RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2203
         (74 letters)



>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 58.8 bits (142), Expect = 5e-14
 Identities = 36/57 (63%), Positives = 51/57 (89%)

Query: 16 VLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKAT 72
          VLCL+NMV P+EL D++EYE+I ED+++EC+KYG+V+S+EIPRP++ V+VPGCGK  
Sbjct: 6  VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIF 62


>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 99

 Score = 43.0 bits (101), Expect = 9e-08
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 16 VLCLLNMVTPDELKDEDE-YEDICEDIKEECNKYGIVRSLEIPRP 59
          V+ + NM  P + +D+     +I ED++ EC+K+G +R L +   
Sbjct: 10 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR 54


>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 350

 Score = 24.2 bits (52), Expect = 1.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 28  LKDEDEYEDICEDIKE 43
            K ED++ D C+ +K+
Sbjct: 319 CKTEDDFNDWCQQVKK 334


>d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
          Pyrococcus furiosus [TaxId: 2261]}
          Length = 454

 Score = 24.0 bits (52), Expect = 2.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 35 EDICEDIKEECNKYGIVRSLEIPRPIENV 63
          +D+ E I +   +  I  S E+P  I  V
Sbjct: 41 KDLEERIIKAGKEEVIKYSEELPDKINTV 69


>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 334

 Score = 23.8 bits (51), Expect = 2.6
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 10/41 (24%)

Query: 4   PWDRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEE 44
               L P +     C          K+E ++++ C  +++E
Sbjct: 285 NILNLDPSVALGFFC----------KEEKDFDNWCSLVQKE 315


>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
          [TaxId: 4754]}
          Length = 295

 Score = 23.5 bits (50), Expect = 2.7
 Identities = 3/16 (18%), Positives = 8/16 (50%)

Query: 29 KDEDEYEDICEDIKEE 44
           +E +Y ++ + I   
Sbjct: 2  AEEQQYLNLVQYIINH 17


>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein
          MscS (YggB), C-terminal domain {Escherichia coli
          [TaxId: 562]}
          Length = 101

 Score = 23.1 bits (49), Expect = 3.6
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 34 YEDICEDIKEECNKYGIVRSLEIPRPIENVDV 65
          Y D+ E IK E +  GI      P P  +V+ 
Sbjct: 71 YWDVLERIKREFDAAGI----SFPYPQMDVNF 98


>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Achromobacter xylosoxidans
           [TaxId: 85698]}
          Length = 162

 Score = 23.4 bits (50), Expect = 3.7
 Identities = 4/37 (10%), Positives = 11/37 (29%)

Query: 12  LRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKY 48
           +R   + +  +      K     E++   +K      
Sbjct: 82  IRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGE 118


>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 80

 Score = 22.6 bits (48), Expect = 4.2
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 39 EDIKEECNKYGIVRSLEIPRPIENVDVPGC 68
            + E+ +  G + S+ + R +      G 
Sbjct: 15 AMLYEKFSPAGPILSIRVCRDMITRRSLGY 44


>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia
          coli [TaxId: 562]}
          Length = 87

 Score = 22.5 bits (48), Expect = 4.3
 Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 2/33 (6%)

Query: 15 SVLCLLNMVTPDELKDEDEYEDICEDIKEECNK 47
           +        PD  +   E +D    +K E   
Sbjct: 50 ELFMAAERFEPDADRANYEIDD--NGLKVEVRS 80


>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
          toxin zeta subunit {Streptococcus pyogenes [TaxId:
          1314]}
          Length = 273

 Score = 23.0 bits (48), Expect = 4.4
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 21 NMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCGKATLV 74
          N+V   + + E+   D  E++ +        +++E P        PG GK +L 
Sbjct: 2  NIVNFTDKQFENRLNDNLEELIQG------KKAVESPTAFLLGGQPGSGKTSLR 49


>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA
           synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
          Length = 384

 Score = 22.8 bits (47), Expect = 6.4
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 27  ELKDEDEYEDICEDIKE 43
            L  E E     E I +
Sbjct: 363 LLAGEPELHATAEIIAD 379


>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
          [TaxId: 1423]}
          Length = 278

 Score = 22.8 bits (48), Expect = 6.5
 Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 4/39 (10%)

Query: 31 EDEYEDICEDIKEECNKYGIVRSLEIPRPIENVDVPGCG 69
          + +Y  I +DI       GI       R   + D     
Sbjct: 4  DKQYNSIIKDIINN----GISDEEFDVRTKWDSDGTPAH 38


>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 169

 Score = 22.7 bits (47), Expect = 6.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 27 ELKDEDEYEDICEDIKEECNKY 48
          +LKD D+   I ED+K   N +
Sbjct: 16 DLKDVDKILLISEDLKNIGNTF 37


>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
           {Escherichia coli [TaxId: 562]}
          Length = 467

 Score = 22.6 bits (47), Expect = 6.6
 Identities = 8/55 (14%), Positives = 13/55 (23%)

Query: 4   PWDRLVPPLRFSVLCLLNMVTPDELKDEDEYEDICEDIKEECNKYGIVRSLEIPR 58
             D            LL +  P     +   + I E  K        ++ L    
Sbjct: 398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTY 452


>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 22.0 bits (47), Expect = 7.3
 Identities = 4/20 (20%), Positives = 13/20 (65%)

Query: 35 EDICEDIKEECNKYGIVRSL 54
           +I + +++E  + GI +++
Sbjct: 4  SEIYQWVRDELKRAGISQAV 23


>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 22.1 bits (47), Expect = 8.1
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 35 EDICEDIKEECNKYGI 50
           +I   +KE+  K+ I
Sbjct: 12 AEIAFQVKEQLLKHNI 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,840
Number of extensions: 14216
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 25
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)