Query psy2203
Match_columns 74
No_of_seqs 123 out of 604
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:51:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v4m_A Splicing factor U2AF 65 99.8 1.2E-20 4E-25 117.3 7.7 63 11-73 2-64 (105)
2 3s6e_A RNA-binding protein 39; 99.8 6.1E-19 2.1E-23 111.6 6.7 58 10-73 3-60 (114)
3 3ue2_A Poly(U)-binding-splicin 99.7 7.1E-18 2.4E-22 107.1 2.2 62 7-73 13-76 (118)
4 2pe8_A Splicing factor 45; RRM 99.5 2.8E-14 9.5E-19 88.4 5.9 58 10-73 4-61 (105)
5 1jmt_A Splicing factor U2AF 35 99.3 1E-11 3.6E-16 76.4 7.0 57 14-73 1-73 (104)
6 3dxb_A Thioredoxin N-terminall 99.2 7.3E-11 2.5E-15 79.1 6.6 58 11-73 121-180 (222)
7 2dit_A HIV TAT specific factor 99.1 9.7E-11 3.3E-15 71.9 6.4 51 9-59 10-61 (112)
8 3r27_A HnRNP L, heterogeneous 97.5 0.00029 9.8E-09 43.3 5.7 46 4-59 11-56 (100)
9 2krb_A Eukaryotic translation 97.2 0.0019 6.6E-08 36.4 6.8 52 14-71 1-52 (81)
10 3ns6_A Eukaryotic translation 97.2 0.0011 3.8E-08 39.2 6.0 56 12-71 4-59 (100)
11 2x1f_A MRNA 3'-END-processing 96.9 0.0029 9.8E-08 36.7 5.8 49 13-71 1-49 (96)
12 3s7r_A Heterogeneous nuclear r 96.8 0.0024 8.1E-08 36.2 4.9 54 8-71 5-58 (87)
13 3mdf_A Peptidyl-prolyl CIS-tra 96.8 0.0025 8.6E-08 35.8 4.8 51 11-71 4-54 (85)
14 1x4e_A RNA binding motif, sing 96.8 0.0036 1.2E-07 35.3 5.2 51 11-71 2-52 (85)
15 2lxi_A RNA-binding protein 10; 96.7 0.0015 5.1E-08 38.1 3.5 48 14-71 1-49 (91)
16 2e5h_A Zinc finger CCHC-type a 96.7 0.0078 2.7E-07 34.4 6.4 51 11-71 13-63 (94)
17 2khc_A Testis-specific RNP-typ 96.6 0.012 4.2E-07 35.0 7.3 53 9-71 35-87 (118)
18 1whw_A Hypothetical protein ri 96.6 0.014 4.8E-07 33.6 7.2 52 10-71 4-55 (99)
19 2cqd_A RNA-binding region cont 96.6 0.018 6.2E-07 34.2 7.8 56 6-71 9-64 (116)
20 2nlw_A Eukaryotic translation 96.6 0.012 4E-07 34.8 6.8 54 12-71 13-66 (105)
21 3s8s_A Histone-lysine N-methyl 96.6 0.0075 2.6E-07 36.5 6.0 51 11-71 3-53 (110)
22 2dnz_A Probable RNA-binding pr 96.5 0.022 7.7E-07 32.4 7.6 51 11-71 2-52 (95)
23 1x5u_A Splicing factor 3B subu 96.4 0.017 5.8E-07 33.6 6.7 53 9-71 10-62 (105)
24 2dgp_A Bruno-like 4, RNA bindi 96.4 0.014 4.8E-07 34.0 6.3 52 10-71 9-60 (106)
25 2dgs_A DAZ-associated protein 96.3 0.021 7.2E-07 32.9 6.8 52 10-71 6-57 (99)
26 1x5s_A Cold-inducible RNA-bind 96.3 0.016 5.5E-07 33.6 6.2 51 11-71 9-59 (102)
27 2rs2_A Musashi-1, RNA-binding 96.3 0.011 3.8E-07 35.3 5.7 52 10-71 21-72 (109)
28 3lqv_A PRE-mRNA branch site pr 96.3 0.019 6.4E-07 34.0 6.5 49 10-71 4-52 (115)
29 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.3 0.031 1.1E-06 33.8 7.6 52 10-71 59-110 (140)
30 3ex7_B RNA-binding protein 8A; 96.2 0.018 6E-07 34.7 6.3 51 11-71 19-69 (126)
31 2cph_A RNA binding motif prote 96.2 0.023 8E-07 33.0 6.6 53 9-71 10-63 (107)
32 2cqg_A TDP-43, TAR DNA-binding 96.1 0.018 6.1E-07 33.5 5.8 44 8-61 9-52 (103)
33 3bs9_A Nucleolysin TIA-1 isofo 96.1 0.021 7.2E-07 31.9 5.9 41 11-61 3-43 (87)
34 2yh0_A Splicing factor U2AF 65 96.1 0.028 9.6E-07 35.4 7.0 41 11-61 111-151 (198)
35 2cqb_A Peptidyl-prolyl CIS-tra 96.1 0.012 4E-07 34.2 4.8 50 11-70 9-58 (102)
36 2kn4_A Immunoglobulin G-bindin 96.1 0.036 1.2E-06 34.4 7.3 51 11-71 67-117 (158)
37 2cqc_A Arginine/serine-rich sp 96.1 0.026 9E-07 32.0 6.2 44 8-61 9-52 (95)
38 2ywk_A Putative RNA-binding pr 96.1 0.025 8.5E-07 32.2 6.1 43 9-61 11-53 (95)
39 2kt5_A RNA and export factor-b 96.0 0.026 9E-07 34.0 6.4 51 10-71 31-81 (124)
40 2dgo_A Cytotoxic granule-assoc 96.0 0.023 7.8E-07 33.7 6.0 43 9-61 10-52 (115)
41 2jrs_A RNA-binding protein 39; 96.0 0.013 4.4E-07 35.0 4.7 43 9-61 21-63 (108)
42 1wex_A Hypothetical protein (r 96.0 0.017 6E-07 34.7 5.3 40 10-59 11-50 (104)
43 2cqi_A Nucleolysin TIAR; RNA r 96.0 0.046 1.6E-06 31.7 7.0 44 8-61 9-52 (103)
44 2cpz_A CUG triplet repeat RNA- 95.9 0.013 4.6E-07 34.8 4.7 43 9-61 20-62 (115)
45 2j76_E EIF-4B, EIF4B, eukaryot 95.9 0.018 6.1E-07 33.6 5.2 53 8-71 13-66 (100)
46 3ulh_A THO complex subunit 4; 95.9 0.021 7E-07 33.4 5.4 42 9-60 24-65 (107)
47 2cq3_A RNA-binding protein 9; 95.9 0.04 1.4E-06 31.9 6.6 42 10-61 11-52 (103)
48 4f02_A Polyadenylate-binding p 95.9 0.013 4.3E-07 38.4 4.9 44 8-61 9-52 (213)
49 1u6f_A Tcubp1, RNA-binding pro 95.8 0.018 6.2E-07 35.2 5.1 42 10-61 38-79 (139)
50 2dnh_A Bruno-like 5, RNA bindi 95.8 0.042 1.4E-06 31.9 6.5 42 9-60 10-51 (105)
51 2a3j_A U1 small nuclear ribonu 95.8 0.044 1.5E-06 34.1 6.9 42 11-58 26-67 (127)
52 2div_A TRNA selenocysteine ass 95.8 0.017 5.7E-07 33.3 4.5 42 10-61 5-47 (99)
53 1x4h_A RNA-binding protein 28; 95.8 0.049 1.7E-06 31.8 6.7 52 10-71 11-62 (111)
54 1l3k_A Heterogeneous nuclear r 95.8 0.015 5.1E-07 36.7 4.6 50 12-73 102-151 (196)
55 2kxn_B Transformer-2 protein h 95.8 0.049 1.7E-06 33.6 6.9 54 8-71 40-93 (129)
56 1oo0_B CG8781-PA, drosophila Y 95.7 0.065 2.2E-06 31.3 7.1 50 12-71 24-73 (110)
57 1wi8_A EIF-4B, eukaryotic tran 95.7 0.038 1.3E-06 32.2 6.0 52 9-71 10-62 (104)
58 1uaw_A Mouse-musashi-1; RNP-ty 95.7 0.014 4.6E-07 32.1 3.8 33 39-71 15-47 (77)
59 1h2v_Z 20 kDa nuclear CAP bind 95.7 0.028 9.6E-07 35.1 5.6 40 12-61 37-76 (156)
60 2la6_A RNA-binding protein FUS 95.7 0.031 1.1E-06 32.3 5.4 44 8-61 7-58 (99)
61 2dnm_A SRP46 splicing factor; 95.6 0.061 2.1E-06 31.1 6.6 51 11-71 10-60 (103)
62 2fy1_A RNA-binding motif prote 95.6 0.08 2.7E-06 31.8 7.3 52 9-71 2-53 (116)
63 3pgw_A U1-A; protein-RNA compl 95.6 0.044 1.5E-06 36.8 6.7 42 9-60 202-243 (282)
64 2jvo_A Nucleolar protein 3; nu 95.6 0.025 8.4E-07 33.8 4.9 45 3-57 20-64 (108)
65 2cjk_A Nuclear polyadenylated 95.6 0.035 1.2E-06 34.0 5.7 49 13-71 2-50 (167)
66 1s79_A Lupus LA protein; RRM, 95.6 0.03 1E-06 33.4 5.2 51 10-71 7-57 (103)
67 2qfj_A FBP-interacting repress 95.6 0.032 1.1E-06 35.6 5.7 50 12-73 123-172 (216)
68 3nmr_A Cugbp ELAV-like family 95.6 0.04 1.4E-06 33.8 5.9 40 12-61 93-132 (175)
69 1x5t_A Splicing factor 3B subu 95.5 0.05 1.7E-06 31.0 5.9 51 11-71 2-53 (96)
70 2dis_A Unnamed protein product 95.5 0.082 2.8E-06 30.8 7.0 51 11-71 5-57 (109)
71 2mss_A Protein (musashi1); RNA 95.5 0.016 5.3E-07 31.8 3.5 34 38-71 13-46 (75)
72 1iqt_A AUF1, heterogeneous nuc 95.5 0.016 5.5E-07 31.7 3.5 33 39-71 14-46 (75)
73 2dgx_A KIAA0430 protein; RRM d 95.5 0.098 3.4E-06 30.1 7.1 44 13-62 8-51 (96)
74 1p27_B RNA-binding protein 8A; 95.4 0.062 2.1E-06 31.2 6.1 40 12-61 21-60 (106)
75 4fxv_A ELAV-like protein 1; RN 95.4 0.016 5.5E-07 34.2 3.6 37 15-61 20-56 (99)
76 3pgw_S U1-70K; protein-RNA com 95.4 0.046 1.6E-06 40.4 6.7 52 10-71 98-149 (437)
77 1x4a_A Splicing factor, argini 95.4 0.11 3.8E-06 30.4 7.2 41 9-59 17-57 (109)
78 4a8x_A RNA-binding protein wit 95.4 0.02 7E-07 32.0 3.8 38 14-61 4-41 (88)
79 3ucg_A Polyadenylate-binding p 95.4 0.032 1.1E-06 31.3 4.6 48 14-71 6-53 (89)
80 3md1_A Nuclear and cytoplasmic 95.3 0.018 6.1E-07 32.0 3.4 38 15-62 2-39 (83)
81 2cq0_A Eukaryotic translation 95.3 0.039 1.3E-06 32.0 5.0 42 10-61 11-52 (103)
82 1nu4_A U1A RNA binding domain; 95.2 0.046 1.6E-06 31.2 5.1 43 10-58 4-46 (97)
83 1sjq_A Polypyrimidine tract-bi 95.2 0.06 2.1E-06 32.9 5.8 39 11-59 13-51 (105)
84 2dng_A Eukaryotic translation 95.2 0.047 1.6E-06 31.7 5.1 43 8-61 9-51 (103)
85 2dgv_A HnRNP M, heterogeneous 95.2 0.085 2.9E-06 29.7 6.0 39 10-58 4-42 (92)
86 2cq1_A PTB-like protein L; RRM 95.2 0.083 2.8E-06 31.6 6.2 41 9-59 10-50 (101)
87 1b7f_A Protein (SXL-lethal pro 95.1 0.061 2.1E-06 32.8 5.7 40 12-61 87-126 (168)
88 2g4b_A Splicing factor U2AF 65 95.1 0.076 2.6E-06 32.6 6.0 40 12-61 92-131 (172)
89 3md3_A Nuclear and cytoplasmic 95.1 0.11 3.6E-06 31.5 6.6 43 10-62 83-125 (166)
90 2m2b_A RNA-binding protein 10; 95.0 0.073 2.5E-06 32.5 5.9 53 9-71 18-72 (131)
91 2do4_A Squamous cell carcinoma 94.9 0.092 3.1E-06 30.2 5.7 41 10-60 13-53 (100)
92 2err_A Ataxin-2-binding protei 94.9 0.069 2.4E-06 31.6 5.3 50 10-71 25-74 (109)
93 1b7f_A Protein (SXL-lethal pro 94.8 0.04 1.4E-06 33.7 4.3 49 13-71 2-50 (168)
94 1x4d_A Matrin 3; structural ge 94.8 0.064 2.2E-06 32.3 5.0 40 11-59 12-51 (102)
95 1sjr_A Polypyrimidine tract-bi 94.8 0.073 2.5E-06 35.2 5.6 40 9-58 39-80 (164)
96 2do0_A HnRNP M, heterogeneous 94.8 0.19 6.4E-06 29.4 7.0 42 10-61 11-52 (114)
97 1wf0_A TDP-43, TAR DNA-binding 94.7 0.055 1.9E-06 30.5 4.4 39 12-60 3-41 (88)
98 2cpf_A RNA binding motif prote 94.7 0.027 9.3E-07 32.3 3.1 40 12-61 3-42 (98)
99 2d9p_A Polyadenylate-binding p 94.7 0.092 3.2E-06 30.3 5.4 41 9-59 10-50 (103)
100 2cq4_A RNA binding motif prote 94.6 0.073 2.5E-06 31.4 5.0 49 13-71 24-72 (114)
101 1l3k_A Heterogeneous nuclear r 94.6 0.064 2.2E-06 33.7 5.0 43 9-61 8-50 (196)
102 3d2w_A TAR DNA-binding protein 94.6 0.051 1.8E-06 31.3 4.2 40 10-59 7-46 (89)
103 2f3j_A RNA and export factor b 94.6 0.12 3.9E-06 33.6 6.3 50 11-71 85-134 (177)
104 3pgw_A U1-A; protein-RNA compl 94.6 0.13 4.4E-06 34.4 6.7 42 11-58 6-47 (282)
105 2ki2_A SS-DNA binding protein 94.6 0.025 8.7E-07 32.0 2.7 34 38-71 15-48 (90)
106 1x4b_A Heterogeneous nuclear r 94.6 0.057 1.9E-06 32.0 4.3 49 13-71 26-74 (116)
107 2ghp_A U4/U6 snRNA-associated 94.5 0.081 2.8E-06 35.6 5.5 41 11-61 207-248 (292)
108 2i2y_A Fusion protein consists 94.5 0.27 9.2E-06 30.3 7.5 40 10-59 69-108 (150)
109 2kvi_A Nuclear polyadenylated 94.4 0.071 2.4E-06 30.7 4.5 42 8-58 4-45 (96)
110 2dhg_A TRNA selenocysteine ass 94.4 0.15 5.2E-06 29.3 6.0 41 10-60 5-46 (104)
111 2dgt_A RNA-binding protein 30; 94.4 0.11 3.9E-06 29.4 5.2 39 10-58 6-44 (92)
112 2ad9_A Polypyrimidine tract-bi 94.3 0.09 3.1E-06 32.7 5.1 40 10-59 27-66 (119)
113 2e5i_A Heterogeneous nuclear r 94.3 0.14 4.7E-06 32.0 5.9 37 12-58 21-59 (124)
114 1x4f_A Matrin 3; structural ge 94.3 0.043 1.5E-06 33.9 3.5 40 11-59 22-61 (112)
115 2dh8_A DAZ-associated protein 94.1 0.055 1.9E-06 31.4 3.6 42 10-61 12-53 (105)
116 1rk8_A CG8781-PA, CG8781-PA pr 94.1 0.19 6.4E-06 31.7 6.3 40 12-61 70-109 (165)
117 2cjk_A Nuclear polyadenylated 94.1 0.068 2.3E-06 32.7 4.1 49 13-71 86-134 (167)
118 3smz_A Protein raver-1, ribonu 94.1 0.12 4.1E-06 34.6 5.7 50 12-73 182-231 (284)
119 2cpe_A RNA-binding protein EWS 93.9 0.12 4E-06 30.3 4.8 52 10-71 11-70 (113)
120 1fxl_A Paraneoplastic encephal 93.9 0.065 2.2E-06 32.5 3.7 40 12-61 86-125 (167)
121 2jwn_A Embryonic polyadenylate 93.9 0.067 2.3E-06 32.0 3.6 38 14-61 36-73 (124)
122 3p5t_L Cleavage and polyadenyl 93.6 0.046 1.6E-06 31.1 2.5 23 39-61 16-40 (90)
123 2xs2_A Deleted in azoospermia- 93.6 0.083 2.8E-06 30.5 3.6 40 11-60 6-45 (102)
124 1fxl_A Paraneoplastic encephal 93.5 0.23 7.7E-06 30.0 5.7 39 13-61 1-39 (167)
125 1p1t_A Cleavage stimulation fa 93.5 0.037 1.3E-06 32.0 2.0 40 12-61 6-45 (104)
126 2cqp_A RNA-binding protein 12; 93.5 0.038 1.3E-06 31.7 2.0 42 9-60 10-51 (98)
127 2xnq_A Nuclear polyadenylated 93.4 0.4 1.4E-05 27.7 6.4 41 9-58 17-57 (97)
128 3tht_A Alkylated DNA repair pr 93.2 0.16 5.6E-06 36.9 5.4 43 7-58 11-54 (345)
129 2lea_A Serine/arginine-rich sp 93.2 0.11 3.7E-06 32.1 3.9 50 12-71 45-94 (135)
130 2qfj_A FBP-interacting repress 93.2 0.2 7E-06 31.7 5.3 49 13-71 27-75 (216)
131 3nmr_A Cugbp ELAV-like family 93.0 0.13 4.3E-06 31.5 4.0 50 14-73 3-52 (175)
132 3zzy_A Polypyrimidine tract-bi 93.0 0.17 5.8E-06 32.1 4.7 41 9-59 21-63 (130)
133 1x5p_A Negative elongation fac 93.0 0.26 9E-06 28.2 5.1 36 11-58 12-47 (97)
134 2dnq_A RNA-binding protein 4B; 92.9 0.28 9.5E-06 27.6 5.1 39 10-58 4-42 (90)
135 1x4c_A Splicing factor, argini 92.9 0.14 4.9E-06 30.0 4.0 39 11-59 12-50 (108)
136 2d9o_A DNAJ (HSP40) homolog, s 92.8 0.2 6.8E-06 30.0 4.5 42 14-58 10-51 (100)
137 2cpj_A Non-POU domain-containi 92.8 0.29 1E-05 28.0 5.1 39 11-59 12-50 (99)
138 1why_A Hypothetical protein ri 92.7 0.59 2E-05 26.5 6.4 39 11-59 14-52 (97)
139 2dnp_A RNA-binding protein 14; 92.7 0.21 7E-06 28.2 4.3 39 11-59 6-44 (90)
140 3md3_A Nuclear and cytoplasmic 92.6 0.31 1.1E-05 29.3 5.3 25 38-62 14-38 (166)
141 2lkz_A RNA-binding protein 5; 92.6 0.081 2.8E-06 31.2 2.5 49 13-71 8-58 (95)
142 4f25_A Polyadenylate-binding p 92.5 0.14 4.8E-06 30.5 3.6 37 14-60 5-41 (115)
143 2ek1_A RNA-binding protein 12; 92.3 0.041 1.4E-06 31.3 0.9 40 11-60 12-51 (95)
144 2cpi_A CCR4-NOT transcription 92.2 0.17 5.9E-06 29.9 3.7 40 12-61 13-55 (111)
145 3sde_A Paraspeckle component 1 92.2 0.19 6.5E-06 33.7 4.3 39 12-60 94-132 (261)
146 2ytc_A PRE-mRNA-splicing facto 92.0 0.54 1.9E-05 25.8 5.5 40 10-59 8-47 (85)
147 1x5o_A RNA binding motif, sing 91.4 0.12 4.3E-06 30.3 2.4 39 12-60 23-61 (114)
148 2dgu_A Heterogeneous nuclear r 91.4 0.71 2.4E-05 26.5 5.7 39 10-58 7-45 (103)
149 2hvz_A Splicing factor, argini 91.3 0.25 8.7E-06 28.3 3.6 21 39-59 15-35 (101)
150 3n9u_C Cleavage and polyadenyl 91.2 0.23 8E-06 31.6 3.7 48 14-71 55-104 (156)
151 3tyt_A Heterogeneous nuclear r 91.1 0.33 1.1E-05 31.9 4.5 48 12-71 121-170 (205)
152 2e44_A Insulin-like growth fac 91.1 0.43 1.5E-05 26.9 4.5 39 12-60 13-52 (96)
153 1whx_A Hypothetical protein ri 91.1 0.31 1.1E-05 28.9 4.0 36 13-58 9-44 (111)
154 3beg_B Splicing factor, argini 91.1 0.24 8.1E-06 29.6 3.5 37 13-59 15-51 (115)
155 2cpd_A Apobec-1 stimulating pr 91.1 1.3 4.3E-05 25.2 6.8 39 10-58 11-51 (99)
156 2bz2_A Negative elongation fac 91.1 0.42 1.4E-05 29.0 4.7 38 9-58 34-71 (121)
157 2voo_A Lupus LA protein; RNA-b 91.0 0.34 1.2E-05 31.7 4.5 47 14-73 109-155 (193)
158 1wf1_A RNA-binding protein RAL 90.9 1.3 4.5E-05 25.7 6.7 38 11-57 24-61 (110)
159 2cpx_A Hypothetical protein FL 90.7 0.58 2E-05 27.2 4.9 45 3-57 14-62 (115)
160 2cpy_A RNA-binding protein 12; 90.5 0.72 2.5E-05 27.2 5.3 50 11-71 12-62 (114)
161 1qm9_A Polypyrimidine tract-bi 90.4 0.95 3.2E-05 28.4 6.1 37 12-58 118-155 (198)
162 1wg5_A Heterogeneous nuclear r 90.2 0.35 1.2E-05 28.2 3.6 49 12-71 13-62 (104)
163 2cq2_A Hypothetical protein LO 90.0 0.47 1.6E-05 29.3 4.2 39 10-58 21-61 (114)
164 1x4g_A Nucleolysin TIAR; struc 89.4 0.61 2.1E-05 27.1 4.3 38 12-59 23-60 (109)
165 3tyt_A Heterogeneous nuclear r 88.9 1.6 5.5E-05 28.5 6.5 40 12-60 2-41 (205)
166 3q2s_C Cleavage and polyadenyl 88.9 0.41 1.4E-05 32.1 3.6 48 14-71 68-117 (229)
167 2adc_A Polypyrimidine tract-bi 88.8 1.7 5.7E-05 28.4 6.5 41 11-60 31-71 (229)
168 3smz_A Protein raver-1, ribonu 88.7 0.45 1.5E-05 31.7 3.7 39 13-61 94-132 (284)
169 2wbr_A GW182, gawky, LD47780P; 88.4 0.72 2.5E-05 27.7 4.1 37 13-59 6-42 (89)
170 2ghp_A U4/U6 snRNA-associated 88.1 1.3 4.6E-05 29.5 5.8 43 10-62 37-79 (292)
171 2la4_A Nuclear and cytoplasmic 88.1 0.47 1.6E-05 27.1 3.1 37 13-59 26-62 (101)
172 2dnl_A Cytoplasmic polyadenyla 87.1 0.74 2.5E-05 27.1 3.6 39 12-61 6-44 (114)
173 2adc_A Polypyrimidine tract-bi 86.8 2.8 9.5E-05 27.3 6.7 37 12-58 149-186 (229)
174 2j8a_A Histone-lysine N-methyl 85.9 0.63 2.1E-05 30.2 3.0 49 17-71 5-53 (136)
175 2dnr_A Synaptojanin-1; RRM dom 85.8 4.1 0.00014 24.5 7.1 25 35-59 26-50 (91)
176 3egn_A RNA-binding protein 40; 85.5 1.7 5.7E-05 26.4 4.7 42 3-54 34-75 (143)
177 4f02_A Polyadenylate-binding p 84.7 1 3.5E-05 29.1 3.7 37 14-60 103-139 (213)
178 2dgw_A Probable RNA-binding pr 84.4 3.6 0.00012 22.7 5.6 40 10-60 6-45 (91)
179 3sde_A Paraspeckle component 1 84.1 1.6 5.6E-05 29.0 4.6 38 12-59 20-57 (261)
180 2lcw_A RNA-binding protein FUS 83.8 0.23 7.9E-06 29.3 0.0 40 12-61 5-52 (116)
181 2hgn_A Heterogeneous nuclear r 83.1 1 3.5E-05 28.3 3.0 48 12-71 44-91 (139)
182 1fjc_A Nucleolin RBD2, protein 82.6 1.4 4.8E-05 24.7 3.3 38 7-54 9-46 (96)
183 3u1l_A PRE-mRNA-splicing facto 81.3 1.7 5.8E-05 30.0 3.8 45 12-58 132-177 (240)
184 1fj7_A Nucleolin RBD1, protein 80.9 0.66 2.3E-05 26.4 1.4 50 11-71 14-63 (101)
185 2e5g_A U6 snRNA-specific termi 80.5 3.4 0.00012 23.1 4.4 37 12-58 6-42 (94)
186 1wez_A HnRNP H', FTP-3, hetero 79.9 2.5 8.6E-05 24.5 3.8 40 10-60 11-50 (102)
187 2lmi_A GRSF-1, G-rich sequence 79.7 1.1 3.9E-05 26.0 2.2 49 12-71 9-60 (107)
188 1ceu_A Protein (HIV-1 regulato 79.3 1.1 3.8E-05 24.6 1.9 18 31-48 16-33 (51)
189 2dnn_A RNA-binding protein 12; 79.2 3.1 0.0001 24.8 4.1 46 14-71 16-61 (109)
190 1qm9_A Polypyrimidine tract-bi 79.2 1.8 6.2E-05 27.1 3.2 38 14-60 3-40 (198)
191 2diu_A KIAA0430 protein; struc 78.9 1.4 4.9E-05 26.8 2.5 36 13-54 7-44 (96)
192 2e5j_A Methenyltetrahydrofolat 78.9 4.7 0.00016 22.6 4.7 35 12-57 17-51 (97)
193 2cqh_A IGF-II mRNA-binding pro 78.8 1.5 5.2E-05 24.5 2.5 37 11-57 5-42 (93)
194 2dha_A FLJ20171 protein; RRM d 78.2 1.6 5.6E-05 26.7 2.7 49 12-73 21-73 (123)
195 1fje_B Nucleolin RBD12, protei 77.7 9.3 0.00032 23.1 6.4 35 10-54 95-129 (175)
196 2jvr_A Nucleolar protein 3; RN 77.7 2.5 8.4E-05 25.4 3.4 35 14-58 28-63 (111)
197 2db1_A Heterogeneous nuclear r 77.3 0.84 2.9E-05 27.2 1.1 40 12-61 15-57 (118)
198 1esx_A VPR protein; helix, amp 76.7 1.9 6.5E-05 26.5 2.6 18 31-48 16-33 (96)
199 1ufw_A Synaptojanin 2; RNP dom 75.3 2.9 0.0001 25.4 3.2 26 35-60 35-60 (95)
200 2hgl_A HNRPF protein, heteroge 75.1 0.99 3.4E-05 28.2 1.1 40 12-61 42-84 (136)
201 2hzc_A Splicing factor U2AF 65 74.8 8 0.00027 20.9 6.2 39 11-59 3-52 (87)
202 1wel_A RNA-binding protein 12; 73.7 1.4 4.7E-05 26.2 1.4 38 11-58 22-60 (124)
203 2fc9_A NCL protein; structure 73.6 9 0.00031 21.4 5.0 37 10-59 11-47 (101)
204 2hgm_A HNRPF protein, heteroge 73.2 13 0.00046 22.7 6.7 48 12-71 40-89 (126)
205 1owx_A Lupus LA protein, SS-B, 72.2 2.3 7.7E-05 26.6 2.2 43 9-60 13-55 (121)
206 2fc8_A NCL protein; structure 47.9 24 0.00083 19.5 3.5 38 9-59 10-47 (102)
207 2dpr_A CON-T(K7GLA); conantoxi 45.5 16 0.00055 17.0 2.0 14 31-44 2-15 (26)
208 1use_A VAsp, vasodilator-stimu 44.2 21 0.00072 18.9 2.6 15 33-47 12-26 (45)
209 1wg1_A KIAA1579 protein, homol 40.5 13 0.00044 20.4 1.5 34 13-57 4-37 (88)
210 2rpb_A Hypothetical membrane p 37.6 22 0.00076 20.5 2.3 23 35-57 83-106 (113)
211 2ewh_A Major carboxysome shell 37.1 66 0.0023 19.1 4.5 30 33-62 56-87 (98)
212 2rb9_A HYPE protein; hydrogena 36.6 43 0.0015 23.3 4.0 25 25-50 99-123 (334)
213 2v9y_A Phosphoribosylformylgly 36.4 22 0.00076 24.8 2.5 28 22-50 77-104 (334)
214 2xj4_A MIPZ; replication, cell 35.9 76 0.0026 21.0 5.0 43 14-59 179-221 (286)
215 2zod_A Selenide, water dikinas 35.2 23 0.00077 24.8 2.4 22 29-50 114-135 (345)
216 2z01_A Phosphoribosylformylgly 34.9 24 0.00082 24.6 2.5 25 25-50 110-134 (348)
217 1vfj_A Nitrogen regulatory pro 34.6 52 0.0018 19.5 3.7 28 30-73 66-93 (116)
218 3k4h_A Putative transcriptiona 34.6 33 0.0011 22.0 3.0 43 9-52 4-46 (292)
219 4fvg_A Stomatin; mixed alpha-b 34.0 46 0.0016 20.1 3.4 22 35-56 92-114 (133)
220 3p4e_A Phosphoribosylformylgly 32.4 28 0.00096 24.6 2.5 29 21-50 111-139 (349)
221 3m84_A Phosphoribosylformylgly 32.3 32 0.0011 24.3 2.8 29 21-50 110-138 (350)
222 3mcq_A Thiamine-monophosphate 32.3 32 0.0011 23.7 2.8 22 29-50 92-113 (319)
223 1yrk_A NPKC-delta, protein kin 31.6 69 0.0024 20.2 4.0 58 1-60 54-113 (126)
224 2ln3_A De novo designed protei 30.8 52 0.0018 18.9 3.0 23 28-50 35-57 (83)
225 2eg2_A Nitrogen regulatory pro 29.9 68 0.0023 18.8 3.6 28 30-73 66-93 (112)
226 2btu_A Phosphoribosyl-aminoimi 29.4 34 0.0011 23.9 2.5 27 23-50 106-132 (346)
227 3cim_A Carbon dioxide-concentr 29.3 90 0.0031 18.5 4.1 31 32-62 51-84 (99)
228 4axj_A EUTM, ethanolamine carb 28.8 1E+02 0.0034 18.7 4.5 30 33-62 55-85 (104)
229 2ns1_B Nitrogen regulatory pro 28.7 40 0.0014 20.1 2.4 29 30-74 70-98 (116)
230 1hwu_A PII protein; herbaspiri 28.7 63 0.0021 18.9 3.3 29 30-74 66-94 (112)
231 3mpy_A Ethanolamine utilizatio 28.6 70 0.0024 19.4 3.5 30 33-62 51-81 (103)
232 2enj_A NPKC-theta, protein kin 28.3 72 0.0025 20.4 3.7 59 1-61 59-119 (138)
233 2yyd_A Selenide, water dikinas 28.2 28 0.00095 24.6 1.9 22 29-50 114-135 (345)
234 2fg1_A Conserved hypothetical 27.8 80 0.0027 19.6 3.8 43 18-62 78-129 (158)
235 4ard_A Capsid protein P27; vir 27.4 35 0.0012 21.3 2.0 15 36-50 4-18 (116)
236 1v74_B Colicin D immunity prot 26.1 50 0.0017 19.6 2.4 34 15-48 50-85 (87)
237 2yxz_A Thiamin-monophosphate k 25.0 49 0.0017 22.5 2.6 30 20-50 88-117 (311)
238 2j9c_A GLNK1, hypothetical nit 23.8 93 0.0032 18.5 3.5 28 30-73 68-95 (119)
239 3c9u_A Thiamine monophosphate 22.6 49 0.0017 23.3 2.3 28 22-50 122-149 (342)
240 2gw8_A PII signal transduction 22.5 73 0.0025 18.7 2.8 28 30-73 68-95 (114)
241 3hs3_A Ribose operon repressor 22.5 1.6E+02 0.0053 18.7 4.8 21 31-51 22-42 (277)
242 2z1u_A Hydrogenase expression/ 22.2 61 0.0021 22.5 2.7 25 25-50 99-123 (343)
243 1qrj_B HTLV-I capsid protein; 21.6 44 0.0015 22.4 1.8 13 38-50 5-17 (199)
244 4fe7_A Xylose operon regulator 21.0 1.4E+02 0.0049 20.5 4.4 47 3-56 15-61 (412)
245 3vti_C Hydrogenase maturation 21.0 86 0.003 21.4 3.2 25 25-50 78-102 (314)
246 3qkb_A Uncharacterized protein 20.6 1.5E+02 0.0051 18.3 3.9 38 22-59 44-87 (111)
No 1
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.83 E-value=1.2e-20 Score=117.26 Aligned_cols=63 Identities=57% Similarity=1.157 Sum_probs=57.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
..||+||+|+|||+++++.++.+|++|++|+++||+|||.|.+|.||++..+....+.|.+||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV 64 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFV 64 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEE
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEE
Confidence 579999999999999999999999999999999999999999999999886544456788887
No 2
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.77 E-value=6.1e-19 Score=111.64 Aligned_cols=58 Identities=28% Similarity=0.382 Sum_probs=52.2
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
+..||+||+|+|||+++++.++++|.||++||++||+|||.|.+|.|++++ +-|.+||
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~------~~G~~fV 60 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS------AQGNVYV 60 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC------TTCCEEE
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC------CcEEEEE
Confidence 568999999999999999999999999999999999999999999999864 2455665
No 3
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.68 E-value=7.1e-18 Score=107.15 Aligned_cols=62 Identities=27% Similarity=0.450 Sum_probs=52.4
Q ss_pred cCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCC--CCCceEEEEe
Q psy2203 7 RLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENV--DVPGCGKATL 73 (74)
Q Consensus 7 ~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~--~~~gvGkVFv 73 (74)
++....||+||+|.|||+++|+.++ |.+||++||+|||.|.+|.|++++.+. ...+.|++||
T Consensus 13 kl~~~~ps~vl~L~Nm~~~~el~dd-----leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV 76 (118)
T 3ue2_A 13 KLLRKQESTVMVLRNMVDPKDIDDD-----LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFV 76 (118)
T ss_dssp HHHHHHSCCEEEEESCSCGGGCCTT-----HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHH-----HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEE
Confidence 3445569999999999999998765 899999999999999999999987542 3456799998
No 4
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=2.8e-14 Score=88.43 Aligned_cols=58 Identities=28% Similarity=0.280 Sum_probs=45.5
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
...||+||+|.||++++++.++ +.+|++++|+|||.|.+|.|++.+.+ ...+-|.+||
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd-----~~~dl~~~f~~~G~V~~v~i~~~~~~-~~~~~G~~FV 61 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDED-----LEVETKEECEKYGKVGKCVIFEIPGA-PDDEAVRIFL 61 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSC-CTTTSEEEEE
T ss_pred CCCCCCEEEEEcCCChHHhhHH-----HHHHHHHHHHhcCCEEEEEEecCCCC-CCCCcEEEEE
Confidence 4578999999999999998654 78999999999999999999986532 1233577776
No 5
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1e-11 Score=76.39 Aligned_cols=57 Identities=21% Similarity=0.457 Sum_probs=43.3
Q ss_pred ceEEEeeCCC-CCCcCCC--------------hhHHHHHHHHHHHHH-HhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 14 FSVLCLLNMV-TPDELKD--------------EDEYEDICEDIKEEC-NKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 14 s~vv~L~Nm~-~~~el~~--------------~~~~~ei~eDv~eEC-~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
|++|+|.||| +|+.... .+.|.++.+||++|| ++||.|.+|.|++...+ ..-|.+||
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~---~~~G~~fV 73 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD---HLVGNVYV 73 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS---SSEEEEEE
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC---CccEEEEE
Confidence 6899999999 5665432 135789999999999 99999999999986543 34677776
No 6
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=7.3e-11 Score=79.15 Aligned_cols=58 Identities=28% Similarity=0.468 Sum_probs=50.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCC--CCCceEEEEe
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENV--DVPGCGKATL 73 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~--~~~gvGkVFv 73 (74)
..+++++.|.||++++++.++ +.+|+++||+|||.|.++.|+++..+. ...+.|.+||
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e-----~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv 180 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDD-----LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFV 180 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTT-----HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEE
T ss_pred ccccccchhhcCCCHHHHHHH-----HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEE
Confidence 456889999999999998875 778999999999999999999987653 4467899998
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=9.7e-11 Score=71.89 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=44.9
Q ss_pred CCCCCceEEEeeCCCCCCcCC-ChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELK-DEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~-~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
....+|++|+|.||+++.++. ++++|+++++|++++|++||.|.+|.|+.+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~ 61 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR 61 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC
Confidence 455789999999999999976 456789999999999999999999999654
No 8
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.48 E-value=0.00029 Score=43.31 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=33.1
Q ss_pred CcccCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 4 PWDRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 4 ~~d~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.||+.....|+++|.+.|+= .+.. .+|+++-+++||.|.+|.+.+.
T Consensus 11 ~~~~~~~~~ps~~l~V~NLp--~~~t--------e~~L~~lF~~fG~V~~v~i~~~ 56 (100)
T 3r27_A 11 NYDDPHKTPASPVVHIRGLI--DGVV--------EADLVEALQEFGPISYVVVMPK 56 (100)
T ss_dssp ------CCCCCSEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEETT
T ss_pred cccccccCCCCcEEEEeCCC--CCCC--------HHHHHHHHhccCCEEEEEEEcC
Confidence 58999999999999999984 3333 2577899999999999999863
No 9
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.21 E-value=0.0019 Score=36.38 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=36.2
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
++.|.+.|+ |.+. ++.++..++|+++.+++||.|.++.|++.+ + .+.|.|.|
T Consensus 1 ~~~l~V~nL--p~~~--~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~-g-~~~g~afV 52 (81)
T 2krb_A 1 DSVIVVDNV--PQVG--PDRLEKLKNVIHKIFSKFGKITNDFYPEED-G-KTKGYIFL 52 (81)
T ss_dssp CCEEEEESC--CCCC--TTTHHHHHHHHHHHHHTTCCEEEEECCCBT-T-BCCCEEEE
T ss_pred CCEEEEeCC--CCCc--HHHHHHHHHHHHHHHhhcCCeEEEEecCCC-C-cEeEEEEE
Confidence 356778888 3333 334666889999999999999999999422 2 33455544
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.21 E-value=0.0011 Score=39.18 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=41.5
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++|.+.|+=. .+++.+.-..+++++-+++||.|.+|.|++...+....|.|.|
T Consensus 4 ~~~~~vfV~nLp~----v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV 59 (100)
T 3ns6_A 4 GSDQYIVVNGAPV----IPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59 (100)
T ss_dssp CGGGEEEEESCCC----CBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEE
T ss_pred CcCcEEEEeCCCc----CChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEE
Confidence 4467888999843 2344566788999999999999999999987654344566654
No 11
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.92 E-value=0.0029 Score=36.65 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=35.2
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
|++.|.+.|+= .+.. .+|+++-+++||.|.++.|++...+....|.|.|
T Consensus 1 P~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 49 (96)
T 2x1f_A 1 PSRVVYLGSIP--YDQT--------EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFI 49 (96)
T ss_dssp CCSEEEEESCC--TTCC--------HHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEE
T ss_pred CCcEEEEECCC--CCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEE
Confidence 67888899883 3333 3578889999999999999987654334455544
No 12
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.84 E-value=0.0024 Score=36.22 Aligned_cols=54 Identities=15% Similarity=0.064 Sum_probs=36.2
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.....+++.|.+.|+= .+.. .+|+++-+++||.|.++.+++...+....|.|.|
T Consensus 5 ~~~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 58 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLS--WDTS--------KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 58 (87)
T ss_dssp --CCSCTTEEEEECCC--TTCC--------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhCCCEEEEEEeecCCCCccccEEEE
Confidence 3455677888899983 3332 3578888999999999999987653333344433
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.80 E-value=0.0025 Score=35.77 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=36.0
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+= .+.. .+|+++.+++||.|.++.+++...+....|.|.|
T Consensus 4 ~~~~~~l~V~nl~--~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 54 (85)
T 3mdf_A 4 ATTKRVLYVGGLA--EEVD--------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 54 (85)
T ss_dssp CCCSSEEEEECCC--TTCC--------HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEE
T ss_pred CCCCCEEEEECCC--CCCC--------HHHHHHHHhccCCEEEEEEEECCCCCccccEEEE
Confidence 4578889999983 3332 3678889999999999999886543333444443
No 14
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.0036 Score=35.26 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+ +.+.. .+|+++-+++||.|.++.|++...+....|.|.|
T Consensus 2 ~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 52 (85)
T 1x4e_A 2 SSGSSGLYIRGL--QPGTT--------DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFV 52 (85)
T ss_dssp CCCCCEEEEESC--CTTCC--------HHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEE
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEE
Confidence 456788889997 33333 2568888999999999999987654444555554
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.72 E-value=0.0015 Score=38.14 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=34.7
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcC-CeEEEEecCCCCCCCCCceEEE
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG-IVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G-~V~~V~Iprp~~~~~~~gvGkV 71 (74)
|++|.+.|+ |.+.. .+|+++.+++|| .|.+|.|++...+...-|.|.|
T Consensus 1 S~~i~v~nL--p~~~t--------e~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV 49 (91)
T 2lxi_A 1 SNIVMLRML--PQAAT--------EDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFV 49 (91)
T ss_dssp CCEEEEETC--CSSCC--------HHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEE
T ss_pred CCEEEEeCC--CCCCC--------HHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEE
Confidence 578888887 33443 358889999999 8999999987654444565554
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.0078 Score=34.37 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=36.6
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 13 ~~~~~~l~V~nlp--~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 63 (94)
T 2e5h_A 13 APSKSTVYVSNLP--FSLT--------NNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 63 (94)
T ss_dssp CCCTTSEEEESCC--TTSC--------HHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEE
T ss_pred CCCCCEEEEECCC--CCCC--------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEE
Confidence 4566778899983 3332 3568899999999999999987664444555554
No 17
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.63 E-value=0.012 Score=35.01 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=37.1
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
....+++.|.+.|+= .++. .+|+++-+++||.|.++.|++...+....|.|.|
T Consensus 35 ~~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 87 (118)
T 2khc_A 35 IEGPEGCNLFIYHLP--QEFT--------DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFV 87 (118)
T ss_dssp CCCCCSEEEEEECSC--TTCC--------HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEE
T ss_pred CCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEE
Confidence 344567888899983 3332 2578888999999999999987654344455544
No 18
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.60 E-value=0.014 Score=33.63 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++........|.|.|
T Consensus 4 ~~~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 55 (99)
T 1whw_A 4 GSSGSGRLFVRNLSY--TSS--------EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 55 (99)
T ss_dssp CCCSCEEEEEECCCT--TCC--------HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEE
T ss_pred CCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEE
Confidence 346788899999842 332 2478889999999999999987644334455544
No 19
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.59 E-value=0.018 Score=34.22 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=39.3
Q ss_pred ccCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 6 DRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 6 d~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..-....+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 64 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPY--HTT--------DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 64 (116)
T ss_dssp CCCCCSCSSSEEEEECCCS--SCC--------HHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEE
T ss_pred CCCcCCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEE
Confidence 3444556788888999842 332 3578888999999999999997654444455544
No 20
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.56 E-value=0.012 Score=34.83 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=37.5
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..++.|.+.|+=. . .++.++...+|+++-+++||.|.+|.|++.+ + .+.|.|.|
T Consensus 13 ~~~~~l~V~nLp~--~--~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~-g-~~~G~afV 66 (105)
T 2nlw_A 13 GIDSVIVVDNVPQ--V--GPDRLEKLKNVIHKIFSKFGKITNDFYPEED-G-KTKGYIFL 66 (105)
T ss_dssp SCCSEEEEESCCC--C--CTTTTTHHHHHHHHHHGGGSCEEEEECCCBT-T-BSCCEEEE
T ss_pred CCCCEEEEeCCCc--c--hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCC-C-CeeeEEEE
Confidence 3467788999753 2 2334556889999999999999999999422 2 33455544
No 21
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.56 E-value=0.0075 Score=36.48 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=35.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..|++.|.+.|+= .++. .+|+++.+++||.|.+|.|++...+...-|.|.|
T Consensus 3 ~~p~~~lfV~nL~--~~~t--------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV 53 (110)
T 3s8s_A 3 QIPLKEVTFARLN--DNVR--------ETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARV 53 (110)
T ss_dssp CSCCCEEEEESCC--TTCC--------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCcEEEEECCC--CCCC--------HHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEE
Confidence 4577888899973 2332 3567888999999999999987653333344433
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.022 Score=32.43 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=36.1
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 2 ~~~~~~l~v~nlp~--~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 52 (95)
T 2dnz_A 2 SSGSSGLYVGSLHF--NIT--------EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 52 (95)
T ss_dssp CSCCCEEEEESCCT--TCC--------HHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEE
T ss_pred CCCCcEEEEeCCCC--CCC--------HHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEE
Confidence 35678888999832 232 3578888999999999999987654344455544
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.40 E-value=0.017 Score=33.62 Aligned_cols=53 Identities=11% Similarity=0.029 Sum_probs=37.4
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
....+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++........|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 62 (105)
T 1x5u_A 10 SERNQDATVYVGGLD--EKVS--------EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 62 (105)
T ss_dssp CCCCTTTEEEEECCC--TTCC--------HHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEE
T ss_pred ccCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEE
Confidence 445677888899983 3333 2568889999999999999987644344455544
No 24
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.38 E-value=0.014 Score=34.04 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++...+...-|.|.|
T Consensus 9 ~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 60 (106)
T 2dgp_A 9 KDHDAIKLFIGQIP--RNLD--------EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFL 60 (106)
T ss_dssp CCTTCEEEEEESCC--TTCC--------HHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEE
T ss_pred CCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEE
Confidence 44667888899983 3332 2478899999999999999987654334455544
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.32 E-value=0.021 Score=32.93 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++........|.|.|
T Consensus 6 ~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 57 (99)
T 2dgs_A 6 SGSKSNKIFVGGIP--HNCG--------ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 57 (99)
T ss_dssp CCSSCCEEEEESCC--SSCC--------HHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEE
T ss_pred CCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEE
Confidence 44677888899983 2332 2468888999999999999987654334455544
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.016 Score=33.56 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++........|.|.|
T Consensus 9 ~~~~~~l~v~nLp--~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 59 (102)
T 1x5s_A 9 ASDEGKLFVGGLS--FDTN--------EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 59 (102)
T ss_dssp CCCCSEEEEESCC--TTCC--------HHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEE
T ss_pred CCCCCEEEEECCC--CCCC--------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEE
Confidence 3567788899983 3332 3568888999999999999987654334444443
No 27
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.31 E-value=0.011 Score=35.28 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=34.5
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 21 ~~~~~~~lfV~nLp--~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV 72 (109)
T 2rs2_A 21 MGSSGCKMFIGGLS--WQTT--------QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 72 (109)
T ss_dssp -----CCEEEESCC--TTCC--------HHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEE
T ss_pred cCCCCCEEEEeCCC--CCCC--------HHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEE
Confidence 34566778888873 3333 3578889999999999999987654445566655
No 28
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.27 E-value=0.019 Score=34.03 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=35.0
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+..+++.|.+.|+ +.+.. .+|+++-+++||.|.+|.|++... ..|.|.|
T Consensus 4 ~~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV 52 (115)
T 3lqv_A 4 PPEVNRILYIRNL--PYKIT--------AEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYV 52 (115)
T ss_dssp CTTCCSEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEECSTT---TTTCEEE
T ss_pred CCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEE
Confidence 4567888999997 33333 356888999999999999987432 2455544
No 29
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.26 E-value=0.031 Score=33.84 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 59 ~~~~~~~l~v~nlp~--~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 110 (140)
T 2ku7_A 59 SATTKRVLYVGGLAE--EVD--------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 110 (140)
T ss_dssp SCSSCCEEEEECCCT--TCC--------HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEE
T ss_pred CCCCCcEEEEEeCCC--CCC--------HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEE
Confidence 345678888999832 332 2678888999999999999987654344555544
No 30
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.23 E-value=0.018 Score=34.69 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=36.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+= .+.. .+||++-+++||.|.+|.|++...+....|.|.|
T Consensus 19 ~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 69 (126)
T 3ex7_B 19 SVEGWILFVTGVH--EEAT--------EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 69 (126)
T ss_dssp CSSSEEEEEESCC--TTCC--------HHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEE
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 3567789999984 2332 3578888999999999999987654344555554
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.22 E-value=0.023 Score=33.03 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=36.3
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC-CCCCCCCceEEE
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP-IENVDVPGCGKA 71 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp-~~~~~~~gvGkV 71 (74)
....+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++. .......|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV 63 (107)
T 2cph_A 10 PKKQTTSKILVRNIPF--QAN--------QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 63 (107)
T ss_dssp CCSSCCCCEEEESCCT--TCC--------HHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEE
T ss_pred ccCCCCCEEEEeCCCC--cCC--------HHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEE
Confidence 3446678888999832 332 3578888999999999999987 333334455544
No 32
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.13 E-value=0.018 Score=33.49 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=32.4
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.....+++.|.+.|+ +.++. .+|+++-+++||.|.+|.|++...
T Consensus 9 ~~~~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 52 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGL--PWKTT--------EQDLKEYFSTFGEVLMVQVKKDLK 52 (103)
T ss_dssp SCCCCCCCCEEEESC--CSSCC--------HHHHHHHHGGGSCEEEEEEEECSS
T ss_pred CCccCCCCEEEEEcC--CCcCC--------HHHHHHHHHhcCCeEEEEEEecCC
Confidence 344566777889996 33333 357888899999999999998654
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.12 E-value=0.021 Score=31.95 Aligned_cols=41 Identities=7% Similarity=0.132 Sum_probs=29.5
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
..+++.|.+.|+=. +.. .+|+++-+++||.|.++.+++...
T Consensus 3 ~~~~~~l~v~nlp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 43 (87)
T 3bs9_A 3 LGSHFHVFVGDLSP--EIT--------TAAIAAAFAPFGRISDARVVKDMA 43 (87)
T ss_dssp ---CEEEEEESCCT--TCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCceEEEEeCCCC--CCC--------HHHHHHHHHhcCCEeEEEEEecCC
Confidence 34677888998843 232 357888999999999999998654
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.11 E-value=0.028 Score=35.39 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=32.0
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
..+++.|.+.|+=. +.. .+|+++.+++||.|.++.+++...
T Consensus 111 ~~~~~~l~v~nl~~--~~~--------~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 111 PDSAHKLFIGGLPN--YLN--------DDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp SCCCCEEEEECCCT--TCC--------HHHHHHHHHTBSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCCC--CCC--------HHHHHHHHHHcCCccEEEEeecCC
Confidence 35678888999854 222 467899999999999999998653
No 35
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.10 E-value=0.012 Score=34.19 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGK 70 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGk 70 (74)
..+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...+....|.|.
T Consensus 9 ~~~~~~l~V~nLp--~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~af 58 (102)
T 2cqb_A 9 ATTKRVLYVGGLA--EEVD--------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAF 58 (102)
T ss_dssp CCCCSCEEEESCC--SSCC--------HHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEE
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHhhccCCEEEEEEEecCCCCCcceEEE
Confidence 3567888899983 3333 367888999999999999988754333344443
No 36
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.07 E-value=0.036 Score=34.44 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=36.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++...+...-|.|.|
T Consensus 67 ~~~~~~l~v~nl~--~~~~--------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV 117 (158)
T 2kn4_A 67 VEGMTSLKVDNLT--YRTS--------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 117 (158)
T ss_dssp CCBCCEEEEESCC--TTCC--------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEE
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEE
Confidence 3557788899883 3332 3578889999999999999987644344555544
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.06 E-value=0.026 Score=32.04 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.....+++.|.+.|+=. +.. .+|+++-+++||.|.+|.+++...
T Consensus 9 ~~~~~~~~~l~v~nlp~--~~t--------~~~l~~~f~~~G~v~~v~i~~~~~ 52 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSL--YTT--------ERDLREVFSKYGPIADVSIVYDQQ 52 (95)
T ss_dssp CCSCCGGGCEEEESCCS--SCC--------HHHHHHHHHTTSCEEEEEEEECSS
T ss_pred CCCCCCCCEEEEECCCC--CCC--------HHHHHHHHHhcCCeeEEEEEEcCC
Confidence 34456788899999832 332 246888999999999999988654
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.05 E-value=0.025 Score=32.22 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=32.2
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
....+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++...
T Consensus 11 ~~~~~~~~l~v~nlp~--~~~--------~~~l~~~F~~~G~i~~v~i~~~~~ 53 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEA--RVR--------EEILYELFLQAGPLTKVTICKDRE 53 (95)
T ss_dssp -CTTGGGEEEEECCCT--TCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCCCEEEEECCCC--CCC--------HHHHHHHHHhcCCEEEEEEEECCC
Confidence 3456778899999832 332 357888999999999999998654
No 39
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.05 E-value=0.026 Score=33.96 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=35.8
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+..+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++... ....|.|.|
T Consensus 31 ~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~-g~~~g~afV 81 (124)
T 2kt5_A 31 GVETGAKLLVSNLD--FGVS--------DADIQELFAEFGTLKKAAVDYDRS-GRSLGTADV 81 (124)
T ss_dssp CCSSCEEEEEESCC--SSCC--------HHHHHHHHHTTSCCSEEEEECCSS-SSCCSEEEE
T ss_pred CCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeeEEEEEECCC-CCEeeEEEE
Confidence 34567888899983 3333 356888899999999999998762 233455544
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.03 E-value=0.023 Score=33.66 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
....+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++...
T Consensus 10 ~~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 52 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLS--PEIT--------TEDIKAAFAPFGRISDARVVKDMA 52 (115)
T ss_dssp CCSTTCEEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCCcEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEEcCC
Confidence 345678889999983 3332 357889999999999999998654
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.98 E-value=0.013 Score=35.04 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=32.5
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+..+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...
T Consensus 21 ~~~~~~~~l~V~nLp--~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~ 63 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLH--FNIT--------EDMLRGIFEPFGRIESIQLMMDSE 63 (108)
T ss_dssp CSCSSCEEEEEECCC--SSCC--------HHHHHHHHTTTSCEEEEEEEEETT
T ss_pred cCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEEcCC
Confidence 345677889999983 3333 356888899999999999998654
No 42
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.96 E-value=0.017 Score=34.75 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
...|+++|.+.|+= .+.. .+|+++.+++||.|.+|.+.+.
T Consensus 11 ~~~p~~~l~V~nLp--~~~t--------e~~L~~~F~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 11 KVSVSPVVHVRGLC--ESVV--------EADLVEALEKFGTICYVMMMPF 50 (104)
T ss_dssp CCCCCSEEEEESCC--SSCC--------HHHHHHHHTTTSCEEEEEEETT
T ss_pred cCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhCCCEEEEEEECC
Confidence 45678999999963 3443 2578899999999999999873
No 43
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.96 E-value=0.046 Score=31.69 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=33.4
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.....+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...
T Consensus 9 ~~~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 52 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLS--RDVT--------EVLILQLFSQIGPCKSCKMITEHT 52 (103)
T ss_dssp CCCSCCCCEEEEESCC--TTCC--------HHHHHHHHHHHSCEEEEEEECCCC
T ss_pred CCCCCCCCEEEEeCCC--ccCC--------HHHHHHHHHhcCCEeEEEEEecCC
Confidence 3455678889999984 3332 357888899999999999999754
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.94 E-value=0.013 Score=34.77 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=32.1
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
....+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++...
T Consensus 20 ~~~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 62 (115)
T 2cpz_A 20 KEGPEGANLFIYHLP--QEFG--------DQDLLQMFMPFGNVVSAKVFIDKQ 62 (115)
T ss_dssp CCCSTTCCEEEESCC--SSCC--------HHHHHHHHGGGSCCSEEEEEECSS
T ss_pred cCCCCCcEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEECCC
Confidence 344566788899984 2332 267888999999999999988654
No 45
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.94 E-value=0.018 Score=33.62 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=32.9
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC-CCCCCCceEEE
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI-ENVDVPGCGKA 71 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~-~~~~~~gvGkV 71 (74)
.....+++.|.+.|+ +.+..+ +|+++-+++|| |.+|.|++.. ......|.|.|
T Consensus 13 ~~~~~~~~~l~V~nL--p~~~t~--------~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV 66 (100)
T 2j76_E 13 RLPKSPPYTAFLGNL--PYDVTE--------ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 66 (100)
T ss_dssp -------CEEEESCC--SSCCSS--------SHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEE
T ss_pred cCCCCCCcEEEEeCC--CCCCCH--------HHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEE
Confidence 344566778889998 333443 36788899999 9999999876 23344566655
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.94 E-value=0.021 Score=33.36 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=31.9
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
.+..+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++..
T Consensus 24 ~~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~ 65 (107)
T 3ulh_A 24 AGVETGGKLLVSNLD--FGVS--------DADIQELFAEFGTLKKAAVHYDR 65 (107)
T ss_dssp CCCCCSEEEEEESCC--TTCC--------HHHHHHHHHTTSCEEEEEEEECT
T ss_pred CCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEECC
Confidence 344678889999973 3332 35678889999999999999876
No 47
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.92 E-value=0.04 Score=31.94 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=31.8
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
...+++.|.+.|+ +.++. .+|+++-+++||.|.+|.|++...
T Consensus 11 ~~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~ 52 (103)
T 2cq3_A 11 SKSTPKRLHVSNI--PFRFR--------DPDLRQMFGQFGKILDVEIIFNER 52 (103)
T ss_dssp CSCCCCEEEEESC--CTTCC--------HHHHHHHGGGTSCEEEEEEECCTT
T ss_pred CCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCC
Confidence 4466788889998 33333 256888899999999999998654
No 48
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.91 E-value=0.013 Score=38.41 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
..+..|++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...
T Consensus 9 ~~p~~p~~tlfVgnLp--~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~ 52 (213)
T 4f02_A 9 SAPSYPMASLYVGDLH--PDVT--------EAMLYEKFSPAGPILSIRVCRDMI 52 (213)
T ss_dssp ------CCEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCCCcEEEEeCCC--CCCC--------HHHHHHHHHhhCCEEEEEEecccC
Confidence 3445677889999983 3333 357888899999999999998554
No 49
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=95.84 E-value=0.018 Score=35.19 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.5
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
...+++.|.+.|+- .++. .+|+++-+++||.|.+|.|++...
T Consensus 38 ~~~~~~~l~V~nLp--~~~~--------~~~l~~~F~~~G~i~~v~i~~~~~ 79 (139)
T 1u6f_A 38 EPDVLRNLMVNYIP--TTVD--------EVQLRQLFERYGPIESVKIVCDRE 79 (139)
T ss_dssp CTTTTSEEEEESCS--TTCC--------HHHHHHHHHHHSCEEEEEEEEETT
T ss_pred CCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEEcCC
Confidence 34566788899983 3332 357888999999999999988654
No 50
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.84 E-value=0.042 Score=31.86 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=32.0
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
....+++.|.+.|+ +.++. .+|+++-+++||.|.+|.|++..
T Consensus 10 ~~~~~~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 2dnh_A 10 SRGGRDRKLFVGML--NKQQS--------EEDVLRLFQPFGVIDECTVLRGP 51 (105)
T ss_dssp CSCCCCCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEEEEECS
T ss_pred ccCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECC
Confidence 34456788889998 33333 35688889999999999999865
No 51
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=95.83 E-value=0.044 Score=34.15 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=32.1
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
..|++.|.+.|+= ..+. ..+|++.+++-+++||.|.+|.+++
T Consensus 26 ~~p~~~LfV~nL~--~~~~----e~~L~~~L~~~F~~~G~I~~v~i~~ 67 (127)
T 2a3j_A 26 TEPSQVVLITNIN--PEVP----KEKLQALLYALASSQGDILDIVVDL 67 (127)
T ss_dssp CSCCSEEEEESCC--TTSC----HHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCCCCEEEEeCCC--CCCC----HHHHHHHHHHHhccCCCeEEEEecc
Confidence 3567788899884 2232 2358888889999999999999976
No 52
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.80 E-value=0.017 Score=33.32 Aligned_cols=42 Identities=14% Similarity=0.008 Sum_probs=31.7
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeE-EEEecCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVR-SLEIPRPIE 61 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~-~V~Iprp~~ 61 (74)
+..+++.|.+.|+= .+.. .+|+++-+++||.|. ++.|++...
T Consensus 5 ~~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~~v~i~~~~~ 47 (99)
T 2div_A 5 SSGMAASLWMGDLE--PYMD--------ENFISRAFATMGETVMSVKIIRNRL 47 (99)
T ss_dssp CCSSSSEEEECSCC--TTCC--------HHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred CCCCccEEEEeCCC--CCCC--------HHHHHHHHHHhCCcceEEEEeecCC
Confidence 45677888899983 3332 357888899999999 999988654
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.79 E-value=0.049 Score=31.79 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=36.2
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 11 ~~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 62 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSF--DSE--------EEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFA 62 (111)
T ss_dssp CCCCCCCEEEESCCT--TCC--------HHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEE
T ss_pred cCCCCCEEEEECCCC--CCC--------HHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEE
Confidence 345678888998843 232 3578888999999999999987654334455544
No 54
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.79 E-value=0.015 Score=36.66 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=34.1
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
.+++.|.+.|+ +.+.. .+|+++.+++||.|.+|.|++...+... -|..||
T Consensus 102 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV 151 (196)
T 1l3k_A 102 LTVKKIFVGGI--KEDTE--------EHHLRDYFEQYGKIEVIEIMTDRGSGKK--RGFAFV 151 (196)
T ss_dssp -CCSEEEEECC--TTTCC--------HHHHHHHHTTTSCEEEEEEEECTTTCCE--EEEEEE
T ss_pred CCcceEEEeCC--CCCCC--------HHHHHHHHhcCCCeEEEEEeecCCCCCc--cceEEE
Confidence 45678889997 33332 3678999999999999999986543222 344454
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.76 E-value=0.049 Score=33.57 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=37.2
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.....+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 40 ~~~~~~~~~l~V~nLp~--~~t--------e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV 93 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSL--YTT--------ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 93 (129)
T ss_dssp SSCCCCSSCBCEETCTT--SCC--------HHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEE
T ss_pred CCCCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEE
Confidence 34456778888888733 232 2478888999999999999987654344455544
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.74 E-value=0.065 Score=31.35 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=35.4
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 24 ~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 73 (110)
T 1oo0_B 24 VEGWILFVTSIHE--EAQ--------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 73 (110)
T ss_dssp TTBEEEEEESCCT--TCC--------HHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEE
T ss_pred CCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEE
Confidence 5577899999843 332 3568889999999999999886544334455544
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.74 E-value=0.038 Score=32.17 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=36.6
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCC-CCCCceEEE
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIEN-VDVPGCGKA 71 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~-~~~~gvGkV 71 (74)
.+..+++.|.+.|+= .+.. .+|+++-+++|| |.+|.|++.... ....|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV 62 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLP--YDVT--------EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYA 62 (104)
T ss_dssp CCSSSCEEEEEESCC--SSCC--------HHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEE
T ss_pred CCCCCCCEEEEeCCC--CcCC--------HHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEE
Confidence 455678889999983 3332 357888999999 999999987653 233455544
No 58
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.73 E-value=0.014 Score=32.05 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 39 EDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 39 eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+|+++-+++||.|.++.+++...+....|.|.|
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV 47 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 47 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEE
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEE
Confidence 468888999999999999987654344455543
No 59
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.68 E-value=0.028 Score=35.12 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=31.3
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+= .++. .+||++-+++||.|.+|.|++...
T Consensus 37 ~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLS--FYTT--------EEQIYELFSKSGDIKKIIMGLDKM 76 (156)
T ss_dssp TTCCEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEecCC
Confidence 467889899984 2332 357889999999999999988654
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.68 E-value=0.031 Score=32.29 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEE--------EEecCCCC
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRS--------LEIPRPIE 61 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~--------V~Iprp~~ 61 (74)
..+..+++.|.+.|+= .+.. .+|+++-+++||.|.+ +.|++...
T Consensus 7 ~~~~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 58 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLG--ENVT--------IESVADYFKQIGIIKTNKKTGQPMINLYTDRE 58 (99)
T ss_dssp CCSCCCCSEEEEECCC--SSCC--------HHHHHHHHTTTSCBCEETTTTEESEEEEECTT
T ss_pred CCCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHHhCCEeeccccccccEEEEecCC
Confidence 3445667788899983 3332 3678899999999999 99988654
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.061 Score=31.13 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=35.6
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 10 ~~~~~~l~V~nLp~--~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 60 (103)
T 2dnm_A 10 VDGMITLKVDNLTY--RTS--------PDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60 (103)
T ss_dssp CSCCCEEEEESCCT--TCC--------HHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEE
T ss_pred CCCCeEEEEeCCCC--CCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEE
Confidence 35678888999843 232 3578889999999999999986653333455544
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.61 E-value=0.08 Score=31.83 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=36.2
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
....+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++... ....|.|.|
T Consensus 2 ~e~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV 53 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNR--ETN--------EKMLKAVFGKHGPISEVLLIKDRT-SKSRGFAFI 53 (116)
T ss_dssp CTTCSCCEEEEECCTT--TCC--------HHHHHHHHHTSSCCSEEEEECSTT-TTCCCEEEE
T ss_pred CCCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCEEEEEEEECCC-CCcccEEEE
Confidence 3456677888998843 232 357888899999999999998763 233455544
No 63
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.60 E-value=0.044 Score=36.77 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=32.1
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
....+++.|.+.|+- .+.. .+|+++.|++||.|.+|.+.+..
T Consensus 202 ~~~~~~~~l~v~nl~--~~~~--------~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 202 SENPPNHILFLTNLP--EETN--------ELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred cCCCCCCEEEEeCCC--CcCC--------HHHHHHHHHhcCCeEEEEEecCC
Confidence 445578899999984 2332 36889999999999999998643
No 64
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.59 E-value=0.025 Score=33.81 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=30.2
Q ss_pred CCcccCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEec
Q psy2203 3 PPWDRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIP 57 (74)
Q Consensus 3 ~~~d~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ip 57 (74)
|+.....+..+++.|.+.|+ +.+.. .+|+++-+++||.|.++.+.
T Consensus 20 p~~~~~~~~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 20 HMHHRQEGELSNTRLFVRPF--PLDVQ--------ESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp --------CCSCSEEEECSS--CTTCC--------HHHHHHHHTTTSCCCEEEEE
T ss_pred CcccccCCCCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCEEEEEEE
Confidence 45555666788899999998 33333 35788999999999999998
No 65
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.58 E-value=0.035 Score=34.04 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=34.9
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+++.|.+.|+= .+.. .+|+++-+++||.|.+|.+++...+....|.|.|
T Consensus 2 ~~~~l~v~nLp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 50 (167)
T 2cjk_A 2 ESCKMFIGGLN--WDTT--------EDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 50 (167)
T ss_dssp GGGEEEECSCC--TTCC--------HHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEE
T ss_pred CCcEEEEeCCC--CCCC--------HHHHHHHHHhCCCEEEEEEEECCCCCCccceEEE
Confidence 56778888873 3332 3568888999999999999987654344566655
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.57 E-value=0.03 Score=33.41 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=35.1
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+-.. .. .+|+++-+++||.|.+|.|++... ...-|.|.|
T Consensus 7 ~~~~~~~lfV~~Lp~~--~t--------e~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV 57 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTD--AT--------LDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFV 57 (103)
T ss_dssp SCSGGGCEEEECCCTT--CC--------HHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEE
T ss_pred ccCCCCEEEEECCCCC--CC--------HHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEE
Confidence 3455677778887432 22 367888999999999999999765 234455544
No 67
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.57 E-value=0.032 Score=35.58 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
.+++.|.+.|+=. ++. .+||++.|++||.|.++.|++...+... -|..||
T Consensus 123 ~~~~~l~v~nlp~--~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~g~~--~g~afV 172 (216)
T 2qfj_A 123 RAFNRIYVASVHQ--DLS--------DDDIKSVFEAFGKIKSATLARDPTTGKH--KGYGFI 172 (216)
T ss_dssp TTSCEEEEECCCT--TCC--------HHHHHHHHTTSSCEEEEEEEECTTTCCE--EEEEEE
T ss_pred CCCcEEEEeCCCC--cCC--------HHHHHHHHhccCCeeEEEEEecCCCCCc--CceEEE
Confidence 3557888998742 222 4689999999999999999987543222 344454
No 68
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.57 E-value=0.04 Score=33.84 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=30.9
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+= .+.. .+|+++.+++||.|.++.+++...
T Consensus 93 ~~~~~l~v~nl~--~~~t--------~~~l~~~F~~~G~i~~v~~~~~~~ 132 (175)
T 3nmr_A 93 VEDRKLFIGMIS--KKCT--------ENDIRVMFSSFGQIEECRILRGPD 132 (175)
T ss_dssp GGGSEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCeEEEcCCC--CcCC--------HHHHHHHHHhCCCEEEEEEEECCC
Confidence 367788899983 2332 367889999999999999998754
No 69
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.53 E-value=0.05 Score=30.95 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEE-EecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSL-EIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V-~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+=. +.. .+|+++-+++||.|.++ .|++........|.|.|
T Consensus 2 ~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV 53 (96)
T 1x5t_A 2 SSGSSGIFIGNLDP--EID--------EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFI 53 (96)
T ss_dssp CSCCCEEEEECCCT--TCC--------HHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEE
T ss_pred CCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEE
Confidence 35677888898743 232 36788899999999999 99987544344455544
No 70
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.53 E-value=0.082 Score=30.78 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=34.6
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCC-eEEEEec-CCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGI-VRSLEIP-RPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~-V~~V~Ip-rp~~~~~~~gvGkV 71 (74)
..+++-|.+.|+= .+.. .+|+++.+++||. |.++.++ +........|.|.|
T Consensus 5 s~~~~~l~V~nLp--~~~t--------~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV 57 (109)
T 2dis_A 5 SSGNCRLFIGGIP--KMKK--------REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFV 57 (109)
T ss_dssp CCCSEEEEEECCC--TTSC--------HHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEE
T ss_pred ccCCCEEEEeCCC--CcCC--------HHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEE
Confidence 4567778889883 2332 3578899999998 9999998 44433234455544
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.50 E-value=0.016 Score=31.80 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 38 CEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 38 ~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.+|+++-+++||.|.++.+++.+.+....|.|.|
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 46 (75)
T 2mss_A 13 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 46 (75)
T ss_dssp HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEE
Confidence 3578889999999999999987654334455543
No 72
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.48 E-value=0.016 Score=31.68 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 39 EDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 39 eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+|+++-+++||.|.++.+++...+....|.|.|
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 46 (75)
T 1iqt_A 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 46 (75)
T ss_dssp HHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEE
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEE
Confidence 578888999999999999987654444555544
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.48 E-value=0.098 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.0
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCC
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIEN 62 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~ 62 (74)
..+-|.+.|+= .+..+ ++|++.+++-+++||.|.+|.|++...+
T Consensus 8 ~~~~l~V~nL~--~~~~~----~~l~~~l~~~F~~~G~v~~v~i~~~~~~ 51 (96)
T 2dgx_A 8 NGADVQVSNID--YRLSR----KELQQLLQEAFARHGKVKSVELSPHTDY 51 (96)
T ss_dssp SCEEEEEESCC--TTSCH----HHHHHHHHHHHHHHSCEEEEEECSCCST
T ss_pred CCCEEEEECCC--CCCCH----HHHHHHHHHhccccCcEEEEEEEeCCCC
Confidence 44567788873 22322 3466667799999999999999986644
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.42 E-value=0.062 Score=31.18 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++...
T Consensus 21 ~~~~~l~V~nlp~--~~t--------~~~l~~~f~~~G~i~~v~i~~~~~ 60 (106)
T 1p27_B 21 VEGWILFVTGVHE--EAT--------EEDIHDKFAEYGEIKNIHLNLDRR 60 (106)
T ss_dssp TTBEEEEEECCCT--TCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCEEEEeCCCC--CCC--------HHHHHHHHhccCCeEEEEEEecCC
Confidence 4567888998843 332 256888899999999999988654
No 75
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=95.42 E-value=0.016 Score=34.21 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=27.7
Q ss_pred eEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 15 ~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
+-|.+.|+ |.+..+ +|+++-+++||.|.++.|++...
T Consensus 20 t~lfV~nL--p~~~te--------~~L~~~F~~~G~I~~v~i~~d~~ 56 (99)
T 4fxv_A 20 TNLIVNYL--PQNMTQ--------DELRSLFSSIGEVESAKLIRDKV 56 (99)
T ss_dssp SEEEEESC--CTTCCH--------HHHHHHHHTTSCEEEEEEEECSS
T ss_pred CEEEEeCC--CCCCCH--------HHHHHHHHhcCCEEEeEeeecCC
Confidence 34778888 444432 47888899999999999998654
No 76
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.41 E-value=0.046 Score=40.44 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=35.8
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+- .++. .++|++.+++||.|++|.|+....+...-|.|.|
T Consensus 98 ~~~~~~~lfV~nL~--~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV 149 (437)
T 3pgw_S 98 QGDAFKTLFVARVN--YDTT--------ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149 (437)
T ss_pred cCCCCCEEEEeCCC--CCCC--------HHHHHHHHHHcCCeeEEEeeccCCCCCccceEEE
Confidence 34567789999973 2332 3578888999999999999886543334455544
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.38 E-value=0.11 Score=30.36 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
....+++.|.+.|+= .++. .+|+++-+++||.|.+|.|++.
T Consensus 17 ~~~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~v~~~~i~~~ 57 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLP--PDIR--------TKDIEDVFYKYGAIRDIDLKNR 57 (109)
T ss_dssp CCCCCSSEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEECCS
T ss_pred CCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEEC
Confidence 344567888899983 3443 2578899999999999999764
No 78
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=95.38 E-value=0.02 Score=31.99 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=28.2
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
++.|.+.|+ +.+.. .+|+++.+++||.|.++.|++...
T Consensus 4 ~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~ 41 (88)
T 4a8x_A 4 PTKVHIGRL--TRNVT--------KDHIMEIFSTYGKIKMIDMPVERM 41 (88)
T ss_dssp CCEEEEECC--CTTCC--------HHHHHHHHHTTSCEEEEECCEETT
T ss_pred CCEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEEeCCC
Confidence 456778887 33332 357888999999999999988654
No 79
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.36 E-value=0.032 Score=31.30 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=32.9
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
++.|.+.|+ +.+.. .+|+++-+++||.|.++.+++........|.|.|
T Consensus 6 ~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 53 (89)
T 3ucg_A 6 ARSIYVGNV--DYGAT--------AEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYI 53 (89)
T ss_dssp HTEEEEESC--CTTCC--------HHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEE
T ss_pred CCEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEE
Confidence 466778887 23332 3578888999999999999986543334455544
No 80
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.34 E-value=0.018 Score=31.99 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=27.1
Q ss_pred eEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCC
Q psy2203 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIEN 62 (74)
Q Consensus 15 ~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~ 62 (74)
.-|.+.|+ +.+.. .+|+++.+++||.|.++.+++....
T Consensus 2 ~~l~V~nl--p~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~ 39 (83)
T 3md1_A 2 FNLFVGDL--NVNVD--------DETLRNAFKDFPSYLSGHVMWDMQT 39 (83)
T ss_dssp EEEEEECC--CTTCC--------HHHHHHHHTTSTTEEEEEEEECTTT
T ss_pred eEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEEcCCC
Confidence 34567776 23332 3578889999999999999886543
No 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.31 E-value=0.039 Score=32.00 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=32.1
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
...+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++...
T Consensus 11 ~~~~~~~l~V~nlp~--~~t--------~~~l~~~f~~~G~i~~v~i~~~~~ 52 (103)
T 2cq0_A 11 RADDNATIRVTNLSE--DTR--------ETDLQELFRPFGSISRIYLAKDKT 52 (103)
T ss_dssp CCSSSEEEEEESCCT--TCC--------HHHHHTTSTTTCCEEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhCCCeEEEEEeecCC
Confidence 456788899999843 232 357888899999999999998654
No 82
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=95.24 E-value=0.046 Score=31.19 Aligned_cols=43 Identities=9% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
...|++.|.+.|+= .+..+ ++|++.+.+-+++||.|.+|.+++
T Consensus 4 ~~~~~~~l~V~nLp--~~~~~----~~l~~~l~~~f~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 4 ETRPNHTIYINNLN--EKIKK----DELKKSLHAIFSRFGQILDILVSR 46 (97)
T ss_dssp --CCCSEEEEESCC--TTSCH----HHHHHHHHHHHGGGSCEEEEECCH
T ss_pred CCCCCCEEEEeCCC--CCCCH----HHHHHHHHHHHHhCCCEEEEEEEc
Confidence 34678889999963 33332 357777779999999999999984
No 83
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.23 E-value=0.06 Score=32.95 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=30.0
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
..+++.|.+.|+= .+..+ +|+++-+++||.|.+|.|.+.
T Consensus 13 ~~~~~~LfV~nLp--~~vte--------~dL~~lF~~fG~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLP--IDVTE--------GEVISLGLPFGKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCC--TTSCH--------HHHHHHHHHHCCEEEEEEETT
T ss_pred CCCCCEEEEeCCC--CCCCH--------HHHHHHHHhcCCEEEEEEEcC
Confidence 4567888899873 34432 467888999999999999873
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.21 E-value=0.047 Score=31.72 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=32.4
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
..+..+++.|.+.|+= .+.. .+|+++-+++|| |.+|.|++...
T Consensus 9 ~~~~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~g-i~~v~i~~~~~ 51 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLP--FNTV--------QGDIDAIFKDLS-IRSVRLVRDKD 51 (103)
T ss_dssp CCCSSSCEEEEEESCC--TTCC--------HHHHHHHTTTSC-EEEEEEEECSS
T ss_pred CCCCCCCeEEEEeCCC--CCCC--------HHHHHHHHHhCC-ceEEEEeecCC
Confidence 3456778899999983 3332 357888899998 99999998764
No 85
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=95.16 E-value=0.085 Score=29.72 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
+..+++.|.+.|+= .+.. .+|+++-+++||.|.++.|++
T Consensus 4 ~~~~~~~l~V~nlp--~~~t--------~~~l~~~f~~~G~v~~~~i~~ 42 (92)
T 2dgv_A 4 GSSGACQIFVRNLP--FDFT--------WKMLKDKFNECGHVLYADIKM 42 (92)
T ss_dssp SSSSCCEEEECSCC--TTCC--------HHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCcEEEEeCCC--CCCC--------HHHHHHHHHhcCCEEEEEEEc
Confidence 44667888899984 2332 357888999999999999997
No 86
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.16 E-value=0.083 Score=31.57 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.8
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
....|+++|.+.|+=. +.. .+|+++-+++||.|.+|.+++.
T Consensus 10 ~~~~p~~~l~V~nLp~--~~t--------e~~L~~~F~~fG~v~~v~i~~~ 50 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPG--EVT--------ETEVIALGLPFGKVTNILMLKG 50 (101)
T ss_dssp CCSSCCSEEEEESCCT--TCC--------HHHHHHTTTTTSCEEEEEEETT
T ss_pred ccCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCEEEEEEECC
Confidence 3456889999999853 332 2477889999999999999873
No 87
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.12 E-value=0.061 Score=32.85 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=31.3
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+-. ++. .+|+++.+++||.|.++.+++...
T Consensus 87 ~~~~~l~v~nl~~--~~t--------~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 87 IKDTNLYVTNLPR--TIT--------DDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp TTTCEEEEESCCT--TCC--------HHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCCCCEEEeCCCC--CCC--------HHHHHHhhhcCCcEEEEEEEEcCC
Confidence 4677888999853 222 367899999999999999998764
No 88
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.05 E-value=0.076 Score=32.62 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+-. +.. .+|+++.+++||.|.++.+++...
T Consensus 92 ~~~~~l~v~nlp~--~~t--------~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 92 PGAHKLFIGGLPN--YLN--------DDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp TTTTCEEEECCCT--TCC--------HHHHHHHHHTTSCEEEEEEEECTT
T ss_pred CCCCEEEEEcCCC--cCC--------HHHHHHHHHhcCCceEEEEEecCC
Confidence 3467788888843 332 468899999999999999988753
No 89
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.11 Score=31.51 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=32.2
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIEN 62 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~ 62 (74)
...+++.|.+.|+= .+.. .+|+++.+++||.|.++.+++...+
T Consensus 83 ~~~~~~~l~v~nl~--~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~ 125 (166)
T 3md3_A 83 SSDDTFNLFVGDLN--VNVD--------DETLRNAFKDFPSYLSGHVMWDMQT 125 (166)
T ss_dssp CCTTCEEEEEESCC--TTCC--------HHHHHHHHTTSTTEEEEEEEECTTT
T ss_pred CCCCCceEEECCCC--CCCC--------HHHHHHHHhccCCeeEEEEEecCCC
Confidence 44667889999973 2232 2678889999999999999986543
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.05 E-value=0.073 Score=32.46 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=37.3
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEE--EEecCCCCCCCCCceEEE
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRS--LEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~--V~Iprp~~~~~~~gvGkV 71 (74)
....+++-|.+.|+= .+..+ +|+++.+++||.|.. |.|++...+....|.|.|
T Consensus 18 ~~~~~~~~lfV~nL~--~~~te--------~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV 72 (131)
T 2m2b_A 18 SSENANDTIILRNLN--PHSTM--------DSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFI 72 (131)
T ss_dssp CCSCCCCEEEECSCC--TTCCS--------HHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEE
T ss_pred CCCCCCCEEEEeCCC--CCCCH--------HHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEE
Confidence 344667788899973 33333 578888999999976 999887654445566665
No 91
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.86 E-value=0.092 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=31.2
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
...+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++..
T Consensus 13 ~~~~~~~l~v~nlp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~ 53 (100)
T 2do4_A 13 TSLEKHKLFISGLPF--SCT--------KEELEEICKAHGTVKDLRLVTNR 53 (100)
T ss_dssp SCCCCSCEEEESCCT--TCC--------HHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhCCCeEEEEEEECC
Confidence 445677888999843 332 35688899999999999998865
No 92
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.86 E-value=0.069 Score=31.63 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...+ ..|.|.|
T Consensus 25 ~~~~~~~l~V~nLp--~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~--~kg~afV 74 (109)
T 2err_A 25 NKSQPKRLHVSNIP--FRFR--------DPDLRQMFGQFGKILDVEIIFNERG--SKGFGFV 74 (109)
T ss_dssp CTTCCCEEEEESCC--TTCC--------HHHHHHHGGGTCCCSCEEECCBTTB--CTTEEEE
T ss_pred CCCCCCEEEEECCC--CcCC--------HHHHHHHHHhcCCEEEEEEEECCCC--CceEEEE
Confidence 34567788899983 3332 3568889999999999999986432 3455544
No 93
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.85 E-value=0.04 Score=33.69 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=33.4
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+++.|.+.|+= .+.. .+|+++-+++||.|.++.+.+...+....|.|.|
T Consensus 2 ~~~~l~v~nlp--~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 50 (168)
T 1b7f_A 2 SNTNLIVNYLP--QDMT--------DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFV 50 (168)
T ss_dssp CCSEEEEECCC--TTCC--------HHHHHHHHHTTSCEEEEECCEETTTTEECSEEEE
T ss_pred CccEEEEeCCC--CCCC--------HHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEE
Confidence 56778888883 3333 3568888999999999999886543223344433
No 94
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.79 E-value=0.064 Score=32.35 Aligned_cols=40 Identities=8% Similarity=0.133 Sum_probs=31.1
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
..|+++|.+.|+=. .+. -.+|+++-+++||.|.+|.|.+.
T Consensus 12 ~~p~~~l~V~nLp~-~~~--------te~dL~~lF~~fG~V~~v~i~~~ 51 (102)
T 1x4d_A 12 VETRRVVHIMDFQR-GKN--------LRYQLLQLVEPFGVISNHLILNK 51 (102)
T ss_dssp CCCCCEEEEESCCC-SSS--------HHHHHHTTTGGGSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCC-CcC--------CHHHHHHHHHhcCCEEEEEEEcC
Confidence 45889999999754 122 24578889999999999999874
No 95
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.76 E-value=0.073 Score=35.16 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=28.3
Q ss_pred CCCCCceEEE--eeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 9 VPPLRFSVLC--LLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 9 ~~~~ps~vv~--L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
.+..|++++. +.|+- ..+.+ +|+++-+++||.|.+|.|+.
T Consensus 39 ~~~~ps~vl~l~VgNL~--~~vte--------d~L~~~Fs~fG~V~~V~i~~ 80 (164)
T 1sjr_A 39 AMAGQSPVLRIIVENLF--YPVTL--------DVLHQIFSKFGTVLKIITFT 80 (164)
T ss_dssp -CCCCCCEEEEEECSCC--SCCCH--------HHHHHHHHHHSCEEEEEEEE
T ss_pred CCCCCCceEEEEEeCcC--CCCCH--------HHHHHHHHhcCCEEEEEEEe
Confidence 3456777765 67884 23332 46788899999999999974
No 96
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.76 E-value=0.19 Score=29.40 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=31.7
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
...+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++...
T Consensus 11 ~~~~~~~l~V~nlp~--~~~--------~~~l~~~f~~~G~i~~~~i~~~~~ 52 (114)
T 2do0_A 11 AGRLGSTVFVANLDY--KVG--------WKKLKEVFSMAGVVVRADILEDKD 52 (114)
T ss_dssp CCCCCSCEEEESCCT--TCC--------HHHHHHHHTTTSCEEEEEEEECTT
T ss_pred cCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCeEEEEEEECCC
Confidence 446678888999843 332 356888899999999999998653
No 97
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.74 E-value=0.055 Score=30.53 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=29.9
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
.+++-|.+.|+ +.++. .+|+++-+++||.|.++.|++.+
T Consensus 3 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~ 41 (88)
T 1wf0_A 3 SGSSGVFVGRC--TGDMT--------EDELREFFSQYGDVMDVFIPKPF 41 (88)
T ss_dssp SCCCEEEEESC--CSSSC--------HHHHHHHSTTTSCCCEEECCSSC
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCeeEEEEecCC
Confidence 45677888888 34443 35788899999999999999753
No 98
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.73 E-value=0.027 Score=32.33 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...
T Consensus 3 ~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 3 SGSSGLFIKNLN--FSTT--------EETLKGVFSKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCCCEEEESCC--TTCC--------HHHHHHHHHTTSCEEEEEEEEEEC
T ss_pred CCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEecCC
Confidence 467788899883 2332 357888899999999999997543
No 99
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.70 E-value=0.092 Score=30.33 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
....+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++.
T Consensus 10 ~~~~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDD--GID--------DERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp CCCSSCCCEEEECCCT--TCC--------HHHHHHTTTTTSCEEEEEEEEC
T ss_pred cCCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCEEEEEEEcC
Confidence 3455777888999832 332 2578888999999999999986
No 100
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.65 E-value=0.073 Score=31.39 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=34.4
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 24 ~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 72 (114)
T 2cq4_A 24 DARTVFCMQLA--ARIR--------PRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 72 (114)
T ss_dssp HHTEEEEESCC--TTCC--------HHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEE
T ss_pred CCCEEEEeCCC--CCCC--------HHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEE
Confidence 35678888883 3332 2568888999999999999987654344555554
No 101
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.65 E-value=0.064 Score=33.65 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=32.1
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
....+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|.+...
T Consensus 8 ~~~~~~~~l~V~nLp--~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~ 50 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLS--FETT--------DESLRSHFEQWGTLTDCVVMRDPN 50 (196)
T ss_dssp CCCGGGGEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhCCCEEEEEEEEcCC
Confidence 344567888899983 3443 357888899999999999988654
No 102
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=94.64 E-value=0.051 Score=31.29 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=27.3
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
+..++..|.+.|+=. +.. .+|+++.+++||.|.++.|++.
T Consensus 7 ~~~~~~~l~V~~Lp~--~~t--------e~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTE--DMT--------AEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp ----CCEEEEESCCT--TCC--------HHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCCCEEEEeCCCC--CCC--------HHHHHHHHhccCCEEEEEEeeC
Confidence 345566677777633 222 3678999999999999999984
No 103
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=94.63 E-value=0.12 Score=33.60 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=35.1
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+ +.++. .+|+++-+++||.|.+|.|++... ....|.|.|
T Consensus 85 ~~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~-g~~kG~afV 134 (177)
T 2f3j_A 85 VETGAKLLVSNL--DFGVS--------DADIQELFAEFGTLKKAAVDYDRS-GRSLGTADV 134 (177)
T ss_dssp CTTCEEEEEECC--CSCCC--------HHHHHHHHHHTSCCSEEEECCCTT-SSCSCCEEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCC-CCEeeEEEE
Confidence 345678889998 33332 356888899999999999998762 234455544
No 104
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=94.61 E-value=0.13 Score=34.43 Aligned_cols=42 Identities=10% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
..+++.|.+.|+= .++.+ ++|+..+.+-+++||.|.+|.|.+
T Consensus 6 ~~~~~~l~V~nlp--~~~~~----~~l~~~L~~~F~~~G~i~~v~~~~ 47 (282)
T 3pgw_A 6 TRPNHTIYINNLN--EKIKK----DELKKSLYAIFSQFGQILDILVSR 47 (282)
T ss_pred CCCCCEEEEeCCC--CCCCH----HHHHHHHHHHHhccCCeEEEEEcC
Confidence 4678899999984 33333 356666778899999999999998
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=94.60 E-value=0.025 Score=31.96 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 38 CEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 38 ~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.+|+++-+++||.|.++.+++...+....|.|.|
T Consensus 15 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 48 (90)
T 2ki2_A 15 SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48 (90)
T ss_dssp HHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEE
Confidence 3567888899999999999987654334444443
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.56 E-value=0.057 Score=31.99 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=34.2
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 26 ~~~~l~V~nLp--~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 74 (116)
T 1x4b_A 26 QFRKLFIGGLS--FETT--------EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFV 74 (116)
T ss_dssp HHTEEEEECCT--TCCC--------HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEE
T ss_pred CCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEE
Confidence 35678888873 3333 2568888999999999999987654344455544
No 107
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.49 E-value=0.081 Score=35.62 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCCceEEEeeCCCCCCc-CCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 11 PLRFSVLCLLNMVTPDE-LKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~e-l~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
..+++.|.+.|+= .+ .. .+|+++.+++||.|.+|.|++...
T Consensus 207 ~~~~~~l~v~nlp--~~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 207 TLEGREIMIRNLS--TELLD--------ENLLRESFEGFGSIEKINIPAGQK 248 (292)
T ss_dssp CCTTTEEEEEEEC--TTTCC--------HHHHHHHHGGGSCEEEEECCSCCC
T ss_pred CCCCceEEEECCC--cccCC--------HHHHHHHHhccCCeeEEEEEecCC
Confidence 4567889999973 23 22 368999999999999999998654
No 108
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.48 E-value=0.27 Score=30.29 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
...+++.|.+.|+ +.+..+ +|+++-+++||.|.+|.|++.
T Consensus 69 ~~~~~~~l~V~nl--~~~~t~--------~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 69 SCPLDCKVYVGNL--GNNGNK--------TELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp SSTTSCEEEEESC--CSCCSC--------HHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCCEEEEeCC--CCCCCH--------HHHHHHHHhhCCEEEEEEeeC
Confidence 3456778889998 334443 467888899999999999985
No 109
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.071 Score=30.67 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 8 LVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 8 ~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
+....+++.|.+.|+=. .+.. .+|+++-+++||.|.++.|++
T Consensus 4 ~~~~~~~~~l~V~nlp~-~~~t--------~~~l~~~F~~~G~v~~v~i~~ 45 (96)
T 2kvi_A 4 MHNIPPKSRLFIGNLPL-KNVS--------KEDLFRIFSPYGHIMQINIKN 45 (96)
T ss_dssp -----CCEEEEEESSTT-SCCC--------HHHHHHHHTTTCCCCEEEEET
T ss_pred cccCCCCCEEEEeCCCc-ccCC--------HHHHHHHHHhcCCEEEEEEeC
Confidence 34456788899999842 1332 357888999999999999974
No 110
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.15 Score=29.33 Aligned_cols=41 Identities=12% Similarity=-0.032 Sum_probs=30.8
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHh-cCCeEEEEecCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNK-YGIVRSLEIPRPI 60 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K-~G~V~~V~Iprp~ 60 (74)
...+++.|.+.|+=. ++. .+|+++-+++ ||.|.+|.|++..
T Consensus 5 ~~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~~G~v~~v~i~~~~ 46 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTP--DVD--------DGMLYEFFVKVYPSCRGGKVVLDQ 46 (104)
T ss_dssp CSSCCCCEEEECCCT--TCC--------HHHHHHHHHHHCTTEEEEEEEECT
T ss_pred CCCCCcEEEEeCCCC--CCC--------HHHHHHHHHHhCCCeEEEEEEECC
Confidence 345677788898743 232 2578888999 9999999999865
No 111
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.37 E-value=0.11 Score=29.38 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.3
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
...+++.|.+.|+ +.+.. .+|+++-+++||.|.++.+++
T Consensus 6 ~~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~~~~ 44 (92)
T 2dgt_A 6 SGKASTKLHVGNI--SPTCT--------NQELRAKFEEYGPVIECDIVK 44 (92)
T ss_dssp CCCSSEEEEEESC--CSSCC--------HHHHHHHHHTTSCCCEEEECS
T ss_pred CCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEC
Confidence 4567788889998 33443 357888999999999999986
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.34 E-value=0.09 Score=32.70 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
...|+++|.+.|+=.. .. .+|+++-+++||.|.+|.|++.
T Consensus 27 ~~~ps~~LfVgNLp~~--vt--------e~dL~~lF~~fG~V~~v~i~~~ 66 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPID--VT--------EGEVISLGLPFGKVTNLLMLKG 66 (119)
T ss_dssp CSSCCSEEEEESCCTT--CC--------HHHHHHHHTTTSCCCEEEEEGG
T ss_pred cCCCCCEEEEeCCCCC--CC--------HHHHHHHHHhcCCEEEEEEeCC
Confidence 4567899999997542 32 3578899999999999999873
No 113
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.34 E-value=0.14 Score=32.02 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCceEEE--eeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 12 LRFSVLC--LLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 12 ~ps~vv~--L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
.|++++. +.|+-.. +. .+++++-+++||.|.+|.|++
T Consensus 21 ~ps~vl~l~V~NL~~~--vt--------~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYP--IT--------VDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp CCCSEEEEEEESCCSC--CC--------HHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCcEEEEEEcCcCCC--CC--------HHHHHHHHHhcCCEEEEEEEe
Confidence 5788875 4786532 32 247889999999999999976
No 114
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.33 E-value=0.043 Score=33.85 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
..|+++|.+.|+=.. ...+ +|+++.|++||.|.+|.|.+.
T Consensus 22 ~~p~~~l~V~NLp~~-~~te--------~~L~~lF~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 22 QELGRVIHLSNLPHS-GYSD--------SAVLKLAEPYGKIKNYILMRM 61 (112)
T ss_dssp SCCCCEEEEESCCCS-SCCS--------HHHHTTTTTTSCCSEEEEETT
T ss_pred CCCCCEEEEeCCCCc-cCCH--------HHHHHHHHhcCCEEEEEEecC
Confidence 457899999998642 1333 478899999999999999864
No 115
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.15 E-value=0.055 Score=31.45 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=31.3
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
...+++.|.+.|+= .+.. .+|+++-+++||.|.+|.|++...
T Consensus 12 ~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~ 53 (105)
T 2dh8_A 12 GADEIGKLFVGGLD--WSTT--------QETLRSYFSQYGEVVDCVIMKDKT 53 (105)
T ss_dssp CSSSSSEECCBSCC--TTCC--------HHHHHHHHHTTSCEEEEEEEECSS
T ss_pred CCCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCeEEEEEeeCCC
Confidence 44667788888873 2232 357888899999999999998654
No 116
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.10 E-value=0.19 Score=31.71 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+-. +.. .+|+++-+++||.|.+|.|++...
T Consensus 70 ~~~~~l~V~nLp~--~~t--------~~~L~~~F~~~G~i~~v~i~~~~~ 109 (165)
T 1rk8_A 70 VEGWILFVTSIHE--EAQ--------EDEIQEKFCDYGEIKNIHLNLDRR 109 (165)
T ss_dssp C-CEEEEEESCCT--TCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCEEEEeCCCC--CCC--------HHHHHHHhhcCCCEEEEEEEecCC
Confidence 4566788999843 332 357888899999999999998654
No 117
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.10 E-value=0.068 Score=32.69 Aligned_cols=49 Identities=8% Similarity=0.173 Sum_probs=33.2
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+++.|.+.|+=. +.. .+|+++.+++||.|.++.+++...+..+.|.|.|
T Consensus 86 ~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 134 (167)
T 2cjk_A 86 KTGKIFVGGIGP--DVR--------PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 134 (167)
T ss_dssp HCEEEEEEEECT--TCC--------HHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEE
T ss_pred CCCeEEECCCCC--CCC--------HHHHHHHHHhCccEEEEEEEEcCCCCccceEEEE
Confidence 356777888632 222 3678889999999999999987543334444433
No 118
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.09 E-value=0.12 Score=34.60 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
.+++.|.+.|+= .++.+ .+|+++.+++||.|.++.|++...+ ..-|..||
T Consensus 182 ~~~~~l~v~nlp--~~~~~-------~~~l~~~f~~~G~i~~v~i~~~~~g---~~~g~afV 231 (284)
T 3smz_A 182 LHSRCLCVDRLP--PGFND-------VDALCRALSAVHSPTFCQLACGQDG---QLKGFAVL 231 (284)
T ss_dssp TSCSEEEEECCC--TTCCC-------HHHHHHHTCSSSCCSEEEEEECSSC---CEEEEEEE
T ss_pred CCccEEEEecCC--cccCC-------HHHHHHHhhCCCCeEEEEEEECCCC---CcccEEEE
Confidence 567888899973 33322 3688999999999999999986533 22455554
No 119
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.91 E-value=0.12 Score=30.34 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.0
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeE--------EEEecCCCCCCCCCceEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVR--------SLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~--------~V~Iprp~~~~~~~gvGkV 71 (74)
...+++.|.+.|+= .+.. .+|+++-+++||.|. +|.|++........|.|.|
T Consensus 11 ~~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV 70 (113)
T 2cpe_A 11 EDSDNSAIYVQGLN--DSVT--------LDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 70 (113)
T ss_dssp CCCCCCEEEEECCC--TTCC--------HHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEE
T ss_pred cCCCCCEEEEcCCC--CCCC--------HHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEE
Confidence 34567788899984 3332 357888999999999 6999886543333444443
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.90 E-value=0.065 Score=32.51 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+-. +.. .+|+++.+++||.|.++.+++...
T Consensus 86 ~~~~~l~v~nl~~--~~t--------~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 86 IRDANLYVSGLPK--TMT--------QKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp GTTCEEEEESCCT--TCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCcEEECCCCC--cCC--------HHHHHHHHHhcCCEeEEEEEecCC
Confidence 3456788888743 222 367999999999999999988653
No 121
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=93.86 E-value=0.067 Score=31.96 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=28.1
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
++.|.+.|+- .+.. .+|+++-+++||.|.+|.|++...
T Consensus 36 ~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~ 73 (124)
T 2jwn_A 36 KRSVYVGNVD--YGST--------AQDLEAHFSSCGSINRITILCDKF 73 (124)
T ss_dssp HTEEEEEEEC--TTCC--------HHHHHHHHHTTSCEEEEEEEEECT
T ss_pred CCEEEEeCCC--CCCC--------HHHHHHHHHhcCCEEEEEEEecCC
Confidence 4667788873 2332 357888899999999999988654
No 122
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=93.64 E-value=0.046 Score=31.14 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHHHhcC--CeEEEEecCCCC
Q psy2203 39 EDIKEECNKYG--IVRSLEIPRPIE 61 (74)
Q Consensus 39 eDv~eEC~K~G--~V~~V~Iprp~~ 61 (74)
+|+++-+++|| .|.++.|++...
T Consensus 16 ~~l~~~F~~~G~~~v~~v~i~~~~~ 40 (90)
T 3p5t_L 16 EDLTEAVHSLGVNDILEIKFFENRA 40 (90)
T ss_dssp HHHHHHHHTTTCCCCCCEEEEECTT
T ss_pred HHHHHHHHHhCCCceEEEEEEecCC
Confidence 57888899999 999999988654
No 123
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=93.57 E-value=0.083 Score=30.48 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
..+++.|.+.|+= .+.. .+|+++-+++||.|.++.|++..
T Consensus 6 ~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~ 45 (102)
T 2xs2_A 6 KIMPNTVFVGGID--VRMD--------ETEIRSFFARYGSVKEVKIITDR 45 (102)
T ss_dssp EEEEEEEEEECCC--TTCC--------HHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHHHhCCCeEEEEEEECC
Confidence 3456778888873 3332 35678889999999999999875
No 124
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.54 E-value=0.23 Score=30.01 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=28.7
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
+++.|.+.|+=. +.. .+|+++-+++||.|.++.+.+...
T Consensus 1 s~~~l~v~nlp~--~~~--------~~~l~~~f~~~G~i~~v~~~~~~~ 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQ--NMT--------QEEFRSLFGSIGEIESCKLVRDKI 39 (167)
T ss_dssp CCSEEEEESCCT--TCC--------HHHHHHHHHTTSCEEEEEEEECTT
T ss_pred CcceEEEcCCCC--CCC--------HHHHHHHHHhcCCeEEEEEEeCCC
Confidence 356777888743 332 356888899999999999988653
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.51 E-value=0.037 Score=31.99 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
.+++.|.+.|+=. +.. .+|+++-+++||.|.++.|++...
T Consensus 6 ~~~~~l~V~nlp~--~~~--------~~~l~~~f~~~G~i~~~~i~~~~~ 45 (104)
T 1p1t_A 6 RSLRSVFVGNIPY--EAT--------EEQLKDIFSEVGPVVSFRLVYDRE 45 (104)
T ss_dssp HHHSCEEEESCCT--TSC--------HHHHHHHHHTTSCCSEEEEEEETT
T ss_pred CCccEEEEeCCCC--cCC--------HHHHHHHHHhcCCeeEEEEEeCCC
Confidence 3567788888742 222 357889999999999999987653
No 126
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.46 E-value=0.038 Score=31.67 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=29.5
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
....+++.|.+.|+ +.+.. .+|+++-+++||.|.++.+++..
T Consensus 10 ~~~~~~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~v~~~~~~~~~ 51 (98)
T 2cqp_A 10 SGKPGPTIIKVQNM--PFTVS--------IDEILDFFYGYQVIPGSVCLKYN 51 (98)
T ss_dssp CCCCSSEEEEEESC--CTTCC--------HHHHHHHTTTSCCCTTTCEEEEC
T ss_pred CCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHHcCCccceEEEEEC
Confidence 34556778889998 33333 35788889999999877666543
No 127
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=93.39 E-value=0.4 Score=27.69 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=28.9
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
....+++.|.+.|+=.. +.. .+|+++-+++||.|.++.|++
T Consensus 17 ~~~~~~~~l~V~nLp~~-~~t--------~~~L~~~F~~~G~v~~v~i~~ 57 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLK-NVS--------KEDLFRIFSPYGHIMQINIKN 57 (97)
T ss_dssp --CCTTCEEEEESCCSS-CCC--------HHHHHHHHGGGSCEEEEEECS
T ss_pred CCCCCCCEEEEeCCCcc-cCC--------HHHHHHHHHhcCCEEEEEEeC
Confidence 34456788889998421 232 357888999999999999953
No 128
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=93.21 E-value=0.16 Score=36.87 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred cCCCCCCceEEEeeCC-CCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 7 RLVPPLRFSVLCLLNM-VTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 7 ~~~~~~ps~vv~L~Nm-~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
-..+..||+.|.+.|. ++-. .+ .+|+++.+++||.|.+|.+++
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~-~t--------e~~L~~~F~~~G~V~~v~~~~ 54 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNG-VS--------RNQLLPVLEKCGLVDALLMPP 54 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGT-CC--------HHHHHHHHHTTSCEEEEECCT
T ss_pred ceecCCCCCEEEEEcCCCCCC-CC--------HHHHHHHHHhcCCeEEEEEeC
Confidence 3456789999999996 2222 22 357899999999999999986
No 129
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=93.20 E-value=0.11 Score=32.13 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=35.0
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.+++.|.+.|+= .+. -.+|+++-+++||.|.+|.|++...+....|.|.|
T Consensus 45 ~~~~~l~V~nLp--~~~--------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV 94 (135)
T 2lea_A 45 EGMTSLKVDNLT--YRT--------SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 94 (135)
T ss_dssp GGCCCEEEECCC--SSC--------HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEE
T ss_pred CCCCEEEEeCCC--CCC--------CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEE
Confidence 446678889883 233 24678889999999999999987654344555544
No 130
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.18 E-value=0.2 Score=31.74 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=32.8
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+++.|.+.|+=. ++. .+|+++-+++||.|.+|.|++........|.|.|
T Consensus 27 ~~~~l~V~nLp~--~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV 75 (216)
T 2qfj_A 27 IMSRVYVGSIYY--ELG--------EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFV 75 (216)
T ss_dssp HHTEEEEECCCT--TCC--------HHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEE
T ss_pred cCCEEEEECCCC--CCC--------HHHHHHHHHhCCCEEEEEEeecCCCCccCceEEE
Confidence 356677888733 332 3568888999999999999886543334555554
No 131
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=93.02 E-value=0.13 Score=31.49 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=32.7
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
++-|.+.|+= .+.. .+|+++-+++||.|.++.|++...+.....-|..||
T Consensus 3 ~~~l~V~nLp--~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV 52 (175)
T 3nmr_A 3 AIKMFVGQVP--RTWS--------EKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 52 (175)
T ss_dssp CEEEEEESCC--TTCC--------HHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEE
T ss_pred ceEEEEeCCC--CCCC--------HHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEE
Confidence 5667788873 2332 346788899999999999998665421122344554
No 132
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=93.01 E-value=0.17 Score=32.07 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=28.2
Q ss_pred CCCCCceEEE--eeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 9 VPPLRFSVLC--LLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 9 ~~~~ps~vv~--L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.+..|++|+. +.|+-.+ +.+ +++++-+++||.|.+|.|++.
T Consensus 21 ~~~~ps~VL~I~V~NL~~~--vte--------~~L~~lFs~yG~V~~V~i~~~ 63 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYP--VTL--------DVLHQIFSKFGTVLKIITFTK 63 (130)
T ss_dssp ----CCSEEEEEEESCCSC--CCH--------HHHHHHHTTSSCEEEEEEEEE
T ss_pred ccCCCCceEEEEECCCCCC--CCH--------HHHHHHHhCcCCEEEEEEEcC
Confidence 4456788887 8888533 332 357778999999999999863
No 133
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.96 E-value=0.26 Score=28.16 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=27.5
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
..+++.|.+.|+ ++. .+|+++-+++||.|.+|.|++
T Consensus 12 ~~~~~~l~V~n~----~~t--------~~~l~~~F~~~G~i~~v~i~~ 47 (97)
T 1x5p_A 12 PRKGNTLYVYGE----DMT--------PTLLRGAFSPFGNIIDLSMDP 47 (97)
T ss_dssp CCCCSEEEEECS----SCC--------HHHHHHHHTTTSCEEEEEEET
T ss_pred CCCCCEEEEcCC----CCC--------HHHHHHHHhhCCCEEEEEecC
Confidence 346677888993 222 367888999999999999975
No 134
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.92 E-value=0.28 Score=27.59 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=29.6
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
+..+++.|.+.|+= .+.. .+|+++-+++||.|.++.+++
T Consensus 4 ~~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~~~~ 42 (90)
T 2dnq_A 4 GSSGMVKLFIGNLP--REAT--------EQEIRSLFEQYGKVLECDIIK 42 (90)
T ss_dssp CSSCCEEEEEESCC--SSCC--------HHHHHHHHHTSSCEEEEEEET
T ss_pred CCCCCeEEEEeCCC--CCCC--------HHHHHHHHHhCCCEEEEEEEC
Confidence 34567888899983 3333 256888899999999999984
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.87 E-value=0.14 Score=30.01 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=29.2
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
..+...|.+.|+= .+.. .+|+++-+++||.|.++.|++.
T Consensus 12 ~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 12 RRSENRVVVSGLP--PSGS--------WQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CSCCCEEEEESCC--SSCC--------HHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCEeEEEEecC
Confidence 3456677788874 3332 3578889999999999999884
No 136
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.77 E-value=0.2 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=27.9
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
++.+.|.--....+..++. --.+|+++-+++||.|.+|.|++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~---~te~~L~~~F~~~G~V~~v~i~~ 51 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGG---YSKDVLLRLLQKYGEVLNLVLSS 51 (100)
T ss_dssp SCEEEEECCCCSSCSCCCS---CCHHHHHHHHHTTSCEEEEEEES
T ss_pred cceEEEeeeccCccCcCCC---CCHHHHHHHHHhcCCEEEEEEcc
Confidence 5566666655443322111 12567889999999999999995
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.76 E-value=0.29 Score=27.98 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
..+++.|.+.|+= .++. .+|+++-+++||.|.+|.+++.
T Consensus 12 ~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~v~~~~~ 50 (99)
T 2cpj_A 12 FTQRSRLFVGNLP--PDIT--------EEEMRKLFEKYGKAGEVFIHKD 50 (99)
T ss_dssp CCCTTEEEEESCC--TTCC--------HHHHHHHTSTTCCCSEEEEETT
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHHhhcCCeEEEEEecC
Confidence 4567788899983 3333 3568889999999999999974
No 138
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.69 E-value=0.59 Score=26.55 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
..+++.|.+.|+-. ++. .+|+++-+++||.|.+|.+.+.
T Consensus 14 ~~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 14 ANPTTRLWVGGLGP--NTS--------LAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CCCCSCEEEECCCS--SCC--------HHHHHHHHHTTSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCeeEEEEeCC
Confidence 34567888898843 332 2578888999999999999874
No 139
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.65 E-value=0.21 Score=28.16 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=29.4
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
..+++.|.+.|+=. +.. .+|+++-+++||.|.++.+++.
T Consensus 6 ~~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 6 SGNTWKIFVGNVSA--ACT--------SQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp SCCSCCEEEESCCT--TCC--------HHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCC--CCC--------HHHHHHHHHcCCCEEEEEEECC
Confidence 45677788998843 332 3578888999999999999863
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.31 Score=29.34 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCCC
Q psy2203 38 CEDIKEECNKYGIVRSLEIPRPIEN 62 (74)
Q Consensus 38 ~eDv~eEC~K~G~V~~V~Iprp~~~ 62 (74)
.+|+++-+++||.|.+|.+.+...+
T Consensus 14 ~~~l~~~f~~~G~i~~v~i~~~~~~ 38 (166)
T 3md3_A 14 EDILKQYFQVGGPIANIKIMIDKNN 38 (166)
T ss_dssp HHHHHHHHGGGSCEEEEEEECCCC-
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCC
Confidence 3578888999999999999987643
No 141
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=92.56 E-value=0.081 Score=31.22 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=33.2
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCC--eEEEEecCCCCCCCCCceEEE
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGI--VRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~--V~~V~Iprp~~~~~~~gvGkV 71 (74)
.-..|.+.|+= .+.+ .+|+++.+++||. +.+|.|++.+.+..+-|.|.|
T Consensus 8 ~m~tlfV~nL~--~~~t--------ee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV 58 (95)
T 2lkz_A 8 HMDTIILRNIA--PHTV--------VDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFV 58 (95)
T ss_dssp CCCEEEEESCC--TTCC--------HHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEE
T ss_pred ccCEEEEeCCC--CcCC--------HHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEE
Confidence 34457788873 2332 3588889999995 779999987654445566655
No 142
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=92.47 E-value=0.14 Score=30.52 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=27.6
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
++-|.+.|+ +.+.. .+|+++-+++||.|.+|.|++..
T Consensus 5 ~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~v~~v~i~~d~ 41 (115)
T 4f25_A 5 SGNIFIKNL--DKSID--------NKALYDTFSAFGNILSCKVVCDE 41 (115)
T ss_dssp CCEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEEET
T ss_pred CCEEEECCC--CCCCC--------HHHHHHHHhccCCEEEEEEeecC
Confidence 445778888 33333 25788889999999999999854
No 143
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.29 E-value=0.041 Score=31.28 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=27.3
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
..+++.|.+.|+= .+.. .+|+++-+++||.|.++.+++..
T Consensus 12 ~~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~i~~~~~~~~~ 51 (95)
T 2ek1_A 12 KPGPTVIKVQNMP--FTVS--------IDEILDFFYGYQVIPGSVCLKYN 51 (95)
T ss_dssp ---CEEEEEECCC--TTCC--------HHHHHHHTTTSCBCTTCCEEEEC
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCccceEEEEeC
Confidence 4456888899983 3332 35788889999999877776643
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.24 E-value=0.17 Score=29.87 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=27.8
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHH---HHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIK---EECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~---eEC~K~G~V~~V~Iprp~~ 61 (74)
.+.+.|.+.|+= .+..++ |++ +.+++||.|.+|.|++...
T Consensus 13 ~~~~~l~V~nLp--~~~~~~--------~l~~~~~~F~~~G~i~~v~i~~~~~ 55 (111)
T 2cpi_A 13 VQKNLVFVVGLS--QRLADP--------EVLKRPEYFGKFGKIHKVVINNSTS 55 (111)
T ss_dssp CCSSCEEEEEEC--TTTCCH--------HHHHSTTTTTTTSCEEEEEEECCSS
T ss_pred cCCCEEEEECCC--CCCCHH--------HHHHHHHHhhccCCEEEEEEecCCC
Confidence 345566677763 334333 455 8899999999999988664
No 145
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.18 E-value=0.19 Score=33.74 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
.+++.|.+.|+= .... .+|+++.+++||.|.+|.|++..
T Consensus 94 ~~~~~l~v~nl~--~~~t--------~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 94 THGAALTVKNLS--PVVS--------NELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp CCSSEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEEEET
T ss_pred ccCCcccccCCC--CCCC--------HHHHHHHHHhcCCeEEEEeeeCC
Confidence 356778889883 3332 35788999999999999998864
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.01 E-value=0.54 Score=25.84 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=30.3
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
...+++.|.+.|+=.. .. .+|+++-+++||.|.++.+++.
T Consensus 8 ~~~~~~~l~V~~l~~~--~t--------~~~l~~~f~~~G~i~~~~~~~~ 47 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDT--IT--------ETDLRNHFYQFGEIRTITVVQR 47 (85)
T ss_dssp SCSSCCCEEEECCTTT--SC--------HHHHHHHHHTTSCEEEEEEEGG
T ss_pred CCCCccEEEEcCCCCC--CC--------HHHHHHHHHhCCCEeEEEEECC
Confidence 3456778888988532 22 3578888999999999999973
No 147
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.42 E-value=0.12 Score=30.28 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
.+++.|.+.|+-. +.. .+|+++-+++||.|.++.|++..
T Consensus 23 ~~~~~l~V~nlp~--~~t--------~~~l~~~F~~~G~i~~~~i~~~~ 61 (114)
T 1x5o_A 23 QDPTNLYISNLPL--SMD--------EQELENMLKPFGQVISTRILRDS 61 (114)
T ss_dssp CCTTEEEEESCCT--TCC--------HHHHHHTTTTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCEEEEEEEECC
Confidence 4556677888832 332 25688889999999999999865
No 148
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=91.36 E-value=0.71 Score=26.54 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
...+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|++
T Consensus 7 ~~~~~~~l~V~nl~~--~~t--------~~~l~~~F~~~G~i~~v~~~~ 45 (103)
T 2dgu_A 7 GMAKVKVLFVRNLAN--TVT--------EEILEKAFSQFGKLERVKKLK 45 (103)
T ss_dssp CCCCCCCEEEECCCT--TCC--------HHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCEEEEEEEC
Confidence 345678888999843 232 257888899999999999986
No 149
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=91.25 E-value=0.25 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCeEEEEecCC
Q psy2203 39 EDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 39 eDv~eEC~K~G~V~~V~Iprp 59 (74)
+|+++-+++||.|.+|.+++.
T Consensus 15 ~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 15 GELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp HHHHHHHHHHCCCSEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEEeeC
Confidence 578889999999999999985
No 150
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=91.16 E-value=0.23 Score=31.56 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=31.2
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcC--CeEEEEecCCCCCCCCCceEEE
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG--IVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G--~V~~V~Iprp~~~~~~~gvGkV 71 (74)
++.|.+.|+= .+.. .+|+++-+++|| .|.+|.|++...+...-|.|.|
T Consensus 55 ~~~lfVgnLp--~~~t--------e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV 104 (156)
T 3n9u_C 55 RAAVYVGSFS--WWTT--------DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEV 104 (156)
T ss_dssp -CEEEEECCC--TTCC--------HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEeCCC--CCCC--------HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEE
Confidence 4567788872 2332 357888899999 9999999876543233344444
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=91.12 E-value=0.33 Score=31.94 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCe--EEEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIV--RSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V--~~V~Iprp~~~~~~~gvGkV 71 (74)
.|++.|.+.|+= .+.. .+|+++-+++||.| .++.+.+.. + ...|.|.|
T Consensus 121 ~p~~~l~v~NLp--~~~t--------~~~L~~~F~~~G~v~~~~v~~~~~~-~-~~~g~gfV 170 (205)
T 3tyt_A 121 HPSNVLHFFNAP--LEVT--------EENFFEICDELGVKRPTSVKVFSGK-S-ERSSSGLL 170 (205)
T ss_dssp CCCSEEEEEEEC--TTCC--------HHHHHHHHHHHTCCCCSEEEECSCC-S-SSSEEEEE
T ss_pred CCcceEEEeCCC--CCCC--------HHHHHHHHHhcCCcceEEEEEEcCC-C-CCceEEEE
Confidence 467889999983 3333 35788899999999 899988754 2 12355554
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.11 E-value=0.43 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=28.5
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEE-EecCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSL-EIPRPI 60 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V-~Iprp~ 60 (74)
..++.|.+.|+= .+.. .+|+++-+++||.|.++ .|++..
T Consensus 13 ~~~~~l~V~nlp--~~~t--------~~~l~~~F~~~G~v~~~~~i~~~~ 52 (96)
T 2e44_A 13 QRIRKLQIRNIP--PHLQ--------WEVLDSLLVQYGVVESCEQVNTDS 52 (96)
T ss_dssp CSCCCEEEEEEC--SSSC--------HHHHHHHHHHHSCEEEEEEECCSS
T ss_pred CCCCEEEEEcCC--CCCC--------HHHHHHHHHhcCCeEEEEEeecCC
Confidence 346678888883 3333 35788889999999999 588754
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.09 E-value=0.31 Score=28.90 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=28.2
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
.++.|.+.|+- .+.. .+|+++-+++||.|.+|.|++
T Consensus 9 ~~~~l~V~nLp--~~~t--------e~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 9 SKTVILAKNLP--AGTL--------AAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEESCC--TTCC--------HHHHHHHHHTTSCEEEEECCS
T ss_pred CCCEEEEeCCC--CCCC--------HHHHHHHHHhcCCEEEEEEeC
Confidence 46788899884 2332 467899999999999999986
No 154
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=91.07 E-value=0.24 Score=29.56 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=26.2
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
....|.+.|+= .+..+ +|+++-+++||.|.++.|++.
T Consensus 15 ~~~~l~V~nLp--~~~t~--------~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLP--PSGSW--------QDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECC--SSCCT--------THHHHHHGGGSCEEEEEECTT
T ss_pred CCcEEEEeCCC--CCCCH--------HHHHHHHHhcCCeEEEEEecC
Confidence 34566788873 44433 367778999999999999874
No 155
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.06 E-value=1.3 Score=25.17 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=29.5
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhc--CCeEEEEecC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKY--GIVRSLEIPR 58 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~--G~V~~V~Ipr 58 (74)
...+++.|.+.|+=. ++. .+|+++-+++| |.|.++.+++
T Consensus 11 ~~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 11 TMSSVKILYVRNLML--STS--------EEMIEKEFNNIKPGAVERVKKIR 51 (99)
T ss_dssp CSSCCCEEEEESCCT--TCC--------HHHHHHHHHTTSTTCEEEEEECS
T ss_pred ccCCcCEEEEeCCCC--CCC--------HHHHHHHHHhcCCcceEEEEEeC
Confidence 345678899999843 332 25688889999 9999999875
No 156
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=91.06 E-value=0.42 Score=28.98 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=28.5
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
.+..+++.|.+.|. ++. .+|+++-+++||.|.+|.|++
T Consensus 34 ~~~~~~~~lfVgnl----~~t--------e~~L~~~F~~~G~I~~v~i~~ 71 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE----DMT--------PTLLRGAFSPFGNIIDLSMDP 71 (121)
T ss_dssp -CCCCCCEEEEECS----SCC--------HHHHHHHHSTTCCCSCEEEET
T ss_pred CCCCCCCEEEEcCC----CCC--------HHHHHHHHHccCCEEEEEEeC
Confidence 34456778889993 222 368889999999999999974
No 157
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=91.01 E-value=0.34 Score=31.70 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=32.8
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
++.|.+.|+=. +. -.+|+++-+++||.|.+|.|++...+ ..-|..||
T Consensus 109 ~~~l~V~nLp~--~~--------t~~~L~~~F~~~G~v~~v~i~~~~~~---~~kG~aFV 155 (193)
T 2voo_A 109 NRSVYIKGFPT--DA--------TLDDIKEWLEDKGQVLNIQMRRTLHK---AFKGSIFV 155 (193)
T ss_dssp HTEEEEECCCT--TC--------CHHHHHHHHTTSCCEEEEEEEECTTC---CEEEEEEE
T ss_pred cCEEEecCCCC--cC--------CHHHHHHHHhcCCCEEEEEEEECCCC---CcccEEEE
Confidence 46777888732 22 13788899999999999999986542 22355555
No 158
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=90.94 E-value=1.3 Score=25.66 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=27.4
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEec
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIP 57 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ip 57 (74)
..+++.|.+.|+-... +. .+|+++-+++||.|.+|.|+
T Consensus 24 ~~~~~~l~V~nl~~~~-~t--------~~~l~~~F~~~G~v~~v~i~ 61 (110)
T 1wf1_A 24 KSINSRVFIGNLNTAL-VK--------KSDVETIFSKYGRVAGCSVH 61 (110)
T ss_dssp TTCSSEEEECSCCCSS-CC--------HHHHHHHHGGGSCCSEEEEE
T ss_pred CCCCcEEEEeCCCccc-CC--------HHHHHHHHHhCCCeEEEEEe
Confidence 3455788888873320 22 36788889999999999994
No 159
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.66 E-value=0.58 Score=27.24 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=31.3
Q ss_pred CCcccCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCe----EEEEec
Q psy2203 3 PPWDRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIV----RSLEIP 57 (74)
Q Consensus 3 ~~~d~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V----~~V~Ip 57 (74)
|.++...+..+++.|.+.|+= .+.. .+|+++-+++||.| ..+.+.
T Consensus 14 ~~~~~~~~~~~~~~l~V~nLp--~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~ 62 (115)
T 2cpx_A 14 PMFSSYNPGEPNKVLYLKNLS--PRVT--------ERDLVSLFARFQEKKGPPIQFRMM 62 (115)
T ss_dssp SCCCCCCCCSCCSEEEEECCC--TTCC--------HHHHHHHTHHHHHSSSSCCEEEEE
T ss_pred ccccccCCCCCCCEEEEeCCC--CCCC--------HHHHHHHHHHhCCccceEEEEEcC
Confidence 445566666788999999973 3332 25678888999998 455544
No 160
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.51 E-value=0.72 Score=27.19 Aligned_cols=50 Identities=6% Similarity=-0.082 Sum_probs=34.4
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCe-EEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIV-RSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V-~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+= .+.. .+|+++-+++||.| .+|.|++...+ ...|.|.|
T Consensus 12 ~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~g~v~~~v~i~~d~~g-~~~G~afV 62 (114)
T 2cpy_A 12 NSAKVCAHITNIP--FSIT--------KMDVLQFLEGIPVDENAVHVLVDNNG-QGLGQALV 62 (114)
T ss_dssp CSCCCEEEEESCC--TTSC--------HHHHHHHTTTSCCCSTTEEECCCTTS-SCSSCEEE
T ss_pred CCCccEEEEeCcC--CcCC--------HHHHHHHHHhCCCcCCeEEEEECCCC-CcceEEEE
Confidence 4567788899983 2332 35688889999999 88999886632 34455544
No 161
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.41 E-value=0.95 Score=28.45 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=29.0
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcC-CeEEEEecC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG-IVRSLEIPR 58 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G-~V~~V~Ipr 58 (74)
.|++.|.+.|+-. +.. .+|+++.+++|| .|.++.+.+
T Consensus 118 ~~~~~l~v~nl~~--~~~--------~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 118 PPSATLHLSNIPP--SVS--------EEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCEEEECCCCT--TCC--------HHHHHHHHHHTTSCCCEEEESS
T ss_pred CCccEEEEeCCCC--CCC--------HHHHHHHHHHcCCCceEEEEEe
Confidence 4688899999843 222 368999999999 999999954
No 162
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.22 E-value=0.35 Score=28.16 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEE-EEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRS-LEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~-V~Iprp~~~~~~~gvGkV 71 (74)
.+.+.|.+.|+=.. .. .+|+++-+++||.|.+ |.|++...+ ...|.|.|
T Consensus 13 ~~~~~l~V~nLp~~--~t--------e~~l~~~F~~~G~v~~~v~i~~~~~g-~~~G~afV 62 (104)
T 1wg5_A 13 ANDGFVRLRGLPFG--CS--------KEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFV 62 (104)
T ss_dssp SCCCEEEEESCCTT--CC--------HHHHHHHTTTCCEEEEEEECCBCSSS-CBCSEEEE
T ss_pred CCCCEEEEeCCCCC--CC--------HHHHHHHHHhcCCcceeEEEEECCCC-CcceEEEE
Confidence 44667778887432 22 3688899999999998 888876322 33455544
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.96 E-value=0.47 Score=29.31 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=28.7
Q ss_pred CCCCceEEEeeC--CCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 10 PPLRFSVLCLLN--MVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 10 ~~~ps~vv~L~N--m~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
...||+.|.+.| +-. +.. .+|+++.+++||.|.+|.|+.
T Consensus 21 ~~~pt~~L~V~Ng~L~~--~~t--------e~~L~~~F~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGN--GVS--------RNQLLPVLEKCGLVDALLMPP 61 (114)
T ss_dssp CSSCCSEEEEETCTGGG--TCC--------HHHHHHHHHHHSCEEEEECCT
T ss_pred CCCCCCEEEEECCCCCC--CCC--------HHHHHHHHHhcCCeEEEEEeC
Confidence 346788888865 421 221 268899999999999999975
No 164
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.44 E-value=0.61 Score=27.10 Aligned_cols=38 Identities=5% Similarity=0.124 Sum_probs=28.5
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.+.+.|.+.|+=. ++. .+|+++-+++||.|.+|.|++.
T Consensus 23 ~~~~~l~V~nl~~--~~t--------~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 23 PKNCTVYCGGIAS--GLT--------DQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp SSCCEEEEECCSS--CCC--------HHHHHHHHHHHSCEEEEEEETT
T ss_pred CCCcEEEEeCCCC--CCC--------HHHHHHHHHhcCCeEEEEEeCC
Confidence 4566777888743 232 2578888999999999999985
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=88.93 E-value=1.6 Score=28.54 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
.++++|.+.|+= +.++.+ +|+++-+++||.|.+|.|++.+
T Consensus 2 ~~~~~l~V~nL~-~~~~~~--------~~L~~~F~~~G~v~~v~i~~~~ 41 (205)
T 3tyt_A 2 ADSPVLMVYGLD-QSKMNC--------DRVFNVFCLYGNVEKVKFMKSK 41 (205)
T ss_dssp CCCSEEEEECCC-TTTCCH--------HHHHHHHTTTSCEEEEEECTTS
T ss_pred CCCCEEEEeCCC-cccCCH--------HHHHHHHHhcCCeEEEEEecCC
Confidence 357788889874 223332 3688889999999999998754
No 166
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=88.88 E-value=0.41 Score=32.12 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=30.7
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcC--CeEEEEecCCCCCCCCCceEEE
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG--IVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G--~V~~V~Iprp~~~~~~~gvGkV 71 (74)
++.|.+.|+= .+.. .+||++-+++|| .|.+|.|++...+...-|.|.|
T Consensus 68 ~~~lfVgnL~--~~~t--------e~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV 117 (229)
T 3q2s_C 68 RIALYIGNLT--WWTT--------DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV 117 (229)
T ss_dssp -CEEEEESCC--TTCC--------HHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ccEEEEeCCC--CCCC--------HHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEE
Confidence 3457788873 2222 357888899999 9999999986543223344443
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=88.78 E-value=1.7 Score=28.38 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.6
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
..+++.|.+.|+=. .+.. .+|+++-+++||.|.+|.|.+..
T Consensus 31 ~~~~~~l~V~nLp~-~~~t--------e~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 31 GAGNSVLLVSNLNP-ERVT--------PQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp CCCCSEEEEESCCT-TTCC--------HHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCCCEEEEeCCCc-ccCC--------HHHHHHHHHhCCCeEEEEEEECC
Confidence 45678898999832 1222 26788889999999999999854
No 168
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=88.70 E-value=0.45 Score=31.75 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=28.9
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
+.+.|.+.|+= .+.. .+|+++-+++||.|.++.+++...
T Consensus 94 ~~~~l~v~nlp--~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 94 TDALLCVANLP--PSLT--------QQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp CSCEEEEESCC--TTCC--------HHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCEEEEcCCC--CcCC--------HHHHHHHHHhcCCeeEEEEEeeCC
Confidence 45677788873 2332 357889999999999999987654
No 169
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=88.40 E-value=0.72 Score=27.68 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=28.4
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.|..|.+.|+-..-+ + +++++=|.+||.|.++.+..+
T Consensus 6 ~~~wL~VgNL~~~~t--e--------~~L~~lF~q~G~V~~~~l~~~ 42 (89)
T 2wbr_A 6 GSSWLLLKNLTAQID--G--------PTLRTLCMQHGPLVSFHPYLN 42 (89)
T ss_dssp CCCEEEEECCCTTCC--C--------HHHHHHHHHHSCEEEEEEETT
T ss_pred ccceEEEeCCCccCC--H--------HHHHHHHHhhCCEEEEEEcCC
Confidence 466777888754322 2 688999999999999999773
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=88.13 E-value=1.3 Score=29.51 Aligned_cols=43 Identities=5% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIEN 62 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~ 62 (74)
...+++.|.+.|+=. +.. .+|+++-+++||.|.+|.|.+...+
T Consensus 37 ~~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~ 79 (292)
T 2ghp_A 37 RNRELTTVLVKNLPK--SYN--------QNKVYKYFKHCGPIIHVDVADSLKK 79 (292)
T ss_dssp -----CEEEEEEECT--TCC--------HHHHHHHHGGGSCEEEEEEEECTTS
T ss_pred cCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhcCCeEEEEEEECCCC
Confidence 346678888999743 332 3568888999999999999886543
No 171
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=88.05 E-value=0.47 Score=27.09 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=27.8
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.++.|.+.|+=. +.. .+|+++-+++||.|.++.+.+.
T Consensus 26 ~~~~l~V~nlp~--~~~--------~~~l~~~f~~~G~i~~~~~~~~ 62 (101)
T 2la4_A 26 RVTTAYIGNIPH--FAT--------EADLIPLFQNFGFILDFKHYPE 62 (101)
T ss_dssp SCCEEEEESCCT--TCC--------HHHHHHHHHTTSCCSEEEEETT
T ss_pred CCCEEEEcCCCc--ccC--------HHHHHHHHHhCCCEEEEEEecC
Confidence 356788888843 332 3678889999999999999853
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.09 E-value=0.74 Score=27.13 Aligned_cols=39 Identities=10% Similarity=0.243 Sum_probs=27.7
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
..++-|.+.|+= .+.. .+|+++-+++||.|. +.+++...
T Consensus 6 ~~~~~lfVgnLp--~~~t--------e~~L~~~F~~~G~i~-~~~~~~~~ 44 (114)
T 2dnl_A 6 SGSRKVFVGGLP--PDID--------EDEITASFRRFGPLV-VDWPHKAE 44 (114)
T ss_dssp SCCCCEEEECCC--TTCC--------HHHHHHHTTTTCCCC-EECTTSSS
T ss_pred CCCCEEEEcCCC--CCCC--------HHHHHHHHHhcCCEE-EEEeecCC
Confidence 456667788873 3332 357888899999999 77777654
No 173
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=86.84 E-value=2.8 Score=27.28 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=28.7
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcC-CeEEEEecC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG-IVRSLEIPR 58 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G-~V~~V~Ipr 58 (74)
.|++.|.+.|+-. +.. .+|+++.+++|| .|.+|.+.+
T Consensus 149 ~~~~~l~V~nlp~--~~t--------~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 149 PPSATLHLSNIPP--SVS--------EEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCSEEEEECCCT--TCC--------HHHHHHHHHTTSCCEEEEEECS
T ss_pred CCCCEEEEeCCCc--cCC--------HHHHHHHHHHcCCCeeEEEEEE
Confidence 4578899999832 332 368899999999 999999943
No 174
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=85.91 E-value=0.63 Score=30.19 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=33.3
Q ss_pred EEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 17 LCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 17 v~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
|+..|+.+.....-. ..+|++=.+.||.|.++.+..-+.+..+-|+|.|
T Consensus 5 I~VgnL~~~~~~~tt------e~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfV 53 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQ------DISIKNYFKKYGEISHFEAFNDPNSALPLHVYLI 53 (136)
T ss_dssp EEEEESSSSCCCCCC------HHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEE
T ss_pred EEEeCCCCCCCCCCC------HHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEE
Confidence 447777444433322 3578888999999999999887765445566554
No 175
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.80 E-value=4.1 Score=24.47 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 35 EDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 35 ~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.++..++.+..+.||.|..+.+...
T Consensus 26 ~~l~~~L~~~F~~~G~Vi~vr~~~d 50 (91)
T 2dnr_A 26 DALIDELLQQFASFGEVILIRFVED 50 (91)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecC
Confidence 4799999999999999999999884
No 176
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=85.53 E-value=1.7 Score=26.37 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCcccCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEE
Q psy2203 3 PPWDRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSL 54 (74)
Q Consensus 3 ~~~d~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V 54 (74)
|.+....+..+++.|.+.|+=. +.. .+|+++-+++||.|.++
T Consensus 34 ~~~~~~~~~~~~~~l~V~nLp~--~~t--------e~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 34 SVFRSYEPGEPNCRIYVKNLAK--HVQ--------EKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp GGGTTCCCCSCCSEEEEEEECT--TCC--------HHHHHHHHGGGCCTTCH
T ss_pred ccccccCCCCCCCEEEEeCCCC--CCC--------HHHHHHHHHHhCCcccc
Confidence 4556666778889999999842 232 35788889999998763
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=84.73 E-value=1 Score=29.08 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=26.9
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
++.|.+.|+-. ++. .+|+++-+++||.|.++.|++..
T Consensus 103 ~~~l~v~nl~~--~~t--------~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 103 VGNIFIKNLDK--SID--------NKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp TTEEEEESCCT--TCC--------HHHHHHHHGGGSCEEEEEEEEET
T ss_pred cccceECCccc--ccH--------HHHHHHHHhhcCCeEEEEeeccC
Confidence 44567787732 232 35788899999999999998753
No 178
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.39 E-value=3.6 Score=22.71 Aligned_cols=40 Identities=10% Similarity=-0.028 Sum_probs=29.6
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
+....+.|.+.|+= .+.. .+|+++-+++| .|.+|.|++..
T Consensus 6 ~~~~~~~l~v~nLp--~~~t--------~~~l~~~F~~~-~i~~v~i~~~~ 45 (91)
T 2dgw_A 6 SGTTCHTVKLRGAP--FNVT--------EKNVMEFLAPL-KPVAIRIVRNA 45 (91)
T ss_dssp CCCCCCEEEEECCC--SSCC--------HHHHHHHHTTS-CCSEEEEEECT
T ss_pred CCCCccEEEEECCC--CCCC--------HHHHHHHHhhC-CceEEEEEECC
Confidence 34566788899883 3332 35788889999 99999999873
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=84.08 E-value=1.6 Score=29.03 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.+++.|.+.|+= .+.. .+|+++-+++||.|.+|.+.+.
T Consensus 20 ~~~~~l~V~nLp--~~~t--------e~~l~~~F~~~G~i~~v~i~~~ 57 (261)
T 3sde_A 20 TQRCRLFVGNLP--TDIT--------EEDFKRLFERYGEPSEVFINRD 57 (261)
T ss_dssp CGGGEEEEESCC--TTCC--------HHHHHHHTGGGCCCSEEEEETT
T ss_pred CCCCEEEEECCC--CCCC--------HHHHHHHHHhcCCEEEEEEeCC
Confidence 455678899983 3332 3578888999999999999874
No 180
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=83.82 E-value=0.23 Score=29.32 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=28.2
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEE--------EEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRS--------LEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~--------V~Iprp~~ 61 (74)
.+++.|.+.|+= .+.. .+|+++-+++||.|.+ |.|++...
T Consensus 5 ~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 52 (116)
T 2lcw_A 5 SDNNTIFVQGLG--ENVT--------IESVADYFKQIGIIKTNKKTGQPMINLYTDRE 52 (116)
Confidence 456777788872 2222 3467888999999998 88887644
No 181
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=83.07 E-value=1 Score=28.28 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=31.7
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
.+.+.|.+.|+=.. .. .+||++-+++|| +++|.|++...+ .+.|.|.|
T Consensus 44 ~~~~~lfV~nLp~~--~t--------e~dL~~~F~~~G-i~~v~i~~d~~g-~srGfaFV 91 (139)
T 2hgn_A 44 TTGHCVHMRGLPYK--AT--------ENDIYNFFSPLN-PVRVHIEIGPDG-RVTGEADV 91 (139)
T ss_dssp -CCCCEECCSCCTT--CC--------HHHHHHHHCSCC-CSEEECCCSSSS-CSSCCCEE
T ss_pred CCCCEEEEeCCCCC--CC--------HHHHHHHHHhcC-CeEEEEEECCCC-CCceEEEE
Confidence 44567778886432 22 468889999999 779999986553 33455544
No 182
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=82.63 E-value=1.4 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=26.9
Q ss_pred cCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEE
Q psy2203 7 RLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSL 54 (74)
Q Consensus 7 ~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V 54 (74)
......+++.|.+.|+= .+.. .+|+++-+++||.|..+
T Consensus 9 ~~~~~~~~~~l~V~nL~--~~~t--------~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLS--FNIT--------EDELKEVFEDALEIRLV 46 (96)
T ss_dssp TTSTTTGGGEEEEESCC--SSCC--------HHHHHHHHCSEEEECCE
T ss_pred ccccCCCCCEEEEeCCC--CCCC--------HHHHHHHHhhCCcEEEe
Confidence 33445678889999983 3332 35688889999988776
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=81.26 E-value=1.7 Score=29.95 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCceEEEeeCCCCCCcCCCh-hHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 12 LRFSVLCLLNMVTPDELKDE-DEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~-~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
..++.|.+.|+-.. +.+. -......+++++..++||.|.+|.|.+
T Consensus 132 ~~~rtLfVgnL~~~--~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~ 177 (240)
T 3u1l_A 132 KKNKTLYVGGIDGA--LNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE 177 (240)
T ss_dssp CCCCEEEEECTTGG--GTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG
T ss_pred cCCceeecCCCChh--hhcccccccCcHHHHHHHHHccCCEEEEEEEC
Confidence 45677878877322 1100 012346889999999999999999986
No 184
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=80.89 E-value=0.66 Score=26.44 Aligned_cols=50 Identities=8% Similarity=-0.081 Sum_probs=30.7
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
..+++.|.+.|+= .+.. .+|+++-+++||.|.+ .+.+........|.|.|
T Consensus 14 ~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV 63 (101)
T 1fj7_A 14 STTPFNLFIGNLN--PNKS--------VAELKVAISELFAKND-LAVVDVRTGTNRKFGYV 63 (101)
T ss_dssp CSCSEEEEEECCC--TTSC--------HHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEE
T ss_pred CCCCCEEEEeCCC--CCCC--------HHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEE
Confidence 3467788899983 3332 3578888999999888 44443222233455544
No 185
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.49 E-value=3.4 Score=23.11 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=26.0
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ipr 58 (74)
..++-|.+.|+= .+.. .+|+++-+++||.|.+|...+
T Consensus 6 ~~~~~l~V~nl~--~~~t--------~~~l~~~F~~~G~v~~v~~~~ 42 (94)
T 2e5g_A 6 SGLRSVFVSGFP--RGVD--------SAQLSEYFLAFGPVASVVMDK 42 (94)
T ss_dssp TTCCEEEEECCC--TTCC--------HHHHHHHGGGTSCEEEEEECS
T ss_pred CCCCEEEEECCC--CCCC--------HHHHHHHHHhcCCeEEEEEcC
Confidence 456677788873 2332 367888999999999984433
No 186
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.90 E-value=2.5 Score=24.52 Aligned_cols=40 Identities=8% Similarity=-0.060 Sum_probs=28.5
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
...+.+.|.+.|+=. +.. .+|+++-+++||.+ +|.|++..
T Consensus 11 ~~~~~~~l~V~nLp~--~~t--------e~~l~~~F~~~G~~-~v~i~~d~ 50 (102)
T 1wez_A 11 QSTTGHCVHMRGLPY--RAT--------ENDIYNFFSPLNPM-RVHIEIGP 50 (102)
T ss_dssp CCSSSCEEEEESCCT--TCC--------HHHHHHSSCSCCCS-EEEEEESS
T ss_pred CCCCCCEEEEeCCCC--CCC--------HHHHHHHHHHcCce-EEEEEECC
Confidence 345567788898843 332 36788889999955 99998765
No 187
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=79.72 E-value=1.1 Score=25.99 Aligned_cols=49 Identities=8% Similarity=-0.059 Sum_probs=33.1
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCC---eEEEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGI---VRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~---V~~V~Iprp~~~~~~~gvGkV 71 (74)
.....|.+.|+= .+..+ +|+++-+++||. |.+|.|++...+ ...|.|.|
T Consensus 9 ~~~~~l~V~nLp--~~~te--------~~l~~~F~~~g~~~~v~~v~i~~~~~g-~~~G~afV 60 (107)
T 2lmi_A 9 DDVFLIRAQGLP--WSCTM--------EDVLNFFSDCRIRNGENGIHFLLNRDG-KRRGDALI 60 (107)
T ss_dssp SSCCEEEEECCC--SSCCS--------HHHHHHTTTSCBTTTTTTEECCCCTTS-TTCSEEEE
T ss_pred CCccEEEEeCCC--CCCCH--------HHHHHHHHhcCCcCCcceEEEEECCCC-CEeeEEEE
Confidence 456678888873 33333 467778888887 999999987653 34555554
No 188
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=79.27 E-value=1.1 Score=24.62 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHhc
Q psy2203 31 EDEYEDICEDIKEECNKY 48 (74)
Q Consensus 31 ~~~~~ei~eDv~eEC~K~ 48 (74)
++|..|+++++++|+.||
T Consensus 16 ~eW~le~LeElk~EAvrH 33 (51)
T 1ceu_A 16 NDWTLELLEELKNEAVRH 33 (51)
T ss_dssp SHHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 478899999999999875
No 189
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.17 E-value=3.1 Score=24.81 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=31.4
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEE
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkV 71 (74)
+..|.+.|+=. +.. .+||++-+++| .|.+|.|++...+ ...|.|.|
T Consensus 16 ~~~v~V~nLp~--~~t--------e~dl~~~F~~~-~v~~v~i~~d~~g-~~~G~afV 61 (109)
T 2dnn_A 16 DLYVSVHGMPF--SAM--------ENDVRDFFHGL-RVDAVHLLKDHVG-RNNGNGLV 61 (109)
T ss_dssp HHEEEEECCCS--SCC--------HHHHHHHTTTS-CCCEEEECCCTTC-CCCSEEEE
T ss_pred CCEEEEeCCCC--CCC--------HHHHHHHhccC-CeeEEEEEECCCC-CCCeEEEE
Confidence 45788888732 222 36788899999 8999999986543 23455544
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=79.15 E-value=1.8 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=28.0
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
++.|.+.|+=. .+.. .+|+++-+++||.|.+|.+.+..
T Consensus 3 ~~~l~v~nlp~-~~~~--------~~~l~~~F~~~G~i~~v~i~~~~ 40 (198)
T 1qm9_A 3 NSVLLVSNLNP-ERVT--------PQSLFILFGVYGDVQRVKILFNK 40 (198)
T ss_dssp CCEEEEECCCS-SSCC--------HHHHHHHHHTTCCCSEEECSTTC
T ss_pred CcEEEEeCCCc-ccCC--------HHHHHHHHHhcCCEEEEEEEeCC
Confidence 56777888732 1332 26788889999999999999864
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.93 E-value=1.4 Score=26.82 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=26.2
Q ss_pred CceE-EEeeCCCCCCcCCChhHHHHHHHHHHHHHHhc-CCeEEE
Q psy2203 13 RFSV-LCLLNMVTPDELKDEDEYEDICEDIKEECNKY-GIVRSL 54 (74)
Q Consensus 13 ps~v-v~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~-G~V~~V 54 (74)
|+.. |.+.|+=. ... -++|+.++++-+++| |+|++|
T Consensus 7 p~~T~lYV~NL~~--~~~----~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPA--NKD----GKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCT--TSC----HHHHHHHHHHHHHTTTCCEEEC
T ss_pred CcceEEEEeCCCC--cCC----HHHHHHHHHHHHHHcCCeeEEE
Confidence 4555 66888632 222 356999999999999 599999
No 192
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.90 E-value=4.7 Score=22.64 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEec
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIP 57 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ip 57 (74)
..++.|.+.|+ +.+.. .+|+++-+++||.|. +.+.
T Consensus 17 ~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~G~v~-~~~~ 51 (97)
T 2e5j_A 17 PLAADVYVGNL--PRDAR--------VSDLKRALRELGSVP-LRLT 51 (97)
T ss_dssp CCCCEEEEECC--CTTCC--------HHHHHHHHHHTTCCC-SEEE
T ss_pred CCCCEEEEeCC--CCcCc--------HHHHHHHHHhcCCEE-EEEE
Confidence 34677888998 33333 357888899999996 4444
No 193
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.84 E-value=1.5 Score=24.46 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=25.5
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCC-eEEEEec
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGI-VRSLEIP 57 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~-V~~V~Ip 57 (74)
..+++.|.+.|+= .+.. .+|+++-+++||. |..+.+.
T Consensus 5 ~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~G~vv~~~~~~ 42 (93)
T 2cqh_A 5 SSGMNKLYIGNLS--PAVT--------ADDLRQLFGDRKLPLAGQVLL 42 (93)
T ss_dssp CCCCCCEEEECCC--TTCC--------HHHHHHHHHHTTCCCSSCEEE
T ss_pred CCCCcEEEEeCCC--CCCC--------HHHHHHHHHHcCCceEEEEEc
Confidence 4556777788883 3332 3578888999999 6766663
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.20 E-value=1.6 Score=26.70 Aligned_cols=49 Identities=6% Similarity=-0.019 Sum_probs=32.4
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCe----EEEEecCCCCCCCCCceEEEEe
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIV----RSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V----~~V~Iprp~~~~~~~gvGkVFv 73 (74)
..+..|.+.|+= .+.. .+||++-+++||.| .+|.|++...+. .-|..||
T Consensus 21 ~~~~~v~V~nLp--~~~t--------e~dl~~~F~~~g~v~g~v~~v~i~~d~~gr---~~G~aFV 73 (123)
T 2dha_A 21 ENQVIVRMRGLP--FTAT--------AEEVVAFFGQHCPITGGKEGILFVTYPDGR---PTGDAFV 73 (123)
T ss_dssp CSCCEEEECSCC--TTCC--------HHHHHHHHHTTSCCTTGGGGEEEEECTTSC---EEEEEEE
T ss_pred CCCCEEEEeCCC--CCCC--------HHHHHHHHHhhCCccCCcceEEEEECCCCC---EeeEEEE
Confidence 456788888873 3332 36899999999975 688888753321 2455555
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=77.66 E-value=9.3 Score=23.07 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEE
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSL 54 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V 54 (74)
...+++.|.+.|+=. +.. .+|+++.+++||.|..+
T Consensus 95 ~~~~~~~l~v~nlp~--~~t--------~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 95 KVRAARTLLAKNLSF--NIT--------EDELKEVFEDALEIRLV 129 (175)
T ss_dssp TTGGGGEEEEESCCS--SCC--------HHHHHHHCTTCSEEEEE
T ss_pred ccccCCEEEEeCCCC--CCC--------HHHHHHHHHhcCeEEEe
Confidence 345678888999842 232 26788999999999877
No 196
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=77.65 E-value=2.5 Score=25.42 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=25.3
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcC-CeEEEEecC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYG-IVRSLEIPR 58 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G-~V~~V~Ipr 58 (74)
..-|.+.|+= .+.. .+|+++-+++|| .|..+.|+.
T Consensus 28 ~~~l~VgnLp--~~~t--------e~dL~~~F~~~G~~v~~v~i~~ 63 (111)
T 2jvr_A 28 RYRITMKNLP--EGCS--------WQDLKDLARENSLETTFSSVNT 63 (111)
T ss_dssp CEEEEEECSS--CCCC--------HHHHHHHHHHHTCCCSEEECSS
T ss_pred CCEEEEECCC--CCCC--------HHHHHHHHHHhCCeeEEEEEEc
Confidence 4456678873 2232 357888899999 999999974
No 197
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=77.33 E-value=0.84 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.039 Sum_probs=29.4
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCC---eEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGI---VRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~---V~~V~Iprp~~ 61 (74)
...+.|.+.|+=.. .. .+|+++-+++||. |.+|.|++...
T Consensus 15 ~~~~~l~V~nLp~~--~t--------e~~l~~~F~~~G~~~~v~~v~i~~~~~ 57 (118)
T 2db1_A 15 GEGYVVKLRGLPWS--CS--------IEDVQNFLSDCTIHDGVAGVHFIYTRE 57 (118)
T ss_dssp CCCCEEEEESCCTT--CC--------HHHHHHHTTTSCBTTGGGGEEEEECSS
T ss_pred CCCcEEEEeCCCCC--CC--------HHHHHHHHHHcCCccCceeEEEEECCC
Confidence 44677888887432 22 3678889999999 89999987654
No 198
>1esx_A VPR protein; helix, amphipatic, turn, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1m8l_A 1vpc_A 1x9v_A
Probab=76.70 E-value=1.9 Score=26.46 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHhc
Q psy2203 31 EDEYEDICEDIKEECNKY 48 (74)
Q Consensus 31 ~~~~~ei~eDv~eEC~K~ 48 (74)
++|..|+.+|+++|+.||
T Consensus 16 ~eW~le~LeELk~EAvrH 33 (96)
T 1esx_A 16 NDWTLELLEELKNEAVRH 33 (96)
T ss_dssp THHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 578899999999999886
No 199
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.32 E-value=2.9 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 35 EDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 35 ~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
.++..++.+..+.||.|..+.+....
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 57999999999999999999988743
No 200
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=75.08 E-value=0.99 Score=28.17 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=29.2
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCC---eEEEEecCCCC
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGI---VRSLEIPRPIE 61 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~---V~~V~Iprp~~ 61 (74)
...+.|.+.|+=.. .+ .+|+++-+++||. |.+|.|++...
T Consensus 42 ~~~~~lfVgnLp~~--~t--------e~dL~~~F~~~G~v~~v~~v~i~~d~~ 84 (136)
T 2hgl_A 42 GEGFVVKLRGLPWS--CS--------VEDVQNFLSDCTIHDGAAGVHFIYTRE 84 (136)
T ss_dssp CTTCEEEEESCCTT--CC--------HHHHHHHTTTCCCSSSSTTEEEEECSS
T ss_pred CCCCEEEEeCCCCC--CC--------HHHHHHHHHHhCCcCceeEEEEEECCC
Confidence 34567788886432 21 3678899999999 89999987654
No 201
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=74.77 E-value=8 Score=20.85 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=28.6
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhc----C-------CeEEEEecCC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKY----G-------IVRSLEIPRP 59 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~----G-------~V~~V~Iprp 59 (74)
..+++.|.+.|+=. +.. .+|+++-+++| | .|.++.+++.
T Consensus 3 ~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 3 LGSARRLYVGNIPF--GIT--------EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp SGGGGEEEEESCCT--TCC--------HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCCEEEEeCCCC--CCC--------HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 35677888898743 222 25777888888 8 9999999875
No 202
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.67 E-value=1.4 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=25.9
Q ss_pred CCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEE-EEecC
Q psy2203 11 PLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRS-LEIPR 58 (74)
Q Consensus 11 ~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~-V~Ipr 58 (74)
..+.+.|.+.|+= .+.. .+|+++-+++||.|.+ +.+..
T Consensus 22 ~~~~~~l~V~nLp--~~~t--------e~~l~~~F~~~G~v~~~~~~~~ 60 (124)
T 1wel_A 22 HEAGFCVYLKGLP--FEAE--------NKHVIDFFKKLDIVEDSIYIAY 60 (124)
T ss_dssp CCCCCEEEEECCC--TTCC--------HHHHHHHSCSSCBCTTTCEEEE
T ss_pred CCCCcEEEEeCCC--CCCC--------HHHHHHHHHhcCCccceEEEEE
Confidence 3456788899883 2222 3578888999999987 44443
No 203
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.58 E-value=9 Score=21.43 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=25.0
Q ss_pred CCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 10 PPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 10 ~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
...+++.|.+.|+=. ++. .+|+++-+++||.| .+++.
T Consensus 11 ~~~~~~~l~V~nLp~--~~t--------~~~l~~~F~~~g~v---~~~~~ 47 (101)
T 2fc9_A 11 WSGESKTLVLSNLSY--SAT--------EETLQEVFEKATFI---KVPQN 47 (101)
T ss_dssp CSCCCSEEEEESCCT--TCC--------HHHHHHHCSSCSEE---ECCBC
T ss_pred CCCCCCEEEEeCCCC--CCC--------HHHHHHHHHhCCEE---EEEEC
Confidence 345678898999843 232 25677888899987 45554
No 204
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=73.16 E-value=13 Score=22.68 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=32.1
Q ss_pred CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeE--EEEecCCCCCCCCCceEEE
Q psy2203 12 LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVR--SLEIPRPIENVDVPGCGKA 71 (74)
Q Consensus 12 ~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~--~V~Iprp~~~~~~~gvGkV 71 (74)
..++.|.+.|+=.. .. .+||++-+++| .|+ +|.|++...+ .+.|.|.|
T Consensus 40 ~~~~~lfVgnLp~~--~t--------e~dL~~~F~~~-~i~~~~v~i~~d~~G-rsrGfaFV 89 (126)
T 2hgm_A 40 ANDGFVRLRGLPFG--CT--------KEEIVQFFSGL-EIVPNGITLPVDPEG-KITGEAFV 89 (126)
T ss_dssp SSCCEEEEECCCTT--CC--------HHHHHHHTTTS-CEEEEEEECCCCSSS-SSCSEEEE
T ss_pred CCCCEEEEeCCCCC--CC--------HHHHHHHHhcC-CceeeEEEEEECCCC-CCceEEEE
Confidence 34667888987432 22 36788999999 566 9999986653 33455544
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.21 E-value=2.3 Score=26.58 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=31.2
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
+...+..+|.+.|+-... . -.+|+++.+++||.|..|.+.+-.
T Consensus 13 ~~~~~G~il~v~~l~~~~-~--------sredLke~F~~~G~V~~Vd~~~g~ 55 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQ-T--------CREDLHILFSNHGEIKWIDFVRGA 55 (121)
T ss_dssp CSCCCCCEEEEEESCCSS-C--------CHHHHHHHTCSSCCEEEEECCTTC
T ss_pred ccccCCeEEEEecCCCCc-C--------CHHHHHHHHHhcCCEEEEEEecCC
Confidence 344566778888764431 1 157899999999999999987743
No 206
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.90 E-value=24 Score=19.49 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=22.7
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
....+++.|.+.|+= .+.. .+|+++-+++|+ ++.+++.
T Consensus 10 ~~~~~~~~l~V~nLp--~~~t--------~~~l~~~F~~~~---~~~~~~~ 47 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLS--EDTT--------EETLKESFDGSV---RARIVTD 47 (102)
T ss_dssp SSSCCCSSEEEECCC--TTCC--------HHHHHHTSTTCS---EEEEEEC
T ss_pred CCCCCCCEEEEeCCC--CccC--------HHHHHHHhcCCe---EEEEEec
Confidence 344667888899883 2332 245666777775 4555543
No 207
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=45.47 E-value=16 Score=16.97 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHH
Q psy2203 31 EDEYEDICEDIKEE 44 (74)
Q Consensus 31 ~~~~~ei~eDv~eE 44 (74)
+++|++..+.+|+-
T Consensus 2 eeeyqemlenlrea 15 (26)
T 2dpr_A 2 EEEYQEMLENLREA 15 (26)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 57899999999874
No 208
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=44.20 E-value=21 Score=18.91 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHh
Q psy2203 33 EYEDICEDIKEECNK 47 (74)
Q Consensus 33 ~~~ei~eDv~eEC~K 47 (74)
+-+||.++||.|..|
T Consensus 12 ~KqEIL~E~RkElqK 26 (45)
T 1use_A 12 VKQELLEEVKKELQK 26 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777777777655
No 209
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=40.53 E-value=13 Score=20.38 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=24.9
Q ss_pred CceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEec
Q psy2203 13 RFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIP 57 (74)
Q Consensus 13 ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Ip 57 (74)
+++-|.+.|+= .+.. .+|+++-+++| .|.++.|+
T Consensus 4 ~~~~l~V~nLp--~~~t--------~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 4 GSSGILVKNLP--QDSN--------CQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCCEEEESCC--SSCC--------HHHHHHHTCSS-CCCCEEEE
T ss_pred CCCEEEEeCCC--CCCC--------HHHHHHHHhhC-CeEEEEEe
Confidence 45667788873 3332 35788889999 99999997
No 210
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=37.63 E-value=22 Score=20.50 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEec
Q psy2203 35 EDICEDIKEECNKYG-IVRSLEIP 57 (74)
Q Consensus 35 ~ei~eDv~eEC~K~G-~V~~V~Ip 57 (74)
.++++.+.++.++|| .|.++.|-
T Consensus 83 ~~i~~~l~~~~~~~Gi~v~~v~I~ 106 (113)
T 2rpb_A 83 ARLREELDKITDRWGVKITRVEIQ 106 (113)
T ss_dssp HHHHHHHHHHHGGGTEECCCEEEC
T ss_pred HHHHHHHHHHHHhcCeEEEEEEEE
Confidence 578888888899999 56666653
No 211
>2ewh_A Major carboxysome shell protein 1A; bacterial microcompartment domain; 1.40A {Halothiobacillus neapolitanus} SCOP: d.58.56.1 PDB: 2g13_A 3h8y_A
Probab=37.07 E-value=66 Score=19.14 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhcCC--eEEEEecCCCCC
Q psy2203 33 EYEDICEDIKEECNKYGI--VRSLEIPRPIEN 62 (74)
Q Consensus 33 ~~~ei~eDv~eEC~K~G~--V~~V~Iprp~~~ 62 (74)
.-+.-.+..++.+++.|. |.+..||||+++
T Consensus 56 aV~aAv~ag~~~~~~~g~~lvs~~VIprP~~~ 87 (98)
T 2ewh_A 56 AVNAAVRAGADACERVGDGLVAAHIIARVHSE 87 (98)
T ss_dssp HHHHHHHHHHHHHTTSTTCEEEEEEESSCCHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEeCCCCHH
Confidence 345556666667777765 777789999864
No 212
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=36.62 E-value=43 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=20.2
Q ss_pred CCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 25 PDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 25 ~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
|+.+ +.++.+++.+-+.+.|++||.
T Consensus 99 p~~~-~~~~l~~i~~Gi~~~~~~~g~ 123 (334)
T 2rb9_A 99 EEGL-PMETLKAVVTSMAETARTAGI 123 (334)
T ss_dssp ETTC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 5444 356789999999999999984
No 213
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=36.36 E-value=22 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 22 MVTPDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 22 m~~~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
.+.+.+ .++++.+++.+-+.+.|++||.
T Consensus 77 ~l~~~~-~~~~~l~~i~~Gi~~~~~~~g~ 104 (334)
T 2v9y_A 77 YFSCGK-LDLSVTEAVVAGIAKACGKAGC 104 (334)
T ss_dssp EEEESS-CCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCC-CCHHHHHHHHHHHHHHHHHhCC
Confidence 333444 4667889999999999999974
No 214
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=35.92 E-value=76 Score=21.00 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=28.7
Q ss_pred ceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCC
Q psy2203 14 FSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRP 59 (74)
Q Consensus 14 s~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp 59 (74)
.++.++.|++++.. .....++.+.+++-|++||.+....||+.
T Consensus 179 ~~~~vV~N~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~Ip~~ 221 (286)
T 2xj4_A 179 MDWVVLRNRLATTE---ARNRKRLEDRLNALAKRVGFRIGPGLRDR 221 (286)
T ss_dssp CEEEEEEECCTTCC---GGGHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_pred ccEEEEEeeecCCC---cchhHHHHHHHHHHHHHcCCccCCCCCch
Confidence 35667889998754 12245677778888888997555556653
No 215
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=35.15 E-value=23 Score=24.75 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=19.0
Q ss_pred CChhHHHHHHHHHHHHHHhcCC
Q psy2203 29 KDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 29 ~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
.+.++.+++.+-+++.|++||.
T Consensus 114 ~~~~~l~~~~~Gi~~~~~~~gv 135 (345)
T 2zod_A 114 LDIEIFREVIRGALDKLREAKT 135 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHhccC
Confidence 4467789999999999999984
No 216
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=34.93 E-value=24 Score=24.65 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.4
Q ss_pred CCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 25 PDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 25 ~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
...+ ++++..++.+-+.+.|.+||.
T Consensus 110 ~~~~-~~~~l~~i~~Gi~~~~~~~g~ 134 (348)
T 2z01_A 110 CGKA-VPEKIAAIVKGVADGCVEAGC 134 (348)
T ss_dssp ESSC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 3344 677899999999999999973
No 217
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=34.64 E-value=52 Score=19.45 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 30 ~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
+++..+.+.+-|++-|.. |. +|-|++||
T Consensus 66 ~de~v~~vv~~I~~~~~t-g~---------------~GdGkiFV 93 (116)
T 1vfj_A 66 SEPFVKPTVEAILKAART-GE---------------VGDGKIFV 93 (116)
T ss_dssp CGGGHHHHHHHHHHHHCC-SS---------------TTCCEEEE
T ss_pred cHHHHHHHHHHHHHHhcC-CC---------------CCCEEEEE
Confidence 455667788888888743 43 56778887
No 218
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=34.62 E-value=33 Score=21.97 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=25.7
Q ss_pred CCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeE
Q psy2203 9 VPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVR 52 (74)
Q Consensus 9 ~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~ 52 (74)
......++-++..- +..+...+..|.++..-++++|+++|--.
T Consensus 4 ~~~~~~~Igvi~~~-~~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 46 (292)
T 3k4h_A 4 ANQTTKTLGLVMPS-SASKAFQNPFFPEVIRGISSFAHVEGYAL 46 (292)
T ss_dssp ---CCCEEEEECSS-CHHHHTTSTHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCCEEEEEecC-CccccccCHHHHHHHHHHHHHHHHcCCEE
Confidence 33444444444332 22222456688999999999999999533
No 219
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=33.95 E-value=46 Score=20.10 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEe
Q psy2203 35 EDICEDIKEECNKYG-IVRSLEI 56 (74)
Q Consensus 35 ~ei~eDv~eEC~K~G-~V~~V~I 56 (74)
.++++.+.+...+|| .|.+|.|
T Consensus 92 ~~i~~~l~~~~~~~GI~V~~V~i 114 (133)
T 4fvg_A 92 HHMQSTLDDATDDWGIKVERVEI 114 (133)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEEE
Confidence 567888888889999 5666665
No 220
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=32.39 E-value=28 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 21 NMVTPDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 21 Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
+.+.+.+ .+.++.+++.+-|.+.|+++|.
T Consensus 111 ~~l~~~~-~~~~~l~~i~~Gi~~~~~~~g~ 139 (349)
T 3p4e_A 111 DYYATGK-LDVDTAAEVISGIADGCLQAGC 139 (349)
T ss_dssp EEEEESS-CCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhcCCC-CCHHHHHHHHHHHHHHHHHcCC
Confidence 3444555 4667899999999999999984
No 221
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=32.33 E-value=32 Score=24.30 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=22.8
Q ss_pred CCCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 21 NMVTPDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 21 Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
+.+.+.. .+.++.+++.+-+.+.|+++|.
T Consensus 110 ~~l~~~~-~~~~~l~~i~~Gi~~~~~~~g~ 138 (350)
T 3m84_A 110 DYVAHDK-LDPAIMEELVKGMSKACAECGV 138 (350)
T ss_dssp EEEEESS-CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCC-CCHHHHHHHHHHHHHHHHHhCC
Confidence 4444555 4677899999999999999984
No 222
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=32.29 E-value=32 Score=23.75 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHHHHHhcCC
Q psy2203 29 KDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 29 ~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
.+.++.+++.+-+.+.|++||.
T Consensus 92 ~~~~~l~~i~~Gi~~~~~~~g~ 113 (319)
T 3mcq_A 92 ADEDWISKFAAGFFACAAQFDI 113 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC
Confidence 5667899999999999999984
No 223
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=31.64 E-value=69 Score=20.16 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCCCcccCCCC--CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCC
Q psy2203 1 MYPPWDRLVPP--LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPI 60 (74)
Q Consensus 1 ~~~~~d~~~~~--~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~ 60 (74)
|||.|..--.. ...|++.|.=|=+..++..+-. =-.+|+.+.|.|-|....+.|.-.+
T Consensus 54 ~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~~fvAn~t--V~~edL~~~c~~~~g~~e~WvdLeP 113 (126)
T 1yrk_A 54 MYPEWKSTFDAHIYEGRVIQIVLMRAAEEPVSEVT--VGVSVLAERCKKNNGKAEFWLDLQP 113 (126)
T ss_dssp BCCCTTCEEEEECCTTCEEEEEEEEETTEEEEEEE--EEHHHHHHHHHTTTTEEEEEEECBS
T ss_pred CCcCccceEEeeeeCCEEEEEEEEcCCCCeeeEEE--EEHHHHHhhhccCCCceEEEEeccc
Confidence 57777554332 3455665554423333222211 1256777899998889999998865
No 224
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.80 E-value=52 Score=18.92 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.8
Q ss_pred CCChhHHHHHHHHHHHHHHhcCC
Q psy2203 28 LKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 28 l~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
-.||.+.++...||.+-+.|-|.
T Consensus 35 stddkeieeferdmedlakktgv 57 (83)
T 2ln3_A 35 STDDKEIEEFERDMEDLAKKTGV 57 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHhHHHHHHHhhch
Confidence 45788899999999999999884
No 225
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=29.91 E-value=68 Score=18.77 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 30 ~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
+|+.-+++.+-|++-|.. | .+|-|++||
T Consensus 66 ~d~~v~~vv~~I~~~~~t-g---------------~~GdGkiFV 93 (112)
T 2eg2_A 66 RDEDVEKVVETIVKTAQT-G---------------RVGDGKIFI 93 (112)
T ss_dssp CGGGHHHHHHHHHHHHCC-S---------------STTCCEEEE
T ss_pred cHHHHHHHHHHHHHHhcC-C---------------CCCCEEEEE
Confidence 455667788888888743 3 256788887
No 226
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=29.44 E-value=34 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=21.3
Q ss_pred CCCCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 23 VTPDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 23 ~~~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
+....+ ++++..++.+-+.+.|.+||.
T Consensus 106 l~~~~~-~~~~l~~i~~Gi~~~~~~~g~ 132 (346)
T 2btu_A 106 IACGKA-EPSKIENIVKGISEGCRQAGC 132 (346)
T ss_dssp EEESSC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHHhCC
Confidence 334444 667889999999999999984
No 227
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=29.34 E-value=90 Score=18.54 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHhc--C-CeEEEEecCCCCC
Q psy2203 32 DEYEDICEDIKEECNKY--G-IVRSLEIPRPIEN 62 (74)
Q Consensus 32 ~~~~ei~eDv~eEC~K~--G-~V~~V~Iprp~~~ 62 (74)
..-+.-.+..++.+++. | -|.+..||||+++
T Consensus 51 saV~~Av~ag~~~~~~~~gg~lvs~~VIprP~~~ 84 (99)
T 3cim_A 51 SEVQASVSAGIEAANRVNGGEVLSTHIIARPHEN 84 (99)
T ss_dssp HHHHHHHHHHHHHHHTSTTCEEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeCCCCHH
Confidence 34455566666677786 6 4567779999865
No 228
>4axj_A EUTM, ethanolamine carboxysome structural protein; bacterial microcompartment; 1.62A {Clostridium difficile}
Probab=28.85 E-value=1e+02 Score=18.69 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcCCeEE-EEecCCCCC
Q psy2203 33 EYEDICEDIKEECNKYGIVRS-LEIPRPIEN 62 (74)
Q Consensus 33 ~~~ei~eDv~eEC~K~G~V~~-V~Iprp~~~ 62 (74)
.-+.-.+..++.+++.|.+.+ .+||||+++
T Consensus 55 aV~aAv~ag~~aa~~~g~lvs~~VIprP~~~ 85 (104)
T 4axj_A 55 AVKAATDAGAAAAERVGELISVHVIPRPHFE 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHSEEEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCCHH
Confidence 345555666667778887665 569999975
No 229
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=28.65 E-value=40 Score=20.06 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEeC
Q psy2203 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATLV 74 (74)
Q Consensus 30 ~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv~ 74 (74)
+|+.-+++.+-|++-|.. | .+|-|+|||.
T Consensus 70 ~de~v~~vv~~I~~~~~t-g---------------~~GdGkiFV~ 98 (116)
T 2ns1_B 70 ADDQLDEVIDIVSKAAYT-G---------------KIGDGKIFVA 98 (116)
T ss_dssp EGGGHHHHHHHHHHHHCC-S---------------STTCCEEEEE
T ss_pred cHHHHHHHHHHHHHHhcC-C---------------CCCCEEEEEE
Confidence 455567788888887754 4 2678888873
No 230
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=28.65 E-value=63 Score=18.90 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEeC
Q psy2203 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATLV 74 (74)
Q Consensus 30 ~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv~ 74 (74)
+|+.-+++.+-|++-|.. | .+|-|+|||.
T Consensus 66 ~d~~v~~vv~~I~~~~~t-g---------------~~GdGkiFV~ 94 (112)
T 1hwu_A 66 DDKVVEQAVDAIIKAART-G---------------KIGDGKIFVQ 94 (112)
T ss_dssp CGGGHHHHHHHHHHHHCC-S---------------STTCCEEEEE
T ss_pred cHHHHHHHHHHHHHHhcC-C---------------CCCCEEEEEE
Confidence 455567788888887743 4 2677888873
No 231
>3mpy_A Ethanolamine utilization protein EUTM; bacterial microcompartment, shell protein, ethanolamine AMMO lyase, carboxysome, membrane protein; 2.00A {Escherichia coli} PDB: 3mpw_G 3i6p_A
Probab=28.59 E-value=70 Score=19.36 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEE-EEecCCCCC
Q psy2203 33 EYEDICEDIKEECNKYGIVRS-LEIPRPIEN 62 (74)
Q Consensus 33 ~~~ei~eDv~eEC~K~G~V~~-V~Iprp~~~ 62 (74)
.-+.-.+..++.+++.|.+.+ .+||||+++
T Consensus 51 aV~aAv~ag~~aa~~~g~lvs~~VIprP~~~ 81 (103)
T 3mpy_A 51 ACKAATDAGAAAAQRIGELVSVHVIPRPHGD 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEESSCCTH
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCCHH
Confidence 345555566666777777665 559999864
No 232
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=28.34 E-value=72 Score=20.40 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCCCcccCCCC--CCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Q psy2203 1 MYPPWDRLVPP--LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIE 61 (74)
Q Consensus 1 ~~~~~d~~~~~--~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~ 61 (74)
|||.|..--.. ...|+|.|.=|=+..++..+-.. -.+|+.+.|.|-+....+.|.-.++
T Consensus 59 ~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~~fVAn~tV--~~edL~~~ck~~~g~~e~WvdLeP~ 119 (138)
T 2enj_A 59 MYPPWDSTFDAHINKGRVMQIIVKGKNVDLISETTV--ELYSLAERCRKNNGKTEIWLELKPQ 119 (138)
T ss_dssp ECCCSSSEEEECCCSSCEEEEEEECSSCSCCEEEEE--ESHHHHHHHHHTTTCEEEEEECBSS
T ss_pred CCccccceEeeeEECCeEEEEEEEcCCCCeeeEEEE--EHHHHHhhhccCCCceEEEEecccC
Confidence 57888654333 45666666655444444333211 2456778999988899999988653
No 233
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=28.21 E-value=28 Score=24.57 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=19.1
Q ss_pred CChhHHHHHHHHHHHHHHhcCC
Q psy2203 29 KDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 29 ~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
.+.++.+++.+.+.+.|++||.
T Consensus 114 ~~~~~l~~i~~Gi~~~~~~~gv 135 (345)
T 2yyd_A 114 LDIEIFREVIRGALDKLREAKT 135 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC
Confidence 4567889999999999999984
No 234
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=27.76 E-value=80 Score=19.59 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=28.0
Q ss_pred EeeCCCCCCcCC---------ChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCC
Q psy2203 18 CLLNMVTPDELK---------DEDEYEDICEDIKEECNKYGIVRSLEIPRPIEN 62 (74)
Q Consensus 18 ~L~Nm~~~~el~---------~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~ 62 (74)
.+.|++++.... +.+..+.-..++.+.+.++|. +|.+|+.+.|
T Consensus 78 ~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~--sIa~P~Ig~G 129 (158)
T 2fg1_A 78 YVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA--SVHMPRIGCG 129 (158)
T ss_dssp EEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC--EEEECCTTCS
T ss_pred EEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC--eEEecCcCCC
Confidence 345666665332 122345566677788888884 9999998765
No 235
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=27.37 E-value=35 Score=21.31 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCC
Q psy2203 36 DICEDIKEECNKYGI 50 (74)
Q Consensus 36 ei~eDv~eEC~K~G~ 50 (74)
++..|+++-|..||.
T Consensus 4 k~iKdLKka~t~YG~ 18 (116)
T 4ard_A 4 AVIKELKTAASQYGA 18 (116)
T ss_pred HHHHHHHHHHHHhCC
Confidence 578899999999995
No 236
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=26.11 E-value=50 Score=19.60 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=25.7
Q ss_pred eEEEeeCCCCCCcCCChhHH--HHHHHHHHHHHHhc
Q psy2203 15 SVLCLLNMVTPDELKDEDEY--EDICEDIKEECNKY 48 (74)
Q Consensus 15 ~vv~L~Nm~~~~el~~~~~~--~ei~eDv~eEC~K~ 48 (74)
...++.-+++|+...++.++ .+|+.+|++.-.||
T Consensus 50 slF~~AD~Y~pd~~r~~yElde~~Lr~ev~~~L~k~ 85 (87)
T 1v74_B 50 ELFMAAERFEPDADRANYEIDDNGLKVEVRSILEKF 85 (87)
T ss_dssp HHHHHHHTBCCSTTCCTTCBCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCccccccccChHHHHHHHHHHHHHh
Confidence 33455668888888777665 68999999988887
No 237
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=24.98 E-value=49 Score=22.52 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=22.4
Q ss_pred eCCCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 20 LNMVTPDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 20 ~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
.++..|+.+ +.++..++.+-+.+.|.+||.
T Consensus 88 ~~~~~p~~~-~~~~l~~~~~Gi~~~~~~~g~ 117 (311)
T 2yxz_A 88 LGLFLPEDL-EEGFVLELVRGAAEAAKRLGA 117 (311)
T ss_dssp EEEEECTTC-BHHHHHHHHHHHHHHHHHTTC
T ss_pred eeEeCCCCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 334445544 457789999999999999984
No 238
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=23.85 E-value=93 Score=18.49 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 30 ~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
+++.-+.+.+-|++-|.. | .+|-|++||
T Consensus 68 ~de~v~~vv~~I~~~~~t-g---------------~~GdGkiFV 95 (119)
T 2j9c_A 68 KEEDVDNVIDIICENART-G---------------NPGDGKIFV 95 (119)
T ss_dssp EGGGHHHHHHHHHHHHCC-S---------------STTCEEEEE
T ss_pred cHHHHHHHHHHHHHHhcC-C---------------CCCCEEEEE
Confidence 455567788888887743 4 256788887
No 239
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=22.57 E-value=49 Score=23.28 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCCCCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 22 MVTPDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 22 m~~~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
+.-++.+ +.++.+++.+-|++.|++||.
T Consensus 122 l~~p~~~-~~~~l~~i~~Gi~~~~~~~gv 149 (342)
T 3c9u_A 122 LNLPEDL-EVSYVERFYIGVKRACEFYKC 149 (342)
T ss_dssp EEECTTS-BHHHHHHHHHHHHHHHHHHTC
T ss_pred EecCCCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 3334333 467789999999999999984
No 240
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=22.52 E-value=73 Score=18.73 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCceEEEEe
Q psy2203 30 DEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATL 73 (74)
Q Consensus 30 ~~~~~~ei~eDv~eEC~K~G~V~~V~Iprp~~~~~~~gvGkVFv 73 (74)
+++.-+.+.+-|++-|.. | .+|-|+|||
T Consensus 68 ~d~~v~~vv~~I~~~~~t-g---------------~~GdGkiFV 95 (114)
T 2gw8_A 68 ADDAVERAIDVIVEVARS-G---------------KIGDGKIFV 95 (114)
T ss_dssp EGGGHHHHHHHHHHHHCC-S---------------STTCCEEEE
T ss_pred cHHHHHHHHHHHHHHhCC-C---------------CCCCEEEEE
Confidence 355567788888887743 4 256788887
No 241
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.48 E-value=1.6e+02 Score=18.74 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCe
Q psy2203 31 EDEYEDICEDIKEECNKYGIV 51 (74)
Q Consensus 31 ~~~~~ei~eDv~eEC~K~G~V 51 (74)
+..|.++..-++++|.++|--
T Consensus 22 ~~~~~~~~~gi~~~a~~~g~~ 42 (277)
T 3hs3_A 22 NRFYAQIIDGIQEVIQKEGYT 42 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCE
T ss_pred ChhHHHHHHHHHHHHHHCCCC
Confidence 568899999999999999964
No 242
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=22.19 E-value=61 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=20.1
Q ss_pred CCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 25 PDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 25 ~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
|+.+ +.++.+++.+-+.+.|++||.
T Consensus 99 p~~~-~~~~l~~i~~Gi~~~~~~~g~ 123 (343)
T 2z1u_A 99 EEGL-DMDILERVVASMGKAAREAGV 123 (343)
T ss_dssp ETTC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHhCC
Confidence 4443 456889999999999999984
No 243
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha helical protein, heteronuclear spectroscopy; NMR {Human t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1 a.73.1.1
Probab=21.60 E-value=44 Score=22.40 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCC
Q psy2203 38 CEDIKEECNKYGI 50 (74)
Q Consensus 38 ~eDv~eEC~K~G~ 50 (74)
..||+++|++||.
T Consensus 5 lk~ik~aV~~~G~ 17 (199)
T 1qrj_B 5 LQAIKQEVSQAAP 17 (199)
T ss_dssp HHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhCC
Confidence 4689999999994
No 244
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=21.03 E-value=1.4e+02 Score=20.51 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCcccCCCCCCceEEEeeCCCCCCcCCChhHHHHHHHHHHHHHHhcCCeEEEEe
Q psy2203 3 PPWDRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEI 56 (74)
Q Consensus 3 ~~~d~~~~~~ps~vv~L~Nm~~~~el~~~~~~~ei~eDv~eEC~K~G~V~~V~I 56 (74)
||=-+++.....++-++.+ .++..|.++..-++++|.++|-=..+..
T Consensus 15 ~~~~~~~~~~s~~Igvv~~-------~~~~f~~~l~~gi~~~a~~~g~~~~i~~ 61 (412)
T 4fe7_A 15 VPRGSHMFTKRHRITLLFN-------ANKAYDRQVVEGVGEYLQASQSEWDIFI 61 (412)
T ss_dssp ------CCCCCEEEEEECC-------TTSHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCcCCCCCceEEEEeC-------CcchhhHHHHHHHHHHHHhcCCCeEEEe
Confidence 3334455555445544443 3567889999999999999996554444
No 245
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=21.02 E-value=86 Score=21.39 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=20.1
Q ss_pred CCcCCChhHHHHHHHHHHHHHHhcCC
Q psy2203 25 PDELKDEDEYEDICEDIKEECNKYGI 50 (74)
Q Consensus 25 ~~el~~~~~~~ei~eDv~eEC~K~G~ 50 (74)
|+.+ +.++.+++.+-+.+.|++||.
T Consensus 78 p~~~-~~~~l~~i~~Gi~~~~~~~g~ 102 (314)
T 3vti_C 78 EEGF-PVEDLKKIVKSMAEAAKEAGV 102 (314)
T ss_dssp ETTC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 4443 457789999999999999984
No 246
>3qkb_A Uncharacterized protein; beta/alpha-propeller, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.73A {Pediococcus pentosaceus}
Probab=20.57 E-value=1.5e+02 Score=18.31 Aligned_cols=38 Identities=8% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCCCCcCCChh----HHHHHHHHHHHHHHhcC--CeEEEEecCC
Q psy2203 22 MVTPDELKDED----EYEDICEDIKEECNKYG--IVRSLEIPRP 59 (74)
Q Consensus 22 m~~~~el~~~~----~~~ei~eDv~eEC~K~G--~V~~V~Iprp 59 (74)
|++.+++..=+ .+++.++.+.+++++.| .|..|.+.-.
T Consensus 44 ~l~s~eidey~~~~ear~eA~~rM~e~A~~lGANAVIgvrfdts 87 (111)
T 3qkb_A 44 MLASEDIDKYNMFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTE 87 (111)
T ss_dssp ECCGGGTTCGGGHHHHHHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhh
Confidence 34455544322 35667777888889998 6888877653
Done!