BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2203
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 105 bits (263), Expect = 6e-23, Method: Composition-based stats.
Identities = 49/61 (80%), Positives = 54/61 (88%), Gaps = 2/61 (3%)
Query: 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCG 69
PP VLCLLNMVTPDEL+DE+EYEDI EDIKEEC KYG+VRS+EIPRPIE V+VPGCG
Sbjct: 315 PPTE--VLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCG 372
Query: 70 K 70
K
Sbjct: 373 K 373
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
+LCL+NMVT DELK +DEYE+I ED+++EC+KYGIVRSLEIPRP E+ VPG GK
Sbjct: 399 ILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVGK 453
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 48/55 (87%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
+LCL+NMVT DEL+ +++YE+I ED++EEC+KYGIVRSLEIPRP ++ VPG GK
Sbjct: 390 ILCLMNMVTEDELRSDEDYEEILEDVREECSKYGIVRSLEIPRPYDDHPVPGVGK 444
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 51/55 (92%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
VLCL+NMV P+EL D++EYE+I ED+++EC+KYG+V+S+EIPRP++ V+VPGCGK
Sbjct: 377 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 51/55 (92%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
VLCL+NMV P+EL D++EYE+I ED+++EC+KYG+V+S+EIPRP++ V+VPGCGK
Sbjct: 377 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIEN-VDVPGCGK 70
L VLCL +VT DEL D+D+Y+DI ED++ EC K+G + ++ IPRP N V PG GK
Sbjct: 451 LATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGK 510
Query: 71 ATL 73
L
Sbjct: 511 VFL 513
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1
PE=1 SV=1
Length = 419
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
VL LLN++ D L++EDEYED+ ED+KEEC KYG V SL +P+ EN PG G+
Sbjct: 322 VLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPK--EN---PGRGQ 371
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1
SV=3
Length = 419
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
VL LLN++ D L++EDEYED+ ED+KEEC KYG V SL +P+ EN PG G+
Sbjct: 322 VLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPK--EN---PGRGQ 371
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVD-VPGCGKATL 73
+V+CL +VT DEL+D++EY DI ED+++E K+G + ++ IPRP N + V G GK L
Sbjct: 472 TVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFL 531
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP-IENVDVPGCGKATL 73
V+CL +V+PDEL+D++EYEDI +D++EE +YG + + IPRP V G G+ L
Sbjct: 474 VVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFL 532
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVD-VPG 67
V L V+CL +VT DELKD++EYEDI ED++ E KYG + + IPRP + + V G
Sbjct: 434 VGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSG 493
Query: 68 CGKATL 73
GK L
Sbjct: 494 VGKVFL 499
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVD-VPGCGK 70
L VL L +++ DEL D+++Y+DI ED++ EC K+G + ++ IPRP N + PG GK
Sbjct: 469 LATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGK 528
Query: 71 ATL 73
L
Sbjct: 529 VFL 531
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP-IENVDVPG 67
V L V+CL +V+ DELKD++EYEDI ED++ E KYG + + IPRP + V G
Sbjct: 441 VGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAG 500
Query: 68 CGKATL 73
GK L
Sbjct: 501 VGKVFL 506
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVD-VPGCGKATL 73
++CL +VT D+L+D++EY +I ED+++E K+G + ++ IPRP + D PG GK L
Sbjct: 489 IVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFL 547
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60
VL L N++T DE+ D EYEDI E +K + + YG + ++IPR I
Sbjct: 419 VLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSI 463
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKY 48
L V+CL +V+ D+L+D++EY DI ED+ E +KY
Sbjct: 502 LTTKVVCLTQVVSADDLRDDEEYNDILEDMTLEGHKY 538
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 7 RLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI--PRPIENVD 64
RL+ P+ V+ L NMV P ED E + E+I+EEC+K+G V + I + EN D
Sbjct: 529 RLMRPVDSRVIILRNMVGP-----EDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENED 583
>sp|Q58294|RFCL_METJA Replication factor C large subunit OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rfcL PE=1 SV=1
Length = 516
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 25 PDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73
P LKD +E + E +K Y E P+PI V PGCGK TL
Sbjct: 10 PKSLKDVAGHEKVKEKLKTWIESY---LKGETPKPILLVGPPGCGKTTL 55
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 9/45 (20%)
Query: 21 NMVTP---------DELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+M+TP D K +D +ED EDI EE NK+G V SL +
Sbjct: 56 DMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNV 100
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECN-KYGIV 51
PP+R L NM P E + +++ +D+KEEC+ KYG V
Sbjct: 501 PPIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKV 543
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+V+ L NMV P+++ D+ E E + EEC KYG V + I
Sbjct: 419 TVMVLRNMVGPEDIDDDLEGE-----VMEECGKYGAVNRVII 455
>sp|P23357|RS10_HALMA 30S ribosomal protein S10 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps10 PE=3
SV=3
Length = 103
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 32 DEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVP------GCGKAT 72
++ +DIC D++E NK G+ S +P P + ++VP G G AT
Sbjct: 15 EDLDDICADVREIANKTGVELSGPVPLPTKTLEVPSRKSPDGEGTAT 61
>sp|Q3IUD7|RS10_NATPD 30S ribosomal protein S10 OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rps10 PE=3 SV=1
Length = 102
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 32 DEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVP------GCGKAT 72
++ +DIC+D++E +K G+ S +P P + +++P G G AT
Sbjct: 14 EDLDDICDDVREIADKTGVTLSGPVPLPTKTLEIPARKSPDGEGTAT 60
>sp|Q5RCY1|UHMK1_PONAB Serine/threonine-protein kinase Kist OS=Pongo abelii GN=UHMK1 PE=2
SV=1
Length = 419
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
VL LLN++ D L++E+EYED+ ED+KEEC KYG V SL +P+ EN PG G+
Sbjct: 322 VLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPK--EN---PGRGQ 371
>sp|Q8TAS1|UHMK1_HUMAN Serine/threonine-protein kinase Kist OS=Homo sapiens GN=UHMK1 PE=1
SV=2
Length = 419
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70
VL LLN++ D L++E+EYED+ ED+KEEC KYG V SL +P+ EN PG G+
Sbjct: 322 VLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPK--EN---PGRGQ 371
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 9/45 (20%)
Query: 21 NMVTP---------DELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+M+TP D K + ++ED EDI EE +KYG + SL +
Sbjct: 56 DMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHV 100
>sp|Q7V1M1|ACSF_PROMP Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=acsF PE=3 SV=1
Length = 390
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVD 64
+EDE E ICE+ +++ N++ VR+ E + +D
Sbjct: 46 NEDELEAICEEFRKDYNRHHFVRNKEFEGAADKID 80
>sp|A8G4Z1|ACSF_PROM2 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Prochlorococcus marinus (strain MIT 9215) GN=acsF
PE=3 SV=1
Length = 390
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVD 64
+EDE E ICE+ +++ N++ VR+ E + +D
Sbjct: 46 NEDELEAICEEFRKDYNRHHFVRNKEFEGAADKLD 80
>sp|Q8CNR4|PRSA_STAES Foldase protein PrsA OS=Staphylococcus epidermidis (strain ATCC
12228) GN=prsA PE=3 SV=1
Length = 325
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG 49
FS++ LN V D+ KD+ + +DI +DIK+E +YG
Sbjct: 60 FSIV--LNKVLADKYKDKVDTKDIDKDIKKEEKQYG 93
>sp|P26019|DPOLA_DROME DNA polymerase alpha catalytic subunit OS=Drosophila melanogaster
GN=DNApol-alpha180 PE=1 SV=2
Length = 1488
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 26 DELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73
D +DEDEY D ED K+ K G+ + + RP EN + P GKA++
Sbjct: 81 DFFEDEDEYSDGEEDRKDSKKKKGVAPNSK-KRPREN-EKPVTGKASI 126
>sp|A6UWR5|RFCL_META3 Replication factor C large subunit OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rfcL PE=3 SV=1
Length = 474
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 55 EIPRPIENVDVPGCGKATL 73
EIP+P+ V PGCGK TL
Sbjct: 36 EIPKPVLLVGPPGCGKTTL 54
>sp|Q5HN96|PRSA_STAEQ Foldase protein PrsA OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=prsA PE=3 SV=1
Length = 325
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG 49
FS++ LN V D+ KD+ + +DI +DIK+E +YG
Sbjct: 60 FSIV--LNKVLADKYKDKVDTKDIDKDIKKEEKQYG 93
>sp|O28881|LIVG_ARCFU Probable branched-chain amino acid transport ATP-binding protein
LivG OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=livG PE=3
SV=2
Length = 257
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 26 DELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDV 65
DE K E +DI E ++ GIVR+ +IP+P++ + V
Sbjct: 56 DEGKVFFEGKDITNKPPHEISRLGIVRTFQIPQPLKKMTV 95
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+V+ L NMV P ++ D+ E E + EEC K+G V + I
Sbjct: 433 TVMVLRNMVDPKDIDDDLEGE-----VTEECGKFGAVNRVII 469
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+V+ L NMV P ++ D+ E E + EEC K+G V + I
Sbjct: 467 TVMVLRNMVDPKDIDDDLEGE-----VTEECGKFGAVNRVII 503
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+V+ L NMV P ++ D+ E E + EEC K+G V + I
Sbjct: 467 TVMVLRNMVDPKDIDDDLEGE-----VTEECGKFGAVNRVII 503
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+V+ L NMV P ++ D+ E E + EEC K+G V + I
Sbjct: 461 TVMVLRNMVDPKDIDDDLEGE-----VTEECGKFGAVNRVII 497
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+V+ L NMV P ++ D+ E E + EEC K+G V + I
Sbjct: 462 TVMVLRNMVDPKDIDDDLEGE-----VTEECGKFGAVNRVII 498
>sp|B9LRD9|RS10_HALLT 30S ribosomal protein S10 OS=Halorubrum lacusprofundi (strain
ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps10
PE=3 SV=1
Length = 102
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 32 DEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVP------GCGKAT 72
++ +DIC D++E + G+ S IP P + +++P G G AT
Sbjct: 14 EDLDDICADVREIADSTGVALSGPIPLPTKTLEIPSRKSPDGEGTAT 60
>sp|Q58663|LIVG_METJA Probable branched-chain amino acid transport ATP-binding protein
LivG OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=livG PE=1 SV=1
Length = 257
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 19 LLNMVT----PDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDV 65
L+N++T DE + E +DI E YGIVR+ + P+P++ + V
Sbjct: 49 LINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99
>sp|Q5UIP0|RIF1_HUMAN Telomere-associated protein RIF1 OS=Homo sapiens GN=RIF1 PE=1 SV=2
Length = 2472
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENV 63
+V+C + VT D L+ D+ ++CE+ K E +KY +P P N+
Sbjct: 1627 TVICQDSTVTSDLLQVPDDLPNVCEE-KNETSKYAEYSFTSLPVPESNL 1674
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIV 51
V PL L NM P ++ +I +D+ EECNK+G V
Sbjct: 418 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGV 460
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIV 51
V PL L NM P ++ +I +D+ EECNK+G V
Sbjct: 418 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGV 460
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIV 51
V PL L NM P ++ +I +D+ EECNK+G V
Sbjct: 412 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGV 454
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 21 NMVTP---------DELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+M+TP D K ++ +ED ED+ EE K+G + SL I
Sbjct: 56 DMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNI 100
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 9/45 (20%)
Query: 21 NMVTP---------DELKDEDEYEDICEDIKEECNKYGIVRSLEI 56
+M+TP D K ++ +ED EDI EE +K+G V +L +
Sbjct: 56 DMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNV 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.144 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,573,141
Number of Sequences: 539616
Number of extensions: 1168985
Number of successful extensions: 4277
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4231
Number of HSP's gapped (non-prelim): 58
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)