sbjct: 343 SVTHPEL 349
Score = 29.4 bits (66), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 REACLFSIPSEVKAAQTLNIVGTVAHEFSHQ 255
RE+ L + A+ L I TVAHE +HQ
Sbjct: 283 RESALLFDAEKSSASSKLGITMTVAHELAHQ 313
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 93.3 bits (232), Expect = 9e-22
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
E L DP + + V + HE +HQWFG+LVT WN WLNE FA + E +
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVN 405
Query: 61 WV 62
Sbjct: 406 AT 407
Score = 80.2 bits (198), Expect = 2e-17
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 68 EACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSM 127
E L P A+ L + +AHE +HQWFG+L+T W+ WL E FA + ++
Sbjct: 346 ETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYME-LIAV 404
Query: 128 DVVSWEW 134
+ E
Sbjct: 405 NATYPEL 411
Score = 29.0 bits (65), Expect = 1.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 225 REACLFSIPSEVKAAQTLNIVGTVAHEFSHQ 255
RE L P A+ L + +AHE +HQ
Sbjct: 345 RETSLLFDPKTSSASDKLWVTRVIAHELAHQ 375
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 89.0 bits (221), Expect = 2e-20
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
E+Y+ + + + + + + HE +HQWFGDLVT WN WLNE+FATF Y
Sbjct: 242 EIYMDIAENSAVTVKRN-SANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMD 300
Query: 61 WV 62
+
Sbjct: 301 TL 302
Score = 76.2 bits (188), Expect = 4e-16
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 85 NIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVSWEW 134
N +AHE +HQWFGDL+T W+ WL ESFATF + +MD + EW
Sbjct: 258 NSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMS-YKTMDTLFPEW 306
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 REACLFSIPSEVKAAQTLNIVGTVAHEFSHQ 255
RE + I N +AHE +HQ
Sbjct: 241 REIYMD-IAENSAVTVKRNSANVIAHEIAHQ 270
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 75.6 bits (186), Expect = 8e-16
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
L D S + + HE +H W G+LVT +WN WLNE + + E
Sbjct: 286 PTLLAHDRS---------NIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIG 336
Query: 61 WVRRE 65
+ E
Sbjct: 337 AIHGE 341
Score = 62.9 bits (153), Expect = 2e-11
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 85 NIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVSWEW 134
+ + +AHE +H W G+L+T W++ WL E + + + + E
Sbjct: 294 SNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE-RRIIGAIHGEP 342
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 74.4 bits (183), Expect = 2e-15
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
L D S + + + H+ SH W G+LVT TW+ WLNE + E
Sbjct: 286 PTLLAGDKS---------LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICG 336
Score = 62.5 bits (152), Expect = 2e-11
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 85 NIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVSWEW 134
++ +AH+ SH W G+L+T WD+ WL E + + + E
Sbjct: 294 SLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLE-RHICGRLFGEK 342
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 74.0 bits (182), Expect = 3e-15
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 19 VVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
+V+ + HE +H W G+LVT +W WLNE F ++ E
Sbjct: 294 LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIME 335
Score = 64.4 bits (157), Expect = 4e-12
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 85 NIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGC-----FYSMDVVSWEWCLTRE 139
++V +AHE +H W G+L+T W WL E F ++ + D E L +
Sbjct: 293 SLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQ 352
Query: 140 CVQRRVLELHIDRGRH 155
+ +LEL +
Sbjct: 353 DLNAEILELDASDTQL 368
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 59.9 bits (145), Expect = 1e-10
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGT- 59
L + +++ V HE+ HQ+ G+ VT W L E E +
Sbjct: 277 ANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSE 336
Query: 60 ----HWVRRE 65
R
Sbjct: 337 EMTKTVTTRL 346
Score = 54.9 bits (132), Expect = 9e-09
Identities = 16/87 (18%), Positives = 27/87 (31%)
Query: 68 EACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSM 127
L + I+ V HE+ HQ+ G+ +T W LKE +S
Sbjct: 277 ANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSE 336
Query: 128 DVVSWEWCLTRECVQRRVLELHIDRGR 154
++ R ++ D
Sbjct: 337 EMTKTVTTRLSHVDLLRSVQFLEDSSP 363
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 57.2 bits (138), Expect = 1e-09
Identities = 19/91 (20%), Positives = 29/91 (31%)
Query: 68 EACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSM 127
+ + L+I + HE+ H W G+ +T W LKE F +S
Sbjct: 294 SKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSS 353
Query: 128 DVVSWEWCLTRECVQRRVLELHIDRGRHKRE 158
D+ S R L+ D
Sbjct: 354 DLGSRAVNRINNVRTMRGLQFAEDASPMAHP 384
Score = 54.9 bits (132), Expect = 7e-09
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEY 56
Y+ D+ + HE+ H W G+ VT W L E F +
Sbjct: 294 SKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQ 349
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 56.8 bits (137), Expect = 2e-09
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGT- 59
++ D T + + S V HE+ H W G+ VT W L E F + +
Sbjct: 269 TKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSG 328
Query: 60 ----HWVRRES 66
VRR
Sbjct: 329 DRASRAVRRIE 339
Score = 56.1 bits (135), Expect = 3e-09
Identities = 19/74 (25%), Positives = 24/74 (32%)
Query: 85 NIVGTVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVSWEWCLTRECVQRR 144
I V HE+ H W G+ +T W LKE F +S D S R
Sbjct: 286 GIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLR 345
Query: 145 VLELHIDRGRHKRE 158
+ D G
Sbjct: 346 QHQFPEDAGPTAHP 359
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 51/179 (28%)
Query: 56 YAGTHWVRRESAEACL--FSIP-SEVKAAQTLNIVGTVAHEFSHQWFGDLLTPYKWDYTW 112
Y +R+ A + L IP SE K FS++ F + +P+
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLK------------FSNR-FLPVASPFHSHL-- 431
Query: 113 LKESFATFFGCFYSMDVVSWEWCLTRECVQRRVLELHI------DRGRHKRENKHFCLRF 166
L + D+V + ++ I D G R
Sbjct: 432 LVPASDLINK-----DLVKNNVSFNAK-------DIQIPVYDTFD-GSDLRVLSGSISER 478
Query: 167 SKRTYTTMP--WTAV--STTPHIVD----SRRSMGSL-----NGRGLCVDTALGLLSAG 212
+P W HI+D +G L +G G+ V A G L
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA-GTLDIN 536
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 52/188 (27%)
Query: 71 LFSIPSEVKAAQTLNIVGTV---AHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSM 127
+ V TL + T+ E ++ ++L +Y +L T
Sbjct: 54 IIMSKDAVS--GTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKT-------- 100
Query: 128 DVVSWEWCLTRECVQR-RVLELHID-RGRHKRENKHFCLRFSKRTYTTMPWTAVSTTPHI 185
E Q + ++I+ R R +N+ F+K VS
Sbjct: 101 -----------EQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYN--------VSRLQPY 137
Query: 186 VDSRRSMGSLN-GRGLCVD----------TALGLLSAGLHRKRHFVTLWIREACLFSIPS 234
+ R+++ L + + +D LS + K F W+ S +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 235 EVKAAQTL 242
++ Q L
Sbjct: 198 VLEMLQKL 205
Score = 31.4 bits (70), Expect = 0.31
Identities = 24/170 (14%), Positives = 47/170 (27%), Gaps = 54/170 (31%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
+V FL + T +D T+T + +L+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----------LKYLDCRP---------- 315
Query: 61 WVRRESAEACLFSIPSEVKAA--QTLNIVGTVAHEFSHQW-----------------FGD 101
+P EV + L+I+ + W +
Sbjct: 316 -----------QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 102 LLTPYKWDYTWLKESFATF-FGCFYSMDVVSWEWC-LTRECVQRRVLELH 149
+L P +Y + + + F ++S W + + V V +LH
Sbjct: 365 VLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 33.8 bits (77), Expect = 0.061
Identities = 10/60 (16%), Positives = 18/60 (30%)
Query: 2 VYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTHW 61
V FL+ + + I +V ++ S + A A Y G +
Sbjct: 692 VSCFLNDDKAAEDTIKRLVMREITLLRASTNDHILNRLKIPSQLIFNAQALKDRYEGNYL 751
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 33.1 bits (74), Expect = 0.088
Identities = 11/80 (13%), Positives = 18/80 (22%), Gaps = 11/80 (13%)
Query: 1 EVYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFG-----------DLVTPATWNSAWLNEA 49
L +S HE+ H W L + W E
Sbjct: 249 RKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEG 308
Query: 50 FATFFEYAGTHWVRRESAEA 69
++F+ H +
Sbjct: 309 MTSYFDDYLLHTSGIIDEKR 328
Score = 31.9 bits (71), Expect = 0.20
Identities = 10/66 (15%), Positives = 15/66 (22%), Gaps = 11/66 (16%)
Query: 68 EACLFSIPSEVKAAQTLNIVGTVAHEFSHQWFG-----------DLLTPYKWDYTWLKES 116
L S + HE+ H W L + W E
Sbjct: 249 RKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEG 308
Query: 117 FATFFG 122
++F
Sbjct: 309 MTSYFD 314
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 30.8 bits (70), Expect = 0.40
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 54 FEYAGTHWVRRESAEACL--FSIPSEVKAAQTLNI--VGTVAHEF--SHQWFGDLLTPYK 107
F Y V E F S V A+ L++ +GT+AHE+ +HQ G L +
Sbjct: 184 FSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLMAHQQLGPRLIDSQ 243
Query: 108 WDY--TWLKE 115
W++E
Sbjct: 244 SAALDCWVRE 253
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 29.5 bits (66), Expect = 1.0
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 54 FEYAGTHWVRRESAEACL--FSIPSEVKAAQTLNI--VGTVAHEF 94
+ W E F+ S V A ++ VGT AHE
Sbjct: 207 HSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSDLEAVGTNAHEL 251
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 27.8 bits (62), Expect = 4.3
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 72 FSIPSEVKAAQTLNI--VGTVAHEFSHQWFGDLLTPYK 107
S + A+ + +GTVAHE+ + Y
Sbjct: 222 LLGTSNILFAKKYGVKPIGTVAHEWV-MGVASISEDYL 258
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB:
3bg0_B 3iko_B
Length = 442
Score = 27.4 bits (60), Expect = 4.5
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 2 VYLFLDPSRTKKTRIDDVVSTVTHEFSHQWFGDLVTPATWNSAWLNEAFATFFEYAGTH 60
V FL+ + + I +V ++ S + A A Y G +
Sbjct: 383 VSCFLNDDKAAEDTIKRLVMREITLLRASTNDHILNRLKIPSQLIFNAQALKDRYEGNY 441
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 27.3 bits (61), Expect = 4.7
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 72 FSIPSEVKAAQTLNI--VGTVAHEFSHQWFGDLLTPYK 107
S A+TL + VGT AHE+ Q +
Sbjct: 199 LVGTSNYDLARTLALAPVGTQAHEWF-QAHQQISPTLA 235
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 27.5 bits (62), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 204 TALGLLSAGLHRKRHFVTLWIREA 227
TAL L+ L RK V LW E+
Sbjct: 42 TALALV---LARKGQKVRLWSYES 62
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase;
HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6
c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A*
1n1g_A*
Length = 366
Score = 27.1 bits (61), Expect = 6.0
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 204 TALGLLSAGLHRKRHFVTLWIREA 227
TAL ++ L +K V +W
Sbjct: 28 TALAMV---LSKKCREVCVWHMNE 48
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 27.1 bits (61), Expect = 6.0
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 204 TALGLLSAGLHRKRHFVTLWIREA 227
T + LH V LW R
Sbjct: 27 TVFAQM---LHENGEEVILWARRK 47
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD;
GYF-domain, thioredoxin-like, spliceosomal proteins,
transla immune system complex; 2.35A {Homo sapiens}
SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Length = 86
Score = 25.4 bits (55), Expect = 6.6
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 89 TVAHEFSHQWFGDLLTPYKWDYTWLKESFATFFGCFYSMDVVSW 132
T + GD L W+Y W A +G F S + +W
Sbjct: 9 TPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTW 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.134 0.448
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,010,106
Number of extensions: 224324
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 45
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.1 bits)