BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2204
(231 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242019185|ref|XP_002430045.1| Splicing factor U2AF 50 kDa subunit, putative [Pediculus humanus
corporis]
gi|212515110|gb|EEB17307.1| Splicing factor U2AF 50 kDa subunit, putative [Pediculus humanus
corporis]
Length = 445
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/256 (74%), Positives = 197/256 (76%), Gaps = 48/256 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPANV VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 98 AAGQIPANV------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 151
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 152 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 211
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+++N +V VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 212 PMPGMSENPSVNVPAGVISTVVPDSPHKIFIGGLPNYLNEDQLKELLMSFGQLRAFNLVM 271
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKN-ASGQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN A GQQAPVQI
Sbjct: 272 DSTTGLSKGYAFCLFVDINVTDQAIAGLNGMQLGDKKLIVQRASVGAKNTALGQQAPVQI 331
Query: 210 QVPGLTQVGQAGPATE 225
QVPGLT VG +GP TE
Sbjct: 332 QVPGLTSVGMSGPPTE 347
>gi|347968827|ref|XP_311994.4| AGAP002908-PA [Anopheles gambiae str. PEST]
gi|333467820|gb|EAA08228.4| AGAP002908-PA [Anopheles gambiae str. PEST]
Length = 446
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/259 (71%), Positives = 195/259 (75%), Gaps = 51/259 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 96 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 149
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFD INFKGQSLKIRRPHDYQ
Sbjct: 150 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQ 209
Query: 132 PTPGVTDNAAVAVP---AGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD+AAV VP +GVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 210 PMPGMTDSAAVNVPEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFN 269
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ-QAP 206
DQAIAGLNGMQLGDKKLIVQRASVGAKN++ AP
Sbjct: 270 LVKDAATGLGKGYAFAEYVEYTVTDQAIAGLNGMQLGDKKLIVQRASVGAKNSNAAVVAP 329
Query: 207 VQIQVPGLTQVGQAGPATE 225
VQIQVPGL+ VG +GP TE
Sbjct: 330 VQIQVPGLSLVGSSGPPTE 348
>gi|332375140|gb|AEE62711.1| unknown [Dendroctonus ponderosae]
Length = 374
Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 183/255 (71%), Positives = 195/255 (76%), Gaps = 49/255 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTEDEMME+FNQQM
Sbjct: 89 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEYFNQQM 142
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 143 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 202
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+++N +++VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 203 PMPGMSEN-SISVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 261
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
DQAIAGLNGMQLGDK+LIVQRASVGAKNA+ A VQIQ
Sbjct: 262 DTAFGLSKGYAFAEYIDISMTDQAIAGLNGMQLGDKRLIVQRASVGAKNATVLPA-VQIQ 320
Query: 211 VPGLTQVGQAGPATE 225
VPGL+ VG +GP TE
Sbjct: 321 VPGLSLVGASGPPTE 335
>gi|157132061|ref|XP_001662443.1| splicing factor u2af large subunit [Aedes aegypti]
gi|108881728|gb|EAT45953.1| AAEL002818-PA [Aedes aegypti]
Length = 418
Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 184/259 (71%), Positives = 192/259 (74%), Gaps = 51/259 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 68 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 121
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 122 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 181
Query: 132 PTPGVTDNAAVAVP---AGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD+AAV+VP +GVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 182 PMPGMTDSAAVSVPEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFN 241
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVG-AKNASGQQAP 206
DQAIAGLNGMQLGDKKLIVQRASVG AP
Sbjct: 242 LVKDAATGLSKGYAFAEYVEYTITDQAIAGLNGMQLGDKKLIVQRASVGAKNANVAAVAP 301
Query: 207 VQIQVPGLTQVGQAGPATE 225
VQIQVPGL+ VG +GP TE
Sbjct: 302 VQIQVPGLSLVGSSGPPTE 320
>gi|270011684|gb|EFA08132.1| hypothetical protein TcasGA2_TC005736 [Tribolium castaneum]
Length = 432
Score = 338 bits (868), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 182/255 (71%), Positives = 194/255 (76%), Gaps = 49/255 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 88 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 141
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 142 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 201
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+ + ++++VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 202 PMPGMAE-SSISVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 260
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
DQAIAGLNGMQLGDK+LIVQRASVGAKNA+ A VQIQ
Sbjct: 261 DTAFGLSKGYAFAEYIDITMTDQAIAGLNGMQLGDKRLIVQRASVGAKNATVIPA-VQIQ 319
Query: 211 VPGLTQVGQAGPATE 225
VPGL+ VG +GP TE
Sbjct: 320 VPGLSLVGASGPPTE 334
>gi|91088649|ref|XP_974465.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor 2 [Tribolium castaneum]
Length = 450
Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 182/255 (71%), Positives = 194/255 (76%), Gaps = 49/255 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 106 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 159
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 160 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 219
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+ + ++++VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 220 PMPGMAE-SSISVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 278
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
DQAIAGLNGMQLGDK+LIVQRASVGAKNA+ A VQIQ
Sbjct: 279 DTAFGLSKGYAFAEYIDITMTDQAIAGLNGMQLGDKRLIVQRASVGAKNATVIPA-VQIQ 337
Query: 211 VPGLTQVGQAGPATE 225
VPGL+ VG +GP TE
Sbjct: 338 VPGLSLVGASGPPTE 352
>gi|307176032|gb|EFN65791.1| Splicing factor U2AF 50 kDa subunit [Camponotus floridanus]
Length = 432
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 182/256 (71%), Positives = 189/256 (73%), Gaps = 53/256 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 90 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 143
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 144 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 203
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN ++ VP VPDSPHKIFIGGLPNYLNE
Sbjct: 204 PMPGMTDNPSMNVPG-----TVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 258
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 259 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 318
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 319 QVPGLSMVGTSGPATE 334
>gi|383854116|ref|XP_003702568.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Megachile
rotundata]
Length = 432
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 182/256 (71%), Positives = 189/256 (73%), Gaps = 53/256 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 90 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 143
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 144 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 203
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN ++ VP VPDSPHKIFIGGLPNYLNE
Sbjct: 204 PMPGMTDNPSMNVPG-----TVPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 258
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 259 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 318
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 319 QVPGLSMVGTSGPATE 334
>gi|340715832|ref|XP_003396412.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Bombus
terrestris]
gi|350417884|ref|XP_003491627.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 1
[Bombus impatiens]
Length = 432
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 182/256 (71%), Positives = 189/256 (73%), Gaps = 53/256 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 90 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 143
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 144 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 203
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN ++ VP VPDSPHKIFIGGLPNYLNE
Sbjct: 204 PMPGMTDNPSMNVPG-----TVPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 258
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 259 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 318
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 319 QVPGLSMVGTSGPATE 334
>gi|66520699|ref|XP_623055.1| PREDICTED: splicing factor U2AF 50 kDa subunit [Apis mellifera]
Length = 432
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/256 (70%), Positives = 188/256 (73%), Gaps = 53/256 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 90 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 143
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFD INFKGQSLKIRRPHDYQ
Sbjct: 144 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQ 203
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN ++ VP VPDSPHKIFIGGLPNYLNE
Sbjct: 204 PMPGMTDNPSMNVPG-----TVPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 258
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 259 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 318
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 319 QVPGLSMVGTSGPATE 334
>gi|114052735|ref|NP_001040494.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 [Bombyx mori]
gi|95103122|gb|ABF51502.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 1
[Bombyx mori]
Length = 417
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/258 (71%), Positives = 191/258 (74%), Gaps = 52/258 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+E MEFFNQQM
Sbjct: 70 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM 123
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 124 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 183
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG T+N A+ VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 184 PMPG-TENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 242
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS---GQQAPV 207
DQAIAGLNGMQLGDKKLIVQRAS+GAKN++ APV
Sbjct: 243 DSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGAKNSTLALTGAAPV 302
Query: 208 QIQVPGLTQVGQAGPATE 225
QIQV GLT G AGP TE
Sbjct: 303 QIQVAGLTLAG-AGPPTE 319
>gi|357623461|gb|EHJ74600.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 [Danaus
plexippus]
Length = 350
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/258 (70%), Positives = 191/258 (74%), Gaps = 52/258 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+E MEFFNQQM
Sbjct: 3 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM 56
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 57 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 116
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG T+N A+ VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 117 PMPG-TENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 175
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ---APV 207
DQAIAGLNGMQLGDKKLIVQRAS+GAKN++ APV
Sbjct: 176 DSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGAKNSTLAMTGAAPV 235
Query: 208 QIQVPGLTQVGQAGPATE 225
+QV GLT G AGPATE
Sbjct: 236 TLQVAGLTLAG-AGPATE 252
>gi|307195151|gb|EFN77144.1| Splicing factor U2AF 50 kDa subunit [Harpegnathos saltator]
Length = 402
Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 180/256 (70%), Positives = 187/256 (73%), Gaps = 57/256 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 118 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN ++ VPDSPHKIFIGGLPNYLNE
Sbjct: 178 PMPGMTDNPSMN---------VPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 228
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 229 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGTQAPVQI 288
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 289 QVPGLSMVGSSGPATE 304
>gi|322792032|gb|EFZ16137.1| hypothetical protein SINV_12499 [Solenopsis invicta]
Length = 344
Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 181/256 (70%), Positives = 186/256 (72%), Gaps = 57/256 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 6 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 59
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 60 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 119
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN S VPDSPHKIFIGGLPNYLNE
Sbjct: 120 PMPGMTDNP---------SMNVPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 170
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 171 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 230
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 231 QVPGLSMVGTSGPATE 246
>gi|332026432|gb|EGI66560.1| Splicing factor U2AF 50 kDa subunit [Acromyrmex echinatior]
Length = 435
Score = 332 bits (850), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 181/256 (70%), Positives = 186/256 (72%), Gaps = 57/256 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 97 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 150
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 151 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 210
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN S VPDSPHKIFIGGLPNYLNE
Sbjct: 211 PMPGMTDNP---------SMNVPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 261
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 262 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 321
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 322 QVPGLSMVGTSGPATE 337
>gi|350417886|ref|XP_003491628.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 2
[Bombus impatiens]
Length = 428
Score = 332 bits (850), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 181/256 (70%), Positives = 186/256 (72%), Gaps = 57/256 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 90 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 143
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 144 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 203
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN S VPDSPHKIFIGGLPNYLNE
Sbjct: 204 PMPGMTDNP---------SMNVPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 254
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 255 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 314
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 315 QVPGLSMVGTSGPATE 330
>gi|170054347|ref|XP_001863087.1| splicing factor u2af large subunit [Culex quinquefasciatus]
gi|167874693|gb|EDS38076.1| splicing factor u2af large subunit [Culex quinquefasciatus]
Length = 438
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/259 (69%), Positives = 188/259 (72%), Gaps = 51/259 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 88 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 141
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 142 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 201
Query: 132 PTPGVTDNAAVAVP---AGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD+A V +GVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 202 PMPGMTDSAVAPVQEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFN 261
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVG-AKNASGQQAP 206
DQAIAGLNGMQLGDKKLIVQRASVG AP
Sbjct: 262 LVKDAATGLSKGYAFAEYVEYSITDQAIAGLNGMQLGDKKLIVQRASVGAKNANVAAVAP 321
Query: 207 VQIQVPGLTQVGQAGPATE 225
VQIQVPGL+ VG +GP TE
Sbjct: 322 VQIQVPGLSLVGSSGPPTE 340
>gi|389610875|dbj|BAM19048.1| U2 small nuclear riboprotein auxiliary factor 50 [Papilio polytes]
Length = 422
Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/263 (69%), Positives = 191/263 (72%), Gaps = 57/263 (21%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+E MEFFNQQM
Sbjct: 70 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM 123
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 124 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 183
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG T+N A+ VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 184 PMPG-TENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 242
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS--------G 202
DQAIAGLNGMQLGDKKLIVQRAS+GAKN++
Sbjct: 243 DSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGAKNSTLGVYIQSMT 302
Query: 203 QQAPVQIQVPGLTQVGQAGPATE 225
APV +QV GLT G AGPATE
Sbjct: 303 GAAPVTLQVAGLTLAG-AGPATE 324
>gi|380016747|ref|XP_003692335.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Apis florea]
Length = 428
Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 180/256 (70%), Positives = 185/256 (72%), Gaps = 57/256 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 90 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 143
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFD INFKGQSLKIRRPHDYQ
Sbjct: 144 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQ 203
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN S VPDSPHKIFIGGLPNYLNE
Sbjct: 204 PMPGMTDNP---------SMNVPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 254
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQI 209
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPVQI
Sbjct: 255 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMIGAQAPVQI 314
Query: 210 QVPGLTQVGQAGPATE 225
QVPGL+ VG +GPATE
Sbjct: 315 QVPGLSMVGTSGPATE 330
>gi|289741197|gb|ADD19346.1| splicing factor U2AF large subunit [Glossina morsitans morsitans]
Length = 423
Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 181/260 (69%), Positives = 188/260 (72%), Gaps = 52/260 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN + PE AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM
Sbjct: 72 AAGQIPANAL-PEI-----PQAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 125
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL+GLAQAAGNPVLACQINLDKNFAFLEFRS DETTQAMAFDGI+FKGQSLKIRRPHDYQ
Sbjct: 126 HLTGLAQAAGNPVLACQINLDKNFAFLEFRSTDETTQAMAFDGISFKGQSLKIRRPHDYQ 185
Query: 132 PTPGVTDNAAVAVPA--GVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
P PGV ++ VA P GVIS VVPDSPHKIFIGGLPNYLNE
Sbjct: 186 PMPGVVESTPVAQPVANGVISAVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLRAFNL 245
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ---A 205
DQAIAGLNGMQLGDKKLIVQRASVGAKNA A
Sbjct: 246 VKDAATGLSKGYAFCEYIDHSITDQAIAGLNGMQLGDKKLIVQRASVGAKNAQNNHTTAA 305
Query: 206 PVQIQVPGLTQVGQAGPATE 225
PV IQVPGL+ VG +GP TE
Sbjct: 306 PVMIQVPGLSMVGISGPPTE 325
>gi|345480698|ref|XP_001604333.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Nasonia
vitripennis]
Length = 455
Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 179/258 (69%), Positives = 186/258 (72%), Gaps = 59/258 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 115 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 168
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 169 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 228
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG+TDN ++ VPDSPHKIFIGGLPNYLNE
Sbjct: 229 PMPGMTDNPSMN---------VPDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVK 279
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS---GQQAPV 207
DQAIAGLNGMQLGDKKLIVQRASVGAKN G QAPV
Sbjct: 280 DSATGLSKGYAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGAKNPMPMIGAQAPV 339
Query: 208 QIQVPGLTQVGQAGPATE 225
QIQVPGL+ VG +GP TE
Sbjct: 340 QIQVPGLSMVGTSGPPTE 357
>gi|195167317|ref|XP_002024480.1| GL15893 [Drosophila persimilis]
gi|198469588|ref|XP_001355063.2| GA22177 [Drosophila pseudoobscura pseudoobscura]
gi|194107878|gb|EDW29921.1| GL15893 [Drosophila persimilis]
gi|198146942|gb|EAL32119.2| GA22177 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 66 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 119
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 120 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 179
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 180 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 239
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NAS
Sbjct: 240 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNASNSS 299
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 300 QSVMLQVPGLSTVVSSGPPTE 320
>gi|194770152|ref|XP_001967161.1| GF19596 [Drosophila ananassae]
gi|190619281|gb|EDV34805.1| GF19596 [Drosophila ananassae]
Length = 416
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 178 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 237
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NAS
Sbjct: 238 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNASNTT 297
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 298 QSVMLQVPGLSTVVTSGPPTE 318
>gi|386764550|ref|NP_001245709.1| U2 small nuclear riboprotein auxiliary factor 50, isoform C
[Drosophila melanogaster]
gi|383293439|gb|AFH07422.1| U2 small nuclear riboprotein auxiliary factor 50, isoform C
[Drosophila melanogaster]
Length = 360
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 8 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 61
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 62 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 121
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 122 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 181
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+
Sbjct: 182 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT 241
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 242 QSVMLQVPGLSNVVTSGPPTE 262
>gi|386764548|ref|NP_001245708.1| U2 small nuclear riboprotein auxiliary factor 50, isoform B
[Drosophila melanogaster]
gi|383293438|gb|AFH07421.1| U2 small nuclear riboprotein auxiliary factor 50, isoform B
[Drosophila melanogaster]
Length = 427
Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 75 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 128
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 129 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 188
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 189 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 248
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+
Sbjct: 249 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT 308
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 309 QSVMLQVPGLSNVVTSGPPTE 329
>gi|17136764|ref|NP_476891.1| U2 small nuclear riboprotein auxiliary factor 50, isoform A
[Drosophila melanogaster]
gi|386764552|ref|NP_001245710.1| U2 small nuclear riboprotein auxiliary factor 50, isoform D
[Drosophila melanogaster]
gi|195351420|ref|XP_002042232.1| GM13406 [Drosophila sechellia]
gi|195479195|ref|XP_002100800.1| GE15975 [Drosophila yakuba]
gi|195555160|ref|XP_002077042.1| GD24494 [Drosophila simulans]
gi|4033485|sp|Q24562.1|U2AF2_DROME RecName: Full=Splicing factor U2AF 50 kDa subunit; AltName: Full=U2
auxiliary factor 50 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor large subunit
gi|349761|gb|AAA03548.1| RNA binding protein [Drosophila melanogaster]
gi|7293214|gb|AAF48596.1| U2 small nuclear riboprotein auxiliary factor 50, isoform A
[Drosophila melanogaster]
gi|17861976|gb|AAL39465.1| LD03714p [Drosophila melanogaster]
gi|194124075|gb|EDW46118.1| GM13406 [Drosophila sechellia]
gi|194188324|gb|EDX01908.1| GE15975 [Drosophila yakuba]
gi|194203060|gb|EDX16636.1| GD24494 [Drosophila simulans]
gi|220943258|gb|ACL84172.1| U2af50-PA [synthetic construct]
gi|220953438|gb|ACL89262.1| U2af50-PA [synthetic construct]
gi|383293440|gb|AFH07423.1| U2 small nuclear riboprotein auxiliary factor 50, isoform D
[Drosophila melanogaster]
Length = 416
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 178 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 237
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+
Sbjct: 238 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT 297
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 298 QSVMLQVPGLSNVVTSGPPTE 318
>gi|194893848|ref|XP_001977952.1| GG19328 [Drosophila erecta]
gi|190649601|gb|EDV46879.1| GG19328 [Drosophila erecta]
Length = 416
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 178 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 237
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+
Sbjct: 238 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT 297
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 298 QSVMLQVPGLSNVVTSGPPTE 318
>gi|195448282|ref|XP_002071589.1| GK10063 [Drosophila willistoni]
gi|194167674|gb|EDW82575.1| GK10063 [Drosophila willistoni]
Length = 416
Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 178 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 237
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+
Sbjct: 238 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT 297
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 298 QSVMLQVPGLSTVVTSGPPTE 318
>gi|195042782|ref|XP_001991497.1| GH12033 [Drosophila grimshawi]
gi|195134983|ref|XP_002011915.1| GI14308 [Drosophila mojavensis]
gi|193901255|gb|EDW00122.1| GH12033 [Drosophila grimshawi]
gi|193909169|gb|EDW08036.1| GI14308 [Drosophila mojavensis]
Length = 416
Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 187/261 (71%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQ LKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQDLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD AV V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 178 PMPGITDTPAVKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDEQVKELLLSFGKLRAFN 237
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+
Sbjct: 238 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTS 297
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 298 QSVMLQVPGLSTVVTSGPPTE 318
>gi|95103124|gb|ABF51503.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 2
[Bombyx mori]
Length = 306
Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/231 (72%), Positives = 175/231 (75%), Gaps = 48/231 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+E MEFFNQQM
Sbjct: 70 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM 123
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 124 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 183
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG T+N A+ VPAGVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 184 PMPG-TENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 242
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
DQAIAGLNGMQLGDKKLIVQRAS+GAKN++
Sbjct: 243 DSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGAKNST 293
>gi|193629757|ref|XP_001950852.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Acyrthosiphon
pisum]
Length = 446
Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/268 (65%), Positives = 186/268 (69%), Gaps = 60/268 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN + P+T AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM
Sbjct: 87 AAGQIPANTM-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 140
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 141 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 200
Query: 132 PTPGVTD-NAAVAVPAGVISTV------------VPDSPHKIFIGGLPNYLNE------- 171
PTPG+T+ N +G+ + VPDSPHKIFIGGLP YLN+
Sbjct: 201 PTPGMTESNPVTNYNSGMTLDMMKYDSSSFGLGTVPDSPHKIFIGGLPAYLNDEQVKELL 260
Query: 172 ----------------------------------DQAIAGLNGMQLGDKKLIVQRASVGA 197
DQAIAGLNGMQLG+KKLIVQRAS+GA
Sbjct: 261 TSFGQLKAFNLVKDAATGLSKGYAFCEYADVVMTDQAIAGLNGMQLGEKKLIVQRASIGA 320
Query: 198 KNASGQQAPVQIQVPGLTQVGQAGPATE 225
KN QAPV IQVPGLT VG AGP TE
Sbjct: 321 KNPGLGQAPVTIQVPGLTVVGTAGPPTE 348
>gi|328721668|ref|XP_003247369.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 2
[Acyrthosiphon pisum]
Length = 451
Score = 315 bits (807), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/268 (65%), Positives = 185/268 (69%), Gaps = 60/268 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN + P+T AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM
Sbjct: 92 AAGQIPANTM-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 145
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 146 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 205
Query: 132 PTPGVTD-NAAVAVPAGVISTV------------VPDSPHKIFIGGLPNYLNE------- 171
PTPG+T+ N +G+ + VPDSPHKIFIGGLP YLN+
Sbjct: 206 PTPGMTESNPVTNYNSGMTLDMMKYDSSSFGLGTVPDSPHKIFIGGLPAYLNDEQVKELL 265
Query: 172 ----------------------------------DQAIAGLNGMQLGDKKLIVQRASVGA 197
DQAIAGLNGMQLG+KKLIVQRAS+GA
Sbjct: 266 TSFGQLKAFNLVKDAATGLSKGYAFCEYADVVMTDQAIAGLNGMQLGEKKLIVQRASIGA 325
Query: 198 KNASGQQAPVQIQVPGLTQVGQAGPATE 225
KN Q PV IQVPGLT VG AGP TE
Sbjct: 326 KNPGLGQVPVTIQVPGLTVVGTAGPPTE 353
>gi|328721670|ref|XP_001951521.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 1
[Acyrthosiphon pisum]
Length = 416
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/256 (67%), Positives = 184/256 (71%), Gaps = 50/256 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN + P+T AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM
Sbjct: 71 AAGQIPANTM-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 124
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 125 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 184
Query: 132 PTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------- 171
PTPG+T+ N +G+ T+ +SPHKIFIGGLP YLN+
Sbjct: 185 PTPGMTESNPVTNYNSGM--TLDMNSPHKIFIGGLPAYLNDEQVKELLTSFGQLKAFNLV 242
Query: 172 ----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQI 209
DQAIAGLNGMQLG+KKLIVQRAS+GAKN Q PV I
Sbjct: 243 KDAATGLSKGYAFCEYADVVMTDQAIAGLNGMQLGEKKLIVQRASIGAKNPGLGQVPVTI 302
Query: 210 QVPGLTQVGQAGPATE 225
QVPGLT VG AGP TE
Sbjct: 303 QVPGLTVVGTAGPPTE 318
>gi|170053756|ref|XP_001862821.1| splicing factor U2AF 50 kDa subunit [Culex quinquefasciatus]
gi|167874130|gb|EDS37513.1| splicing factor U2AF 50 kDa subunit [Culex quinquefasciatus]
Length = 382
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 171/245 (69%), Positives = 177/245 (72%), Gaps = 51/245 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 102 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 155
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ
Sbjct: 156 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 215
Query: 132 PTPGVTDNAAVAVP---AGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD+A V +GVISTVVPDSPHKIFIGGLPNYLNE
Sbjct: 216 PMPGMTDSAVAPVQEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFN 275
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVG-AKNASGQQAP 206
DQAIAGLNGMQLGDKKLIVQRASVG AP
Sbjct: 276 LVKDAATGLSKGYAFAEYVEYSITDQAIAGLNGMQLGDKKLIVQRASVGAKNANVAAVAP 335
Query: 207 VQIQV 211
VQIQ+
Sbjct: 336 VQIQI 340
>gi|427789501|gb|JAA60202.1| Putative splicing factor u2af large subunit rrm superfamily
[Rhipicephalus pulchellus]
Length = 462
Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/234 (68%), Positives = 172/234 (73%), Gaps = 42/234 (17%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
AAVP+VG TITRQARRLYVGNIPFG +E+EMM++FN QMH G +QA GNPVLACQINLD
Sbjct: 132 AAVPIVGGTITRQARRLYVGNIPFGCSEEEMMDYFNAQMHACGFSQAPGNPVLACQINLD 191
Query: 93 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP PG+++ +VAVP GVISTV
Sbjct: 192 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGMSETPSVAVP-GVISTV 250
Query: 153 VPDSPHKIFIGGLPNYLNE----------------------------------------- 171
V DSPHKIFIGGLPNYLNE
Sbjct: 251 VQDSPHKIFIGGLPNYLNEDQVRELLMSFGQLRAFNLVKDSATGLSKGYAFCEYVEVATT 310
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
DQAI GLNGMQLGDKKLIVQRASVGAKN+ QAPVQIQVPGL G AGP TE
Sbjct: 311 DQAIMGLNGMQLGDKKLIVQRASVGAKNSQMNQAPVQIQVPGLQLQGGAGPPTE 364
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 23 PETTVAAAAAAAVPVVGSTITRQA-RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG 81
P ++ + AVP V ST+ + + ++++G +P + ED++ E M L A
Sbjct: 231 PMPGMSETPSVAVPGVISTVVQDSPHKIFIGGLPNYLNEDQVRELL---MSFGQL--RAF 285
Query: 82 NPVLACQINLDKNFAFLEFRSIDETTQA-MAFDGINFKGQSLKIRR 126
N V L K +AF E+ + T QA M +G+ + L ++R
Sbjct: 286 NLVKDSATGLSKGYAFCEYVEVATTDQAIMGLNGMQLGDKKLIVQR 331
>gi|391337926|ref|XP_003743315.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Metaseiulus
occidentalis]
Length = 430
Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 178/257 (69%), Gaps = 47/257 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA ++ P T + PV+GSTITRQARRLYVGNIPFG TE EM+++FN QM
Sbjct: 80 ASGQIPATLLAPPITTNHQPSQ--PVIGSTITRQARRLYVGNIPFGCTEQEMIDYFNVQM 137
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
H AQA GNPVLACQIN+DKNFAFLEFRSIDET+ AM+FDGINFKGQSLKIRRPHDYQ
Sbjct: 138 HACAFAQAQGNPVLACQINMDKNFAFLEFRSIDETSAAMSFDGINFKGQSLKIRRPHDYQ 197
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------------------ 173
P PG++++ +P GV+STVV DSPHK+FIGGLPNYLNEDQ
Sbjct: 198 PMPGMSESQGSVIP-GVVSTVVQDSPHKVFIGGLPNYLNEDQVRELLMSFGQLKAFNLVK 256
Query: 174 -----------------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
AIAGLNGMQLGDKKLIVQRASVGAKN S PVQIQ
Sbjct: 257 DTATGLSKGYAFCEYAEVTITDDAIAGLNGMQLGDKKLIVQRASVGAKN-SNMAVPVQIQ 315
Query: 211 VPGLTQV--GQAGPATE 225
VPG+ V G +GPATE
Sbjct: 316 VPGMPNVPIGSSGPATE 332
>gi|390479436|ref|XP_002762565.2| PREDICTED: splicing factor U2AF 65 kDa subunit [Callithrix jacchus]
Length = 453
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 97 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 156
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 157 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 216
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 217 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 275
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 276 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 335
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 336 PVTLQVPGLMSSQVQMGGHPTE 357
>gi|440900150|gb|ELR51345.1| Splicing factor U2AF 65 kDa subunit, partial [Bos grunniens mutus]
Length = 411
Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 51 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 110
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 111 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 170
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 171 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 229
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 230 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 289
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 290 PVTLQVPGLMSSQVQMGGHPTE 311
>gi|197692223|dbj|BAG70075.1| U2 small nuclear RNA auxiliary factor 2 isoform b [Homo sapiens]
gi|197692475|dbj|BAG70201.1| U2 small nuclear RNA auxiliary factor 2 isoform b [Homo sapiens]
Length = 471
Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENLSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 351 PVTLQVPGLMSSQVQMGGHPTE 372
>gi|260800970|ref|XP_002595369.1| hypothetical protein BRAFLDRAFT_113856 [Branchiostoma floridae]
gi|229280615|gb|EEN51381.1| hypothetical protein BRAFLDRAFT_113856 [Branchiostoma floridae]
Length = 524
Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/251 (61%), Positives = 173/251 (68%), Gaps = 50/251 (19%)
Query: 22 IPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG 81
IP + A A A+P+ GS +TRQARRLYVGNIPFGVTE+ M++FFN QMH + LAQA G
Sbjct: 178 IPSAALLANAGTAMPI-GSQMTRQARRLYVGNIPFGVTEEAMIDFFNTQMHRASLAQAPG 236
Query: 82 NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA 141
NPVLACQ+NLDKNFAFLEFRS+DETT AMAFDGI F+GQSLK+RRPHDYQP PG+ +N
Sbjct: 237 NPVLACQVNLDKNFAFLEFRSVDETTLAMAFDGIIFQGQSLKLRRPHDYQPVPGMAENPD 296
Query: 142 VAVPA------GVISTVVPDSPHKIFIGGLPNYLNE------------------------ 171
+ VP GV+STVV DSPHKIFIGGLPNYLN+
Sbjct: 297 IHVPGGFPVIPGVVSTVVQDSPHKIFIGGLPNYLNDDQVKELLLSFGQLKAFNLVKDSST 356
Query: 172 -----------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGL 214
DQAIAGLNGMQLGDKKLIVQRASVGAKNA Q PVQ+Q+PGL
Sbjct: 357 ALSKGYAFCEYVDPNVTDQAIAGLNGMQLGDKKLIVQRASVGAKNAQNQ--PVQLQIPGL 414
Query: 215 TQVGQAGPATE 225
T G AGP TE
Sbjct: 415 TLTGNAGPPTE 425
>gi|301782083|ref|XP_002926459.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Ailuropoda
melanoleuca]
Length = 496
Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 137 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 196
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 197 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 256
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 257 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 315
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 316 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 375
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 376 PVTLQVPGLMSSQVQMGGHPTE 397
>gi|327280715|ref|XP_003225097.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Anolis carolinensis]
Length = 456
Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 97 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 156
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 157 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 216
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 217 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 275
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 276 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 335
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 336 PVTLQVPGLMSSQVQMGGHPTE 357
>gi|344270173|ref|XP_003406920.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor U2AF 65 kDa
subunit-like [Loxodonta africana]
Length = 471
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 351 PVTLQVPGLMSSQVQMGGHPTE 372
>gi|63101571|gb|AAH94451.1| U2af2 protein, partial [Mus musculus]
Length = 403
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 44 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 103
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 104 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 163
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 164 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 222
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 223 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 282
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 283 PVTLQVPGLMSSQVQMGGHPTE 304
>gi|297302956|ref|XP_001119590.2| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial
[Macaca mulatta]
Length = 432
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 351 PVTLQVPGLMSSQVQMGGHPTE 372
>gi|60279268|ref|NP_001012496.1| splicing factor U2AF 65 kDa subunit isoform b [Homo sapiens]
gi|164565377|ref|NP_598432.2| splicing factor U2AF 65 kDa subunit isoform 2 [Mus musculus]
gi|109461136|ref|XP_001060115.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 6 [Rattus
norvegicus]
gi|338709958|ref|XP_001496159.3| PREDICTED: splicing factor U2AF 65 kDa subunit [Equus caballus]
gi|348551787|ref|XP_003461710.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 1 [Cavia
porcellus]
gi|359318549|ref|XP_003638845.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Canis lupus
familiaris]
gi|395861318|ref|XP_003802936.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Otolemur garnettii]
gi|397471087|ref|XP_003807136.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Pan paniscus]
gi|403308602|ref|XP_003944746.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Saimiri boliviensis
boliviensis]
gi|14250571|gb|AAH08740.1| U2 small nuclear RNA auxiliary factor 2 [Homo sapiens]
gi|27695339|gb|AAH43071.1| U2af2 protein [Mus musculus]
gi|39644972|gb|AAH30574.1| U2 small nuclear RNA auxiliary factor 2 [Homo sapiens]
gi|119592810|gb|EAW72404.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_c [Homo
sapiens]
gi|148699339|gb|EDL31286.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2,
isoform CRA_a [Mus musculus]
gi|149016700|gb|EDL75886.1| similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b
[Rattus norvegicus]
gi|261858294|dbj|BAI45669.1| U2 small nuclear RNA auxiliary factor 2 [synthetic construct]
gi|325463253|gb|ADZ15397.1| U2 small nuclear RNA auxiliary factor 2 [synthetic construct]
gi|380783067|gb|AFE63409.1| splicing factor U2AF 65 kDa subunit isoform b [Macaca mulatta]
gi|389618965|gb|AFK92990.1| U2 small nuclear RNA auxiliary factor 2 [Sus scrofa]
gi|410212802|gb|JAA03620.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410260572|gb|JAA18252.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410291502|gb|JAA24351.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|431902970|gb|ELK09152.1| Splicing factor U2AF 65 kDa subunit [Pteropus alecto]
Length = 471
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 351 PVTLQVPGLMSSQVQMGGHPTE 372
>gi|410351435|gb|JAA42321.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 471
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 351 PVTLQVPGLMSSQVQMGGHPTE 372
>gi|410982179|ref|XP_003997437.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Felis catus]
Length = 471
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 351 PVTLQVPGLMSSQVQMGGHPTE 372
>gi|384939342|gb|AFI33276.1| splicing factor U2AF 65 kDa subunit isoform b [Macaca mulatta]
Length = 471
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 351 PVTLQVPGLMSSQVQMGGHPTE 372
>gi|417410850|gb|JAA51891.1| Putative splicing factor u2af large subunit rrm superfamily,
partial [Desmodus rotundus]
Length = 455
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 96 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 155
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 156 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 215
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 216 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 274
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 275 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 334
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 335 PVTLQVPGLMSSQVQMGGHPTE 356
>gi|444724150|gb|ELW64768.1| Splicing factor U2AF 65 kDa subunit [Tupaia chinensis]
Length = 447
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 88 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 147
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 148 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 207
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 208 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 266
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 267 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 326
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 327 PVTLQVPGLMSSQVQMGGHPTE 348
>gi|348510223|ref|XP_003442645.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oreochromis niloticus]
Length = 467
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/260 (60%), Positives = 179/260 (68%), Gaps = 47/260 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAA--AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP ++ +T AAA VP+VGS +TRQARRLYVGNIPFGVTE+ M EFFN
Sbjct: 111 AAGQIPTIALLATSTTTGVAAAPTQVPIVGSQMTRQARRLYVGNIPFGVTEESMAEFFNA 170
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L+GL+QA NPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 171 QMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 230
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG+++ A VP GV+STVVPDSPHK+FIGGLPNYLN+
Sbjct: 231 YRPLPGISEQPAFHVP-GVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 289
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQA+AGLNGMQLGDKKLIVQRASVGAKNA S +
Sbjct: 290 VKDSATSLSKGYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIET 349
Query: 206 PVQIQVPGLTQVGQAGPATE 225
PV +QVPGL ++ +G TE
Sbjct: 350 PVTLQVPGLQRLQNSGMPTE 369
>gi|147902896|ref|NP_001080595.1| U2 small nuclear RNA auxiliary factor 2 [Xenopus laevis]
gi|111185517|gb|AAH44032.2| U2af2 protein [Xenopus laevis]
Length = 456
Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 97 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 156
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 157 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 216
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 217 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 275
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 276 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 335
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 336 PVTLQVPGLMSSQVQMGGHPTE 357
>gi|348510219|ref|XP_003442643.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oreochromis niloticus]
Length = 466
Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/260 (60%), Positives = 179/260 (68%), Gaps = 47/260 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAA--AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP ++ +T AAA VP+VGS +TRQARRLYVGNIPFGVTE+ M EFFN
Sbjct: 110 AAGQIPTIALLATSTTTGVAAAPTQVPIVGSQMTRQARRLYVGNIPFGVTEESMAEFFNA 169
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L+GL+QA NPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 170 QMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 229
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG+++ A VP GV+STVVPDSPHK+FIGGLPNYLN+
Sbjct: 230 YRPLPGISEQPAFHVP-GVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 288
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQA+AGLNGMQLGDKKLIVQRASVGAKNA S +
Sbjct: 289 VKDSATSLSKGYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPTSIIET 348
Query: 206 PVQIQVPGLTQVGQAGPATE 225
PV +QVPGL ++ +G TE
Sbjct: 349 PVTLQVPGLQRLQNSGMPTE 368
>gi|47575746|ref|NP_001001217.1| U2 small nuclear RNA auxiliary factor 2 isoform 2 [Xenopus
(Silurana) tropicalis]
gi|45709722|gb|AAH67966.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
[Xenopus (Silurana) tropicalis]
Length = 456
Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 97 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 156
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 157 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 216
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 217 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 275
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 276 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 335
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 336 PVTLQVPGLMSSQVQMGGHPTE 357
>gi|348526426|ref|XP_003450720.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oreochromis niloticus]
Length = 487
Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 177/257 (68%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 128 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 187
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 188 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 247
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 248 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 306
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KNA S Q
Sbjct: 307 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLSSINQT 366
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 367 PVTLQVPGLNSSVTQMG 383
>gi|351710523|gb|EHB13442.1| Splicing factor U2AF 65 kDa subunit [Heterocephalus glaber]
Length = 904
Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats.
Identities = 160/262 (61%), Positives = 179/262 (68%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 185 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 244
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 245 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 304
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 305 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 363
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG---QQA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 364 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 423
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 424 PVTLQVPGLMSSQVQMGGHPTE 445
>gi|348526424|ref|XP_003450719.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oreochromis niloticus]
Length = 475
Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 177/257 (68%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 116 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 175
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 176 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 235
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 236 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 294
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KNA S Q
Sbjct: 295 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLSSINQT 354
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 355 PVTLQVPGLNSSVTQMG 371
>gi|432908697|ref|XP_004077989.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oryzias latipes]
Length = 474
Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 177/257 (68%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 115 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 174
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 175 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 234
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 235 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 293
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KNA S Q
Sbjct: 294 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLTSINQT 353
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 354 PVTLQVPGLNSSVTQMG 370
>gi|47221657|emb|CAF97922.1| unnamed protein product [Tetraodon nigroviridis]
Length = 458
Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 177/257 (68%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 99 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 158
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 159 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 218
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 219 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 277
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KNA S Q
Sbjct: 278 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLTSINQT 337
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 338 PVTLQVPGLNSSVTQMG 354
>gi|348510221|ref|XP_003442644.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oreochromis niloticus]
Length = 467
Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 155/261 (59%), Positives = 178/261 (68%), Gaps = 48/261 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAA--AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP ++ +T AAA VP+VGS +TRQARRLYVGNIPFGVTE+ M EFFN
Sbjct: 110 AAGQIPTIALLATSTTTGVAAAPTQVPIVGSQMTRQARRLYVGNIPFGVTEESMAEFFNA 169
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L+GL+QA NPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 170 QMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 229
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG+++ A VP GV+STVVPDSPHK+FIGGLPNYLN+
Sbjct: 230 YRPLPGISEQPAFHVP-GVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 288
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA----SGQQ 204
DQA+AGLNGMQLGDKKLIVQRASVGAKNA +
Sbjct: 289 VKDSATSLSKGYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPVSTSGN 348
Query: 205 APVQIQVPGLTQVGQAGPATE 225
PV +QVPGL ++ +G TE
Sbjct: 349 TPVTLQVPGLQRLQNSGMPTE 369
>gi|348526428|ref|XP_003450721.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oreochromis niloticus]
Length = 458
Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 177/257 (68%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 99 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 158
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 159 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 218
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 219 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 277
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KNA S Q
Sbjct: 278 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLSSINQT 337
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 338 PVTLQVPGLNSSVTQMG 354
>gi|355756173|gb|EHH59920.1| hypothetical protein EGM_10153, partial [Macaca fascicularis]
Length = 442
Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 99 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 158
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 159 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 218
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 219 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 277
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 278 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 337
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 338 INQTPVTLQVPGLMSSQVQMGGHPTE 363
>gi|432908699|ref|XP_004077990.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oryzias latipes]
Length = 479
Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 177/257 (68%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 120 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 179
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 180 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 239
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 240 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 298
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KNA S Q
Sbjct: 299 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLTSINQT 358
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 359 PVTLQVPGLNSSVTQMG 375
>gi|297277970|ref|XP_001091568.2| PREDICTED: splicing factor U2AF 65 kDa subunit [Macaca mulatta]
Length = 471
Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 108 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 167
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 168 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 227
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 228 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 286
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 287 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 346
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 347 INQTPVTLQVPGLMSSQVQMGGHPTE 372
>gi|355703931|gb|EHH30422.1| hypothetical protein EGK_11092, partial [Macaca mulatta]
Length = 453
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 99 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 158
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 159 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 218
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 219 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 277
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 278 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 337
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 338 INQTPVTLQVPGLMSSQVQMGGHPTE 363
>gi|1334149|emb|CAA45875.1| unnamed protein product [Mus musculus]
Length = 492
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 129 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 188
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 189 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 248
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 249 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 307
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 308 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPST 367
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 368 INQTPVTLQVPGLMSSQVQMGGHPTE 393
>gi|432908695|ref|XP_004077988.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oryzias latipes]
Length = 458
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 177/257 (68%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 99 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 158
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 159 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 218
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 219 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 277
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KNA S Q
Sbjct: 278 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLTSINQT 337
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 338 PVTLQVPGLNSSVTQMG 354
>gi|327365322|ref|NP_001192160.1| splicing factor U2AF 65 kDa subunit isoform 1 [Mus musculus]
gi|348551789|ref|XP_003461711.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 2 [Cavia
porcellus]
gi|392343893|ref|XP_003748811.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Rattus norvegicus]
gi|136628|sp|P26369.3|U2AF2_MOUSE RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor large subunit
gi|55101|emb|CAA45874.1| splicing factor U2AF [Mus musculus]
gi|26347321|dbj|BAC37309.1| unnamed protein product [Mus musculus]
Length = 475
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>gi|115496604|ref|NP_001068804.1| splicing factor U2AF 65 kDa subunit [Bos taurus]
gi|89994093|gb|AAI14161.1| U2 small nuclear RNA auxiliary factor 2 [Bos taurus]
gi|296477253|tpg|DAA19368.1| TPA: U2 (RNU2) small nuclear RNA auxiliary factor 2 [Bos taurus]
Length = 475
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPLST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>gi|410351437|gb|JAA42322.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 475
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>gi|228543|prf||1805352A splicing factor U2AF:SUBUNIT=large
Length = 475
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>gi|6005926|ref|NP_009210.1| splicing factor U2AF 65 kDa subunit isoform a [Homo sapiens]
gi|267188|sp|P26368.4|U2AF2_HUMAN RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=hU2AF(65);
Short=hU2AF65; AltName: Full=U2 snRNP auxiliary factor
large subunit
gi|37545|emb|CAA45409.1| splicing factor U2AF [Homo sapiens]
gi|380783065|gb|AFE63408.1| splicing factor U2AF 65 kDa subunit isoform a [Macaca mulatta]
gi|410212804|gb|JAA03621.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410260574|gb|JAA18253.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410291504|gb|JAA24352.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 475
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>gi|384939340|gb|AFI33275.1| splicing factor U2AF 65 kDa subunit isoform a [Macaca mulatta]
Length = 475
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>gi|62859443|ref|NP_001016998.1| U2 small nuclear RNA auxiliary factor 2 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|89269799|emb|CAJ83531.1| U2 (RNU2) small nuclear RNA auxiliary factor 2 [Xenopus (Silurana)
tropicalis]
gi|115292148|gb|AAI22001.1| U2 small nuclear RNA auxiliary factor 2 [Xenopus (Silurana)
tropicalis]
Length = 465
Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/271 (59%), Positives = 179/271 (66%), Gaps = 58/271 (21%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 97 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 156
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 157 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 216
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 217 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVTMESLSLWVKELLTS 275
Query: 172 --------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKN 199
DQAIAGLNGMQLGDKKL+VQRASVGAKN
Sbjct: 276 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 335
Query: 200 ASGQ---QAPVQIQVPGL--TQVGQAGPATE 225
A+ Q PV +QVPGL +QV G TE
Sbjct: 336 ATLSTINQTPVTLQVPGLMSSQVQMGGHPTE 366
>gi|312372039|gb|EFR20089.1| hypothetical protein AND_20681 [Anopheles darlingi]
Length = 384
Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/217 (70%), Positives = 159/217 (73%), Gaps = 46/217 (21%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIPAN+ VA AAVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 113 AAGQIPANI------VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 166
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFD INFKGQSLKIRRPHDYQ
Sbjct: 167 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQ 226
Query: 132 PTPGVTDNAAVAVP---AGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKKL 188
P PG+TD+A V VP +GVISTVVPDS HKIFIGGLPNYLNED
Sbjct: 227 PMPGMTDSATVNVPEKFSGVISTVVPDSAHKIFIGGLPNYLNED---------------- 270
Query: 189 IVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
QVPGL+ VG +GP TE
Sbjct: 271 ---------------------QVPGLSLVGSSGPPTE 286
>gi|71480064|ref|NP_001025127.1| U2 small nuclear RNA auxiliary factor 2a [Danio rerio]
gi|68533572|gb|AAH98548.1| U2 small nuclear RNA auxiliary factor 2a [Danio rerio]
Length = 465
Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/258 (60%), Positives = 176/258 (68%), Gaps = 49/258 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAAA--VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 105 AAGQIPATALLPTMTPEGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 164
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 165 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 224
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 225 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 283
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG---QQA 205
DQAIAGLNGMQLGDKKL+VQRASVG+KN + Q
Sbjct: 284 VKDSATGLSKGYAFCEYVDVNISDQAIAGLNGMQLGDKKLLVQRASVGSKNTTLTGINQT 343
Query: 206 PVQIQVPGL--TQVGQAG 221
PV +QVPGL + V Q G
Sbjct: 344 PVTLQVPGLMNSSVNQMG 361
>gi|327280717|ref|XP_003225098.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Anolis carolinensis]
Length = 467
Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 160/273 (58%), Positives = 179/273 (65%), Gaps = 60/273 (21%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 97 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 156
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 157 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 216
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 217 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVMFLPPFLSCQVKELL 275
Query: 172 ----------------------------------DQAIAGLNGMQLGDKKLIVQRASVGA 197
DQAIAGLNGMQLGDKKL+VQRASVGA
Sbjct: 276 TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 335
Query: 198 KNASGQ---QAPVQIQVPGL--TQVGQAGPATE 225
KNA+ Q PV +QVPGL +QV G TE
Sbjct: 336 KNATLSTINQTPVTLQVPGLMSSQVQMGGHPTE 368
>gi|291190480|ref|NP_001167275.1| Splicing factor U2AF 65 kDa subunit [Salmo salar]
gi|223648990|gb|ACN11253.1| Splicing factor U2AF 65 kDa subunit [Salmo salar]
Length = 474
Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 153/250 (61%), Positives = 173/250 (69%), Gaps = 48/250 (19%)
Query: 12 AAGQIPANVIIPETTVAAA---AAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFN 68
AAGQIPA ++P A +VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 113 AAGQIPATALLPTMITPEGLPPAPTSVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFN 172
Query: 69 QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPH 128
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPH
Sbjct: 173 AQMCLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH 232
Query: 129 DYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
DYQP PG++++ +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 233 DYQPLPGMSESPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 291
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS---GQQ 204
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 292 LVKDSATALSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGAKNAALTGMNQ 351
Query: 205 APVQIQVPGL 214
PV +QVPGL
Sbjct: 352 TPVTLQVPGL 361
>gi|405976087|gb|EKC40607.1| Splicing factor U2AF 50 kDa subunit [Crassostrea gigas]
Length = 428
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/254 (60%), Positives = 172/254 (67%), Gaps = 48/254 (18%)
Query: 13 AGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH 72
AGQIP + +P A VP GS I+RQARRLYVGNIPFGVTE+ MM+FFN QM
Sbjct: 84 AGQIPQAISVPNV---ALTNTTVPFAGSAISRQARRLYVGNIPFGVTEEAMMDFFNHQMK 140
Query: 73 LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
++GLAQA G+PV+A QINLDKNFAFLEFRS+DETTQAMAFDGINF+GQSLKIRRP DYQP
Sbjct: 141 MTGLAQAEGSPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQP 200
Query: 133 TPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE--------------------- 171
PG+ + +V VP GV+STVV DSPHKIFIGGLPNYLNE
Sbjct: 201 LPGMAETPSVNVP-GVVSTVVQDSPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKD 259
Query: 172 --------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
DQ AGLNGMQLGDKKLIVQRAS+GAKN+ Q PVQ+Q+
Sbjct: 260 SATGLSKGYAFCEYVDPNVTDQGCAGLNGMQLGDKKLIVQRASLGAKNS---QVPVQLQI 316
Query: 212 PGLTQVGQAGPATE 225
PGL AGP TE
Sbjct: 317 PGLNLNQGAGPPTE 330
>gi|45387787|ref|NP_991252.1| U2 small nuclear RNA auxiliary factor 2b [Danio rerio]
gi|41389016|gb|AAH65869.1| U2 small nuclear RNA auxiliary factor 2b [Danio rerio]
Length = 475
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/250 (61%), Positives = 172/250 (68%), Gaps = 47/250 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 115 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 174
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+ QSLKIRRPHD
Sbjct: 175 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQAQSLKIRRPHD 234
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 235 YQPLPGMSENPSVYVP-GVVSTVVPDSIHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 293
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQL DKKL+VQRASVGAKNA S +
Sbjct: 294 VKDSATGLSKGYAFCEYVDVNVNDQAIAGLNGMQLADKKLLVQRASVGAKNATMTSINET 353
Query: 206 PVQIQVPGLT 215
PV +QVPGLT
Sbjct: 354 PVTLQVPGLT 363
>gi|50882018|gb|AAT85577.1| U2 small nuclear ribonucleoprotein auxiliary factor large subunit
[Alvinella pompejana]
Length = 479
Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/255 (59%), Positives = 172/255 (67%), Gaps = 46/255 (18%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG 75
I AN ++ T A +P GS I+RQARRLYVGNIPFGVTE+ MM++FN QM ++G
Sbjct: 128 IAANNVVASPTAPMALNTTIPFAGSAISRQARRLYVGNIPFGVTEEMMMDYFNTQMKMAG 187
Query: 76 LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
LAQA GNPV+AC +NLDKNFAFLEFRS+DETTQAMAFDGINF+GQSLKIRRP DYQP PG
Sbjct: 188 LAQAEGNPVIACHVNLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPKDYQPLPG 247
Query: 136 VTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------------ 171
+ + +VAVP GV+STVV DS HKIFIGGLPNYLNE
Sbjct: 248 MAEVPSVAVP-GVVSTVVQDSAHKIFIGGLPNYLNEDQVKELLTSFGLLKAFNLVKDSAT 306
Query: 172 -----------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG--QQAPVQIQVP 212
DQA AGLNGMQLGD+KLIVQRASVGAKNA G PVQ+Q+P
Sbjct: 307 GLSKGYAFCEYLDPSITDQACAGLNGMQLGDEKLIVQRASVGAKNAQGGPNVLPVQLQIP 366
Query: 213 GLT--QVGQAGPATE 225
GL QV GP TE
Sbjct: 367 GLNMAQVQGPGPTTE 381
>gi|354486866|ref|XP_003505598.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Cricetulus
griseus]
gi|344242983|gb|EGV99086.1| Splicing factor U2AF 65 kDa subunit [Cricetulus griseus]
Length = 469
Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/262 (58%), Positives = 177/262 (67%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAAA--VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A+ VPVVGS +TRQARRLYVGNIPFG+TE+ M +FFN
Sbjct: 110 AAGQIPATALLPTVTSDGLVASPMPVPVVGSQMTRQARRLYVGNIPFGITEEAMKDFFNA 169
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L L Q GNPVLA QIN +KNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 170 QMQLGVLTQVPGNPVLAVQINQEKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 229
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGG+P+YLN+
Sbjct: 230 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGMPSYLNDDKVKELLTSFGTLKAFNL 288
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKLIVQRASVG+KNA+ Q
Sbjct: 289 VKDSATGLSKGYAFCEYLDINATDQAIAGLNGMQLGDKKLIVQRASVGSKNATLSTINQT 348
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 349 PVTVQVPGLMSSQVQMGGHPTE 370
>gi|410903105|ref|XP_003965034.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Takifugu rubripes]
Length = 454
Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 157/260 (60%), Positives = 178/260 (68%), Gaps = 47/260 (18%)
Query: 12 AAGQIPA--NVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP + T AAAA VPVVGS +TRQARRLYVGNIPFGVTE+ M EFFN
Sbjct: 98 AAGQIPTIALLATGAATGAAAAPTQVPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNA 157
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L+GL+QA NPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 158 QMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 217
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG+++ VP GV+STVVPDSPHK+FIGGLPNYLN+
Sbjct: 218 YRPLPGISEQPVFHVP-GVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 276
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQA+AGLNGMQLGDKKLIVQRASVGAKNA+ +A
Sbjct: 277 VKDSATSLSKGYAFCEYVDVSATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPSAIIEA 336
Query: 206 PVQIQVPGLTQVGQAGPATE 225
PV +QVPGL ++ +G TE
Sbjct: 337 PVTLQVPGLQRLQNSGMPTE 356
>gi|410903107|ref|XP_003965035.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Takifugu rubripes]
Length = 461
Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 157/260 (60%), Positives = 178/260 (68%), Gaps = 47/260 (18%)
Query: 12 AAGQIPA--NVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP + T AAAA VPVVGS +TRQARRLYVGNIPFGVTE+ M EFFN
Sbjct: 105 AAGQIPTIALLATGAATGAAAAPTQVPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNA 164
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L+GL+QA NPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 165 QMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 224
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG+++ VP GV+STVVPDSPHK+FIGGLPNYLN+
Sbjct: 225 YRPLPGISEQPVFHVP-GVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 283
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQA+AGLNGMQLGDKKLIVQRASVGAKNA+ +A
Sbjct: 284 VKDSATSLSKGYAFCEYVDVSATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPSAIIEA 343
Query: 206 PVQIQVPGLTQVGQAGPATE 225
PV +QVPGL ++ +G TE
Sbjct: 344 PVTLQVPGLQRLQNSGMPTE 363
>gi|119592808|gb|EAW72402.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_a [Homo
sapiens]
Length = 376
Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 149/240 (62%), Positives = 166/240 (69%), Gaps = 44/240 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQ 208
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ P Q
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPAQ 350
>gi|410903103|ref|XP_003965033.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Takifugu rubripes]
Length = 446
Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 157/260 (60%), Positives = 178/260 (68%), Gaps = 47/260 (18%)
Query: 12 AAGQIPA--NVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP + T AAAA VPVVGS +TRQARRLYVGNIPFGVTE+ M EFFN
Sbjct: 90 AAGQIPTIALLATGAATGAAAAPTQVPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNA 149
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L+GL+QA NPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 150 QMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 209
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG+++ VP GV+STVVPDSPHK+FIGGLPNYLN+
Sbjct: 210 YRPLPGISEQPVFHVP-GVVSTVVPDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 268
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQA+AGLNGMQLGDKKLIVQRASVGAKNA+ +A
Sbjct: 269 VKDSATSLSKGYAFCEYVDVSATDQAVAGLNGMQLGDKKLIVQRASVGAKNANPSAIIEA 328
Query: 206 PVQIQVPGLTQVGQAGPATE 225
PV +QVPGL ++ +G TE
Sbjct: 329 PVTLQVPGLQRLQNSGMPTE 348
>gi|119592809|gb|EAW72403.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_b [Homo
sapiens]
Length = 356
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/233 (63%), Positives = 164/233 (70%), Gaps = 44/233 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNAT 343
>gi|148699340|gb|EDL31287.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2,
isoform CRA_b [Mus musculus]
Length = 356
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/233 (63%), Positives = 164/233 (70%), Gaps = 44/233 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNAT 343
>gi|410905623|ref|XP_003966291.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Takifugu
rubripes]
Length = 458
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/257 (59%), Positives = 172/257 (66%), Gaps = 51/257 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 99 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 158
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 159 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 218
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 219 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 277
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQA 205
DQAIAGLNGMQLGDKKL+VQRAS + S Q
Sbjct: 278 VKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASXXXXXSFQTSINQT 337
Query: 206 PVQIQVPGL----TQVG 218
PV +QVPGL TQ+G
Sbjct: 338 PVTLQVPGLNSSVTQMG 354
>gi|195393580|ref|XP_002055432.1| GJ19364 [Drosophila virilis]
gi|194149942|gb|EDW65633.1| GJ19364 [Drosophila virilis]
Length = 476
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/190 (74%), Positives = 155/190 (81%), Gaps = 10/190 (5%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQ LKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQDLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNG-MQLGDKK 187
P PG+TD AV V +GVISTVVPDSPHKIFIGGLPNYLN++Q LN + +G K
Sbjct: 178 PMPGITDTPAVKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDEQKEFTLNAFLDIGACK 237
Query: 188 LIVQRASVGA 197
+ + GA
Sbjct: 238 KVTPHTNTGA 247
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 44/57 (77%), Gaps = 3/57 (5%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQAPVQIQVPGLTQVGQAGPATE 225
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+ V +QVPGL+ V +GP TE
Sbjct: 322 DQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTSQSVMLQVPGLSTVVTSGPPTE 378
>gi|309271453|ref|XP_003085312.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Mus musculus]
Length = 730
Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 169/250 (67%), Gaps = 47/250 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAAA--VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQI A ++P T A VPVVGS +TRQARRLYVG IPFG+TE+ M++F N
Sbjct: 371 AAGQILATALLPTMTPGGLAVTPMPVPVVGSQMTRQARRLYVGTIPFGITEESMLDFLNT 430
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QMHL GL QA GNP+LA QINLDKNFAFLEFRS+DETTQA+AFDGI F+GQSLKIRRPHD
Sbjct: 431 QMHLRGLTQAPGNPILAVQINLDKNFAFLEFRSVDETTQALAFDGIIFQGQSLKIRRPHD 490
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG++ + +V VP GV+ST+VPDS HK+FIGGLPNYLN+
Sbjct: 491 YQPLPGMSGSPSVYVP-GVVSTIVPDSAHKLFIGGLPNYLNDDQVKELLTSVGILRAFNL 549
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIA LNGM LGDKKL+VQRASVGAKN + Q
Sbjct: 550 VKDSITGLSKGYAFCEYMDINVTDQAIAWLNGMHLGDKKLLVQRASVGAKNVALSIINQT 609
Query: 206 PVQIQVPGLT 215
PV +QVPGLT
Sbjct: 610 PVTLQVPGLT 619
>gi|148697816|gb|EDL29763.1| mCG68163 [Mus musculus]
Length = 472
Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 169/250 (67%), Gaps = 47/250 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAAA--VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQI A ++P T A VPVVGS +TRQARRLYVG IPFG+TE+ M++F N
Sbjct: 113 AAGQILATALLPTMTPGGLAVTPMPVPVVGSQMTRQARRLYVGTIPFGITEESMLDFLNT 172
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QMHL GL QA GNP+LA QINLDKNFAFLEFRS+DETTQA+AFDGI F+GQSLKIRRPHD
Sbjct: 173 QMHLRGLTQAPGNPILAVQINLDKNFAFLEFRSVDETTQALAFDGIIFQGQSLKIRRPHD 232
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG++ + +V VP GV+ST+VPDS HK+FIGGLPNYLN+
Sbjct: 233 YQPLPGMSGSPSVYVP-GVVSTIVPDSAHKLFIGGLPNYLNDDQVKELLTSVGILRAFNL 291
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIA LNGM LGDKKL+VQRASVGAKN + Q
Sbjct: 292 VKDSITGLSKGYAFCEYMDINVTDQAIAWLNGMHLGDKKLLVQRASVGAKNVALSIINQT 351
Query: 206 PVQIQVPGLT 215
PV +QVPGLT
Sbjct: 352 PVTLQVPGLT 361
>gi|309266895|ref|XP_003086891.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial [Mus
musculus]
Length = 493
Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 169/250 (67%), Gaps = 47/250 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAAAA--VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQI A ++P T A VPVVGS +TRQARRLYVG IPFG+TE+ M++F N
Sbjct: 134 AAGQILATALLPTMTPGGLAVTPMPVPVVGSQMTRQARRLYVGTIPFGITEESMLDFLNT 193
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QMHL GL QA GNP+LA QINLDKNFAFLEFRS+DETTQA+AFDGI F+GQSLKIRRPHD
Sbjct: 194 QMHLRGLTQAPGNPILAVQINLDKNFAFLEFRSVDETTQALAFDGIIFQGQSLKIRRPHD 253
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG++ + +V VP GV+ST+VPDS HK+FIGGLPNYLN+
Sbjct: 254 YQPLPGMSGSPSVYVP-GVVSTIVPDSAHKLFIGGLPNYLNDDQVKELLTSVGILRAFNL 312
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIA LNGM LGDKKL+VQRASVGAKN + Q
Sbjct: 313 VKDSITGLSKGYAFCEYMDINVTDQAIAWLNGMHLGDKKLLVQRASVGAKNVALSIINQT 372
Query: 206 PVQIQVPGLT 215
PV +QVPGLT
Sbjct: 373 PVTLQVPGLT 382
>gi|410903109|ref|XP_003965036.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 4
[Takifugu rubripes]
Length = 455
Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 157/269 (58%), Positives = 178/269 (66%), Gaps = 56/269 (20%)
Query: 12 AAGQIPA--NVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP + T AAAA VPVVGS +TRQARRLYVGNIPFGVTE+ M EFFN
Sbjct: 90 AAGQIPTIALLATGAATGAAAAPTQVPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNA 149
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L+GL+QA NPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 150 QMRLAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 209
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG+++ VP GV+STVVPDSPHK+FIGGLPNYLN+
Sbjct: 210 YRPLPGISEQPVFHVP-GVVSTVVPDSPHKLFIGGLPNYLNDDQVLIRRLGWRVKELLTS 268
Query: 172 --------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKN 199
DQA+AGLNGMQLGDKKLIVQRASVGAKN
Sbjct: 269 FGPLKAFNLVKDSATSLSKGYAFCEYVDVSATDQAVAGLNGMQLGDKKLIVQRASVGAKN 328
Query: 200 ASGQ---QAPVQIQVPGLTQVGQAGPATE 225
A+ +APV +QVPGL ++ +G TE
Sbjct: 329 ANPSAIIEAPVTLQVPGLQRLQNSGMPTE 357
>gi|443731660|gb|ELU16702.1| hypothetical protein CAPTEDRAFT_155651 [Capitella teleta]
Length = 480
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/235 (61%), Positives = 164/235 (69%), Gaps = 45/235 (19%)
Query: 35 VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN 94
+P GS I+RQARRLYVGNIPFGVTE+ MM+FFN QM ++ L+QA GNPV+ACQ+NLDKN
Sbjct: 149 IPFAGSAISRQARRLYVGNIPFGVTEEMMMDFFNTQMKMAALSQAEGNPVIACQVNLDKN 208
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVP 154
FAFLE+RS+DETT AMA DGINF+GQSLKIRRP DYQP PG+ + VAVP GV+STVV
Sbjct: 209 FAFLEYRSVDETTHAMALDGINFQGQSLKIRRPKDYQPLPGIAETPNVAVP-GVVSTVVQ 267
Query: 155 DSPHKIFIGGLPNYLNE-----------------------------------------DQ 173
DS HKIFIGGLPNYLNE DQ
Sbjct: 268 DSAHKIFIGGLPNYLNEDQVKELLTSFGPLKAFSLVKDSATGLSKGYAFCEYLDISITDQ 327
Query: 174 AIAGLNGMQLGDKKLIVQRASVGAKNAS-GQQAPVQIQVPGL--TQVGQAGPATE 225
A AGLNGMQLGDKKLIVQRASVGAKNA+ AP+Q+Q+PGL + AGPATE
Sbjct: 328 ACAGLNGMQLGDKKLIVQRASVGAKNAAIISSAPMQMQIPGLAVNPMAAAGPATE 382
>gi|198432988|ref|XP_002130386.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 1 [Ciona intestinalis]
Length = 482
Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/258 (58%), Positives = 172/258 (66%), Gaps = 47/258 (18%)
Query: 12 AAGQIPANVIIPET--TVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIP + +T ++ A A VPV GS +TRQARRLYVGNIPFGVTED MM+FFN
Sbjct: 126 AAGQIPL-MATSQTMGSITAEATLQVPVAGSQMTRQARRLYVGNIPFGVTEDAMMDFFNN 184
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM ++GLAQA G P+LA QINLDKNFAFLEFRS+DETTQA+AFDGINF QSLKIRRP D
Sbjct: 185 QMQIAGLAQAPGQPILAVQINLDKNFAFLEFRSVDETTQALAFDGINFMNQSLKIRRPSD 244
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
Y+P PG + A+ +P GVISTVV DS HK+FIGGLPNYLN+
Sbjct: 245 YKPLPGSLEQPAIHLP-GVISTVVQDSQHKMFIGGLPNYLNDDQVKELLTSFGPLRAFNL 303
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKN--ASGQQAP 206
DQAIAGLNGMQLGDKKLIVQRAS+GAKN AP
Sbjct: 304 VKDSATALSKGYAFAEFADYSLTDQAIAGLNGMQLGDKKLIVQRASIGAKNNPHGAIMAP 363
Query: 207 VQIQVPGLTQVGQAGPAT 224
V +Q+PG+ AGPAT
Sbjct: 364 VTLQIPGMAHATGAGPAT 381
>gi|291241059|ref|XP_002740425.1| PREDICTED: U2 (RNU2) small nuclear RNA auxiliary factor 2-like
[Saccoglossus kowalevskii]
Length = 466
Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 178/265 (67%), Gaps = 55/265 (20%)
Query: 13 AGQIPANVIIPETTVAAAAAAA-VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AGQIP + E +A AAA + +P+VGS +TRQARRLYVGNIPFGVTE+ MM+FFN+QM
Sbjct: 107 AGQIPQTAL--ENQMAQAAANSNMPIVGSQMTRQARRLYVGNIPFGVTEEAMMDFFNRQM 164
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
+ QA GNPVLA QI+L+KNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRP DYQ
Sbjct: 165 KSFRITQAQGNPVLAVQIDLNKNFAFLEFRSVDETTQAMAFDGILFQGQSLKIRRPKDYQ 224
Query: 132 PTPGVTDNAAVAV------PAGVISTVVPDSPHKIFIGGLPNYLNE-------------- 171
P PG+ + +V V P GV+STVVPDSPHKIFIGGLPNYLNE
Sbjct: 225 PVPGMAEMPSVHVPDYLFSPTGVVSTVVPDSPHKIFIGGLPNYLNEDQVKELLTSFGELK 284
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDKKLIVQRASVGAKNA Q
Sbjct: 285 AFNLVKDSATSLSKGYAFCEYIDEKITDQAIAGLNGMQLGDKKLIVQRASVGAKNAQTAQ 344
Query: 205 --APVQIQVPGLTQVGQA--GPATE 225
A + IQVPG+ +GQ GP TE
Sbjct: 345 MIAQLNIQVPGVN-IGQGLVGPTTE 368
>gi|339243511|ref|XP_003377681.1| splicing factor U2AFsubunit [Trichinella spiralis]
gi|316973494|gb|EFV57074.1| splicing factor U2AFsubunit [Trichinella spiralis]
Length = 402
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 169/257 (65%), Gaps = 58/257 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIP ++ A+VPVVG ++T Q+RRLYVGNIPFG TE+ MM+FFNQQM
Sbjct: 63 AAGQIPR----------SSLQASVPVVGPSVTCQSRRLYVGNIPFGCTEEAMMDFFNQQM 112
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQA GNP+LACQINLDKNFAF+EFRSI ETT AMAFDGIN++GQSLKIRRP DYQ
Sbjct: 113 HLCGLAQALGNPILACQINLDKNFAFIEFRSIAETTAAMAFDGINYQGQSLKIRRPRDYQ 172
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG D AG++S+VV DSP+K+FIGGLPNYL+E
Sbjct: 173 PLPGQNDTL-----AGLVSSVVADSPYKLFIGGLPNYLSEEQVKELLISFGQLKAFNLIK 227
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAK-NASGQQAPVQI 209
DQAIAGLNGMQLGDKKL+VQ ASVGAK N APV I
Sbjct: 228 DPATQISKGYAFAEYSDSTLTDQAIAGLNGMQLGDKKLVVQLASVGAKNNMFSAAAPVAI 287
Query: 210 QVPGLTQVGQAG-PATE 225
QVPG+ V A PATE
Sbjct: 288 QVPGMNVVNPAATPATE 304
>gi|321479007|gb|EFX89963.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 1
[Daphnia pulex]
Length = 487
Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 156/284 (54%), Positives = 178/284 (62%), Gaps = 75/284 (26%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVT-----EDEMMEF 66
AAGQIPAN++ A VPVVG+TITRQARRLYVGNIPFGV+ E+EMM+F
Sbjct: 110 AAGQIPANIM-----TEVAPQVQVPVVGNTITRQARRLYVGNIPFGVSDVRAAEEEMMDF 164
Query: 67 FNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
FNQQMHLSGL+QA G+P+LACQINLDKNFAFLEFRSIDET+QAMAFDGINFKGQ+LKIRR
Sbjct: 165 FNQQMHLSGLSQAPGHPILACQINLDKNFAFLEFRSIDETSQAMAFDGINFKGQTLKIRR 224
Query: 127 PHDYQ----------------------PTPGVTDNAA---VAVPAGVISTVVPDSPHKIF 161
PHDY + G+T+ A G +ST+VPD+PHK+F
Sbjct: 225 PHDYHPTPGGGGGGGGGGGGPETTPGMSSGGITEKRAGGGGGGGGGTMSTIVPDTPHKLF 284
Query: 162 IGGLPNYLNE---------------------------------------DQAIAGLNGMQ 182
IGGLPNYLNE DQAI+GLNGMQ
Sbjct: 285 IGGLPNYLNEEQELLMSFGQLRAFNLVKDTATGLSKGYAFCEYADVTVTDQAISGLNGMQ 344
Query: 183 LGDKKLIVQRASVGAKNASGQ-QAPVQIQVPGLTQVGQAGPATE 225
LGDKK+I+QRASVGAKNA+ Q PVQIQVPG G TE
Sbjct: 345 LGDKKIIIQRASVGAKNAAAYAQMPVQIQVPGFNLAAGPGQPTE 388
>gi|198432986|ref|XP_002130494.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 2 [Ciona intestinalis]
Length = 472
Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/254 (57%), Positives = 166/254 (65%), Gaps = 49/254 (19%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIP ++ + + A VPV GS +TRQARRLYVGNIPFGVTED MM+FFN QM
Sbjct: 126 AAGQIP---LMATSQTMGSITAEVPVAGSQMTRQARRLYVGNIPFGVTEDAMMDFFNNQM 182
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
++GLAQA G P+LA QINLDKNFAFLEFRS+DETTQA+AFDGINF QSLKIRRP DY+
Sbjct: 183 QIAGLAQAPGQPILAVQINLDKNFAFLEFRSVDETTQALAFDGINFMNQSLKIRRPSDYK 242
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------------------- 171
P PG + A+ +P GVISTVV DS HK+FIGGLPNYLN+
Sbjct: 243 PLPGSLEQPAIHLP-GVISTVVQDSQHKMFIGGLPNYLNDDQVKELLTSFGPLRAFNLVK 301
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
DQAIAGLNGMQLGDKKLIVQRAS+GAKN I
Sbjct: 302 DSATALSKGYAFAEFADYSLTDQAIAGLNGMQLGDKKLIVQRASIGAKNNPHG----AIM 357
Query: 211 VPGLTQVGQAGPAT 224
+PG+ AGPAT
Sbjct: 358 IPGMAHATGAGPAT 371
>gi|344277364|ref|XP_003410472.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Loxodonta
africana]
Length = 471
Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 145/262 (55%), Positives = 165/262 (62%), Gaps = 49/262 (18%)
Query: 12 AAGQIPANVIIPETTVAAAAA--AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA +P T A VP+ GS +TR+ARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATAFLPTMTPDGLAMIPTPVPMGGSQMTRKARRLYVGNIPFGITEEAMMDFFNI 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L L QA GNP+LA QIN DKNFAFLEFRS+DETTQA A DGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGVLTQAPGNPILAVQINQDKNFAFLEFRSVDETTQATALDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP P +++N + A AGV STVVPDS HK+FI GLP YLN+
Sbjct: 232 YQPLPSMSENLS-AYMAGVASTVVPDSDHKLFIEGLPTYLNDDQVKELLTSFGPLKAFSL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKN---ASGQQA 205
DQA AGLNGMQLGDKKL+V R SVGAKN ++ Q
Sbjct: 291 VKDSATGLSKGYAVCEYVDINDTDQATAGLNGMQLGDKKLLVLRGSVGAKNGTLSTINQV 350
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV QVPGL +QV G TE
Sbjct: 351 PVTPQVPGLRSSQVQMGGHPTE 372
>gi|390341852|ref|XP_792919.3| PREDICTED: splicing factor U2AF 50 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 386
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 155/235 (65%), Gaps = 49/235 (20%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
GS +TRQARRLYVGNIPFGVTED M+EFFN +MH GLAQA G PVLA Q+N DKNFAFL
Sbjct: 55 GSQMTRQARRLYVGNIPFGVTEDAMVEFFNGKMHNVGLAQAPGPPVLAVQVNHDKNFAFL 114
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPH 158
EFRS++ETTQAMAFDGI F+ Q+LKIRRP DYQ PG++ V VP GV+STVV DSP+
Sbjct: 115 EFRSVEETTQAMAFDGILFQNQALKIRRPKDYQAIPGMSATPTVHVP-GVVSTVVQDSPN 173
Query: 159 KIFIGGLPNYLNEDQ--------------------------------------------- 173
KIFIGGLPNYLN+DQ
Sbjct: 174 KIFIGGLPNYLNDDQVKELLSSFGPLKAFNLVKDSATSLSKGYAFCEYVETNLTDLGWET 233
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
AIAGLNGMQLG+KKLIVQRASVGAKNA Q VQI +PGL+ G GP TE
Sbjct: 234 TDKAIAGLNGMQLGEKKLIVQRASVGAKNAMNQGQQVQINIPGLSLPGTTGPNTE 288
>gi|358338608|dbj|GAA57078.1| splicing factor U2AF large subunit [Clonorchis sinensis]
Length = 518
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/249 (53%), Positives = 158/249 (63%), Gaps = 44/249 (17%)
Query: 8 LNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFF 67
+N AAGQIP P + +P GS + RQARRLYVGNIPF TE+ MMEFF
Sbjct: 152 VNVYAAGQIPMPAHAPNAPLTLTTN--IPFAGSAVCRQARRLYVGNIPFTATEENMMEFF 209
Query: 68 NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
N+QM GL QA G+P++A QIN++KNFAFLEFRS+DETTQ +A DGI F Q+LK+RRP
Sbjct: 210 NKQMRAQGLVQAEGSPIIAVQINMEKNFAFLEFRSVDETTQGLALDGILFHNQALKLRRP 269
Query: 128 HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ-------------- 173
DY P PGV++ +V VP GV+STVV DSPHK+F+GGLPNYLNEDQ
Sbjct: 270 RDYAPLPGVSETPSVIVP-GVVSTVVQDSPHKVFVGGLPNYLNEDQVKELLLSFGPLKGF 328
Query: 174 ---------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAP 206
A AGLNGMQLGDKKLIVQRASVGAK+ + AP
Sbjct: 329 NLVKDGSTGLSKGYAFCEYVDPNVTDHACAGLNGMQLGDKKLIVQRASVGAKHNATTAAP 388
Query: 207 VQIQVPGLT 215
+Q+PGLT
Sbjct: 389 ALLQLPGLT 397
>gi|402590758|gb|EJW84688.1| hypothetical protein WUBG_04401 [Wuchereria bancrofti]
Length = 477
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/262 (52%), Positives = 157/262 (59%), Gaps = 56/262 (21%)
Query: 5 NEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMM 64
E AAGQIP N + +AVPVVG ++T Q+RRLYVGNIPFG +ED M+
Sbjct: 133 KEYKELQAAGQIPRNNV----------QSAVPVVGPSVTCQSRRLYVGNIPFGCSEDAML 182
Query: 65 EFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+FFNQQMHL GLAQA GNPVLACQ+NLDKNFAF+EFRSIDETT MAFDGINF GQ LKI
Sbjct: 183 DFFNQQMHLCGLAQAPGNPVLACQMNLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKI 242
Query: 125 RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN-------------- 170
RRP DYQP D + ++S +VPDSPHKIFIGGLP+YLN
Sbjct: 243 RRPRDYQPMSTSYDLGNM-----MVSNIVPDSPHKIFIGGLPSYLNAEQVKELLSSFGQL 297
Query: 171 ---------------------------EDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
DQAIAGLNGMQLGDK L+VQ + A+N Q
Sbjct: 298 KAFNLVTEQSTGVSKGYAFAEYLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANARNNVAQ 357
Query: 204 QAPVQIQVPGLTQVGQAGPATE 225
QIQV G+ AGP TE
Sbjct: 358 NTFPQIQVAGIDLSHGAGPPTE 379
>gi|393909510|gb|EJD75480.1| hypothetical protein LOAG_17389 [Loa loa]
Length = 502
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/255 (53%), Positives = 156/255 (61%), Gaps = 56/255 (21%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIP N + +AVPVVG ++T Q+RRLYVGNIPFG +ED M++FFNQQM
Sbjct: 165 AAGQIPRNNV----------QSAVPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQM 214
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQA GNPVLACQ+NLDKNFAF+EFRSIDETT MAFDGINF GQ LKIRRP DYQ
Sbjct: 215 HLCGLAQAPGNPVLACQMNLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQ 274
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN--------------------- 170
P D + ++S +VPDSPHKIFIGGLP+YLN
Sbjct: 275 PMSTSYDLGNM-----MVSNIVPDSPHKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVT 329
Query: 171 --------------------EDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
DQAIAGLNGMQLGDK L+VQ + A+N Q QIQ
Sbjct: 330 EQSTGVSKGYAFAEYLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANARNNVAQNTFPQIQ 389
Query: 211 VPGLTQVGQAGPATE 225
V G+ AGP TE
Sbjct: 390 VAGIDLSHGAGPPTE 404
>gi|312078073|ref|XP_003141580.1| U2af splicing factor protein 1 [Loa loa]
Length = 460
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 137/255 (53%), Positives = 156/255 (61%), Gaps = 56/255 (21%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIP N + +AVPVVG ++T Q+RRLYVGNIPFG +ED M++FFNQQM
Sbjct: 165 AAGQIPRNNV----------QSAVPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQM 214
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQA GNPVLACQ+NLDKNFAF+EFRSIDETT MAFDGINF GQ LKIRRP DYQ
Sbjct: 215 HLCGLAQAPGNPVLACQMNLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQ 274
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN--------------------- 170
P D + ++S +VPDSPHKIFIGGLP+YLN
Sbjct: 275 PMSTSYDLGNM-----MVSNIVPDSPHKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVT 329
Query: 171 --------------------EDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
DQAIAGLNGMQLGDK L+VQ + A+N Q QIQ
Sbjct: 330 EQSTGVSKGYAFAEYLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANARNNVAQNTFPQIQ 389
Query: 211 VPGLTQVGQAGPATE 225
V G+ AGP TE
Sbjct: 390 VAGIDLSHGAGPPTE 404
>gi|170575889|ref|XP_001893425.1| U2 auxiliary factor 65 kDa subunit [Brugia malayi]
gi|158600599|gb|EDP37742.1| U2 auxiliary factor 65 kDa subunit, putative [Brugia malayi]
Length = 502
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 137/255 (53%), Positives = 156/255 (61%), Gaps = 56/255 (21%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQIP N + +AVPVVG ++T Q+RRLYVGNIPFG +ED M++FFNQQM
Sbjct: 165 AAGQIPRNNV----------QSAVPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQM 214
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQA GNPVLACQ+NLDKNFAF+EFRSIDETT MAFDGINF GQ LKIRRP DYQ
Sbjct: 215 HLCGLAQAPGNPVLACQMNLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQ 274
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN--------------------- 170
P D + ++S +VPDSPHKIFIGGLP+YLN
Sbjct: 275 PMSTSYDLGNM-----MVSNIVPDSPHKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVT 329
Query: 171 --------------------EDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
DQAIAGLNGMQLGDK L+VQ + A+N Q QIQ
Sbjct: 330 EQSTGVSKGYAFAEYLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANARNNVAQNTFPQIQ 389
Query: 211 VPGLTQVGQAGPATE 225
V G+ AGP TE
Sbjct: 390 VAGIDLSHGAGPPTE 404
>gi|395529346|ref|XP_003766777.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Sarcophilus
harrisii]
Length = 462
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/164 (74%), Positives = 137/164 (83%), Gaps = 3/164 (1%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 160 AAGQIPATALLPTMTPDGLAVTPAPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 219
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 220 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 279
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 280 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 322
>gi|226478958|emb|CAX72974.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
Length = 520
Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/250 (52%), Positives = 158/250 (63%), Gaps = 44/250 (17%)
Query: 8 LNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFF 67
+N AAGQ+P V P + VP GS + RQARRLYVGNIPF TE+ MMEFF
Sbjct: 154 VNVYAAGQVPMPVHAPNAPLTLTTN--VPFAGSAVCRQARRLYVGNIPFTATEENMMEFF 211
Query: 68 NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
N+QM GL QA GNP++A QIN++KNFAFLEFRS+DETTQ +A DG+ F+ Q+LK+RRP
Sbjct: 212 NKQMRAQGLIQAEGNPIIAVQINMEKNFAFLEFRSVDETTQGLALDGVLFQNQALKLRRP 271
Query: 128 HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ-------------- 173
DY P PGV++ +V VP GV+STVV DSPHKIF+GGLPNYLNEDQ
Sbjct: 272 RDYAPLPGVSEQPSVIVP-GVVSTVVQDSPHKIFVGGLPNYLNEDQVKELLLSFGPLKGF 330
Query: 174 ---------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAP 206
A AGLNGMQLGDKKLIVQRASVGAK+ +G
Sbjct: 331 NLVKDGSTGLSKGYAFCEYVDSNVTDHACAGLNGMQLGDKKLIVQRASVGAKHTTGVLPQ 390
Query: 207 VQIQVPGLTQ 216
+Q+ GL +
Sbjct: 391 CLLQMSGLEE 400
>gi|340780291|pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
gi|340780292|pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/196 (65%), Positives = 141/196 (71%), Gaps = 42/196 (21%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
ARRLYVGNIPFG+TE+ MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DE
Sbjct: 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 63
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGL 165
TTQAMAFDGI F+GQSLKIRRPHDYQP PG+++N +V VP GV+STVVPDS HK+FIGGL
Sbjct: 64 TTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGL 122
Query: 166 PNYLNE-----------------------------------------DQAIAGLNGMQLG 184
PNYLN+ DQAIAGLNGMQLG
Sbjct: 123 PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 182
Query: 185 DKKLIVQRASVGAKNA 200
DKKL+VQRASVGAKNA
Sbjct: 183 DKKLLVQRASVGAKNA 198
>gi|256074204|ref|XP_002573416.1| splicing factor u2af large subunit [Schistosoma mansoni]
gi|238658595|emb|CAZ29648.1| splicing factor u2af large subunit, putative [Schistosoma mansoni]
Length = 521
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 157/248 (63%), Gaps = 44/248 (17%)
Query: 8 LNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFF 67
+N AAGQ+P V P + VP GS + RQARRLYVGNIPF TE+ MMEFF
Sbjct: 155 VNVYAAGQVPMPVHAPNAPLTLTTN--VPFAGSAVCRQARRLYVGNIPFTATEENMMEFF 212
Query: 68 NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
N+QM GL QA GNP++A QIN++KNFAFLEFRS+DETTQ +A DG+ F+ Q+LK+RRP
Sbjct: 213 NKQMRAQGLIQAEGNPIIAVQINMEKNFAFLEFRSVDETTQGLALDGVLFQNQALKLRRP 272
Query: 128 HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ-------------- 173
DY P PGV++ +V VP GV+STVV DSPHKIF+GGLPNYLNEDQ
Sbjct: 273 RDYAPLPGVSEQPSVIVP-GVVSTVVQDSPHKIFVGGLPNYLNEDQVKELLLSFGPLKGF 331
Query: 174 ---------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAP 206
A AGLNGMQLGDKKLIVQRASVGAK+ +G
Sbjct: 332 NLVKDGSTGLSKGYAFCEYVDANVTDHACAGLNGMQLGDKKLIVQRASVGAKHTTGVLPQ 391
Query: 207 VQIQVPGL 214
+ +PGL
Sbjct: 392 TLLSLPGL 399
>gi|226483519|emb|CAX74060.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
gi|226483521|emb|CAX74061.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
Length = 518
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 157/248 (63%), Gaps = 44/248 (17%)
Query: 8 LNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFF 67
+N AAGQ+P V P + VP GS + RQARRLYVGNIPF TE+ MMEFF
Sbjct: 152 VNVYAAGQVPMPVHAPNAPLTLTTN--VPFAGSAVCRQARRLYVGNIPFTATEENMMEFF 209
Query: 68 NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
N+QM GL QA GNP++A QIN++KNFAFLEFRS+DETTQ +A DG+ F+ Q+LK+RRP
Sbjct: 210 NKQMRAQGLIQAEGNPIIAVQINMEKNFAFLEFRSVDETTQGLALDGVLFQNQALKLRRP 269
Query: 128 HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ-------------- 173
DY P PGV++ +V VP GV+STVV DSPHKIF+GGLPNYLNEDQ
Sbjct: 270 RDYAPLPGVSEQPSVIVP-GVVSTVVQDSPHKIFVGGLPNYLNEDQVKELLLSFGPLKGF 328
Query: 174 ---------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAP 206
A AGLNGMQLGDKKLIVQRASVGAK+ +G
Sbjct: 329 NLVKDGSTGLSKGYAFCEYVDANVTDHACAGLNGMQLGDKKLIVQRASVGAKHTTGVLPQ 388
Query: 207 VQIQVPGL 214
+ +PGL
Sbjct: 389 TLLSLPGL 396
>gi|355727237|gb|AES09128.1| U2 small nuclear RNA auxiliary factor 2 [Mustela putorius furo]
Length = 301
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/164 (73%), Positives = 136/164 (82%), Gaps = 3/164 (1%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 99 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 158
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 159 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 218
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 219 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 261
>gi|426244214|ref|XP_004015921.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Ovis aries]
Length = 471
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/164 (73%), Positives = 135/164 (82%), Gaps = 3/164 (1%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 113 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 172
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 173 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 232
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVP S HK+FIGGLPNYLN+DQ
Sbjct: 233 YQPLPGMSENPSVYVP-GVVSTVVPGSAHKLFIGGLPNYLNDDQ 275
>gi|324503285|gb|ADY41429.1| Splicing factor U2AF 65 kDa subunit [Ascaris suum]
Length = 522
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/262 (51%), Positives = 156/262 (59%), Gaps = 56/262 (21%)
Query: 5 NEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMM 64
E AAGQIP N + +AVPVVG ++T Q+RRLYVGNIPFG +ED M+
Sbjct: 178 KEYKELQAAGQIPRNNV----------QSAVPVVGPSVTCQSRRLYVGNIPFGCSEDAML 227
Query: 65 EFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+FFNQQMHL GLAQA GNPVLACQ+NLDKNFAF+EFRSIDETT MAFDGINF GQ LKI
Sbjct: 228 DFFNQQMHLCGLAQAPGNPVLACQMNLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKI 287
Query: 125 RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN-------------- 170
RRP DYQP D + ++S +V DSP+KIFIGGLP+YLN
Sbjct: 288 RRPRDYQPMSTSYDMGNM-----MVSNIVADSPYKIFIGGLPSYLNAEQVKELLSSFGQL 342
Query: 171 ---------------------------EDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
DQAIAGLNGMQLGDK L+VQ + A+ A
Sbjct: 343 KAFNLVTDVSTGVSKGYAFAEYLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANARAAMST 402
Query: 204 QAPVQIQVPGLTQVGQAGPATE 225
A QIQV G+ AGP TE
Sbjct: 403 TAFPQIQVAGIDLSHGAGPPTE 424
>gi|156404394|ref|XP_001640392.1| predicted protein [Nematostella vectensis]
gi|156227526|gb|EDO48329.1| predicted protein [Nematostella vectensis]
Length = 332
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/219 (59%), Positives = 151/219 (68%), Gaps = 47/219 (21%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
+TRQARRLYVGNIPFGVTE+ M+EFFN +M + L A GNPV+A QIN ++NFAF+E R
Sbjct: 1 MTRQARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQINTEQNFAFIELR 60
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
S++ETTQAMAFDGI +GQ+LKIRRP DYQP PG+++NA+V VP GV+STVVPDSPHKIF
Sbjct: 61 SVEETTQAMAFDGIILQGQALKIRRPKDYQPIPGMSENASVHVP-GVVSTVVPDSPHKIF 119
Query: 162 IGGLPNYLNEDQ-----------------------------------------AIAGLNG 180
IGGLPNYLNEDQ AI GLNG
Sbjct: 120 IGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNG 179
Query: 181 MQLGDKKLIVQRASVGAK-NASGQQA----PVQIQVPGL 214
MQLGDKKLIVQRASVGAK N + QA P Q+Q+PGL
Sbjct: 180 MQLGDKKLIVQRASVGAKQNLNNPQAMNMVPAQLQIPGL 218
>gi|195999450|ref|XP_002109593.1| hypothetical protein TRIADDRAFT_21652 [Trichoplax adhaerens]
gi|190587717|gb|EDV27759.1| hypothetical protein TRIADDRAFT_21652 [Trichoplax adhaerens]
Length = 476
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 157/244 (64%), Gaps = 52/244 (21%)
Query: 22 IPETTVAAAAA-----AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL 76
+P V AAA A P GS ITRQ+RRLYVGNIPFG+TE MM+FFN++M +GL
Sbjct: 124 VPAQGVPAAAGLGIDPTAAPGSGSQITRQSRRLYVGNIPFGITEQAMMDFFNEKMVTTGL 183
Query: 77 AQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
QA G+PVLA QIN DKNFAFLEFRSI+ETT AMAFDGI F+ Q+LKIRRP DYQP G
Sbjct: 184 TQANGDPVLAVQINFDKNFAFLEFRSIEETTNAMAFDGIMFQNQALKIRRPKDYQPPTGD 243
Query: 137 TDNAA-VAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------------ 171
+++A + VP GVISTVVPD+PHK+FIGGLPNYL E
Sbjct: 244 PNSSANIHVP-GVISTVVPDTPHKLFIGGLPNYLTEDQVKELLQSFGELKAFNLVKDSAT 302
Query: 172 -----------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQA----PVQIQ 210
DQAIAGLN MQLG+KKL+VQRASVGAK+ + PV +Q
Sbjct: 303 GLSKGYAFCEYVVVEVTDQAIAGLNNMQLGEKKLVVQRASVGAKHNYSVRCLSGIPVTVQ 362
Query: 211 VPGL 214
VPGL
Sbjct: 363 VPGL 366
>gi|297706019|ref|XP_002829852.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Pongo abelii]
Length = 352
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/215 (60%), Positives = 145/215 (67%), Gaps = 47/215 (21%)
Query: 57 GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 116
G T++ MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI
Sbjct: 71 GKTKEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGII 130
Query: 117 FKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE----- 171
F+GQSLKIRRPHDYQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 131 FQGQSLKIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKE 189
Query: 172 ------------------------------------DQAIAGLNGMQLGDKKLIVQRASV 195
DQAIAGLNGMQLGDKKL+VQRASV
Sbjct: 190 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 249
Query: 196 GAKNASG---QQAPVQIQVPGL--TQVGQAGPATE 225
GAKNA+ Q PV +QVPGL +QV G TE
Sbjct: 250 GAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTE 284
>gi|410054709|ref|XP_003954504.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor U2AF 65 kDa subunit
[Pan troglodytes]
Length = 394
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/209 (60%), Positives = 141/209 (67%), Gaps = 47/209 (22%)
Query: 63 MMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122
MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSL
Sbjct: 88 MMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 147
Query: 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE----------- 171
KIRRPHDYQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 148 KIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG 206
Query: 172 ------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 207 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNAT 266
Query: 202 GQ---QAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 267 LSTINQTPVTLQVPGLMSSQVQMGGHPTE 295
>gi|76779874|gb|AAI06135.1| U2af2 protein [Mus musculus]
Length = 307
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/209 (60%), Positives = 141/209 (67%), Gaps = 47/209 (22%)
Query: 63 MMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122
MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSL
Sbjct: 1 MMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 60
Query: 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE----------- 171
KIRRPHDYQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 61 KIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG 119
Query: 172 ------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNAT 179
Query: 202 GQ---QAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 180 LSTINQTPVTLQVPGLMSSQVQMGGHPTE 208
>gi|13938661|gb|AAH07487.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Mus
musculus]
Length = 306
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/208 (60%), Positives = 140/208 (67%), Gaps = 47/208 (22%)
Query: 64 MEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 123
M+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLK
Sbjct: 1 MDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 60
Query: 124 IRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------ 171
IRRPHDYQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 61 IRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 119
Query: 172 -----------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 120 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATL 179
Query: 203 Q---QAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 180 STINQTPVTLQVPGLMSSQVQMGGHPTE 207
>gi|71996475|ref|NP_001022967.1| Protein UAF-1, isoform a [Caenorhabditis elegans]
gi|6226906|sp|P90978.2|U2AF2_CAEEL RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=U2AF65; AltName:
Full=U2 snRNP auxiliary factor large subunit
gi|3334906|gb|AAC26982.1| splicing factor U2AF65 [Caenorhabditis elegans]
gi|351018334|emb|CCD62278.1| Protein UAF-1, isoform a [Caenorhabditis elegans]
Length = 496
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 152/261 (58%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N AAGQ+P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 153 EYKNMQAAGQVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 202
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 203 FFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 262
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D N+ + V ST+V DS +KIFIGGLPNYL E
Sbjct: 263 RPRDYQPSQNTFDMNSRMPV-----STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 317
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A + +
Sbjct: 318 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTNL 377
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 378 PNSASAIAGIDLSQGAGRATE 398
>gi|71996485|ref|NP_001022969.1| Protein UAF-1, isoform c [Caenorhabditis elegans]
gi|351018336|emb|CCD62280.1| Protein UAF-1, isoform c [Caenorhabditis elegans]
Length = 474
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 152/261 (58%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N AAGQ+P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 131 EYKNMQAAGQVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 180
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 181 FFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 240
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D N+ + V ST+V DS +KIFIGGLPNYL E
Sbjct: 241 RPRDYQPSQNTFDMNSRMPV-----STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 295
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A + +
Sbjct: 296 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTNL 355
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 356 PNSASAIAGIDLSQGAGRATE 376
>gi|71996490|ref|NP_001022970.1| Protein UAF-1, isoform d [Caenorhabditis elegans]
gi|351018337|emb|CCD62281.1| Protein UAF-1, isoform d [Caenorhabditis elegans]
Length = 471
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 152/261 (58%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N AAGQ+P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 128 EYKNMQAAGQVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 177
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 178 FFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 237
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D N+ + V ST+V DS +KIFIGGLPNYL E
Sbjct: 238 RPRDYQPSQNTFDMNSRMPV-----STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 292
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A + +
Sbjct: 293 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTNL 352
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 353 PNSASAIAGIDLSQGAGRATE 373
>gi|341891946|gb|EGT47881.1| hypothetical protein CAEBREN_25972 [Caenorhabditis brenneri]
Length = 491
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 151/261 (57%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N AAGQ+P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 148 EYKNMQAAGQVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 197
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 198 FFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 257
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D N+ + V S++V DS +KIFIGGLPNYL E
Sbjct: 258 RPRDYQPSQNTFDMNSRMPV-----SSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 312
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A +
Sbjct: 313 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHL 372
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 373 PNSASAIAGIDLSQGAGRATE 393
>gi|308477324|ref|XP_003100876.1| CRE-UAF-1 protein [Caenorhabditis remanei]
gi|308264450|gb|EFP08403.1| CRE-UAF-1 protein [Caenorhabditis remanei]
Length = 496
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 151/261 (57%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N A+G +P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 153 EYKNMQASGAVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 202
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 203 FFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 262
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D NA + V S++V DSP+KIFIGGLPNYL E
Sbjct: 263 RPRDYQPSQNTFDMNARMPV-----SSIVVDSPNKIFIGGLPNYLTEDQVKELLCSFGPL 317
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A +
Sbjct: 318 KAFSLNMDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHL 377
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 378 PNSASAIAGIDLSQGAGRATE 398
>gi|195380577|ref|XP_002049047.1| GJ20975 [Drosophila virilis]
gi|194143844|gb|EDW60240.1| GJ20975 [Drosophila virilis]
Length = 428
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/254 (48%), Positives = 151/254 (59%), Gaps = 58/254 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A+ I+P+ +AA +T+TRQARRLYVGNIPF T+++MM FFN+Q+
Sbjct: 72 ASGQI-ASRIVPDAPPTGESAAI-----ATVTRQARRLYVGNIPFSTTDEDMMAFFNEQI 125
Query: 72 H-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
H L+G GN VL CQ NLDKNFAFLEFRS+DE TQA+ FDGI+++GQ+LKIRRPHDY
Sbjct: 126 HRLNGTQGHDGNAVLTCQTNLDKNFAFLEFRSMDEATQAITFDGISYRGQTLKIRRPHDY 185
Query: 131 QPTPGVTDNAAVAVPAGV---------ISTVVPDSPHKIFIGGLPNYLNE---------- 171
P +T V + G IS VVPDSPHKI+IGGLP LNE
Sbjct: 186 HPVASITTAEIVEIAKGATQIHASNLPISPVVPDSPHKIYIGGLPTCLNEEQVKELLVTF 245
Query: 172 -------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNA 200
+QAIAGLNGMQLGD+KL+VQR+ G +N
Sbjct: 246 GQLRGFNLVKDTITGQSKGFAFCEYLDPSITEQAIAGLNGMQLGDRKLVVQRSIAGVRNM 305
Query: 201 SGQQAPVQIQVPGL 214
Q PV +QVPG
Sbjct: 306 VASQLPV-LQVPGF 318
>gi|449669310|ref|XP_004206989.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Hydra
magnipapillata]
Length = 480
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 148/233 (63%), Gaps = 57/233 (24%)
Query: 32 AAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL 91
A A+P G+ +T QARRLY GN+PFG+TED M++FFN +M S +A+ GNPVLACQINL
Sbjct: 146 ATALPQ-GAQMTMQARRLYCGNLPFGITEDLMVDFFNAKMRESDMARQPGNPVLACQINL 204
Query: 92 DKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT---------DNAAV 142
+KNFAFLEFRS++ETT AMAFDGI +GQ+LKIRRP DYQP PG+ ++ A
Sbjct: 205 EKNFAFLEFRSVEETTLAMAFDGIILQGQALKIRRPKDYQPIPGINGMAYPTLFAESQAT 264
Query: 143 AVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------- 173
+P GV+STVV D+ +K+F+GGLPNYLNEDQ
Sbjct: 265 HIP-GVVSTVVSDTINKVFVGGLPNYLNEDQVKELLSTFGELRAFNLVKDSATGLSKGYA 323
Query: 174 ------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGL 214
AIAG+NGMQLGDKKLIVQRASVG+K + Q+ +PG
Sbjct: 324 FCEYVDIGITDVAIAGMNGMQLGDKKLIVQRASVGSKTMTA-----QLNIPGF 371
>gi|1710361|gb|AAB38280.1| splicing factor U2AF65 [Caenorhabditis briggsae]
Length = 488
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 149/261 (57%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N A+G +P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 144 EYKNMQASGAVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 193
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL LAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 194 FFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 253
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D NA + V S++V DS +KIFIGGLPNYL E
Sbjct: 254 RPRDYQPSQNTFDMNARMPV-----SSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 308
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A +
Sbjct: 309 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHL 368
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 369 PNSASAIAGIDLSQGAGRATE 389
>gi|268575804|ref|XP_002642882.1| C. briggsae CBR-UAF-1 protein [Caenorhabditis briggsae]
gi|60415989|sp|P90727.2|U2AF2_CAEBR RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=U2AF65; AltName:
Full=U2 snRNP auxiliary factor large subunit
Length = 488
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 149/261 (57%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N A+G +P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 144 EYKNMQASGAVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 193
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL LAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 194 FFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 253
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D NA + V S++V DS +KIFIGGLPNYL E
Sbjct: 254 RPRDYQPSQNTFDMNARMPV-----SSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 308
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A +
Sbjct: 309 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHL 368
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 369 PNSASAIAGIDLSQGAGRATE 389
>gi|194756144|ref|XP_001960339.1| GF13310 [Drosophila ananassae]
gi|190621637|gb|EDV37161.1| GF13310 [Drosophila ananassae]
Length = 434
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/277 (46%), Positives = 159/277 (57%), Gaps = 69/277 (24%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI + ++ + A +AA A+ +TRQARRLYVGNIPFGVTE+EMM FFNQQ+
Sbjct: 69 ASGQIASRIVPDQQPTAESAAIAM------VTRQARRLYVGNIPFGVTEEEMMGFFNQQL 122
Query: 72 HLSGLA--QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
G + + G VL CQ NL+KNFAFLEFRS+DE TQA+ FDGI F+GQ+LKIRRPHD
Sbjct: 123 IALGSSSLKTDGKAVLTCQTNLEKNFAFLEFRSMDEATQAINFDGIVFRGQTLKIRRPHD 182
Query: 130 YQPTPGVTDN---------------AAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE--- 171
Y P ++ + + P VIST+VPDSP KI+IGGLP LNE
Sbjct: 183 YHPVASISCSEPGFATTTMTSPQIVVSTTGPNHVISTLVPDSPQKIYIGGLPTCLNETQI 242
Query: 172 --------------------------------------DQAIAGLNGMQLGDKKLIVQRA 193
+QAIAGLNGMQLGD+KL+VQR+
Sbjct: 243 KELLLSFGQLKGFNLVKDANTSLSKGFAFFEYVDPLVTEQAIAGLNGMQLGDRKLVVQRS 302
Query: 194 SVGAKNASGQQAPVQIQVPGLTQVGQAGPATECPVPV 230
G +N+ G A V +QVPGLT + P TE P V
Sbjct: 303 IAGGRNSGGVPATV-LQVPGLTAI----PNTESPTEV 334
>gi|195124159|ref|XP_002006561.1| GI21125 [Drosophila mojavensis]
gi|193911629|gb|EDW10496.1| GI21125 [Drosophila mojavensis]
Length = 427
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 154/264 (58%), Gaps = 57/264 (21%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A+ I+P+ +AA +T+TRQARRLYVGNIPF T+++MM FFN+Q+
Sbjct: 72 ASGQI-ASRIVPDAPPTGESAAI-----ATVTRQARRLYVGNIPFSTTDEDMMAFFNEQI 125
Query: 72 H-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ L+G GN VL CQ NLDKNFAFLEFRS+DE TQA+ FDGI ++GQ+LKIRRPHDY
Sbjct: 126 NRLNGTNGVDGNAVLTCQTNLDKNFAFLEFRSMDEATQAINFDGILYRGQTLKIRRPHDY 185
Query: 131 QPTPGVTDNAAVAVPAGV--------ISTVVPDSPHKIFIGGLPNYLNE----------- 171
P V+ + A G IS +VPDSPHKI++GGLP LNE
Sbjct: 186 HPMASVSSSEAADAAKGSATHVNSVPISPMVPDSPHKIYVGGLPTCLNEEQVKELLVTFG 245
Query: 172 ------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
+QAIAGLNGMQLGD+KLIVQR+ G +N
Sbjct: 246 KLRGFNLVKEAVTGQSKGFAFCEYVDPCITEQAIAGLNGMQLGDRKLIVQRSIAGVRNLV 305
Query: 202 GQQAPVQIQVPGLTQVGQAGPATE 225
Q PV +QVPG G ATE
Sbjct: 306 ANQLPV-LQVPGFPVDVSTGKATE 328
>gi|195429288|ref|XP_002062695.1| GK19586 [Drosophila willistoni]
gi|194158780|gb|EDW73681.1| GK19586 [Drosophila willistoni]
Length = 466
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/269 (47%), Positives = 157/269 (58%), Gaps = 61/269 (22%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A+ I+P+ A + A + +TRQARRLYVGNIPFGVT+ EMM FFN Q+
Sbjct: 105 ASGQI-ASRIVPDILPEAESPAL-----AMVTRQARRLYVGNIPFGVTDKEMMNFFNVQL 158
Query: 72 HLSGLAQ-AAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
GL Q G PVL CQ NL+KNFAFLEFRS+ ETTQA+AFDG+NF+GQ+LKIRRPHDY
Sbjct: 159 QSLGLKQFHDGTPVLTCQTNLEKNFAFLEFRSMGETTQAIAFDGVNFRGQTLKIRRPHDY 218
Query: 131 QP--------TPGVTD----NAAVAVP-AGVISTVVPDSPHKIFIGGLPNYLNE------ 171
P T G++D +A VP ++ST+VPDSP KI+IG LP L+E
Sbjct: 219 HPVTSLSSLETVGLSDTIVTSAHTPVPMKDLVSTLVPDSPQKIYIGSLPPCLDEAQIKEL 278
Query: 172 -----------------------------------DQAIAGLNGMQLGDKKLIVQRASVG 196
+QAIAGLNGM LGD++L+VQR+ G
Sbjct: 279 LLSFGRLRGFNLVKDANTGMSKGYAFFEYVDSAVTEQAIAGLNGMLLGDRRLVVQRSIAG 338
Query: 197 AKNASGQQAPVQIQVPGLTQVGQAGPATE 225
+NAS +QVPG V G ATE
Sbjct: 339 GRNASNHSPASVLQVPGFPSVFSTGAATE 367
>gi|340373805|ref|XP_003385430.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Amphimedon
queenslandica]
Length = 529
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 139/232 (59%), Gaps = 47/232 (20%)
Query: 12 AAGQIPANVIIP----ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFF 67
AAGQ+P I P E T S +TRQARRLY+GNIPFG+ E+ M+ FF
Sbjct: 165 AAGQVPTVGIPPPALGEATTPLPIPPPPQPAASQLTRQARRLYIGNIPFGIAEEVMVNFF 224
Query: 68 NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
N++M + L A G PVLA QIN+DKNFAF+EFRS++ETT AMAFDGI +GQSLKIRRP
Sbjct: 225 NEKMLEAKLCSAPGIPVLAVQINMDKNFAFIEFRSVEETTNAMAFDGIVLQGQSLKIRRP 284
Query: 128 HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ-------------- 173
DY P PGV D VP GVISTVVPD PHK+F GGLP YL++DQ
Sbjct: 285 KDYAPIPGV-DIMPKHVP-GVISTVVPDGPHKVFCGGLPTYLSDDQVKELLSSFGDLKAF 342
Query: 174 ---------------------------AIAGLNGMQLGDKKLIVQRASVGAK 198
AI GLNGM LGDKKL+VQRASVGAK
Sbjct: 343 NLVKDSGTSFSKGYCFFEYLDTDVTDGAIQGLNGMALGDKKLVVQRASVGAK 394
>gi|194884971|ref|XP_001976363.1| GG20057 [Drosophila erecta]
gi|190659550|gb|EDV56763.1| GG20057 [Drosophila erecta]
Length = 440
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 158/273 (57%), Gaps = 66/273 (24%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A+ I+P+ +AA + ITRQARRLYVGNIPFGVTE+EMM+FFNQQ+
Sbjct: 76 ASGQI-ASRIVPDAMPTGESAAI-----AMITRQARRLYVGNIPFGVTEEEMMKFFNQQL 129
Query: 72 HLSGLAQAA---GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPH 128
GLA A G VL CQ NL+KNFAFLEFRS+DE TQA+ FDGI F+GQ LKIRRPH
Sbjct: 130 LALGLAGAQYMDGKAVLTCQTNLEKNFAFLEFRSMDEATQALNFDGILFRGQVLKIRRPH 189
Query: 129 DYQPTPGVT-------------DNAAVAVPAGVI--STVVPDSPHKIFIGGLPNYLNEDQ 173
DYQP P + DN P I S++VPDSP+KIF+GGLP L +DQ
Sbjct: 190 DYQPVPSIRVSAMESYRSFRLPDNTVTHPPLATIPLSSIVPDSPNKIFVGGLPTCLGQDQ 249
Query: 174 -----------------------------------------AIAGLNGMQLGDKKLIVQR 192
AIAGL+GMQLG+++L+VQR
Sbjct: 250 IRDLLQSFGELKRLNLVKDTNTCLSKGFAFFEYFDPTVTDHAIAGLHGMQLGNRRLVVQR 309
Query: 193 ASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
+ G K+A Q P+ +QVPG++ + G TE
Sbjct: 310 SIPGGKHAVSGQQPL-VQVPGISTLLDPGSPTE 341
>gi|195489053|ref|XP_002092574.1| GE11595 [Drosophila yakuba]
gi|194178675|gb|EDW92286.1| GE11595 [Drosophila yakuba]
Length = 437
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/273 (45%), Positives = 158/273 (57%), Gaps = 66/273 (24%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A+ I P++ +AA + ITRQARRLYVGNIPFGVTE+EMMEFFNQQ+
Sbjct: 73 ASGQI-ASRIAPDSMPTGESAAI-----AMITRQARRLYVGNIPFGVTEEEMMEFFNQQL 126
Query: 72 HLSGLAQAA---GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPH 128
GL A G VL CQ NL+KNFAFLEFRS+DE TQA+ FDGI F+GQ LKIRRPH
Sbjct: 127 MALGLEGAQYLDGKAVLTCQTNLEKNFAFLEFRSMDEATQALNFDGIIFRGQILKIRRPH 186
Query: 129 DYQPTPGVT-----DNAAVAVPAGV----------ISTVVPDSPHKIFIGGLPNYLNEDQ 173
DYQP P + + +PA +S++VPDSP+KI++GGLP L++DQ
Sbjct: 187 DYQPVPSIRVSNMESYRSFRLPATTTTNPPISTIAVSSIVPDSPNKIYVGGLPTCLDQDQ 246
Query: 174 -----------------------------------------AIAGLNGMQLGDKKLIVQR 192
AIAGL+GMQLGD++L+VQR
Sbjct: 247 IKDLLQSFGELKGLNLVKDINTSLSKGFAFFEYIDPSVTDHAIAGLHGMQLGDRRLVVQR 306
Query: 193 ASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
+ G KN Q P+ +QVPG++ + G TE
Sbjct: 307 SIPGGKNGLSVQQPI-VQVPGISTLLDPGSPTE 338
>gi|18446992|gb|AAL68087.1| AT16577p [Drosophila melanogaster]
Length = 449
Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/278 (43%), Positives = 158/278 (56%), Gaps = 73/278 (26%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI + ++ V +AA+ S ITRQARRLYVGNIPFGVT++EMM+FFN Q+
Sbjct: 82 ASGQIASRIL--SDGVHGGESAAI----SMITRQARRLYVGNIPFGVTDEEMMQFFNHQI 135
Query: 72 HLSGLAQAA-----GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
G + GN VL CQ NL+KNFAFLEFRSIDE +QA+ FDG+ F+GQ+LKIRR
Sbjct: 136 MALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLKIRR 195
Query: 127 PHDYQPTPGVTDNA------------------AVAVPAGVISTVVPDSPHKIFIGGLPNY 168
PHDYQP P ++ +A AV +P ++T+VPDSP+KI++GGLP
Sbjct: 196 PHDYQPVPSISVSAMESYRSFRVPAINVAQQPAVTLP---VTTIVPDSPNKIYVGGLPTC 252
Query: 169 LNEDQ-----------------------------------------AIAGLNGMQLGDKK 187
LN+DQ AIAGL+GM LGD++
Sbjct: 253 LNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAGLHGMLLGDRR 312
Query: 188 LIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
L+VQR+ G KNA P +QVPG++ + G TE
Sbjct: 313 LVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDPGSPTE 350
>gi|24659166|ref|NP_611769.2| large subunit 2 [Drosophila melanogaster]
gi|7291545|gb|AAF46969.1| large subunit 2 [Drosophila melanogaster]
gi|201066057|gb|ACH92438.1| FI08027p [Drosophila melanogaster]
Length = 449
Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/278 (43%), Positives = 158/278 (56%), Gaps = 73/278 (26%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI + ++ V +AA+ S ITRQARRLYVGNIPFGVT++EMM+FFN Q+
Sbjct: 82 ASGQIASRIL--SDGVHGGESAAI----SMITRQARRLYVGNIPFGVTDEEMMQFFNHQI 135
Query: 72 HLSGLAQAA-----GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
G + GN VL CQ NL+KNFAFLEFRSIDE +QA+ FDG+ F+GQ+LKIRR
Sbjct: 136 MALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLKIRR 195
Query: 127 PHDYQPTPGVTDNA------------------AVAVPAGVISTVVPDSPHKIFIGGLPNY 168
PHDYQP P ++ +A AV +P ++T+VPDSP+KI++GGLP
Sbjct: 196 PHDYQPVPSISVSAMESYRSFRVPAINVAQQPAVTLP---VTTIVPDSPNKIYVGGLPTC 252
Query: 169 LNEDQ-----------------------------------------AIAGLNGMQLGDKK 187
LN+DQ AIAGL+GM LGD++
Sbjct: 253 LNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAGLHGMLLGDRR 312
Query: 188 LIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
L+VQR+ G KNA P +QVPG++ + G TE
Sbjct: 313 LVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDPGSPTE 350
>gi|195585954|ref|XP_002082743.1| GD25073 [Drosophila simulans]
gi|194194752|gb|EDX08328.1| GD25073 [Drosophila simulans]
Length = 445
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/276 (44%), Positives = 161/276 (58%), Gaps = 69/276 (25%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI + ++ + A +AA+ S ITRQARRLYVGNIPFGVTE+EMM+FFN ++
Sbjct: 78 ASGQIASRIL--SDGIHAGESAAI----SMITRQARRLYVGNIPFGVTEEEMMQFFNHRI 131
Query: 72 HLSGLAQAA-----GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
G + G VL CQ NL+KNFAFLEFRSIDE TQA+ FDG+ F+GQ+LKIRR
Sbjct: 132 TALGYEAKSSHYMDGKAVLTCQTNLEKNFAFLEFRSIDEATQALNFDGMVFRGQTLKIRR 191
Query: 127 PHDYQPTPGVTDNA------------AVAVPAGV---ISTVVPDSPHKIFIGGLPNYLNE 171
PHDYQP P ++ +A +A P V ++T+VPDSP+KI++GGLP LN+
Sbjct: 192 PHDYQPVPSISFSAMENYRSFRVPDTTIANPPNVTIPVTTIVPDSPNKIYVGGLPTCLNQ 251
Query: 172 DQ-----------------------------------------AIAGLNGMQLGDKKLIV 190
DQ AIAGL+GM LGD++L+V
Sbjct: 252 DQVKELLQSFGELKGLNLVMDGNTSLNKGFAFFEYYDPLVTDHAIAGLHGMLLGDRRLVV 311
Query: 191 QRASVGAKNA-SGQQAPVQIQVPGLTQVGQAGPATE 225
QR+ G KNA G APV +QVPG++ + G TE
Sbjct: 312 QRSIPGGKNAFPGHTAPV-VQVPGISTLLDPGSPTE 346
>gi|195346998|ref|XP_002040041.1| GM15574 [Drosophila sechellia]
gi|194135390|gb|EDW56906.1| GM15574 [Drosophila sechellia]
Length = 445
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 160/276 (57%), Gaps = 69/276 (25%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI + ++ + A +AA+ S ITRQARRLYVGNIPFGVTE+EMM+FFN ++
Sbjct: 78 ASGQIASRIL--SDGIHAGESAAI----SMITRQARRLYVGNIPFGVTEEEMMQFFNHRI 131
Query: 72 HLSGLAQAA-----GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
G + G VL CQ +L+KNFAFLEFRSIDE TQA+ FDG+ ++GQ+LKIRR
Sbjct: 132 MAQGYEAKSSHYMDGKAVLTCQTHLEKNFAFLEFRSIDEATQALNFDGMVYRGQTLKIRR 191
Query: 127 PHDYQPTPGVTDNA-----AVAVPAGVI----------STVVPDSPHKIFIGGLPNYLNE 171
PHDYQP P ++ +A + VPA I +T+VPDSP+KI++GGLP LN+
Sbjct: 192 PHDYQPVPSISFSAMENYRSFRVPATTIANPPNVTIPVTTIVPDSPNKIYVGGLPTCLNQ 251
Query: 172 DQ-----------------------------------------AIAGLNGMQLGDKKLIV 190
DQ AIAGL+GM LGD++L+V
Sbjct: 252 DQVKELLQSFGELKGLNLVMDGNTSLNKGFAFFEYYDPLVTDHAIAGLHGMLLGDRRLVV 311
Query: 191 QRASVGAKNA-SGQQAPVQIQVPGLTQVGQAGPATE 225
QR+ G KNA G PV +QVPG++ + G TE
Sbjct: 312 QRSIPGGKNAFPGHTGPV-VQVPGISTLLDPGSPTE 346
>gi|195057468|ref|XP_001995263.1| GH23055 [Drosophila grimshawi]
gi|193899469|gb|EDV98335.1| GH23055 [Drosophila grimshawi]
Length = 453
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 150/263 (57%), Gaps = 56/263 (21%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A I+P +A+ +T+TRQARRLYVGNIPF T+DEM FFN Q+
Sbjct: 99 ASGQI-ALRIVPNALPTGESASI-----ATVTRQARRLYVGNIPFNTTDDEMRAFFNVQI 152
Query: 72 -HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ G + G VL CQ NL+KNFAFLE RS+DETT A++FDGIN++GQSLKIRRPHDY
Sbjct: 153 QRMCGALENDGKAVLTCQTNLEKNFAFLELRSMDETTLAISFDGINYRGQSLKIRRPHDY 212
Query: 131 QP--TPGVTDNAAVAVPAGV------ISTVVPDSPHKIFIGGLPNYLNED---------- 172
T G A V V I+TVVPD+PHKI+IGGLP LN+D
Sbjct: 213 HAGGTTGSFVGATGYVSGAVVQSNAAIATVVPDTPHKIYIGGLPTCLNDDQVKELLMTFG 272
Query: 173 ------------------------------QAIAGLNGMQLGDKKLIVQRASVGAKNASG 202
QAIAGLNGMQLG++KLIVQR+ G +N
Sbjct: 273 HLRGFNMVKDELGHGKGYAFCEYMDASITEQAIAGLNGMQLGERKLIVQRSLAGVRNLVT 332
Query: 203 QQAPVQIQVPGLTQVGQAGPATE 225
Q PV +QVPG + G ATE
Sbjct: 333 HQLPV-LQVPGFPADVKVGKATE 354
>gi|112490659|pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 117/190 (61%), Gaps = 62/190 (32%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
ARRLYVGNIPFG+TE+ MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DE
Sbjct: 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 63
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGL 165
TTQAMAFDGI F+GQSLKIRRPHDYQP PG HK+FIGGL
Sbjct: 64 TTQAMAFDGIIFQGQSLKIRRPHDYQPLPGA---------------------HKLFIGGL 102
Query: 166 PNYLNE-----------------------------------------DQAIAGLNGMQLG 184
PNYLN+ DQAIAGLNGMQLG
Sbjct: 103 PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162
Query: 185 DKKLIVQRAS 194
DKKL+VQRAS
Sbjct: 163 DKKLLVQRAS 172
>gi|449802099|pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
gi|449802100|pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
gi|449802101|pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
gi|449802102|pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
gi|449802103|pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
gi|449802104|pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
gi|449802105|pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
gi|449802106|pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
gi|449802107|pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
gi|449802108|pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
gi|449802109|pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
gi|449802110|pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
gi|449802113|pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802114|pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802115|pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802116|pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802117|pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
gi|449802118|pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 117/190 (61%), Gaps = 62/190 (32%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
ARRLYVGNIPFG+TE+ MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DE
Sbjct: 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 65
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGL 165
TTQAMAFDGI F+GQSLKIRRPHDYQP PG HK+FIGGL
Sbjct: 66 TTQAMAFDGIIFQGQSLKIRRPHDYQPLPGA---------------------HKLFIGGL 104
Query: 166 PNYLNE-----------------------------------------DQAIAGLNGMQLG 184
PNYLN+ DQAIAGLNGMQLG
Sbjct: 105 PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 164
Query: 185 DKKLIVQRAS 194
DKKL+VQRAS
Sbjct: 165 DKKLLVQRAS 174
>gi|402906865|ref|XP_003916203.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Papio anubis]
Length = 446
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 146/262 (55%), Gaps = 74/262 (28%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLE +++ +S
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLE---------------VSWGNRS-------- 208
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
P + A + P V+STVVPDS HK+FIGGLPNYLN+
Sbjct: 209 ---GPVLCALAMLTFPEWVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 265
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QA 205
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q
Sbjct: 266 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQT 325
Query: 206 PVQIQVPGL--TQVGQAGPATE 225
PV +QVPGL +QV G TE
Sbjct: 326 PVTLQVPGLMSSQVQMGGHPTE 347
>gi|358417046|ref|XP_001256277.3| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Bos taurus]
Length = 330
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/136 (72%), Positives = 110/136 (80%), Gaps = 2/136 (1%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVP 145
YQP PG+++N +V VP
Sbjct: 232 YQPLPGMSENPSVYVP 247
>gi|241166827|ref|XP_002409934.1| splicing factor u2af large subunit, putative [Ixodes scapularis]
gi|215494685|gb|EEC04326.1| splicing factor u2af large subunit, putative [Ixodes scapularis]
Length = 444
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 141/247 (57%), Gaps = 68/247 (27%)
Query: 39 GSTITRQARRLYVGNIPFGVTE--------DEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
GSTITRQARRLYVGNIPFG +E +EMM++FN QMH G +QA GNPVLACQIN
Sbjct: 108 GSTITRQARRLYVGNIPFGCSEASRPLLLREEMMDYFNAQMHACGFSQAPGNPVLACQIN 167
Query: 91 LDKNFAFLEFRSIDE------TTQAMAFDGIN--FKGQSLKIRRPHDYQPTPGVTDNAAV 142
LDKNFAFLE ++D + +D ++ F G L TPG T +
Sbjct: 168 LDKNFAFLEVSALDTDLGTPCCPTFVLYDYLSPPFSGNCLGAG-----NGTPGDT---WL 219
Query: 143 AVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------------------- 171
+GVISTVV DSPHKIFIGGLPNYLNE
Sbjct: 220 GFLSGVISTVVQDSPHKIFIGGLPNYLNEDQVRELLMSFGQLRAFNLVKDSATGLSKGYA 279
Query: 172 ----------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS---GQQAPVQIQVPGLTQVG 218
DQAI GLNGMQLGDKKLIVQRASVGAKN+ + APVQIQVPGL G
Sbjct: 280 FCEYVEVTTTDQAIMGLNGMQLGDKKLIVQRASVGAKNSQMNVSRDAPVQIQVPGLQLQG 339
Query: 219 QAGPATE 225
AGP TE
Sbjct: 340 GAGPPTE 346
>gi|198456623|ref|XP_001360392.2| GA16338 [Drosophila pseudoobscura pseudoobscura]
gi|198135682|gb|EAL24967.2| GA16338 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 143/282 (50%), Gaps = 80/282 (28%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A I T A AA+ +V TRQARRLYVGNIPFGVTED++M FFNQQ
Sbjct: 97 ASGQITAR--IQSDTQPTADTAAIAMV----TRQARRLYVGNIPFGVTEDDIMAFFNQQF 150
Query: 72 HL-----SGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
L G G VL+CQ NLDKNFAF+EFRS+ E TQA FDGI+F+GQ LKIRR
Sbjct: 151 LLLGDNCGGQLCLDGKAVLSCQANLDKNFAFIEFRSMQEATQATTFDGISFRGQVLKIRR 210
Query: 127 PHDYQP-TPGVTDNAAVAVPAGV-------------------------ISTVVPDSPHKI 160
PHDY P A ++P V IS +VPDSPHKI
Sbjct: 211 PHDYHPVGSVGAAAGAGSIPDAVGGCASSAAAKSRSSSAETGSLGSQAISNLVPDSPHKI 270
Query: 161 FIGGLPNYLNE-----------------------------------------DQAIAGLN 179
+IGGLP LNE +Q IA LN
Sbjct: 271 YIGGLPTCLNETQIKELLLSFGQLRGFNLVKDPSTTLSKGYAFFEYVDPLLTEQVIANLN 330
Query: 180 GMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAG 221
GMQLGD++LIVQR+ + A QQ P IQVPGL G
Sbjct: 331 GMQLGDRRLIVQRSIPSGRYAGNQQIP--IQVPGLVATSLTG 370
>gi|195149862|ref|XP_002015874.1| GL11290 [Drosophila persimilis]
gi|194109721|gb|EDW31764.1| GL11290 [Drosophila persimilis]
Length = 487
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 143/282 (50%), Gaps = 80/282 (28%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQI A I T A AA+ +V TRQARRLYVGNIPFGVTED++M FFNQQ
Sbjct: 93 ASGQITAR--IQSDTQPTADTAAIAMV----TRQARRLYVGNIPFGVTEDDIMAFFNQQF 146
Query: 72 HL-----SGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
L G G VL+CQ NLDKNFAF+EFRS+ E TQA FDGI+F+GQ LKIRR
Sbjct: 147 LLLGDDCGGQLCLDGKAVLSCQANLDKNFAFIEFRSMQEATQATTFDGISFRGQVLKIRR 206
Query: 127 PHDYQP-TPGVTDNAAVAVPAGV-------------------------ISTVVPDSPHKI 160
PHDY P A ++P V IS +VPDSPHKI
Sbjct: 207 PHDYHPVGSVGAAAGAGSIPDAVGGCASSAAAKSRSSSADTGSLGSQAISNLVPDSPHKI 266
Query: 161 FIGGLPNYLNE-----------------------------------------DQAIAGLN 179
+IGGLP LNE +Q IA LN
Sbjct: 267 YIGGLPTCLNETQIKELLLSFGQLRGFNLVKDPSTTLSKGYAFFEYVDPLLTEQVIANLN 326
Query: 180 GMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAG 221
GMQLGD++LIVQR+ + A QQ P IQVPGL G
Sbjct: 327 GMQLGDRRLIVQRSIPSGRYAGIQQIP--IQVPGLVATSLTG 366
>gi|344251408|gb|EGW07512.1| Splicing factor U2AF 65 kDa subunit [Cricetulus griseus]
Length = 422
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 111/172 (64%), Gaps = 47/172 (27%)
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
FRS+DETTQAMAFDGI F+GQSLKIRRPHDYQP PG+++N +V VP GV+STVVPDS HK
Sbjct: 25 FRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHK 83
Query: 160 IFIGGLPNYLNE-----------------------------------------DQAIAGL 178
+FIGGLPNYLN+ DQAIAGL
Sbjct: 84 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 143
Query: 179 NGMQLGDKKLIVQRASVGAKNASGQ---QAPVQIQVPGL--TQVGQAGPATE 225
NGMQLGDKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G TE
Sbjct: 144 NGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTE 195
>gi|432095994|gb|ELK26905.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 171
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 108/162 (66%), Gaps = 28/162 (17%)
Query: 12 AAGQIPANVIIPETTVAAAAAAA--VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAG+IPA ++P T A VPV S +TRQARRL VGNIPFG+TE+ M
Sbjct: 8 AAGRIPATALLPARTPDGLAVTPMPVPVAVSNMTRQARRLCVGNIPFGITEEAM------ 61
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
+N DKNFAFLEFRS+DETTQAMA DGI F+GQSLKIRRPHD
Sbjct: 62 -------------------VNRDKNFAFLEFRSVDETTQAMALDGIIFQGQSLKIRRPHD 102
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE 171
YQP P +++N +V +P GV+STVVPDS HK+F+GGLP YL +
Sbjct: 103 YQPLPDMSENPSVYLP-GVVSTVVPDSAHKLFMGGLPYYLKD 143
>gi|388856534|emb|CCF49840.1| related to pre-mRNA splicing factor U2AF large chain [Ustilago
hordei]
Length = 718
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 113/196 (57%), Gaps = 43/196 (21%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQARRLYVGNI E M+ FFN+QM L G P ++ Q+N+DK +AF+EFR
Sbjct: 340 RQARRLYVGNITHSANEPNMVAFFNEQMLKLKLGTEPGEPAVSAQVNVDKGYAFVEFRHP 399
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
+E T AM+FDGI F+GQSLKIRRP DY P V + + VP GVIST VPDSPHKIF+G
Sbjct: 400 EEATNAMSFDGIVFQGQSLKIRRPKDYT-GPDVRPASNIHVP-GVISTNVPDSPHKIFVG 457
Query: 164 GLPNYLNEDQAIA-----------------------------------------GLNGMQ 182
GLP YL +DQ I GLNGM+
Sbjct: 458 GLPTYLTDDQVIELLQAFGELRAFNLVKDTANGASKGFAFCEYVDTALTDLACQGLNGME 517
Query: 183 LGDKKLIVQRASVGAK 198
LGD+ L+VQRASVG++
Sbjct: 518 LGDRNLVVQRASVGSE 533
>gi|443898020|dbj|GAC75358.1| splicing factor U2AF, large subunit [Pseudozyma antarctica T-34]
Length = 699
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 113/197 (57%), Gaps = 43/197 (21%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQARRLYVGNI E M+ FFN+QM L G P ++ Q+N+DK +AF+EFR
Sbjct: 326 RQARRLYVGNITHQANEPSMVAFFNEQMLKLKLGTEPGEPAVSAQVNVDKGYAFVEFRHP 385
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
DE T AM+FDGI F+GQSLKIRRP DY P V +++ VP GVIST VPDSP KIF+G
Sbjct: 386 DEATNAMSFDGIVFQGQSLKIRRPKDYT-GPDVRPPSSIHVP-GVISTNVPDSPFKIFVG 443
Query: 164 GLPNYLNEDQAIA-----------------------------------------GLNGMQ 182
GLP YL +DQ I GLNGM+
Sbjct: 444 GLPTYLTDDQVIELLQAFGELRSFNLVKDPATNASKGFAFCEYVDTALTDLACQGLNGME 503
Query: 183 LGDKKLIVQRASVGAKN 199
LGD+ L+VQRASVG++
Sbjct: 504 LGDRNLVVQRASVGSEK 520
>gi|393236224|gb|EJD43774.1| hypothetical protein AURDEDRAFT_137718 [Auricularia delicata
TFB-10046 SS5]
Length = 389
Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 121/201 (60%), Gaps = 45/201 (22%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQ--AAGNPVLACQINLDKNFAFLE 99
+ RQ+RRLY+G+I +TE+ + +FFNQ+M L Q A+G+PVLA Q+N +KN+AF+E
Sbjct: 24 LARQSRRLYIGSITPEITEENLTKFFNQKMREMNLGQQNASGDPVLAVQVNYEKNYAFVE 83
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
FRS D+ T AMAFDGI F+ L+IRRP DY + +A+ VP GV+ST VPDS HK
Sbjct: 84 FRSADDATAAMAFDGIIFQSGPLRIRRPKDYMGN-EYSAPSAMHVP-GVVSTNVPDSLHK 141
Query: 160 IFIGGLPNYLNEDQ-----------------------------------------AIAGL 178
IF+GGLP YLNE+Q AI GL
Sbjct: 142 IFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENNNGPSKGYAFFEYVDEEVTEVAIQGL 201
Query: 179 NGMQLGDKKLIVQRASVGAKN 199
NGM+LGD+ L VQRASVG+KN
Sbjct: 202 NGMELGDRVLAVQRASVGSKN 222
>gi|384500209|gb|EIE90700.1| hypothetical protein RO3G_15411 [Rhizopus delemar RA 99-880]
Length = 490
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 114/160 (71%), Gaps = 7/160 (4%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
+T T+QARRLYVG IP G+ E + +FFN MH L PV A QIN +K++AF+E
Sbjct: 212 TTATKQARRLYVGQIPPGLEEKPLADFFNATMH--QLQMQDRTPVAAVQINHEKSYAFVE 269
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
F++ ++ T MAFDGI F+GQ LKIRRP DYQP P D ++ +P G++ST VPD+P+K
Sbjct: 270 FQTAEQATACMAFDGIMFQGQQLKIRRPKDYQP-PAEGD-VSMQLP-GLVSTNVPDTPNK 326
Query: 160 IFIGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGAKN 199
IFIGGLP YLN+DQ I L GD+KLIVQRASVGAK+
Sbjct: 327 IFIGGLPVYLNDDQVIELLKS--FGDRKLIVQRASVGAKH 364
>gi|71022561|ref|XP_761510.1| hypothetical protein UM05363.1 [Ustilago maydis 521]
gi|46101379|gb|EAK86612.1| hypothetical protein UM05363.1 [Ustilago maydis 521]
Length = 727
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 113/196 (57%), Gaps = 43/196 (21%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQARRLYVGNI E ++ FFN+QM L G P ++ Q+N+DK +AF+EFR
Sbjct: 350 RQARRLYVGNITHQANEQNIVAFFNEQMLKLKLGTEPGEPAVSAQVNVDKGYAFVEFRHP 409
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
+E T AM+FDGI F+ QSLKIRRP DY P + + + VP GVIST VPDSPHKIF+G
Sbjct: 410 EEATNAMSFDGIVFQAQSLKIRRPKDYT-GPDIRPPSNIHVP-GVISTNVPDSPHKIFVG 467
Query: 164 GLPNYLNEDQAIA-----------------------------------------GLNGMQ 182
GLP YLN+DQ I GLNGM+
Sbjct: 468 GLPTYLNDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDPALTDLACQGLNGME 527
Query: 183 LGDKKLIVQRASVGAK 198
LGD+ L+VQRASVG++
Sbjct: 528 LGDRNLVVQRASVGSE 543
>gi|159163083|pdb|1U2F|A Chain A, Solution Structure Of The First Rna-Binding Domain Of
Hu2af65
Length = 90
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 80/90 (88%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
ARRLYVGNIPFG+TE+ MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DE
Sbjct: 1 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 60
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
TTQAMAFDGI F+GQSLKIRRPHDYQP PG
Sbjct: 61 TTQAMAFDGIIFQGQSLKIRRPHDYQPLPG 90
>gi|343426615|emb|CBQ70144.1| related to pre-mRNA splicing factor U2AF large chain [Sporisorium
reilianum SRZ2]
Length = 710
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 111/197 (56%), Gaps = 43/197 (21%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQARRLYVGNI E ++ FFN+QM L G P ++ Q+N+DK +AF+EFR
Sbjct: 336 RQARRLYVGNITHQTNEHNIVAFFNEQMLKLKLGTEPGEPAVSAQVNVDKGYAFVEFRHP 395
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
DE T AM+FDGI F+ QSLKIRRP DY P V + + VP GVIST VPDSP KIF+G
Sbjct: 396 DEATNAMSFDGIVFQAQSLKIRRPKDYT-GPDVRPPSNIHVP-GVISTNVPDSPFKIFVG 453
Query: 164 GLPNYLNEDQAIA-----------------------------------------GLNGMQ 182
GLP YL +DQ I GLNGM+
Sbjct: 454 GLPTYLTDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFCEYVDTALTDLACQGLNGME 513
Query: 183 LGDKKLIVQRASVGAKN 199
LGD+ L+VQRASVG++
Sbjct: 514 LGDRNLVVQRASVGSEK 530
>gi|392565476|gb|EIW58653.1| hypothetical protein TRAVEDRAFT_37512 [Trametes versicolor
FP-101664 SS1]
Length = 548
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 124/235 (52%), Gaps = 56/235 (23%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFA 96
V ++RQ+RRLY+G+I + E + +FFN +M L A GNPVLA Q N +KN+A
Sbjct: 181 VNPNLSRQSRRLYIGSITPDINEQNLTDFFNSKMKEMNLGTGAPGNPVLAVQCNYEKNYA 240
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDS 156
F+EFRS ++ T AMAFDGI F LKIRRP DY G D A GV+ST VPDS
Sbjct: 241 FVEFRSAEDATAAMAFDGIIFLNGPLKIRRPKDY----GGPDMLANMHVPGVVSTNVPDS 296
Query: 157 PHKIFIGGLPNYLNEDQ-----------------------------------------AI 175
+KIF+GGLP YLNE+Q AI
Sbjct: 297 ANKIFVGGLPTYLNEEQVMELLSSFGELKAFNLVRENGNGPSKGFAFFEYVDPSVTDVAI 356
Query: 176 AGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATECPVPV 230
L+GM+LGDK L+VQRASVGAK P Q +PG+ G A E P P+
Sbjct: 357 PSLSGMELGDKYLVVQRASVGAK-------PGQSPIPGM---GMFDMAPEIPKPI 401
>gi|449689952|ref|XP_004212193.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial [Hydra
magnipapillata]
Length = 210
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 89/111 (80%), Gaps = 4/111 (3%)
Query: 31 AAAAVPVV----GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA 86
+AVP V G+ T QARR+Y+GNIPFG++ED M++FFN +M S +A+ GNPVLA
Sbjct: 89 CGSAVPAVSLPQGAQTTWQARRIYLGNIPFGISEDLMVDFFNAKMRESDIARQPGNPVLA 148
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT 137
CQINL+KNFAFLEFRS++ETT AMAFDGI +GQ+LKIRRP DYQP PG++
Sbjct: 149 CQINLEKNFAFLEFRSVEETTLAMAFDGIMLQGQALKIRRPKDYQPIPGIS 199
>gi|395331854|gb|EJF64234.1| hypothetical protein DICSQDRAFT_144911 [Dichomitus squalens
LYAD-421 SS1]
Length = 587
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 122/233 (52%), Gaps = 52/233 (22%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFA 96
V ++RQ+RRLY+G+I + E + +FFN +M L A GNPVLA Q N +KN+A
Sbjct: 222 VNPNLSRQSRRLYIGSITPDINEQNLTDFFNSKMKEMNLGTGAPGNPVLAVQCNYEKNYA 281
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDS 156
F+EFRS ++ T AMAFDGI F LKIRRP DY + N V GV+ST VPDS
Sbjct: 282 FVEFRSAEDATAAMAFDGIIFLNGPLKIRRPKDYGGPDVIAPNMHV---PGVVSTNVPDS 338
Query: 157 PHKIFIGGLPNYLNEDQ-----------------------------------------AI 175
+KIF+GGLP YLNE+Q AI
Sbjct: 339 ANKIFVGGLPTYLNEEQVMELLSSFGELKAFNLVRENGNGPSKGFAFFEYVDPSVTDVAI 398
Query: 176 AGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATECPV 228
L+GM+LGDK L+VQRASVGAK P Q +PG+ + P PV
Sbjct: 399 QSLSGMELGDKYLVVQRASVGAK-------PGQSPIPGMYDLNPEIPKPILPV 444
>gi|389745686|gb|EIM86867.1| hypothetical protein STEHIDRAFT_57258 [Stereum hirsutum FP-91666
SS1]
Length = 417
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 116/207 (56%), Gaps = 53/207 (25%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFA 96
V ++RQ+RRLY+G+I +TE + +FFN +M + A G PVLA Q N +KN+A
Sbjct: 55 VNPNLSRQSRRLYIGSITPDITEQNLTDFFNSKMIEMNIGTGAPGPPVLAVQCNYEKNYA 114
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY----QPTPGVTDNAAVAVPAGVISTV 152
F+EFRS ++ T AMAFDGI F LKIRRP DY P P + VP GV+ST
Sbjct: 115 FVEFRSAEDATAAMAFDGIIFVNGPLKIRRPKDYGGMEMPAP------PLHVP-GVVSTN 167
Query: 153 VPDSPHKIFIGGLPNYLNEDQ--------------------------------------- 173
VPDSPHKIF+GGLP+YLNE+Q
Sbjct: 168 VPDSPHKIFVGGLPSYLNEEQVMELLKSFGDLKAFNLVRENGNGPSKGFAFFEYVDPEVT 227
Query: 174 --AIAGLNGMQLGDKKLIVQRASVGAK 198
AI L+GM+LGD+ L+VQRASVGAK
Sbjct: 228 DVAIQSLSGMELGDRYLVVQRASVGAK 254
>gi|443924699|gb|ELU43686.1| rRNA primary transcript binding protein [Rhizoctonia solani AG-1
IA]
Length = 678
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 117/199 (58%), Gaps = 43/199 (21%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEF 100
+ RQ+RRLYVGNI + E+ + EFFN++M + G+PV+ QIN +K++AF+EF
Sbjct: 231 LARQSRRLYVGNITYEANENNLQEFFNRKMVEMKIGTGGGGDPVIGVQINHEKSYAFVEF 290
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
RS ++ T AMAFDGI F+ LKIRRP DY + ++ V VP GV+ST VPDS +KI
Sbjct: 291 RSAEDATAAMAFDGIMFQSGPLKIRRPKDYTGS-DLSAPMGVHVP-GVVSTNVPDSINKI 348
Query: 161 FIGGLPNYLNEDQ----------------------------------------AIAGLNG 180
F+GGLP YL+E+Q AI GLNG
Sbjct: 349 FVGGLPTYLDENQVMELLKSFGELKAFNLVRENGNGAFRRDCQVYVDPSVTDIAIQGLNG 408
Query: 181 MQLGDKKLIVQRASVGAKN 199
M+LGD+ L+VQRASVGAK+
Sbjct: 409 MELGDRFLVVQRASVGAKS 427
>gi|302685922|ref|XP_003032641.1| hypothetical protein SCHCODRAFT_75908 [Schizophyllum commune H4-8]
gi|300106335|gb|EFI97738.1| hypothetical protein SCHCODRAFT_75908 [Schizophyllum commune H4-8]
Length = 556
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 117/211 (55%), Gaps = 46/211 (21%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I + E + EFFN +M + GNPVLA Q N +KN+AF+EF
Sbjct: 189 LSRQSRRLYIGSITPEINEHNLAEFFNSKMTEMNIGTGGPGNPVLAVQCNYEKNYAFVEF 248
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
RS D+ T AMAFDGI F LKIRRP DY + V + VP G+IST VPDS +KI
Sbjct: 249 RSADDATAAMAFDGIIFLNGPLKIRRPKDYDIS--VASAPMIHVP-GIISTNVPDSANKI 305
Query: 161 FIGGLPNYLNEDQ------------------------------------------AIAGL 178
F+GGLP YLNE+Q AI L
Sbjct: 306 FVGGLPAYLNEEQVQELLTSFGELKAFNLVRETGTGASKQGYAFFEYVDPNVTDVAIQSL 365
Query: 179 NGMQLGDKKLIVQRASVGAKNASGQQAPVQI 209
NGM+LGD+ L+VQRASVGAK+ + P ++
Sbjct: 366 NGMELGDRFLVVQRASVGAKDGTIPNLPAEL 396
>gi|409040470|gb|EKM49957.1| hypothetical protein PHACADRAFT_264412 [Phanerochaete carnosa
HHB-10118-sp]
Length = 575
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 127/237 (53%), Gaps = 63/237 (26%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFA 96
V ++RQ+RRLY+G+I + E + +FFN++M + A GNPVLA Q N +KN+A
Sbjct: 213 VNPNLSRQSRRLYIGSITPEINEQNLADFFNEKMKEMSIGTGAPGNPVLAVQCNYEKNYA 272
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA--VAVPAGVISTVVP 154
F+EFRS ++ T AMAFDGI F LKIRRP DY G ++N A + VP GV+ST VP
Sbjct: 273 FVEFRSAEDATAAMAFDGIIFLSGPLKIRRPKDY----GGSENLAPSMHVP-GVVSTNVP 327
Query: 155 DSPHKIFIGGLPNYLNEDQ----------------------------------------- 173
DS +K+F+GGLP YLNE+Q
Sbjct: 328 DSINKVFVGGLPPYLNEEQVMELLTSFGDLKAFNLVRENGNGPSKGFAFFEYVDPAVTDV 387
Query: 174 AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATECPVPV 230
AI LN M+LGDK L+VQRASVGAKN Q P Q P TE P P+
Sbjct: 388 AIQSLNEMELGDKYLVVQRASVGAKNG---QIPPQALYP-----------TEIPKPI 430
>gi|432090458|gb|ELK23883.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 423
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/102 (73%), Positives = 83/102 (81%), Gaps = 8/102 (7%)
Query: 63 MMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122
MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMA GQSL
Sbjct: 1 MMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-------GQSL 53
Query: 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
KIRRPHDYQP PG+++N +V VP GV+STVVPDS HK+FIGG
Sbjct: 54 KIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGG 94
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 54/96 (56%), Gaps = 41/96 (42%)
Query: 147 GVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------------------- 173
GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 251 GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 310
Query: 174 --------AIAGLNGMQLGDKKLIVQRASVGAKNAS 201
AIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 311 VDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNAT 346
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 32/46 (69%), Gaps = 5/46 (10%)
Query: 185 DKKLIVQRASVGAKNASGQ---QAPVQIQVPGL--TQVGQAGPATE 225
DKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G TE
Sbjct: 167 DKKLLVQRASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTE 212
>gi|299745153|ref|XP_001831503.2| rRNA primary transcript binding protein [Coprinopsis cinerea
okayama7#130]
gi|298406457|gb|EAU90350.2| rRNA primary transcript binding protein [Coprinopsis cinerea
okayama7#130]
Length = 550
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 115/203 (56%), Gaps = 44/203 (21%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFA 96
+ ++RQ+RRLY+G+I V E + EFFN++M + + GNPVLA Q N +KN+A
Sbjct: 187 INPNLSRQSRRLYIGSITPDVNEQNLAEFFNKKMAEMNIGTGSTGNPVLAVQCNYEKNYA 246
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDS 156
F+EFRS D+ T AMAFDGI F LKIRRP DY VT + + VP G +ST VPDS
Sbjct: 247 FVEFRSADDATAAMAFDGIIFINGPLKIRRPKDYGGEV-VTGSPGIHVP-GAVSTNVPDS 304
Query: 157 PHKIFIGGLPNYLNEDQ-----------------------------------------AI 175
+K+F+GGLP YLNE+Q AI
Sbjct: 305 INKVFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGNGPSKGFAFFEYVDSSVTDVAI 364
Query: 176 AGLNGMQLGDKKLIVQRASVGAK 198
LNGM+LGD+ L+VQRASVGAK
Sbjct: 365 QSLNGMELGDRYLVVQRASVGAK 387
>gi|336368252|gb|EGN96595.1| hypothetical protein SERLA73DRAFT_93106 [Serpula lacrymans var.
lacrymans S7.3]
Length = 396
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 116/201 (57%), Gaps = 49/201 (24%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I V E + +FFN +M +S A GNPVLA Q N +KN+AF+EF
Sbjct: 47 LSRQSRRLYIGSITPDVNEQNLADFFNSKMIEMSIGTGAPGNPVLAVQCNYEKNYAFVEF 106
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA--VAVPAGVISTVVPDSPH 158
RS ++ T AMAFDGI F LKIRRP DY G D +A V VP GV+ST VPDS +
Sbjct: 107 RSAEDATAAMAFDGIIFINGPLKIRRPKDY----GGVDMSAPSVHVP-GVVSTNVPDSIN 161
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------------AIAG 177
K+F+GGLP YLNE+Q AI
Sbjct: 162 KVFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGNGPSKGFAFFEYVDISVTDVAIQS 221
Query: 178 LNGMQLGDKKLIVQRASVGAK 198
LNGM+LGD+ L+VQRASVGAK
Sbjct: 222 LNGMELGDRYLVVQRASVGAK 242
>gi|336381013|gb|EGO22165.1| hypothetical protein SERLADRAFT_371639 [Serpula lacrymans var.
lacrymans S7.9]
Length = 381
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 116/201 (57%), Gaps = 49/201 (24%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I V E + +FFN +M +S A GNPVLA Q N +KN+AF+EF
Sbjct: 16 LSRQSRRLYIGSITPDVNEQNLADFFNSKMIEMSIGTGAPGNPVLAVQCNYEKNYAFVEF 75
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA--VAVPAGVISTVVPDSPH 158
RS ++ T AMAFDGI F LKIRRP DY G D +A V VP GV+ST VPDS +
Sbjct: 76 RSAEDATAAMAFDGIIFINGPLKIRRPKDY----GGVDMSAPSVHVP-GVVSTNVPDSIN 130
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------------AIAG 177
K+F+GGLP YLNE+Q AI
Sbjct: 131 KVFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGNGPSKGFAFFEYVDISVTDVAIQS 190
Query: 178 LNGMQLGDKKLIVQRASVGAK 198
LNGM+LGD+ L+VQRASVGAK
Sbjct: 191 LNGMELGDRYLVVQRASVGAK 211
>gi|330803435|ref|XP_003289712.1| hypothetical protein DICPUDRAFT_56283 [Dictyostelium purpureum]
gi|325080222|gb|EGC33787.1| hypothetical protein DICPUDRAFT_56283 [Dictyostelium purpureum]
Length = 501
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 111/199 (55%), Gaps = 44/199 (22%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+Q+RR+YVGNIP G+T+ E++EFFN + + L G PV+ CQIN K FAF+EFR+
Sbjct: 158 KQSRRIYVGNIPPGITDSELIEFFNAAVLAANLNVKPGPPVVFCQINAPKCFAFIEFRTP 217
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
+E T AM FDGI K +LKIRRP DYQ + T+ +A+ ++ T VPDS HKIF+G
Sbjct: 218 EEATNAMRFDGITLKNYTLKIRRPKDYQQSNDPTNTSALPT---IVPTNVPDSEHKIFVG 274
Query: 164 GLPNYLNE-----------------------------------------DQAIAGLNGMQ 182
GLP+ LNE DQA A LNG+
Sbjct: 275 GLPSNLNEEQVKTLLSAYGKLKAFNLVKDTNTGISKGYAFCEYLDPDVTDQACASLNGIS 334
Query: 183 LGDKKLIVQRASVGAKNAS 201
L DK LIVQRAS+ A+ S
Sbjct: 335 LADKNLIVQRASIVAQTLS 353
>gi|328862941|gb|EGG12041.1| hypothetical protein MELLADRAFT_41759 [Melampsora larici-populina
98AG31]
Length = 397
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 112/209 (53%), Gaps = 57/209 (27%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG----------NPVLACQIN 90
+ RQARRLYVGNI E + EFFN +M GL G NPV+A Q+N
Sbjct: 28 SFARQARRLYVGNILHTANEMNVAEFFNAKMKELGLLVRNGEDGSMISISENPVVAVQVN 87
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+KN+AF+EFR+ +E T M+FDGI F+ Q+LKIRRP DY T + N +P GV+S
Sbjct: 88 HEKNYAFVEFRNAEEATHGMSFDGIIFQNQALKIRRPKDYTGTEHTSTN---HIP-GVVS 143
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
T VPDSP+KIFIGGLP+YL +DQ
Sbjct: 144 TNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGQVSKGFAFCEYVD 203
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVG 196
A GLNGM+LGD+ L+VQRA +G
Sbjct: 204 SDLTDIACQGLNGMELGDRYLVVQRAQIG 232
>gi|390596686|gb|EIN06087.1| hypothetical protein PUNSTDRAFT_145447 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 602
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 115/200 (57%), Gaps = 47/200 (23%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I +TE + +FFN +M +S GNPVLA Q N +KN+AF+EF
Sbjct: 239 LSRQSRRLYIGSITPEITEQNLADFFNSKMIEMSIGTGGPGNPVLAVQCNYEKNYAFVEF 298
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDY-QPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
RS ++ T AMAFDGI F LKIRRP DY P P A + VP GV+ST VPDS +K
Sbjct: 299 RSAEDATAAMAFDGIIFLNGPLKIRRPKDYGGPDPM---GAGLHVP-GVVSTNVPDSINK 354
Query: 160 IFIGGLPNYLNEDQ-----------------------------------------AIAGL 178
+F+GGLP YLNE+Q AI L
Sbjct: 355 VFVGGLPAYLNEEQVMELLTSFGELKAFNLVRENGNGPSKGFAFFEYVDESVTDVAIQAL 414
Query: 179 NGMQLGDKKLIVQRASVGAK 198
NGM+LGD+ L+VQRASVGAK
Sbjct: 415 NGMELGDRYLVVQRASVGAK 434
>gi|403413555|emb|CCM00255.1| predicted protein [Fibroporia radiculosa]
Length = 582
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 124/233 (53%), Gaps = 62/233 (26%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I + E + +FFN +M + GNPVLA Q N +KN+AF+EF
Sbjct: 222 LSRQSRRLYIGSITPDINEQNLADFFNSKMKEMSIGTGGPGNPVLAVQCNYEKNYAFVEF 281
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA--VAVPAGVISTVVPDSPH 158
RS ++ T AMAFDGI F LKIRRP DY G D+ A + VP GV+ST VPDS +
Sbjct: 282 RSAEDATAAMAFDGIIFINGPLKIRRPKDY----GGMDSIAPSMHVP-GVVSTNVPDSIN 336
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------------AIAG 177
KIF+GGLP YLNE+Q AI
Sbjct: 337 KIFVGGLPTYLNEEQVMELLKSFGDLKAFNLVRENGNGPSKGFAFFEYVDPGVTDVAIQS 396
Query: 178 LNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATECPVPV 230
L+GM+LGDK L+VQRASVGAK P Q +PGL E P P+
Sbjct: 397 LSGMELGDKFLVVQRASVGAK-------PGQPPIPGLYD------QVEIPRPI 436
>gi|66808005|ref|XP_637725.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60466159|gb|EAL64222.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 671
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 112/196 (57%), Gaps = 42/196 (21%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+Q+RR+YVGNIP G+++ E+MEFFN + + L G PV+ CQIN K FAF+EFRS
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFCQINAPKCFAFIEFRSP 324
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
+E T AM FDGI+ K +LKIRRP DYQ T T A +P+ ++ T VPDS +KI++G
Sbjct: 325 EEATNAMRFDGISLKNFTLKIRRPKDYQSTSDNTGGNASLLPS-IVPTNVPDSENKIYVG 383
Query: 164 GLPNYLNEDQ-----------------------------------------AIAGLNGMQ 182
GLP+ L+E+Q A + LNG+
Sbjct: 384 GLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSKLNGIP 443
Query: 183 LGDKKLIVQRASVGAK 198
L DK L+VQRAS+G+K
Sbjct: 444 LADKTLVVQRASIGSK 459
>gi|392589921|gb|EIW79251.1| hypothetical protein CONPUDRAFT_83522 [Coniophora puteana
RWD-64-598 SS2]
Length = 411
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 111/199 (55%), Gaps = 45/199 (22%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I V E + +FFN +M +S GNPVLA Q N +KN+AF+EF
Sbjct: 47 LSRQSRRLYIGSITPDVNEQNLADFFNGKMIEMSIGTGGPGNPVLAVQCNYEKNYAFVEF 106
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
RS ++ T AMAFDGI F LKIRRP DY + N V GV+ST VPDS HKI
Sbjct: 107 RSAEDATAAMAFDGIIFINGPLKIRRPKDYGGDAIMAPNFHV---PGVVSTNVPDSIHKI 163
Query: 161 FIGGLPNYLNEDQ-----------------------------------------AIAGLN 179
F+GGLP YLNE+Q AI LN
Sbjct: 164 FVGGLPPYLNEEQVMELLKSFGELKAFNLVRENGNGPSKGFAFFEYVDSSVTDVAIQSLN 223
Query: 180 GMQLGDKKLIVQRASVGAK 198
GM+LGD+ L+VQRASVGAK
Sbjct: 224 GMELGDRYLVVQRASVGAK 242
>gi|47217926|emb|CAG02209.1| unnamed protein product [Tetraodon nigroviridis]
Length = 600
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 115/222 (51%), Gaps = 59/222 (26%)
Query: 12 AAGQIPANVIIPETTVAAAAAAA--VPVVGSTITRQARRLYVGNIPFGVTE--------- 60
AAGQIP ++ A AA VPV GS +TRQARRLYVGNIPFG+TE
Sbjct: 132 AAGQIPTMALLATAASAGVVAAPTPVPVAGSQMTRQARRLYVGNIPFGLTEALRRLCSPQ 191
Query: 61 DEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR-------------SIDETT 107
+ M EFFN QM L+GL+QA NPVLA QIN DKNFAFLE R + +
Sbjct: 192 ESMAEFFNAQMRLAGLSQAPSNPVLAVQINQDKNFAFLEVRPGFSAAAALPAAAAAADVC 251
Query: 108 QAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA--------------------- 146
++ G + G L+ R P G D A +PA
Sbjct: 252 VSVPLGGRDHAGHGLRRHR----VPGSGSEDPTASRLPASARHLGAAGVPRPRFLRAAAR 307
Query: 147 ---------GVISTVVPDSPHKIFIGGLPNYLNEDQ-AIAGL 178
GV+STVVPDSPHK+FIGGLPNYLN+DQ A AGL
Sbjct: 308 HAARVGRRPGVVSTVVPDSPHKLFIGGLPNYLNDDQVAAAGL 349
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 46/57 (80%), Gaps = 3/57 (5%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQAPVQIQVPGLTQVGQAGPATE 225
DQA+AGLNGMQLGDKKLIVQRASVGAKNA + +APV +QVPGL ++ +G TE
Sbjct: 446 DQAVAGLNGMQLGDKKLIVQRASVGAKNANPSAAAEAPVTLQVPGLQRLQTSGVPTE 502
>gi|170088030|ref|XP_001875238.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650438|gb|EDR14679.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 370
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 114/203 (56%), Gaps = 53/203 (26%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I V E + +FFN +M +S GNPVLA Q N +KN+AF+EF
Sbjct: 24 LSRQSRRLYIGSITPEVNEQNLADFFNSKMIEMSIGTGGPGNPVLAVQCNYEKNYAFVEF 83
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQ----PTPGVTDNAAVAVPAGVISTVVPDS 156
RS ++ T AMAFDGI F LKIRRP DY +PG V VP GV+ST VPDS
Sbjct: 84 RSAEDATAAMAFDGIIFINGPLKIRRPKDYGGMEIASPG------VHVP-GVVSTNVPDS 136
Query: 157 PHKIFIGGLPNYLNEDQ-----------------------------------------AI 175
+KIF+GGLP YLNE+Q AI
Sbjct: 137 INKIFVGGLPTYLNEEQVMELLKSFGDLKAFNLVRENGNGPSKGFAFFEYVDVGVTDVAI 196
Query: 176 AGLNGMQLGDKKLIVQRASVGAK 198
LNGM+LGD+ L+VQRASVGAK
Sbjct: 197 QSLNGMELGDRYLVVQRASVGAK 219
>gi|409081516|gb|EKM81875.1| hypothetical protein AGABI1DRAFT_70425 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 375
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 112/199 (56%), Gaps = 45/199 (22%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA-AGNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I V E + +FFN +M + GNPVLA Q N +KN+AF+EF
Sbjct: 16 LSRQSRRLYIGSITQEVNEQNLADFFNAKMAEMNIGTGITGNPVLAVQCNYEKNYAFVEF 75
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
RS ++ T AMAFDGI F LKIRRP DY V+ V VP GV+ST VPDS +K+
Sbjct: 76 RSAEDATAAMAFDGIIFINGPLKIRRPKDYGGDTIVS--PGVHVP-GVVSTNVPDSINKV 132
Query: 161 FIGGLPNYLNEDQ-----------------------------------------AIAGLN 179
F+GGLP YLNE+Q AI LN
Sbjct: 133 FVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGTGTSKGFAFFEYVDQAVTDVAIQSLN 192
Query: 180 GMQLGDKKLIVQRASVGAK 198
GM+LGD+ L+VQRASVGAK
Sbjct: 193 GMELGDRYLVVQRASVGAK 211
>gi|449547880|gb|EMD38847.1| hypothetical protein CERSUDRAFT_81656 [Ceriporiopsis subvermispora
B]
Length = 476
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 114/201 (56%), Gaps = 49/201 (24%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I + E + EFFN +M + A GNPVLA Q N +KN+AF+EF
Sbjct: 115 LSRQSRRLYIGSITPDINEQNLAEFFNGKMKEMDIGTGAPGNPVLAVQCNYEKNYAFVEF 174
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA--VAVPAGVISTVVPDSPH 158
RS ++ T AMAFDGI F LKIRRP DY G D A + VP GV+ST VPDS +
Sbjct: 175 RSAEDATAAMAFDGIIFLNGPLKIRRPKDY----GGPDVLAPMMHVP-GVVSTNVPDSAN 229
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------------AIAG 177
K+F+GGLP YLNE+Q AI
Sbjct: 230 KVFVGGLPMYLNEEQVMELLKSFGELKAFNLVRENGNGPSKGFAFFEYVDPSVTDVAIQS 289
Query: 178 LNGMQLGDKKLIVQRASVGAK 198
L+GM+LGDK L+VQRASVGAK
Sbjct: 290 LSGMELGDKYLVVQRASVGAK 310
>gi|328865493|gb|EGG13879.1| RapGAP/RanGAP domain-containing protein [Dictyostelium fasciculatum]
Length = 3032
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 83/201 (41%), Positives = 110/201 (54%), Gaps = 43/201 (21%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL--AQAAGNPVLACQINLDKNFAFLEFR 101
+Q+RRLY+GNIP +T++ +++FFN + + L + G VL+CQIN KNFAFLEFR
Sbjct: 2573 KQSRRLYIGNIPPNITDNTLIDFFNTAITAANLHLSSKTGPVVLSCQINSAKNFAFLEFR 2632
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
S +E T AM DGI+ SLKIRRP DYQP + + V ++ST VPDS +KIF
Sbjct: 2633 SAEEATNAMGLDGISLFTFSLKIRRPTDYQPPANESSMPSAPVSMSIVSTNVPDSENKIF 2692
Query: 162 IGGLPNYLNEDQ-----------------------------------------AIAGLNG 180
IGG+P LNE+Q I GLNG
Sbjct: 2693 IGGIPTTLNEEQIKSMLLAFGRLKAFNLVKDPKTGSSKGYAFCEYYETEETNDCINGLNG 2752
Query: 181 MQLGDKKLIVQRASVGAKNAS 201
+ G+K L+VQR+SVG K+ S
Sbjct: 2753 TKFGEKSLVVQRSSVGTKDPS 2773
>gi|331243454|ref|XP_003334370.1| splicing factor U2AF subunit [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 600
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 115/217 (52%), Gaps = 58/217 (26%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----------QAAGNPVLACQIN 90
+ RQARRLYVGNI E + EFFN +M GL + NPV+A Q+N
Sbjct: 218 SFARQARRLYVGNILHTANEMNVAEFFNAKMKELGLLARNNEDGMAISISENPVVAVQVN 277
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+KN+AF+EFR+ +E T M+FDGI F+ Q+LKIRRP DY D+A GV+S
Sbjct: 278 HEKNYAFVEFRNAEEATHGMSFDGIIFQNQALKIRRPKDYTG----PDHAGPTHIPGVVS 333
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
T VPDSP+KIFIGGLP+YL +DQ
Sbjct: 334 TNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVSKGFAFCEYVD 393
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
A GLNGM+LGD+ L+VQRA +G +NA ++
Sbjct: 394 PDLTDIACQGLNGMELGDRYLVVQRAQIG-QNAKKEK 429
>gi|426196755|gb|EKV46683.1| hypothetical protein AGABI2DRAFT_206147 [Agaricus bisporus var.
bisporus H97]
Length = 558
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 112/199 (56%), Gaps = 45/199 (22%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA-AGNPVLACQINLDKNFAFLEF 100
++RQ+RRLY+G+I V E + +FFN +M + GNPVLA Q N +KN+AF+EF
Sbjct: 199 LSRQSRRLYIGSITQEVNEQNLADFFNAKMAEMNIGTGITGNPVLAVQCNYEKNYAFVEF 258
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
RS ++ T AMAFDGI F LKIRRP DY V+ V VP GV+ST VPDS +K+
Sbjct: 259 RSAEDATAAMAFDGIIFINGPLKIRRPKDYGGDTIVS--PGVHVP-GVVSTNVPDSINKV 315
Query: 161 FIGGLPNYLNEDQ-----------------------------------------AIAGLN 179
F+GGLP YLNE+Q AI LN
Sbjct: 316 FVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGTGTSKGFAFFEYVDQAVTDVAIQSLN 375
Query: 180 GMQLGDKKLIVQRASVGAK 198
GM+LGD+ L+VQRASVGAK
Sbjct: 376 GMELGDRYLVVQRASVGAK 394
>gi|403175591|ref|XP_003888994.1| hypothetical protein PGTG_22302 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171670|gb|EHS64431.1| hypothetical protein PGTG_22302 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 713
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 117/229 (51%), Gaps = 58/229 (25%)
Query: 22 IPETTVAAAAAAAVPVVGS-TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA--- 77
+P A + PV + + RQARRLYVGNI E + EFFN +M GL
Sbjct: 311 LPPIHFKPAQGQSGPVAQTQSFARQARRLYVGNILHTANEMNVAEFFNAKMKELGLLARN 370
Query: 78 -------QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ NPV+A Q+N +KN+AF+EFR+ +E T M+FDGI F+ Q+LKIRRP DY
Sbjct: 371 NEDGMAISISENPVVAVQVNHEKNYAFVEFRNAEEATHGMSFDGIIFQNQALKIRRPKDY 430
Query: 131 QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------- 173
D+A GV+ST VPDSP+KIFIGGLP+YL +DQ
Sbjct: 431 T----GPDHAGPTHIPGVVSTNVPDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLV 486
Query: 174 --------------------------AIAGLNGMQLGDKKLIVQRASVG 196
A GLNGM+LGD+ L+VQRA +G
Sbjct: 487 KDTSSGGHVSKGFAFCEYVDPDLTDIACQGLNGMELGDRYLVVQRAQIG 535
>gi|358059688|dbj|GAA94557.1| hypothetical protein E5Q_01209 [Mixia osmundae IAM 14324]
Length = 564
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 135/263 (51%), Gaps = 69/263 (26%)
Query: 27 VAAAAAAAVPVVGS----TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----- 77
++ A +AA P+ G + RQ RRLYVGNI E + EFFN +M +GL+
Sbjct: 205 MSGAGSAAAPMGGVQPIISFARQQRRLYVGNIMPTADEQNVTEFFNAKMRENGLSLDDKK 264
Query: 78 ---QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
Q A +PV++ Q+N +K++AF+EFRS +E + AM+FDGI F+ Q LKIRRP DY
Sbjct: 265 VDVQTA-DPVVSVQVNHEKSYAFVEFRSPEEASSAMSFDGIVFQDQQLKIRRPKDY---- 319
Query: 135 GVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------- 173
D + GVIS+ VPD+P+K+F+GGLP+YL+++Q
Sbjct: 320 -TGDESGGTHLPGVISSNVPDTPNKVFVGGLPSYLDDEQVLELLSSFGELRSFNLVKEGP 378
Query: 174 --------------------AIAGLNGMQLGDKKLIVQRASVGA---KNASGQQAPVQIQ 210
A AGLNGM++GD+ L+VQRA VGA K+ G
Sbjct: 379 QNASKGFAFCEYADPNVTDAACAGLNGMEIGDRYLVVQRAQVGANVYKHPGGYGGSNPAL 438
Query: 211 VPGLTQVG-------QAGPATEC 226
P L +V + PAT C
Sbjct: 439 PPALARVAPTIFGQDETAPATRC 461
>gi|281207514|gb|EFA81697.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 682
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 108/206 (52%), Gaps = 45/206 (21%)
Query: 34 AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK 93
+V + + +Q+RRLYVGNIP VTE +++EFFN + + L G PVL CQI K
Sbjct: 286 SVQSASAALAKQSRRLYVGNIPPNVTEAQIVEFFNAAIIAAALTTKPGQPVLLCQITTGK 345
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
+FAF+EFRS +E T M DGI+ G SLKIRRP DYQ N + ++ST V
Sbjct: 346 SFAFIEFRSSEEATLGMGLDGISLSGYSLKIRRPKDYQ----SGSNEPMPTGLSIVSTNV 401
Query: 154 PDSPHKIFIGGLPNYLNE-----------------------------------------D 172
PDS +KIF+GGLP LNE D
Sbjct: 402 PDSENKIFLGGLPPTLNEEQIKSMLSAIGRLKAFNLVKDTKTGISKGFAFCEFLDPENTD 461
Query: 173 QAIAGLNGMQLGDKKLIVQRASVGAK 198
+A A LNG + GDK L+VQ+AS+G +
Sbjct: 462 KACAELNGTKFGDKSLLVQKASLGKE 487
>gi|114794658|pdb|2HZC|A Chain A, Crystal Structure Of The N-terminal Rrm Of The U2af Large
Subunit
Length = 87
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 73/82 (89%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
ARRLYVGNIPFG+TE+ MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DE
Sbjct: 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 65
Query: 106 TTQAMAFDGINFKGQSLKIRRP 127
TTQAMAFDGI F+GQSLKIRRP
Sbjct: 66 TTQAMAFDGIIFQGQSLKIRRP 87
>gi|440792998|gb|ELR14199.1| U2 snRNP auxilliary factor, large subunit, splicing factor
subfamily protein [Acanthamoeba castellanii str. Neff]
Length = 462
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 108/200 (54%), Gaps = 62/200 (31%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
I RQARRLYVG+IP GV++ + PV++ Q+N DK+F+F+EF
Sbjct: 170 INRQARRLYVGSIPPGVSDPDH------------------RPVVSSQLNPDKSFSFIEFS 211
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY--QPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
+IDE T MA DGI G +LK+RRP DY PT + + +P G++ST VPDSP+K
Sbjct: 212 TIDEATAGMALDGITMNGMTLKVRRPKDYVSPPTAQAPASGGIHIP-GIVSTNVPDSPNK 270
Query: 160 IFIGGLPNYLNE-----------------------------------------DQAIAGL 178
IFIGGLP+YLNE D+A GL
Sbjct: 271 IFIGGLPSYLNEAQVKELLTAFGPLKAFNLVKDTATGNSKGYAFFEYLDASVTDRACQGL 330
Query: 179 NGMQLGDKKLIVQRASVGAK 198
NGM+LGDK L+VQRA++GAK
Sbjct: 331 NGMKLGDKTLLVQRANIGAK 350
>gi|430813569|emb|CCJ29085.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 545
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 110/197 (55%), Gaps = 43/197 (21%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQ+RR++VGNIP + E+ ++ FFN M + + NPV++ Q+N +K +AFLEFR
Sbjct: 225 SRQSRRIHVGNIPQPIDEEHLVNFFNDTMSCLNVTTSGDNPVISAQVNHEKGYAFLEFRQ 284
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFI 162
++ T A+ FDGI++ SLKIRRP DY TD+ + VP GVIST D+P+KI I
Sbjct: 285 PEDATVAIGFDGISYMNNSLKIRRPMDYIVPQMPTDDGSY-VP-GVISTNFTDTPNKIHI 342
Query: 163 GGLPNYLNEDQAI-----------------------------------------AGLNGM 181
GGLP YL+++Q I GLNGM
Sbjct: 343 GGLPTYLDDEQVIELLKSFGELKAFNLIKDAATNESKGFAFCEYVDPDVTDIACEGLNGM 402
Query: 182 QLGDKKLIVQRASVGAK 198
+LGDK L+V+RAS+G K
Sbjct: 403 ELGDKILVVKRASIGTK 419
>gi|449680331|ref|XP_002158219.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like, partial [Hydra
magnipapillata]
Length = 259
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 93/156 (59%), Gaps = 47/156 (30%)
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
FRS++ETT AMAFDGI +GQ+LKIRRP DYQP PG+++ A +P GV+STVV D+ +K
Sbjct: 1 FRSVEETTLAMAFDGIMLQGQALKIRRPKDYQPIPGISEMQATHIP-GVVSTVVSDTINK 59
Query: 160 IFIGGLPNYLNEDQ-----------------------------------------AIAGL 178
+F+GGLPNYLNEDQ AIAG+
Sbjct: 60 VFVGGLPNYLNEDQVKELLSTFGDLRSFNLVKDSATGLSKGYAFCEYVDIGITDVAIAGM 119
Query: 179 NGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGL 214
NGMQLGDKKL+VQRASVG+K + Q+ +PG
Sbjct: 120 NGMQLGDKKLVVQRASVGSKTMTA-----QLNIPGF 150
>gi|452823555|gb|EME30564.1| U2 snRNP auxiliary factor large subunit, putative isoform 1
[Galdieria sulphuraria]
Length = 522
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 113/221 (51%), Gaps = 58/221 (26%)
Query: 28 AAAAAAAVPVVGST------ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG 81
+A + +PV +T T+ ARRLYVGN+P VTE E+ +FFN ++L+ G
Sbjct: 184 SALSQYMIPVAPTTQPNTQQATKHARRLYVGNLPSDVTESEVADFFNSALYLAKGVDVPG 243
Query: 82 NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT-------P 134
+PV + +NLDK FAF+E S E A+ DG+ F+G SL++RRP+DY P P
Sbjct: 244 DPVQSVYLNLDKRFAFIELNSAAEAAAAIQMDGVLFRGMSLRMRRPNDYNPNIHAPVYPP 303
Query: 135 GVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------- 173
D +A+ GV+ST VPD P K+FIGGLP +L EDQ
Sbjct: 304 IGFDPSAL----GVVSTQVPDGPDKVFIGGLPYHLTEDQIKEILSSYGPLNAFNLVKDPN 359
Query: 174 --------------------AIAGLNGMQLGDKKLIVQRAS 194
AI GLNGM +GDK L V+RAS
Sbjct: 360 TGLSKGYAFFQYKDPSIVEAAIKGLNGMTMGDKTLTVRRAS 400
>gi|452823554|gb|EME30563.1| U2 snRNP auxiliary factor large subunit, putative isoform 2
[Galdieria sulphuraria]
Length = 538
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 111/233 (47%), Gaps = 66/233 (28%)
Query: 28 AAAAAAAVPVVGST------ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG 81
+A + +PV +T T+ ARRLYVGN+P VTE E+ +FFN ++L+ G
Sbjct: 184 SALSQYMIPVAPTTQPNTQQATKHARRLYVGNLPSDVTESEVADFFNSALYLAKGVDVPG 243
Query: 82 NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT-------- 133
+PV + +NLDK FAF+E S E A+ DG+ F+G SL++RRP+DY P
Sbjct: 244 DPVQSVYLNLDKRFAFIELNSAAEAAAAIQMDGVLFRGMSLRMRRPNDYNPNIHAPVYPP 303
Query: 134 --------PGVTDNAAVAVP---AGVISTVVPDSPHKIFIGGLPNYLNEDQ--------- 173
G + + GV+ST VPD P K+FIGGLP +L EDQ
Sbjct: 304 VCQLLTCFLGYIEKFQIGFDPSALGVVSTQVPDGPDKVFIGGLPYHLTEDQIKEILSSYG 363
Query: 174 --------------------------------AIAGLNGMQLGDKKLIVQRAS 194
AI GLNGM +GDK L V+RAS
Sbjct: 364 PLNAFNLVKDPNTGLSKGYAFFQYKDPSIVEAAIKGLNGMTMGDKTLTVRRAS 416
>gi|58268792|ref|XP_571552.1| rRNA primary transcript binding protein [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227787|gb|AAW44245.1| rRNA primary transcript binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 651
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 53/240 (22%)
Query: 17 PANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL 76
PA++ IP T VA A + PV RQ RLY+G I + E ++ +FFN M G+
Sbjct: 251 PAHLGIPATFVAGAFPPSNPV------RQNNRLYIGGIKEDMQEQQIQDFFNNLMKEKGM 304
Query: 77 AQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
A +PV CQIN D+NFAF+E + ++ T A+ DG+ G SL++RRP DY G+
Sbjct: 305 ADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRPKDYA---GI 361
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------------- 173
+ + GV++ V DSP+K+FIGG+P YLN++Q
Sbjct: 362 --DPLLQTFNGVVAPSVADSPNKLFIGGIPTYLNDEQVMELLKSFGELKSFNLVKESAGV 419
Query: 174 -----------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQ 216
AI GL+ LGD+ L+VQRA+VG +G AP+ L+Q
Sbjct: 420 SKGFAFAEYLDPEVTDMAIQGLHNFSLGDRNLVVQRAAVGRN--TGVNAPIPGSAAYLSQ 477
>gi|134113282|ref|XP_774666.1| hypothetical protein CNBF3460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257310|gb|EAL20019.1| hypothetical protein CNBF3460 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 652
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 53/240 (22%)
Query: 17 PANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL 76
PA++ IP T VA A + PV RQ RLY+G I + E ++ +FFN M G+
Sbjct: 252 PAHLGIPATFVAGAFPPSNPV------RQNNRLYIGGIKEDMQEQQIQDFFNNLMKEKGM 305
Query: 77 AQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
A +PV CQIN D+NFAF+E + ++ T A+ DG+ G SL++RRP DY G+
Sbjct: 306 ADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRPKDYA---GI 362
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------------- 173
+ + GV++ V DSP+K+FIGG+P YLN++Q
Sbjct: 363 --DPLLQTFNGVVAPSVADSPNKLFIGGIPTYLNDEQVMELLKSFGELKSFNLVKESAGV 420
Query: 174 -----------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQ 216
AI GL+ LGD+ L+VQRA+VG +G AP+ L+Q
Sbjct: 421 SKGFAFAEYLDPEVTDMAIQGLHNFSLGDRNLVVQRAAVGRN--TGVNAPIPGSAAYLSQ 478
>gi|321260434|ref|XP_003194937.1| splicing factor (U2 snRNP auxiliary factor large subunit)
[Cryptococcus gattii WM276]
gi|317461409|gb|ADV23150.1| Splicing factor (U2 snRNP auxiliary factor large subunit), putative
[Cryptococcus gattii WM276]
Length = 654
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 121/240 (50%), Gaps = 53/240 (22%)
Query: 17 PANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL 76
PA++ IP T VA A + PV RQ RLY+G I + E+++ +FFN M G+
Sbjct: 254 PAHLGIPATFVAGAFPPSNPV------RQNNRLYIGGIKEDMQENQIQDFFNNLMKEKGM 307
Query: 77 AQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
A +PV CQIN D+NFAF+E + ++ T A+ DG+ G SL++RRP DY G+
Sbjct: 308 ADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRPKDYA---GI 364
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------------- 173
+ + G+++ V DSP+K+FIGG+P YLN++Q
Sbjct: 365 --DPLLQTFNGIVAPSVADSPNKLFIGGIPTYLNDEQVMELLKSFGELKSFNLVKESAGV 422
Query: 174 -----------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQ 216
AI GL+ LGD+ L+VQRA+VG +G AP+ L+Q
Sbjct: 423 SKGFAFAEYLDPEVTDMAIQGLHNFALGDRNLVVQRAAVGRN--TGVNAPIPGSAAYLSQ 480
>gi|405121398|gb|AFR96167.1| rRNA primary transcript binding protein [Cryptococcus neoformans
var. grubii H99]
Length = 655
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 53/240 (22%)
Query: 17 PANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL 76
PA++ IP T VA A + PV RQ RLY+G I + E ++ +FFN M G+
Sbjct: 255 PAHLGIPATFVAGAFPPSNPV------RQNNRLYIGGIKEDMQEQQIQDFFNNLMKEKGM 308
Query: 77 AQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
A +PV CQIN D+NFAF+E + ++ T A+ DG+ G SL++RRP DY G+
Sbjct: 309 ADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRPKDYA---GI 365
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------------- 173
+ + GV++ V DSP+K+FIGG+P YLN++Q
Sbjct: 366 --DPLLQTFNGVVAPSVADSPNKLFIGGIPTYLNDEQVMELLKSFGELKSFNLVKESAGV 423
Query: 174 -----------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQ 216
AI GL+ LGD+ L+VQRA+VG +G AP+ L+Q
Sbjct: 424 SKGFAFAEYLDPEVTDMAIQGLHNFALGDRNLVVQRAAVGRN--TGVNAPIPGSAAYLSQ 481
>gi|384496094|gb|EIE86585.1| hypothetical protein RO3G_11296 [Rhizopus delemar RA 99-880]
Length = 502
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 104/197 (52%), Gaps = 53/197 (26%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+Q+++LYVG IP E + +FFN + + PV+ QIN +KNFAF+EF +
Sbjct: 192 KQSKKLYVGQIPSTTDEVTLCDFFNATIRHELQDKT---PVVGVQINHEKNFAFIEFHTS 248
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
+ T M DGI+F+G +LKIRRP+ YQP VP +ST VPD+P+K+F+G
Sbjct: 249 QQATACMVLDGISFQGNTLKIRRPNHYQP-------PEEQVPG--LSTNVPDTPNKVFVG 299
Query: 164 GLPNYLNEDQ-----------------------------------------AIAGLNGMQ 182
GLP YL ++Q A GLNGM+
Sbjct: 300 GLPVYLTDNQVMELLTSFGELRAFNLVKDTATGANKGFAFCEYADPSVTDLACQGLNGME 359
Query: 183 LGDKKLIVQRASVGAKN 199
LGDKKLIVQRASVGAK+
Sbjct: 360 LGDKKLIVQRASVGAKH 376
>gi|159473054|ref|XP_001694654.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
gi|158276466|gb|EDP02238.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
Length = 306
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 103/204 (50%), Gaps = 45/204 (22%)
Query: 36 PVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKN 94
P V TR ARR+YVG +P TE + FF+ + + G GN V+ IN +KN
Sbjct: 2 PAVSQQATRHARRIYVGGLPPTATEQSISSFFSHALAAIGGNTAGPGNAVVNVYINREKN 61
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA---GVIST 151
FAF+E R+++ET+ +MA DGI F+G S+++RRP+DY P V+ + PA I
Sbjct: 62 FAFVELRTVEETSNSMALDGIMFEGVSVRVRRPNDYNPAAAVSLGPSTPNPALNLAAIGL 121
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
D+P +IF+GGLP YL EDQ
Sbjct: 122 NPNDNPDRIFVGGLPYYLTEDQCRELLGSFGAIKSFDLVKDRDTGNSKGYGFVVYQDTSV 181
Query: 174 ---AIAGLNGMQLGDKKLIVQRAS 194
A AGLNG+++GD+ L V+RA+
Sbjct: 182 TDIACAGLNGLKMGDRTLTVRRAT 205
>gi|426390304|ref|XP_004061546.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Gorilla gorilla
gorilla]
Length = 319
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 89/161 (55%), Gaps = 29/161 (18%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTE--------- 60
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEVLPSPAPTL 171
Query: 61 -------------DEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
Q + L P + L + A L FRS+DETT
Sbjct: 172 SLVPLPHSSPSLHSLSPTCTGQTLLLRPPGPLPDGP-----MELSQPGAGLGFRSVDETT 226
Query: 108 QAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGV 148
QAMAFDGI F+GQSLKIRRPHDYQP PG+++N +V VP +
Sbjct: 227 QAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGNI 267
>gi|402223467|gb|EJU03531.1| hypothetical protein DACRYDRAFT_77158 [Dacryopinax sp. DJM-731 SS1]
Length = 392
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 49/201 (24%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPV--LACQINLDKNFAFLE 99
+ +QARRLY+G+I TE+ + F + + G+ + G V +++ +KN+A++E
Sbjct: 52 LEKQARRLYIGDITPDTTEENLTAFLKKTLPELGI-KVEGEDVGFEEVRVSHEKNYAYIE 110
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAV--AVPAGVISTVVPDSP 157
F + D+ T+ M DG F GQ LKIRRPHDY TD A V + GV+ST VPDS
Sbjct: 111 FSNPDDATKTMELDGTVFLGQPLKIRRPHDYL---SATDLAVVFGGIVPGVVSTNVPDSI 167
Query: 158 HKIFIGGLPNYLNE-----------------------------------------DQAIA 176
+KIF+GGLP YLNE D A
Sbjct: 168 NKIFVGGLPTYLNEAQVMELLQTFGELRAFNLVKDGSTGVSKGFAFFEYMDPGVTDVACQ 227
Query: 177 GLNGMQLGDKKLIVQRASVGA 197
GLNGM+LGD+ L+VQRAS+GA
Sbjct: 228 GLNGMELGDRYLVVQRASIGA 248
>gi|328766440|gb|EGF76494.1| hypothetical protein BATDEDRAFT_21058 [Batrachochytrium
dendrobatidis JAM81]
Length = 551
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 99/197 (50%), Gaps = 44/197 (22%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
I RQ +RLY GNIP E+ ++ F + GL + GN + IN ++N+AF+EFR
Sbjct: 229 IARQFKRLYFGNIPVDCIEERILSFASSSYEKLGLPKDPGNAAVNAYINRERNYAFVEFR 288
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
S +E T+AMA DG F G LK+RRP DY P D A P+ +T +S KIF
Sbjct: 289 SPEEATRAMALDGSLFDGNILKVRRPKDYNP-EAAPDGA--TQPSIAPATSAQESLDKIF 345
Query: 162 IGGLPNYLNEDQ-----------------------------------------AIAGLNG 180
+G +P YL++DQ A GLNG
Sbjct: 346 VGAIPTYLSDDQVQELLKTFGELKTFSLIRDSATGLSKGFAFCEYVDGQITDAACQGLNG 405
Query: 181 MQLGDKKLIVQRASVGA 197
M+LG+KKLIVQRASVG+
Sbjct: 406 MELGEKKLIVQRASVGS 422
>gi|301117646|ref|XP_002906551.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
gi|262107900|gb|EEY65952.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
Length = 569
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 98/196 (50%), Gaps = 46/196 (23%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
TR ARRLYVG I ++E E+ FFN + + + G V++ IN +++FAF+E RS
Sbjct: 228 TRHARRLYVGGI-GEISEPEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRS 286
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAV----AVPAGVISTVVPDSPH 158
I+ TT M DG+++ GQ LKIRRP+DY P D + G++ST V D P
Sbjct: 287 IELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPG 346
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------------AIAG 177
KIFIGGLP +LNE+Q A G
Sbjct: 347 KIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACIG 406
Query: 178 LNGMQLGDKKLIVQRA 193
LN MQLGDK L V+RA
Sbjct: 407 LNDMQLGDKTLTVRRA 422
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFN-----QQMHLSGLAQAAGNPVLAC 87
AA+ +V +T++ ++++G +P+ + E+++ E + HL V
Sbjct: 332 AALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHL----------VKEL 381
Query: 88 QINLDKNFAFLEFRSIDETTQA-MAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA 146
NL K + F E+ I+ T A + + + ++L +RR + + AVA A
Sbjct: 382 SSNLSKGYGFCEYMDINVTDAACIGLNDMQLGDKTLTVRRAMSQE------NAKAVASAA 435
Query: 147 GVIST 151
G ++T
Sbjct: 436 GTVNT 440
>gi|261196608|ref|XP_002624707.1| splicing factor u2af large subunit [Ajellomyces dermatitidis
SLH14081]
gi|239595952|gb|EEQ78533.1| splicing factor u2af large subunit [Ajellomyces dermatitidis
SLH14081]
gi|239609528|gb|EEQ86515.1| splicing factor u2af large subunit [Ajellomyces dermatitidis ER-3]
gi|327350238|gb|EGE79095.1| splicing factor u2af large subunit [Ajellomyces dermatitidis ATCC
18188]
Length = 570
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 119/241 (49%), Gaps = 66/241 (27%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA 80
I P TT+ A ++ V+ + +RQA+RL+V N+P TE+ +++FFN + L+GL
Sbjct: 215 IHPPTTITAPGSSTNTVLKPSNSRQAKRLFVHNLPPSATEERLVQFFN--LQLNGLNVIK 272
Query: 81 G-NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFK---------------GQSLKI 124
G +P L+ Q++ DK FA LEFR+ +TT A+AFDGI + Q L I
Sbjct: 273 GVDPCLSAQLSRDKTFALLEFRNAADTTVALAFDGITMEDSGEMDTSNGDVDGPSQGLSI 332
Query: 125 RRPHDYQPTPGVTDNAAVAVP--AGVISTVVPDSPHKIFIGGLPNYLNEDQ--------- 173
RRP DY + +A P GV+S VVPDSP+KI + +P ++ E+
Sbjct: 333 RRPKDY-----ILPSAVEEEPQQEGVVSNVVPDSPNKICVSNIPPFIEEEPVTMLLVSFG 387
Query: 174 --------------------------------AIAGLNGMQLGDKKLIVQRASVGAKNAS 201
A+ LNGM+LG+K+L V RASVG A+
Sbjct: 388 ELKSFILVKDSETGESRGIAFCEYLDPTSTEIAVENLNGMELGNKRLKVVRASVGTTQAA 447
Query: 202 G 202
G
Sbjct: 448 G 448
>gi|353240191|emb|CCA72072.1| related to pre-mRNA splicing factor U2AF large chain
[Piriformospora indica DSM 11827]
Length = 403
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Query: 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFA 96
V S + RQ+RRLY+G+I E+ + FFN QM L ++ PVLA Q+N +KN+A
Sbjct: 37 VSNSNLARQSRRLYLGSITPLADEESIALFFNSQMRERKLTTSSAPPVLAVQVNREKNYA 96
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDS 156
F+EFRS ++ T MA DG F L++RRPHDY +T VA A ++ +PDS
Sbjct: 97 FVEFRSAEDATAGMALDGTVFLDGPLRVRRPHDYAGPEAMT---GVAGFATLLPATMPDS 153
Query: 157 PHKIFIGGLPNYLNEDQAIAGLNGM 181
+KIFIG LP +L EDQ + L
Sbjct: 154 VNKIFIGNLPTHLTEDQIVELLKSF 178
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAK 198
D A LNGM LGDKKL+VQRASVGAK
Sbjct: 226 DIATESLNGMDLGDKKLVVQRASVGAK 252
>gi|440468063|gb|ELQ37246.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae Y34]
gi|440489023|gb|ELQ68704.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae P131]
Length = 640
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 58/218 (26%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL + N+P G TED ++ F N Q++ + +A+ +P LACQ+ D +FA +EF
Sbjct: 287 TNSRQSKRLILSNLPAGTTEDSLISFLNLQLNGLNVIEAS-DPCLACQMAPDGSFAMVEF 345
Query: 101 RSIDETTQAMAFDGINFKGQS-------------LKIRRPHDYQPTPGVTDNAAVAVPAG 147
RS +TT A A DGI+ + + L +RRP DY P V D+ G
Sbjct: 346 RSPSDTTVAYALDGISMEAEDAGNGDANGAASKGLAMRRPKDYI-VPAVVDDTGYE--PG 402
Query: 148 VISTVVPDSPHKIFIGGLPNYLNEDQ---------------------------------- 173
V+S+ V D+PHKI + LP YL ++Q
Sbjct: 403 VVSSRVVDTPHKISVTNLPAYLTDEQVVELLSSFGELKALVLAKDSSTEESRGIAFCEYV 462
Query: 174 -------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
AI GLNGM+LGDK+L V++AS+G SG +
Sbjct: 463 DVTNTDVAIEGLNGMELGDKRLKVRKASIGITQVSGME 500
>gi|389642205|ref|XP_003718735.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae 70-15]
gi|351641288|gb|EHA49151.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae 70-15]
Length = 620
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 58/218 (26%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL + N+P G TED ++ F N Q++ + +A+ +P LACQ+ D +FA +EF
Sbjct: 287 TNSRQSKRLILSNLPAGTTEDSLISFLNLQLNGLNVIEAS-DPCLACQMAPDGSFAMVEF 345
Query: 101 RSIDETTQAMAFDGINFKGQS-------------LKIRRPHDYQPTPGVTDNAAVAVPAG 147
RS +TT A A DGI+ + + L +RRP DY P V D+ G
Sbjct: 346 RSPSDTTVAYALDGISMEAEDAGNGDANGAASKGLAMRRPKDYI-VPAVVDDTGYE--PG 402
Query: 148 VISTVVPDSPHKIFIGGLPNYLNEDQ---------------------------------- 173
V+S+ V D+PHKI + LP YL ++Q
Sbjct: 403 VVSSRVVDTPHKISVTNLPAYLTDEQVVELLSSFGELKALVLAKDSSTEESRGIAFCEYV 462
Query: 174 -------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
AI GLNGM+LGDK+L V++AS+G SG +
Sbjct: 463 DVTNTDVAIEGLNGMELGDKRLKVRKASIGITQVSGME 500
>gi|302854386|ref|XP_002958701.1| hypothetical protein VOLCADRAFT_121741 [Volvox carteri f.
nagariensis]
gi|300255941|gb|EFJ40221.1| hypothetical protein VOLCADRAFT_121741 [Volvox carteri f.
nagariensis]
Length = 294
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 12/125 (9%)
Query: 58 VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
++E + + FN M +G G PV++C +N +K FAFLEFRS++ET+ AMAFDG+
Sbjct: 1 MSEVSLTQLFNNVMMAAGATTQPGGPVISCYMNNEKRFAFLEFRSVEETSNAMAFDGLQC 60
Query: 118 KGQSLKIRRPHDYQPT---------PGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNY 168
+G++LK+RRPHDY P P N A+ GV++T+V D P+K+F+GGLP Y
Sbjct: 61 QGETLKVRRPHDYNPAAAKLLGPTEPSAKINLAL---LGVVNTLVEDGPNKVFVGGLPGY 117
Query: 169 LNEDQ 173
L+E+Q
Sbjct: 118 LSEEQ 122
>gi|326428095|gb|EGD73665.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 2
[Salpingoeca sp. ATCC 50818]
Length = 415
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 43/213 (20%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R+L V N+P G + ++M F N + + L G PV+ C ++ D A LEFRS+DE
Sbjct: 36 RQLVVENLPEGTRDHDLMSFMNDCIASNKLITQPGQPVIKCTLSEDGKSAVLEFRSVDEA 95
Query: 107 TQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
T + FD FKG L++RRP +Y+ G + A V S VV DSP+KI+IGG+P
Sbjct: 96 TNGLVFDRERFKGAQLRVRRPDNYEAPKGHITRIPMQSGANV-SAVVQDSPYKIYIGGIP 154
Query: 167 NYLNEDQA-----------------------------------------IAGLNGMQLGD 185
YL+E+Q I LN +++G+
Sbjct: 155 PYLSEEQVKELLEPFGQLKSFHLVMDTSTGQSKGFAFCEYMDPAITDTMIGALNDLRIGE 214
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQVPGLTQVG 218
K+L+VQRAS+GA+ + Q P+ +P G
Sbjct: 215 KRLLVQRASIGARGGAQQNNPMH-SIPAFKSAG 246
>gi|348688506|gb|EGZ28320.1| hypothetical protein PHYSODRAFT_309221 [Phytophthora sojae]
Length = 694
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 98/196 (50%), Gaps = 46/196 (23%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
TR ARRLYVG I ++E E+ FFN + + + G V++ IN +++FAF+E R+
Sbjct: 353 TRHARRLYVGGIG-EISEPEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRT 411
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAV----AVPAGVISTVVPDSPH 158
I+ TT M DG+++ GQ LKIRRP+DY P D + G++ST V D P
Sbjct: 412 IELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPG 471
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------------AIAG 177
KIFIGGLP +LNE+Q A G
Sbjct: 472 KIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACLG 531
Query: 178 LNGMQLGDKKLIVQRA 193
LN M+LGDK L V+RA
Sbjct: 532 LNDMRLGDKTLTVRRA 547
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFN-----QQMHLSGLAQAAGNPVLAC 87
AA+ +V +T++ ++++G +P+ + E+++ E + HL V
Sbjct: 457 AALGIVSTTVSDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHL----------VKEL 506
Query: 88 QINLDKNFAFLEFRSIDETTQA-MAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA 146
NL K + F E+ I+ T A + + + ++L +RR + + AVA A
Sbjct: 507 SSNLSKGYGFCEYMDINVTDAACLGLNDMRLGDKTLTVRRAMSQE------NAKAVASAA 560
Query: 147 GVIST 151
G ++T
Sbjct: 561 GTVNT 565
>gi|359497050|ref|XP_002267854.2| PREDICTED: splicing factor U2af large subunit B-like, partial
[Vitis vinifera]
Length = 410
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 108/215 (50%), Gaps = 56/215 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G + G+ V+ IN +K FAF+E R
Sbjct: 103 TRHARRVYVGGLPPLANEQTIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 162
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G S+++RRP DY QP+P + + AAV + GVI
Sbjct: 163 SVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPSPHL-NLAAVGLMPGVIG 221
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
+ P +IF+GGLP Y E+Q
Sbjct: 222 GA--EGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPA 279
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
A A LNG+++GDK L V+RA+VG+ A +Q
Sbjct: 280 VTDIACAALNGLKMGDKTLTVRRATVGSGQAKSEQ 314
>gi|225562835|gb|EEH11114.1| splicing factor u2af large subunit [Ajellomyces capsulatus G186AR]
Length = 571
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 116/241 (48%), Gaps = 66/241 (27%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA 80
I P TT A + V+ + +RQA+RL+V N+P TE+ +++FFN + L+GL
Sbjct: 216 IHPPTTSTAPGTSTNTVLKPSNSRQAKRLFVHNLPSSATEESLVQFFN--LQLNGLNVIK 273
Query: 81 G-NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI---------------NFKGQSLKI 124
G +P + Q++ DK FA LEFR+ +TT A+AFDGI N Q L I
Sbjct: 274 GVDPCVTAQLSNDKTFALLEFRNAADTTVALAFDGITMEDNDDMDTTNGDSNGSNQGLSI 333
Query: 125 RRPHDYQPTPGVTDNAAVAVP--AGVISTVVPDSPHKIFIGGLPNYLNE----------- 171
RRP DY + +A P GV+S VVPDSP+KI + +P ++ E
Sbjct: 334 RRPKDY-----ILPSAVEGEPHQEGVVSNVVPDSPNKICVSNIPPFIEEEPVTMLLVSFG 388
Query: 172 ------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
D A+ LNGM+LG+KKL V RAS+G A+
Sbjct: 389 ELKSFVLVKDSETGESRGIAFCEYRDPMSTDIAVENLNGMELGNKKLKVVRASIGTTQAA 448
Query: 202 G 202
G
Sbjct: 449 G 449
>gi|384246661|gb|EIE20150.1| hypothetical protein COCSUDRAFT_30785 [Coccomyxa subellipsoidea
C-169]
Length = 212
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 97/197 (49%), Gaps = 47/197 (23%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R ARR+YVG +P T+ ++ ++ N+ M +G A G P+ +C+I +K++AFLEFRS+
Sbjct: 8 RPARRIYVGGLPPETTDADLRQYINELMVSTGGCAATGYPIASCKIYTEKSYAFLEFRSV 67
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPT------PGVTDNAAVAVPAGVISTVVPDSP 157
+E + MAFDG+ FK L++RRP++Y P D ++ TVV DSP
Sbjct: 68 EEASNCMAFDGVAFKDSYLRVRRPNNYDINVAVMLGPTDPDPTMDVSNLDIVKTVVQDSP 127
Query: 158 HKIFIGGLPNYLNEDQ-----------------------------------------AIA 176
HK+FIGGLP EDQ I
Sbjct: 128 HKLFIGGLPCDWTEDQVKELLLPFGSLKAFNLVMDKNTGNSKGYAFCEYQDIGLTDYVIQ 187
Query: 177 GLNGMQLGDKKLIVQRA 193
LNG Q+G+K L V+RA
Sbjct: 188 NLNGKQIGNKFLTVKRA 204
>gi|255073589|ref|XP_002500469.1| RNA binding protein [Micromonas sp. RCC299]
gi|226515732|gb|ACO61727.1| RNA binding protein [Micromonas sp. RCC299]
Length = 489
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 112/249 (44%), Gaps = 67/249 (26%)
Query: 36 PVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA--GNPVLACQINLDK 93
PV TR ARR+YVGN+P VTE ++ FFN MH G AA G+PVL IN +K
Sbjct: 114 PVPNQQATRHARRVYVGNLPGTVTEPKVAAFFNNAMHAIGGTVAALPGDPVLNVYINYEK 173
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAV 142
FAF+EFR+++ET+ MA DG +G ++++RRP+DY QP G+ A
Sbjct: 174 KFAFVEFRTVEETSNCMALDGAVLEGIAMRVRRPNDYNVMAASSLGPSQPKDGLNLEAIG 233
Query: 143 AVPAGVI---------STVVPDSPHKIFIGGLPNYLNE---------------------- 171
PA S D H++FIGGLP +L E
Sbjct: 234 LNPAAAGGGGAGAANASLTEEDLQHRLFIGGLPYFLTETMVKELVEAFGPTKQFQLVVDR 293
Query: 172 -------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQA----PVQ 208
D A GL+GM++G+K L VQRA G A A P
Sbjct: 294 ETGNSKGYGFFVYQDHSVTDVACQGLHGMKMGEKSLTVQRAMQGGAGAPKPTAASVGPGH 353
Query: 209 IQVPGLTQV 217
+PG +V
Sbjct: 354 TALPGADEV 362
>gi|240279650|gb|EER43155.1| splicing factor u2af large subunit [Ajellomyces capsulatus H143]
gi|325092783|gb|EGC46093.1| splicing factor u2af large subunit [Ajellomyces capsulatus H88]
Length = 572
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 115/239 (48%), Gaps = 66/239 (27%)
Query: 23 PETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG- 81
P TT A + V+ + +RQA+RL+V N+P TE+ +++FFN + L+GL G
Sbjct: 219 PTTTSTAPGTSTNTVLKPSNSRQAKRLFVHNLPSSATEESLVQFFN--LQLNGLNVIKGV 276
Query: 82 NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI---------------NFKGQSLKIRR 126
+P + Q++ DK FA LEFR+ +TT A+AFDGI N Q L IRR
Sbjct: 277 DPCVTAQLSNDKTFALLEFRNAADTTVALAFDGITMEDNDEMDTTNGDSNGSNQGLSIRR 336
Query: 127 PHDYQPTPGVTDNAAVAVP--AGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
P DY + +A P GV+S VVPDSP+KI + +P ++ E
Sbjct: 337 PKDY-----ILPSAVEGEPNQEGVVSNVVPDSPNKICVSNIPPFIEEEPVTMLLVSFGEL 391
Query: 172 ----------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG 202
D A+ LNGM+LG+KKL V RAS+G A+G
Sbjct: 392 KSFVLVKDSETGESRGIAFCEYRDPMSTDIAVENLNGMELGNKKLKVVRASIGTTQAAG 450
>gi|392572624|gb|EIW65769.1| hypothetical protein TREMEDRAFT_41238 [Tremella mesenterica DSM
1558]
Length = 596
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 106/217 (48%), Gaps = 51/217 (23%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA-QAAGNPVLA 86
+A A + P G+ RQA+R+YVG I +T+ ++EFFN M G + G+P+ A
Sbjct: 214 SALIAGSFPPPGANGLRQAKRIYVGGITESMTDASLLEFFNTTMSERGFTLEIPGDPIGA 273
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA 146
Q+N +K FAFLEFRS +E + A+ D + F+ L+++RP DY + A
Sbjct: 274 VQVNHEKAFAFLEFRSAEEASSALKLDNVMFEDVPLRVKRPKDYTGLDPLQHTMGGA--- 330
Query: 147 GVISTVVPDSPHKIFIGGLPNYLNE----------------------------------- 171
+ DSP+K+FIGGLP YL+E
Sbjct: 331 ----QAMSDSPNKLFIGGLPTYLDEAQVMELLKSFGELRSFNLVKDPDSSENKGFAFAEY 386
Query: 172 ------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG 202
D AI+GLN LGD+ L+VQRA+VG ASG
Sbjct: 387 TDPSNTDMAISGLNNFSLGDRILVVQRAAVG--RASG 421
>gi|308801273|ref|XP_003077950.1| U2 snRNP auxiliary factor, large subunit (ISS) [Ostreococcus tauri]
gi|116056401|emb|CAL52690.1| U2 snRNP auxiliary factor, large subunit (ISS) [Ostreococcus tauri]
Length = 388
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 56/221 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
TR ARR+Y+G P E E+ FFN + G + PV+ INL+K FAF+EFRS
Sbjct: 54 TRHARRIYLGGCPTMANEQELSSFFNDALVAVGGTTSEEAPVVNVYINLEKKFAFVEFRS 113
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQP---------TPGVTDNAAV------AVPAG 147
++E + A+A DG+ +G+ ++IRRP+DY P TP N A+
Sbjct: 114 VEECSNALALDGVMIQGEPVRIRRPNDYNPQIAQGLGPSTPNPKLNLQAIGLDPSALARS 173
Query: 148 VISTVVPDSPHKIFIGGLPNYLNE------------------------------------ 171
+ ++ + P++IFIGGLP YL E
Sbjct: 174 ATTNILQEDPNRIFIGGLPYYLEEPQVRELLEAFGPIARFDLVRDKENGNSKGYGFVVYQ 233
Query: 172 -----DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A GLNGMQ+G+K L V+RA G + G Q V
Sbjct: 234 DAAVTDIACQGLNGMQMGEKTLTVRRAEQGRTDLIGGQVSV 274
>gi|154280004|ref|XP_001540815.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412758|gb|EDN08145.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 571
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 116/241 (48%), Gaps = 66/241 (27%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA 80
I P TT A + V+ + +RQA+RL+V N+P TE+ +++FFN + L+GL
Sbjct: 216 IHPPTTSTAPGTSTNTVLKPSNSRQAKRLFVHNLPSSATEESLVQFFN--LQLNGLNVIK 273
Query: 81 G-NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI---------------NFKGQSLKI 124
G +P + Q++ DK FA +EFR+ +TT A+AFDGI N Q L I
Sbjct: 274 GVDPCVTAQLSNDKTFALVEFRNAADTTVALAFDGITMEDNDEMDTTNGNSNGSNQGLSI 333
Query: 125 RRPHDYQPTPGVTDNAAVAVP--AGVISTVVPDSPHKIFIGGLPNYLNE----------- 171
RRP DY + +A P GV+S VVPDSP+KI + +P ++ E
Sbjct: 334 RRPKDY-----ILPSAVEGEPHQEGVVSNVVPDSPNKICVSNIPPFIEEEPVTMLLVSFG 388
Query: 172 ------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNAS 201
D A+ LNGM+LG+KKL V RAS+G A+
Sbjct: 389 ELKSFVLVKDSETGESRGIAFCEYRDPMSTDIAVENLNGMELGNKKLKVVRASIGTTQAA 448
Query: 202 G 202
G
Sbjct: 449 G 449
>gi|380481793|emb|CCF41637.1| U2 snRNP auxilliary factor [Colletotrichum higginsianum]
Length = 550
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 55/211 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL + N+P TE+ + FFN Q++ + ++A +P +CQ++ D +FA +EFR+
Sbjct: 222 SRQAKRLLINNLPPSATEESIQSFFNLQLNGLNIIESA-DPCTSCQVSKDNSFAVVEFRN 280
Query: 103 IDETTQAMAFDGINFKG----------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
E T A+A DGI+ + Q L I RP DY P V D+ V GV+S V
Sbjct: 281 ASEATIALALDGISMEADDATNGEAANQGLSIHRPKDY-IVPAVVDD--VPYEPGVVSNV 337
Query: 153 VPDSPHKIFIGGLPNYLNEDQ--------------------------------------- 173
V D+P K+ I LP YL+++Q
Sbjct: 338 VIDTPSKLSIANLPTYLSDEQVSELLVSFGELKAFVLVRDRSTEESRGIAFCEYVDPAAT 397
Query: 174 --AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
AI GLNGM LGDKKL VQ+ASVG +G
Sbjct: 398 DVAIQGLNGMDLGDKKLRVQKASVGVTQVAG 428
>gi|440633242|gb|ELR03161.1| hypothetical protein GMDG_05987 [Geomyces destructans 20631-21]
Length = 559
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 52/206 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL V N+P ++E+ ++EFFN + L+GL G +P L Q++ DK+FA +EF+
Sbjct: 238 SRQAKRLLVHNLPKTLSEEGIVEFFN--LQLNGLNVVEGSDPCLTAQVSKDKSFALVEFK 295
Query: 102 SIDETTQAMAFDGI----NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSP 157
+ + T A+A DGI N ++L IRRP DY P V + A+ P GV++ VVPD+P
Sbjct: 296 TTSDATVALAMDGIGIEENGGSRALSIRRPKDYI-VPAV--DEAMHEP-GVVTNVVPDTP 351
Query: 158 HKIFIGGLPNYLNEDQ-----------------------------------------AIA 176
+KI I +P YL ++Q A+
Sbjct: 352 NKISISNVPPYLTDEQVTELLVSFGELKAFVLAKDSTTEESRGIAFCEYVDAAATDIAVE 411
Query: 177 GLNGMQLGDKKLIVQRASVGAKNASG 202
GLNGM+LGDK L VQRAS+G +G
Sbjct: 412 GLNGMELGDKHLKVQRASIGTTQTAG 437
>gi|242069419|ref|XP_002449986.1| hypothetical protein SORBIDRAFT_05g026740 [Sorghum bicolor]
gi|241935829|gb|EES08974.1| hypothetical protein SORBIDRAFT_05g026740 [Sorghum bicolor]
Length = 545
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 118/259 (45%), Gaps = 68/259 (26%)
Query: 2 GVNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTED 61
G+ +L G AGQ VI P+ A TR ARR+YVG +P E
Sbjct: 178 GMFPNMLPFGVAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPSANEQ 225
Query: 62 EMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ 120
+ +FNQ M + G G+ VL IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 226 TVAVYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGA 285
Query: 121 SLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL 169
+K+RRP DY QP+P + + AAV + AG ST + P +IF+GGLP Y
Sbjct: 286 PVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTAG--STGGLEGPDRIFVGGLPYYF 342
Query: 170 NE-----------------------------------------DQAIAGLNGMQLGDKKL 188
E D A A LNG+++GDK L
Sbjct: 343 TEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLTVTDIACAALNGIKMGDKTL 402
Query: 189 IVQRASVGAKNASGQQAPV 207
V+RA+ GA +Q +
Sbjct: 403 TVRRANQGASQPRPEQESI 421
>gi|237838479|ref|XP_002368537.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|211966201|gb|EEB01397.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|221505828|gb|EEE31473.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
VEG]
Length = 816
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 71/225 (31%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
S +R AR++YVGN+P VT+ E+ ++FN+ + + G+ ++ +N + FAFLE
Sbjct: 272 SAQSRHARKVYVGNLPVPVTQAEVQQYFNELLTTLLPKKVPGDTIVHVYVNPSRRFAFLE 331
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---------------------PGVTD 138
RSI+E + DG++++ +L +RRP DY PT P +
Sbjct: 332 HRSIEEANFTLGLDGVSWRNCALSLRRPQDYNPTLAEQQYREERARLGSMTGFAVPPPSQ 391
Query: 139 NAAVAVPA---------GVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
A A PA G++ST VPDSPHKIFIGGLP+ + E
Sbjct: 392 AATPASPAESSLIAGALGIVSTTVPDSPHKIFIGGLPHSITEQGCKQLLEAFGQLRALHV 451
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRA 193
D A+AGLN M++ D+ L V+RA
Sbjct: 452 VKDQQRGDCKGFAFCEYLDPNVTDVAVAGLNNMRIADRVLQVRRA 496
>gi|221484193|gb|EEE22489.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
GT1]
Length = 820
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 71/225 (31%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
S +R AR++YVGN+P VT+ E+ ++FN+ + + G+ ++ +N + FAFLE
Sbjct: 276 SAQSRHARKVYVGNLPVPVTQAEVQQYFNELLTTLLPKKVPGDTIVHVYVNPSRRFAFLE 335
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---------------------PGVTD 138
RSI+E + DG++++ +L +RRP DY PT P +
Sbjct: 336 HRSIEEANFTLGLDGVSWRNCALSLRRPQDYNPTLAEQQYREERARLGSMTGFAVPPPSQ 395
Query: 139 NAAVAVPA---------GVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
A A PA G++ST VPDSPHKIFIGGLP+ + E
Sbjct: 396 AATPASPAESSLIAGALGIVSTTVPDSPHKIFIGGLPHSITEQGCKQLLEAFGQLRALHV 455
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRA 193
D A+AGLN M++ D+ L V+RA
Sbjct: 456 VKDQQRGDCKGFAFCEYLDPNVTDVAVAGLNNMRIADRVLQVRRA 500
>gi|384249807|gb|EIE23288.1| hypothetical protein COCSUDRAFT_23864, partial [Coccomyxa
subellipsoidea C-169]
Length = 464
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 53/205 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+ + + G G V+ IN +K FAF+EFR
Sbjct: 136 TRHARRVYVGGLPPTGNEQNIATFFSNALAAIGGTTAGPGASVVNVYINYEKKFAFVEFR 195
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT------PGVTDN----AAVAVPAGVIST 151
+++ET+ AMA DGI F+G S+++RRP+DY P P V + AA+ + AG ++
Sbjct: 196 TVEETSNAMALDGIMFEGVSVRVRRPNDYNPAAASALGPSVPNPNLNLAAIGLQAGGMNA 255
Query: 152 V-VPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
V + D+ ++F+GGLP YLNE+Q
Sbjct: 256 VAMIDAAERVFVGGLPYYLNEEQCRELLGSFGGIKSFDLVKDRETGNSKGYGFVVYTDPN 315
Query: 174 ----AIAGLNGMQLGDKKLIVQRAS 194
A AGLNGM++G++ L V+RA+
Sbjct: 316 VTDIACAGLNGMRMGERTLTVRRAT 340
>gi|258576333|ref|XP_002542348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902614|gb|EEP77015.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 621
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 58/213 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+V N+P V+ED + +FFN + L+GL +G +P ++ Q++ D FA LEF+
Sbjct: 220 SRQAKRLFVHNLPPSVSEDTLAQFFN--LQLNGLNVISGVDPCISAQVSSDGKFALLEFK 277
Query: 102 SIDETTQAMAFDGINFK-----------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+ + T A+A DGI+ + GQ L ++RP DY P D++ GV+S
Sbjct: 278 TASDATVALALDGISLEHDDANGTSSAPGQGLSLKRPKDYI-VPSEADDSNRQ--DGVVS 334
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+KI + +P ++ E+Q
Sbjct: 335 NEVPDSPNKICVTNIPPFIQEEQVTMLLVSFGELKSFVLVKDSGTDESRGIAFCEYVDPS 394
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGDK+L V RAS+GA A+G
Sbjct: 395 STNIAVEGLNGMELGDKRLKVTRASIGATQAAG 427
>gi|159487587|ref|XP_001701804.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
gi|158281023|gb|EDP06779.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
Length = 309
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 12/117 (10%)
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQ M SG G PV++C +N DK FAFLE R ++ET+ AMAFDGI +G+ LK+R
Sbjct: 1 FFNQIMMASGATTQPGPPVMSCFMNNDKRFAFLEMRCVEETSNAMAFDGIQCQGEVLKVR 60
Query: 126 RPHDYQPTP----GVTD-----NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
RPHDY P G TD N A+ GVI+T+V D P+K++IGGLP L+E+Q
Sbjct: 61 RPHDYNPAAAKLLGPTDPSPKVNLAL---LGVINTLVEDGPNKVYIGGLPACLSEEQ 114
>gi|325191172|emb|CCA25959.1| splicing factor U2af large subunit putative [Albugo laibachii Nc14]
Length = 553
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 99/198 (50%), Gaps = 50/198 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
TR ARR+YVG I V E E+ FFN + + + G V++ IN +++FAF+E +S
Sbjct: 211 TRHARRIYVGGIG-EVNETEISAFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKS 269
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA------GVISTVVPDS 156
I+ TT M DGI F+GQ LK+RRP+DY PG+ +PA G++ST V D
Sbjct: 270 IELTTACMNLDGIAFRGQPLKVRRPNDY--NPGLVPKDLGPIPALNLAALGIVSTTVQDG 327
Query: 157 PHKIFIGGLPNYLNEDQ-----------------------------------------AI 175
P K+FIGG+P +L E+Q A
Sbjct: 328 PGKVFIGGIPYHLTEEQIKELLQAFGPLKSFHLVKDLTTNLSKGYAFCEYMDSGVTDAAC 387
Query: 176 AGLNGMQLGDKKLIVQRA 193
GLN M+LGD+ L V+RA
Sbjct: 388 IGLNDMKLGDRTLTVRRA 405
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFN-----QQMHLSGLAQAAGNPVLAC 87
AA+ +V +T+ ++++G IP+ +TE+++ E + HL V
Sbjct: 315 AALGIVSTTVQDGPGKVFIGGIPYHLTEEQIKELLQAFGPLKSFHL----------VKDL 364
Query: 88 QINLDKNFAFLEFRSIDETTQA-MAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA 146
NL K +AF E+ T A + + + ++L +RR Q + V NAA V A
Sbjct: 365 TTNLSKGYAFCEYMDSGVTDAACIGLNDMKLGDRTLTVRRALS-QESAKVIANAAGTVNA 423
Query: 147 GV 148
GV
Sbjct: 424 GV 425
>gi|429854658|gb|ELA29655.1| splicing factor u2af large subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 559
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 105/211 (49%), Gaps = 55/211 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL + N+P TED ++ FFN Q++ + ++ +P +CQ++ D +FA +EFR+
Sbjct: 231 SRQAKRLLINNLPPSATEDSIVGFFNLQLNGLNVIEST-DPCTSCQLSKDHSFAVVEFRN 289
Query: 103 IDETTQAMAFDGINFKGQS----------LKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
E T A+A DGI + L IRRP DY P V D+ V GV+S +
Sbjct: 290 ASEATVALALDGITMEADDATNGAAGSNGLVIRRPKDYI-VPAVVDD--VPYEPGVVSNI 346
Query: 153 VPDSPHKIFIGGLPNYLNEDQ--------------------------------------- 173
V D+P+KI I +P YL+++Q
Sbjct: 347 VIDTPNKISIANMPPYLSDEQVTELLVSFGELKAFVLVRDKSTEESRGIAFCEYVEPSAT 406
Query: 174 --AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
AI GLNGM LGDKKL VQ+ASVG +G
Sbjct: 407 DVAIQGLNGMDLGDKKLRVQKASVGVTQVAG 437
>gi|413920212|gb|AFW60144.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 502
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 117/259 (45%), Gaps = 68/259 (26%)
Query: 2 GVNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTED 61
G+ +L G AGQ VI P+ A TR ARR+YVG +P E
Sbjct: 172 GMFPNMLPFGVAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPSANEQ 219
Query: 62 EMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ 120
+ +FNQ M + G G+ VL IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 220 TVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGA 279
Query: 121 SLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL 169
+K+RRP DY QP+P + + AAV + AG + + P +IF+GGLP Y
Sbjct: 280 PVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTAGSNGGL--EGPDRIFVGGLPYYF 336
Query: 170 NE-----------------------------------------DQAIAGLNGMQLGDKKL 188
E D A A LNG+++GDK L
Sbjct: 337 TEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLTVTDIACAALNGIKMGDKTL 396
Query: 189 IVQRASVGAKNASGQQAPV 207
V+RA+ GA +Q +
Sbjct: 397 TVRRANQGASQPRPEQESI 415
>gi|212723502|ref|NP_001131562.1| uncharacterized protein LOC100192903 [Zea mays]
gi|194691860|gb|ACF80014.1| unknown [Zea mays]
gi|195646366|gb|ACG42651.1| splicing factor U2AF 65 kDa subunit [Zea mays]
gi|413920213|gb|AFW60145.1| Splicing factor U2AF subunit [Zea mays]
Length = 539
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 115/254 (45%), Gaps = 68/254 (26%)
Query: 7 VLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEF 66
+L G AGQ VI P+ A TR ARR+YVG +P E + +
Sbjct: 177 MLPFGVAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPSANEQTVAIY 224
Query: 67 FNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FNQ M + G G+ VL IN DK FAF+E RS++E + AMA DGI F+G +K+R
Sbjct: 225 FNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVR 284
Query: 126 RPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE--- 171
RP DY QP+P + + AAV + AG + + P +IF+GGLP Y E
Sbjct: 285 RPTDYNPSLAAALGPSQPSPNL-NLAAVGLTAGSNGGL--EGPDRIFVGGLPYYFTEAQV 341
Query: 172 --------------------------------------DQAIAGLNGMQLGDKKLIVQRA 193
D A A LNG+++GDK L V+RA
Sbjct: 342 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLTVTDIACAALNGIKMGDKTLTVRRA 401
Query: 194 SVGAKNASGQQAPV 207
+ GA +Q +
Sbjct: 402 NQGASQPRPEQESI 415
>gi|168026451|ref|XP_001765745.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682922|gb|EDQ69336.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 491
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 105/221 (47%), Gaps = 59/221 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +F+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 155 TRHARRVYVGGLPPMANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVEMR 214
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
+++E + AMA DGI F+G S+++RRP DY P+ T + AAV + G
Sbjct: 215 TVEEASNAMALDGIMFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGG 274
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
D P +IF+GGLP YL E
Sbjct: 275 A--DGPDRIFVGGLPYYLTEIQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAV 332
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D AIA LNG+++GDK L V+RAS ASGQ P Q V
Sbjct: 333 TDVAIAALNGLKMGDKTLSVRRAS-----ASGQPKPDQANV 368
>gi|413920211|gb|AFW60143.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 367
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 115/254 (45%), Gaps = 68/254 (26%)
Query: 7 VLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEF 66
+L G AGQ VI P+ A TR ARR+YVG +P E + +
Sbjct: 5 MLPFGVAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPSANEQTVAIY 52
Query: 67 FNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FNQ M + G G+ VL IN DK FAF+E RS++E + AMA DGI F+G +K+R
Sbjct: 53 FNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVR 112
Query: 126 RPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE--- 171
RP DY QP+P + + AAV + AG + + P +IF+GGLP Y E
Sbjct: 113 RPTDYNPSLAAALGPSQPSPNL-NLAAVGLTAGSNGGL--EGPDRIFVGGLPYYFTEAQV 169
Query: 172 --------------------------------------DQAIAGLNGMQLGDKKLIVQRA 193
D A A LNG+++GDK L V+RA
Sbjct: 170 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLTVTDIACAALNGIKMGDKTLTVRRA 229
Query: 194 SVGAKNASGQQAPV 207
+ GA +Q +
Sbjct: 230 NQGASQPRPEQESI 243
>gi|413920214|gb|AFW60146.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 536
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 117/259 (45%), Gaps = 68/259 (26%)
Query: 2 GVNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTED 61
G+ +L G AGQ VI P+ A TR ARR+YVG +P E
Sbjct: 172 GMFPNMLPFGVAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPSANEQ 219
Query: 62 EMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ 120
+ +FNQ M + G G+ VL IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 220 TVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGA 279
Query: 121 SLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL 169
+K+RRP DY QP+P + + AAV + AG + + P +IF+GGLP Y
Sbjct: 280 PVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTAGSNGGL--EGPDRIFVGGLPYYF 336
Query: 170 NE-----------------------------------------DQAIAGLNGMQLGDKKL 188
E D A A LNG+++GDK L
Sbjct: 337 TEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLTVTDIACAALNGIKMGDKTL 396
Query: 189 IVQRASVGAKNASGQQAPV 207
V+RA+ GA +Q +
Sbjct: 397 TVRRANQGASQPRPEQESI 415
>gi|302813365|ref|XP_002988368.1| hypothetical protein SELMODRAFT_235524 [Selaginella moellendorffii]
gi|300143770|gb|EFJ10458.1| hypothetical protein SELMODRAFT_235524 [Selaginella moellendorffii]
Length = 353
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 109/216 (50%), Gaps = 61/216 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR AR++YVG +P V E + FFNQ M ++ G G+ V+ IN +K FAF+E R
Sbjct: 19 TRHARQVYVGGLPGLVNEQTIATFFNQVMVNVGGNTAGPGDVVVNVYINQEKKFAFVEMR 78
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
+++E + AMA DGI+F+G S+++RRP DY QP+P + + AAV + G
Sbjct: 79 TVEEASNAMALDGISFQGVSVRVRRPSDYNPSVAANLGPSQPSPSL-NLAAVGLTPGAGG 137
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
V D P +IF+GGLP YL E
Sbjct: 138 GV--DGPDRIFVGGLPYYLTEPQIRELLESFGPLRGFDLVKDRESGNSKGYGFCVYQDPN 195
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQA 205
D A A LNG+++GD+ L V+RA+ A+GQQA
Sbjct: 196 VTDVACAALNGLKMGDRTLTVRRAT-----ANGQQA 226
>gi|320031290|gb|EFW13263.1| splicing factor u2af large subunit [Coccidioides posadasii str.
Silveira]
Length = 545
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 58/213 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+V N+ ++ED + +FFN + L+GL +G +P ++ Q++ D FA LEF+
Sbjct: 216 SRQAKRLFVYNLSPSLSEDSIAQFFN--LQLNGLNVVSGVDPCVSAQLSTDGTFALLEFK 273
Query: 102 SIDETTQAMAFDGINFK-----------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+ + T A+AFDG++ + Q L IRRP DY P TD++ GV+S
Sbjct: 274 TAADATVALAFDGVSMEPDDANGHTNGSSQGLSIRRPKDY-IVPSETDDSNRQ--EGVVS 330
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+KI + +P ++ E+Q
Sbjct: 331 NEVPDSPNKICVTNIPPFIQEEQVTMLLVSFGELKSFILVKDSGTDESRGIAFCEYVDPS 390
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGDK+L V RAS+GA A+G
Sbjct: 391 STNIAVEGLNGMELGDKRLKVTRASIGATQAAG 423
>gi|119189253|ref|XP_001245233.1| hypothetical protein CIMG_04674 [Coccidioides immitis RS]
gi|392868136|gb|EAS33879.2| U2 snRNP auxilliary factor, large subunit, splicing factor
[Coccidioides immitis RS]
Length = 545
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 58/213 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+V N+ ++ED + +FFN + L+GL +G +P ++ Q++ D FA LEF+
Sbjct: 216 SRQAKRLFVYNLSPSLSEDSIAQFFN--LQLNGLNVVSGVDPCVSAQLSTDGTFALLEFK 273
Query: 102 SIDETTQAMAFDGINFK-----------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+ + T A+AFDG++ + Q L IRRP DY P TD++ GV+S
Sbjct: 274 TAADATVALAFDGVSMEPDDANGHTNGSSQGLSIRRPKDY-IVPSETDDSNRQ--EGVVS 330
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+KI + +P ++ E+Q
Sbjct: 331 NEVPDSPNKICVTNIPPFIQEEQVTMLLVSFGELKSFVLVKDSGTDESRGIAFCEYVDPS 390
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGDK+L V RAS+GA A+G
Sbjct: 391 STNIAVEGLNGMELGDKRLKVTRASIGATQAAG 423
>gi|302795921|ref|XP_002979723.1| hypothetical protein SELMODRAFT_13030 [Selaginella moellendorffii]
gi|300152483|gb|EFJ19125.1| hypothetical protein SELMODRAFT_13030 [Selaginella moellendorffii]
Length = 360
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 109/216 (50%), Gaps = 61/216 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR AR++YVG +P V E + FFNQ M ++ G G+ V+ IN +K FAF+E R
Sbjct: 26 TRHARQVYVGGLPGLVNEQTIATFFNQVMVNVGGNTAGPGDVVVNVYINQEKKFAFVEMR 85
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
+++E + AMA DGI+F+G S+++RRP DY QP+P + + AAV + G
Sbjct: 86 TVEEASNAMALDGISFQGVSVRVRRPSDYNPSVAANLGPSQPSPSL-NLAAVGLTPGAGG 144
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
V D P +IF+GGLP YL E
Sbjct: 145 GV--DGPDRIFVGGLPYYLTEPQIRELLESFGPLRGFDLVKDRESGNSKGYGFCVYQDPN 202
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQA 205
D A A LNG+++GD+ L V+RA+ A+GQQA
Sbjct: 203 VTDVACAALNGLKMGDRTLTVRRAT-----ANGQQA 233
>gi|302816055|ref|XP_002989707.1| hypothetical protein SELMODRAFT_160385 [Selaginella moellendorffii]
gi|300142484|gb|EFJ09184.1| hypothetical protein SELMODRAFT_160385 [Selaginella moellendorffii]
Length = 421
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 104/221 (47%), Gaps = 56/221 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 59 TRHARRVYVGGLPPLANEQTIATFFSQVMSAIGGNTAGPGDAVVNVYINQEKKFAFVEMR 118
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
+++E + AMA DGI F+G S+++RRP DY P+ T + AAV + G
Sbjct: 119 TVEEASNAMALDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGG 178
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
D P +IF+GGLP YL E
Sbjct: 179 A--DGPDRIFVGGLPYYLTEGQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAV 236
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNG+++GDK L V+RA+ A SGQ P Q V
Sbjct: 237 TDVACAALNGLKMGDKTLTVRRAT--ASVHSGQPKPDQANV 275
>gi|156061663|ref|XP_001596754.1| hypothetical protein SS1G_02977 [Sclerotinia sclerotiorum 1980]
gi|154700378|gb|EDO00117.1| hypothetical protein SS1G_02977 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 518
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 107/220 (48%), Gaps = 60/220 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQ++RL V NIP E+ ++ FFN + L+GL G +P ++ Q++ D +FA LEF+
Sbjct: 190 SRQSKRLLVHNIPADTKEETLVGFFN--LQLNGLNVIEGSDPCISAQVSKDGSFALLEFK 247
Query: 102 SIDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGV 148
+ + T A+A DGI + Q L IRRP DY P VTD GV
Sbjct: 248 TQSDATVALALDGITMENNDHMVTGNGSADTQGLSIRRPKDY-IVPAVTDETPFE--PGV 304
Query: 149 ISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------------- 173
+S +VPD+ +KI + +P+YLN++Q
Sbjct: 305 VSNIVPDTQNKISVANIPHYLNDEQVTELLVSFGELKAFVLVKDSNTDESRGIAFCEYVD 364
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
A+ GLNGM+LGDK L VQRAS+G SG + V
Sbjct: 365 PAATDIAVEGLNGMELGDKHLKVQRASIGNTQVSGLEMSV 404
>gi|302820212|ref|XP_002991774.1| hypothetical protein SELMODRAFT_161898 [Selaginella moellendorffii]
gi|300140455|gb|EFJ07178.1| hypothetical protein SELMODRAFT_161898 [Selaginella moellendorffii]
Length = 420
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 104/221 (47%), Gaps = 56/221 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 59 TRHARRVYVGGLPPLANEQTIATFFSQVMSAIGGNTAGPGDAVVNVYINQEKKFAFVEMR 118
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
+++E + AMA DGI F+G S+++RRP DY P+ T + AAV + G
Sbjct: 119 TVEEASNAMALDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGG 178
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
D P +IF+GGLP YL E
Sbjct: 179 A--DGPDRIFVGGLPYYLTEGQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAV 236
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNG+++GDK L V+RA+ A SGQ P Q V
Sbjct: 237 TDVACAALNGLKMGDKTLTVRRAT--ASVHSGQPKPDQANV 275
>gi|303323229|ref|XP_003071606.1| splicing factor, putative [Coccidioides posadasii C735 delta SOWgp]
gi|240111308|gb|EER29461.1| splicing factor, putative [Coccidioides posadasii C735 delta SOWgp]
Length = 545
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 58/213 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+V N+ ++ED + +FFN + L+GL +G +P ++ Q++ D FA LEF+
Sbjct: 216 SRQAKRLFVYNLSPSLSEDSIAQFFN--LQLNGLNVVSGVDPCVSAQLSTDGTFALLEFK 273
Query: 102 SIDETTQAMAFDGINFK-----------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+ + T A+AFDG++ + Q L IRRP DY P TD++ GV+S
Sbjct: 274 TAADATVALAFDGVSMEPDDANGHTNGSSQGLSIRRPKDY-IVPSETDDSNRQ--EGVVS 330
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP KI + +P ++ E+Q
Sbjct: 331 NEVPDSPSKICVTNIPPFIQEEQVTMLLVSFGELKSFILVKDSGTDESRGIAFCEYVDPS 390
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGDK+L V RAS+GA A+G
Sbjct: 391 STNIAVEGLNGMELGDKRLKVTRASIGATQAAG 423
>gi|406867695|gb|EKD20733.1| U2 snRNP auxilliary factor [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 613
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 105/219 (47%), Gaps = 59/219 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL V N+P V E+ ++ FFN + L+GL G +P ++ QI+ DK FA LEF+
Sbjct: 266 SRQAKRLLVSNLPPTVNEEAIVNFFN--LQLNGLNVIEGSDPCVSAQISKDKTFALLEFK 323
Query: 102 SIDETTQAMAFDGINFKG------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
+ T A+A DGI + Q L IRRP DY P +TD AGVI
Sbjct: 324 QTSDATIALALDGITMEDEHMNGSATNGDTQGLSIRRPKDYI-VPTITDETPFE--AGVI 380
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
S VV D+ +KI I +P YL ++Q
Sbjct: 381 SNVVVDTQNKISISNIPLYLTDEQVTELLVSFGELKAFVLVKDNGTDESRGIAFCEYVDP 440
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
A+ GLNGM+LGDK L VQRAS+G SG + V
Sbjct: 441 VATDIAVEGLNGMELGDKHLKVQRASIGHTQVSGLEMSV 479
>gi|413920210|gb|AFW60142.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 364
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 104/218 (47%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 26 TRHARRVYVGGLPPSANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 85
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP+P + + AAV + AG S
Sbjct: 86 SVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTAG--S 142
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ P +IF+GGLP Y E
Sbjct: 143 NGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLT 202
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 203 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESI 240
>gi|154319442|ref|XP_001559038.1| hypothetical protein BC1G_02202 [Botryotinia fuckeliana B05.10]
Length = 596
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 107/220 (48%), Gaps = 60/220 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQ++RL V NIP E+ ++ FFN + L+GL G +P+++ Q++ D +FA LEF+
Sbjct: 265 SRQSKRLLVHNIPADTKEETIVSFFN--LQLNGLNVIEGSDPLISAQVSKDGSFALLEFK 322
Query: 102 SIDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGV 148
+ + T A+A DGI G + L IRRP DY P VTD GV
Sbjct: 323 TQSDATVALALDGITMDGNDHMETENGSADTRGLSIRRPKDYI-VPAVTDETPFE--PGV 379
Query: 149 ISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------------- 173
IS VV D+ +KI + +P+YLN++Q
Sbjct: 380 ISNVVADTQNKISVTNIPHYLNDEQVTELLVSFGELKAFVLVKDSNTDESRGIAFCEYVD 439
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
A+ GLNGM+LGDK L VQRAS+G SG + V
Sbjct: 440 PAATDIAVEGLNGMELGDKHLKVQRASIGNTQVSGLEMSV 479
>gi|347842431|emb|CCD57003.1| hypothetical protein [Botryotinia fuckeliana]
Length = 606
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 107/220 (48%), Gaps = 60/220 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQ++RL V NIP E+ ++ FFN + L+GL G +P+++ Q++ D +FA LEF+
Sbjct: 275 SRQSKRLLVHNIPADTKEETIVSFFN--LQLNGLNVIEGSDPLISAQVSKDGSFALLEFK 332
Query: 102 SIDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGV 148
+ + T A+A DGI G + L IRRP DY P VTD GV
Sbjct: 333 TQSDATVALALDGITMDGNDHMETGNGSADTRGLSIRRPKDYI-VPAVTDETPFE--PGV 389
Query: 149 ISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------------- 173
IS VV D+ +KI + +P+YLN++Q
Sbjct: 390 ISNVVADTQNKISVTNIPHYLNDEQVTELLVSFGELKAFVLVKDSNTDESRGIAFCEYVD 449
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
A+ GLNGM+LGDK L VQRAS+G SG + V
Sbjct: 450 PAATDIAVEGLNGMELGDKHLKVQRASIGNTQVSGLEMSV 489
>gi|168030966|ref|XP_001767993.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680835|gb|EDQ67268.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 56/226 (24%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFA 96
+G + TR ARR+YVG +P E + FF+Q M G A G+ V+ IN +K FA
Sbjct: 157 IGLSFTRHARRVYVGGLPPMANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINQEKRFA 216
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPA 146
F+E R+++E + AMA DGI ++G S+++RRP DY P+ T + AV +
Sbjct: 217 FVEMRTVEEASNAMALDGIVYEGVSVRVRRPSDYNPSMAATLGPSQPSSHLNLTAVGLTP 276
Query: 147 GVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------------------- 173
G + D P +IF+GGLP YL+E+Q
Sbjct: 277 GALGGA--DGPDRIFVGGLPYYLSEEQIMDLLSSFGHLRAFDLVKDRDTGNSKGYGFCVY 334
Query: 174 --------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
A A LNG+++GD+ L V+RAS A+ GQ P Q +
Sbjct: 335 QDPSVMDIACAALNGLKMGDRTLTVRRAS--ARLRFGQPKPDQSNI 378
>gi|425773483|gb|EKV11835.1| Splicing factor u2af large subunit [Penicillium digitatum Pd1]
Length = 585
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 105/204 (51%), Gaps = 48/204 (23%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQ++RL+V NIP GV+ D ++ FFN Q++ + + +P ++ Q++ DK FA LEF+
Sbjct: 270 SRQSKRLFVYNIPSGVSGDAVIAFFNLQLNGLNVVHSV-DPCISAQVSEDKTFALLEFKD 328
Query: 103 IDETTQAMAFDGINFK---GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
++ T A+AFDGI + L++RRP DY G +A+ V AGV+ VPDSP+K
Sbjct: 329 PNDATVALAFDGITMAESGDKGLEVRRPKDYIVPDG---SASQPVQAGVVLNEVPDSPNK 385
Query: 160 IFIGGLPNYLNEDQ-----------------------------------------AIAGL 178
I I +P Y+NE+ A+ GL
Sbjct: 386 ICISNIPTYINEEAIIMLLKSFGDLKSFVLVKDAATEESRGIAFYEYVDPNNTALAVEGL 445
Query: 179 NGMQLGDKKLIVQRASVGAKNASG 202
NGM+L D+ L RAS+G ASG
Sbjct: 446 NGMELVDRHLKFVRASIGTTQASG 469
>gi|425775779|gb|EKV14031.1| Splicing factor u2af large subunit [Penicillium digitatum PHI26]
Length = 585
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 105/204 (51%), Gaps = 48/204 (23%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQ++RL+V NIP GV+ D ++ FFN Q++ + + +P ++ Q++ DK FA LEF+
Sbjct: 270 SRQSKRLFVYNIPSGVSGDAVIAFFNLQLNGLNVVHSV-DPCISAQVSEDKTFALLEFKD 328
Query: 103 IDETTQAMAFDGINFK---GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
++ T A+AFDGI + L++RRP DY G +A+ V AGV+ VPDSP+K
Sbjct: 329 PNDATVALAFDGITMAESGDKGLEVRRPKDYIVPDG---SASQPVQAGVVLNEVPDSPNK 385
Query: 160 IFIGGLPNYLNEDQ-----------------------------------------AIAGL 178
I I +P Y+NE+ A+ GL
Sbjct: 386 ICISNIPTYINEEAIIMLLKSFGDLKSFVLVKDAATEESRGIAFYEYVDPNNTALAVEGL 445
Query: 179 NGMQLGDKKLIVQRASVGAKNASG 202
NGM+L D+ L RAS+G ASG
Sbjct: 446 NGMELVDRHLKFVRASIGTTQASG 469
>gi|108864608|gb|ABG22562.1| U2 snRNP auxilliary factor, large subunit, splicing factor family
protein, expressed [Oryza sativa Japonica Group]
Length = 550
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 104/222 (46%), Gaps = 56/222 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 234 TRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMR 293
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP P + + AAV + G
Sbjct: 294 SVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNL-NLAAVGLTPGSAG 352
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 353 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 410
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNG+++GDK L V+RA+ GA +Q + + V
Sbjct: 411 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHV 452
>gi|115486373|ref|NP_001068330.1| Os11g0636900 [Oryza sativa Japonica Group]
gi|122248736|sp|Q2R0Q1.2|U2A2A_ORYSJ RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=U2 auxiliary factor 65 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit A; Short=U2 snRNP auxiliary factor large
subunit A
gi|108864607|gb|ABA94914.2| U2 snRNP auxilliary factor, large subunit, splicing factor family
protein, expressed [Oryza sativa Japonica Group]
gi|113645552|dbj|BAF28693.1| Os11g0636900 [Oryza sativa Japonica Group]
gi|222616290|gb|EEE52422.1| hypothetical protein OsJ_34542 [Oryza sativa Japonica Group]
Length = 574
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 104/222 (46%), Gaps = 56/222 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 234 TRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMR 293
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP P + + AAV + G
Sbjct: 294 SVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNL-NLAAVGLTPGSAG 352
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 353 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 410
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNG+++GDK L V+RA+ GA +Q + + V
Sbjct: 411 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHV 452
>gi|310793965|gb|EFQ29426.1| U2 snRNP auxilliary factor [Glomerella graminicola M1.001]
Length = 549
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 105/211 (49%), Gaps = 55/211 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL + N+P TE+ + FFN Q++ + ++ +P +CQ++ D +FA +EFR+
Sbjct: 221 SRQAKRLLINNLPPSATEEGIQNFFNLQLNGLNIIEST-DPCTSCQVSKDHSFAVVEFRN 279
Query: 103 IDETTQAMAFDGINFKG----------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
E T A+A DGI+ + Q L IRRP DY P V D+ V GV+S V
Sbjct: 280 ASEATVALALDGISMEAEDATNGAAADQGLVIRRPKDY-IVPAVVDD--VPYEPGVVSNV 336
Query: 153 VPDSPHKIFIGGLPNYLNEDQ--------------------------------------- 173
V D+ +KI + +P YL+E+Q
Sbjct: 337 VVDTHNKISVANMPVYLSEEQVSELLVSFGELKAFVLVRDKSTEESRGIAFCEYVDPAAT 396
Query: 174 --AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
AI GLNGM LGDK+L VQ+ASVG +G
Sbjct: 397 DVAIQGLNGMDLGDKRLKVQKASVGVTQVAG 427
>gi|218186084|gb|EEC68511.1| hypothetical protein OsI_36782 [Oryza sativa Indica Group]
Length = 574
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 104/222 (46%), Gaps = 56/222 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 234 TRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMR 293
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP P + + AAV + G
Sbjct: 294 SVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNL-NLAAVGLTPGSAG 352
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 353 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 410
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNG+++GDK L V+RA+ GA +Q + + V
Sbjct: 411 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHV 452
>gi|115486631|ref|NP_001068459.1| Os11g0682300 [Oryza sativa Japonica Group]
gi|113645681|dbj|BAF28822.1| Os11g0682300, partial [Oryza sativa Japonica Group]
Length = 378
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 40 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 99
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP+P + + AAV + G
Sbjct: 100 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTPGSAG 158
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 159 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 216
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 217 VTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESI 254
>gi|108864648|gb|ABG22574.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
Length = 366
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 28 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 87
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP+P + + AAV + G
Sbjct: 88 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTPGSAG 146
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 147 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 204
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 205 VTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESI 242
>gi|218191627|gb|EEC74054.1| hypothetical protein OsI_09051 [Oryza sativa Indica Group]
Length = 548
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 210 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 269
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP+P + + AAV + G
Sbjct: 270 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTPGSAG 328
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 329 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 386
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 387 VTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESI 424
>gi|122232770|sp|Q2QZL4.2|U2A2B_ORYSJ RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=U2 auxiliary factor 65 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit B; Short=U2 snRNP auxiliary factor large
subunit B
gi|108864649|gb|ABA95281.2| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|222616418|gb|EEE52550.1| hypothetical protein OsJ_34796 [Oryza sativa Japonica Group]
Length = 548
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 210 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 269
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP+P + + AAV + G
Sbjct: 270 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTPGSAG 328
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 329 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 386
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 387 VTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESI 424
>gi|29367529|gb|AAO72620.1| putative U2 snRNP auxiliary factor [Oryza sativa Japonica Group]
Length = 331
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 104/222 (46%), Gaps = 56/222 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 29 TRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMR 88
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP P + + AAV + G
Sbjct: 89 SVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNL-NLAAVGLTPGSAG 147
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 148 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 205
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNG+++GDK L V+RA+ GA +Q + + V
Sbjct: 206 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHV 247
>gi|346978171|gb|EGY21623.1| splicing factor U2AF 50 kDa subunit [Verticillium dahliae VdLs.17]
Length = 589
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 54/210 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL V +P TED + FFN Q++ + ++ +P ++CQ++ DK+F +EFR+
Sbjct: 237 SRQAKRLLVSKLPSSATEDSVASFFNLQLNGLNVIEST-DPCVSCQLSNDKSFCVVEFRN 295
Query: 103 IDETTQAMAFDGINFK---------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
E T A+A DGI+ + G+ L+IRRP DY P VT+ + GV+S+ V
Sbjct: 296 ASEATVALALDGISMEADSATDGAAGRGLEIRRPKDY-IVPAVTEE--LPYEPGVVSSNV 352
Query: 154 PDSPHKIFIGGLPNYLNEDQ---------------------------------------- 173
D+P+K+ I G P YL E+Q
Sbjct: 353 VDTPNKLSITGFPPYLTEEQVTELLTSFGELKAFVLVRDRHTDESRGFVFCEYVDSAAND 412
Query: 174 -AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
AI GL+GM LG+ KL +Q+AS+G +G
Sbjct: 413 VAIQGLSGMDLGNSKLKIQKASIGVTQVAG 442
>gi|449441167|ref|XP_004138355.1| PREDICTED: splicing factor U2af large subunit B-like [Cucumis
sativus]
Length = 587
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 117/265 (44%), Gaps = 66/265 (24%)
Query: 10 TGAAGQIPANV---------IIPETTVAAAAAAAV-PVVGST--ITRQARRLYVGNIPFG 57
T AAGQIP + P T A V PV T TR ARR+YVG +P
Sbjct: 205 TAAAGQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPT 264
Query: 58 VTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 116
E + FF+Q M + G G+ V+ IN +K FAF+E RS++E + AMA DGI
Sbjct: 265 ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII 324
Query: 117 FKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
F+G +K+RRP DY P+ T + AAV + G + + P +IF+GGLP
Sbjct: 325 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLP 382
Query: 167 NYLNE-----------------------------------------DQAIAGLNGMQLGD 185
Y E D A A LNG+++GD
Sbjct: 383 YYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 442
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQ 210
K L V+RA+ GA +Q V +
Sbjct: 443 KTLTVRRANQGANQPKPEQESVLLH 467
>gi|168056046|ref|XP_001780033.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668531|gb|EDQ55136.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 536
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 105/222 (47%), Gaps = 57/222 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +F+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 193 TRHARRVYVGGLPPMANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVEMR 252
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
+++E + AM+ DGI F+G S+++RRP DY P+ T + AAV + G
Sbjct: 253 TVEEASNAMSLDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGG 312
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
D P +IF+GGLP YL E
Sbjct: 313 A--DGPDRIFVGGLPYYLTEPQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPSV 370
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D AIA LNG+++GDK L V+RAS A+ GQ P Q V
Sbjct: 371 TTDVAIAALNGLKMGDKTLSVRRAS--ARYGIGQPKPDQANV 410
>gi|449496757|ref|XP_004160219.1| PREDICTED: splicing factor U2af large subunit B-like [Cucumis
sativus]
Length = 587
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 117/265 (44%), Gaps = 66/265 (24%)
Query: 10 TGAAGQIPANV---------IIPETTVAAAAAAAV-PVVGST--ITRQARRLYVGNIPFG 57
T AAGQIP + P T A V PV T TR ARR+YVG +P
Sbjct: 205 TAAAGQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQATRHARRVYVGGLPPT 264
Query: 58 VTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 116
E + FF+Q M + G G+ V+ IN +K FAF+E RS++E + AMA DGI
Sbjct: 265 ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII 324
Query: 117 FKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
F+G +K+RRP DY P+ T + AAV + G + + P +IF+GGLP
Sbjct: 325 FEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLP 382
Query: 167 NYLNE-----------------------------------------DQAIAGLNGMQLGD 185
Y E D A A LNG+++GD
Sbjct: 383 YYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGD 442
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQ 210
K L V+RA+ GA +Q V +
Sbjct: 443 KTLTVRRANQGANQPKPEQESVLLH 467
>gi|296420976|ref|XP_002840043.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636253|emb|CAZ84234.1| unnamed protein product [Tuber melanosporum]
Length = 540
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 43/211 (20%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + T +RQA+RL + NIP G E+ +++FFNQ + + +P+ + Q++
Sbjct: 210 ATASTLKPTNSRQAKRLLMSNIPPGTDEESLLQFFNQTLSSLNVTTGGPDPITSVQLSGS 269
Query: 93 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
K LEF++ ++ T +A GI F G +++I+RP DY P V ++ P GVIS+
Sbjct: 270 KILGLLEFKNTNDATVCLALSGIEFNGGNIEIKRPRDYI-VPIVPEDHRHQEP-GVISSD 327
Query: 153 VPDSPHKIFIGGLPNYLNEDQ--------------------------------------- 173
VPD+P+KI I +P YL ++Q
Sbjct: 328 VPDTPNKILISEIPEYLQDEQVIELLKSFGDLKAFVLVKDVTDETSKGIAFCEYLDPGTT 387
Query: 174 --AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLN M++ D L V+RAS+G K A+G
Sbjct: 388 EIAVEGLNAMEIADNTLRVRRASIGMKQAAG 418
>gi|156070781|gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata]
Length = 557
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 118/264 (44%), Gaps = 65/264 (24%)
Query: 10 TGAAGQIPA---------NVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGV 58
T AGQ+P + + P T+ A +P+ T TR ARR+YVG +P
Sbjct: 178 TDTAGQVPGASPSIPGMFSNMFPLTSGQFGALPVMPIQAMTQQATRHARRVYVGGLPPSA 237
Query: 59 TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
E + FF+ M+ + G G+ V+ IN +K FAF+E RS++E + AMA DG+ F
Sbjct: 238 NEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIF 297
Query: 118 KGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPN 167
+G +K+RRP DY P+ T + AAV + G + + P +IF+GGLP
Sbjct: 298 EGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGL--EGPDRIFVGGLPY 355
Query: 168 YLNEDQ-----------------------------------------AIAGLNGMQLGDK 186
Y E Q A A LNG+++GDK
Sbjct: 356 YFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 415
Query: 187 KLIVQRASVGAKNASGQQAPVQIQ 210
L V+RA+ G + +Q V +
Sbjct: 416 TLTVRRANQGTPQPNPEQESVLLH 439
>gi|115400045|ref|XP_001215611.1| hypothetical protein ATEG_06433 [Aspergillus terreus NIH2624]
gi|114191277|gb|EAU32977.1| hypothetical protein ATEG_06433 [Aspergillus terreus NIH2624]
Length = 413
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 61/231 (26%)
Query: 25 TTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPV 84
TT +A AA+ P + +RQA+RL+V NIP VT + ++ FFN Q++ + Q+ +P
Sbjct: 74 TTGSADAASLKP----SHSRQAKRLFVYNIPPNVTGEALLSFFNLQLNGLNVVQSV-DPC 128
Query: 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINF----------KGQ--SLKIRRPHDYQP 132
++ Q++ D +FA LEF+S +E T A+AFDGI KG+ L++RRP DY
Sbjct: 129 ISAQVSDDHSFALLEFKSPNEATVALAFDGITMDEHASMDGAGKGEVKGLEVRRPKDYIV 188
Query: 133 TPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------------------- 173
G D GV+ VPDSP+KI + +P Y+ E+
Sbjct: 189 PNGSADQ---EYQEGVLLNEVPDSPNKICVSNIPQYIQEEAVIMLLKSFGELKSFVLVKD 245
Query: 174 ----------------------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM++GD+ L V RAS+G A+G
Sbjct: 246 ASTEESRGIAFCEYADPTATSIAVEGLNGMEIGDRPLKVVRASIGMTQAAG 296
>gi|75338884|sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa
subunit B; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit B;
Short=U2 snRNP auxiliary factor large subunit B
gi|3850821|emb|CAA77135.1| U2 snRNP auxiliary factor, large subunit [Nicotiana
plumbaginifolia]
Length = 573
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 117/264 (44%), Gaps = 65/264 (24%)
Query: 10 TGAAGQIPA-NVIIPET-----TVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGV 58
T AAGQ+P N IP +A+ A+PV+ TR ARR+YVG +P
Sbjct: 191 TAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHA 250
Query: 59 TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
E + FF+ M + G G+ V+ IN +K FAF+E RS++E + AMA DGI F
Sbjct: 251 NEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIF 310
Query: 118 KGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPN 167
+G K+RRP DY P+ T + AAV + G + + P +IF+GGLP
Sbjct: 311 EGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGL--EGPDRIFVGGLPY 368
Query: 168 YLNE-----------------------------------------DQAIAGLNGMQLGDK 186
Y E D A A LNG+++GDK
Sbjct: 369 YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 428
Query: 187 KLIVQRASVGAKNASGQQAPVQIQ 210
L V+RA+ G +Q V +
Sbjct: 429 TLTVRRANQGTTQPKPEQESVLLH 452
>gi|75338883|sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa
subunit A; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit A;
Short=U2 snRNP auxiliary factor large subunit A
gi|3850823|emb|CAA77136.1| U2 snRNP auxiliary factor, large subunit [Nicotiana
plumbaginifolia]
Length = 555
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 118/265 (44%), Gaps = 67/265 (25%)
Query: 10 TGAAGQIPA---------NVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGV 58
T AAGQ+P + + P + A +PV T TR ARR+YVG +P
Sbjct: 173 TDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTA 232
Query: 59 TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
E + FF+ M+ + G G+ V+ IN +K FAF+E RS++E + AMA DG+ F
Sbjct: 233 NEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIF 292
Query: 118 KGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
+G +K+RRP DY QP+P + A + P S+ + P +IF+GGLP
Sbjct: 293 EGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPG---SSGGLEGPDRIFVGGLP 349
Query: 167 NYLNEDQ-----------------------------------------AIAGLNGMQLGD 185
Y E Q A A LNG+++GD
Sbjct: 350 YYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGD 409
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQ 210
K L V+RA+ G + +Q V +
Sbjct: 410 KTLTVRRANQGTTQPNPEQESVLLH 434
>gi|397633851|gb|EJK71162.1| hypothetical protein THAOC_07424, partial [Thalassiosira oceanica]
Length = 449
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 30/169 (17%)
Query: 36 PVVGS------TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLS--------GLAQA-- 79
PV GS TR ARRLY+GNIP ++E E+ FF + + S AQ
Sbjct: 222 PVAGSFANMNPNQTRHARRLYIGNIP-DISETEIHSFFRKTIEKSLIMNRDDKNYAQLQE 280
Query: 80 ---AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ-SLKIRRPHDY----- 130
A +P+++ IN ++ FAF+EFR++D TT ++ DGI+ +G+ +K++RP+DY
Sbjct: 281 EYIANDPIVSVYINRERRFAFIEFRTMDITTACLSLDGIDVEGRGKVKVKRPNDYNASLA 340
Query: 131 -QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGL 178
Q + GV+ + A G++S+ VPD P+KIFIGGLP +L E Q + L
Sbjct: 341 PQTSNGVSLDTA---KLGLVSSTVPDGPNKIFIGGLPYHLTESQVLELL 386
>gi|452841884|gb|EME43820.1| hypothetical protein DOTSEDRAFT_71600 [Dothistroma septosporum
NZE10]
Length = 433
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 109/222 (49%), Gaps = 62/222 (27%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLE 99
+ RQ++RL + NIP TED +M+FFN + L+GL G +P ++ Q++ DK +A LE
Sbjct: 99 STARQSKRLLIYNIPASATEDTIMDFFN--LQLNGLNVTRGADPCISAQLSQDKAYALLE 156
Query: 100 FRSIDETTQAMAFDGINFK---------------GQSLKIRRPHDYQPTPGVTDNAAVAV 144
F++ ++ T AMAFDGIN + + L I+RP DY P VTD
Sbjct: 157 FKTPEDATNAMAFDGINMEPEAMVTSGNEDENGGARGLDIKRPKDYI-VPVVTD--GTEN 213
Query: 145 PAGVISTVVPDSPHKIFIGGLPNYLNEDQ------------------------------- 173
AGV+S VVPD+ +KI I +P Y++E+Q
Sbjct: 214 DAGVLSNVVPDTQNKISITNIPAYVDEEQTMELLNSFGELKNFVLVKDASTEESRGIAFC 273
Query: 174 ----------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQA 205
A+ L+GM LGD + V+ AS+G + SG+ +
Sbjct: 274 EYKDPNSTKVAVESLHGMTLGDAAMKVRLASIGIQQVSGEMS 315
>gi|145344032|ref|XP_001416543.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576769|gb|ABO94836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 291
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 106/227 (46%), Gaps = 60/227 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG IP E ++ FFN + + G A G PV+ IN++K FAF+EFR
Sbjct: 5 TRHARRIYVGGIPLTTNEADVNAFFNNALLAVGGTNGAEGQPVVNVYINVEKKFAFVEFR 64
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---------PGVTDN-AAVAVP------ 145
S++E + A+A DGI G ++IRRP+DY P+ P N AA+ +
Sbjct: 65 SVEEASNALALDGIVLDGVPVRIRRPNDYNPSLAHDLGPSMPNPALNLAAIGLDPSALQR 124
Query: 146 AGVISTVVPDSPHKIFIGGLPNYLNE---------------------------------- 171
AGV ++ + +IFIGGLP +L+E
Sbjct: 125 AGVGGNLLHEHEDRIFIGGLPYFLDEAQIRELLEAFGPIRQFDLVRDKETGNSKGYGFVV 184
Query: 172 -------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A GLNGM +GDK L V+RA NA G P + V
Sbjct: 185 YEDVSVTDIACQGLNGMTMGDKTLTVRRAE--QSNAPGGVQPGMMNV 229
>gi|356517814|ref|XP_003527581.1| PREDICTED: splicing factor U2af large subunit A-like [Glycine max]
Length = 605
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 111/247 (44%), Gaps = 61/247 (24%)
Query: 10 TGAAGQIPANV--IIPETTVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGVTEDE 62
TGA IP + P T +A+PV+ TR ARR+YVG +P E
Sbjct: 225 TGANPTIPGMFPNMFPLATNQMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQS 284
Query: 63 MMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121
+ FF+Q M + G G+ V+ IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 285 VATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAP 344
Query: 122 LKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE 171
+K+RRP DY P+ T + AV + G + D P +IF+GGLP Y E
Sbjct: 345 VKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGL--DGPDRIFVGGLPYYFTE 402
Query: 172 DQ-----------------------------------------AIAGLNGMQLGDKKLIV 190
Q A A LNG+++GDK L V
Sbjct: 403 TQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTV 462
Query: 191 QRASVGA 197
+RA+ GA
Sbjct: 463 RRANQGA 469
>gi|156070776|gb|ABU45190.1| unknown [Capsicum frutescens]
Length = 551
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 120/264 (45%), Gaps = 65/264 (24%)
Query: 10 TGAAGQIP-ANVIIPET-----TVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGV 58
T GQ+P AN IP +AA A+P++ TR ARR+YVG +P
Sbjct: 169 TDVTGQVPGANPSIPGMFSNMFPLAAGQFGALPIMPVQAMTQQATRHARRVYVGGLPPTA 228
Query: 59 TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
E + FF+ M+ + G G+ V+ IN +K FAF+E RS++E + AMA DG+ F
Sbjct: 229 NEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIF 288
Query: 118 KGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPN 167
+G +K+RRP DY P+ T + AAV + G S+ + P +IF+GGLP
Sbjct: 289 EGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPG--SSGGLEGPDRIFVGGLPY 346
Query: 168 YLNEDQ-----------------------------------------AIAGLNGMQLGDK 186
Y E Q A A LNG+++GDK
Sbjct: 347 YFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 406
Query: 187 KLIVQRASVGAKNASGQQAPVQIQ 210
L V+RA+ G + +Q V +
Sbjct: 407 TLTVRRANQGTNQPNPEQESVLLH 430
>gi|356509477|ref|XP_003523474.1| PREDICTED: splicing factor U2af large subunit B-like [Glycine max]
Length = 600
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 111/247 (44%), Gaps = 61/247 (24%)
Query: 10 TGAAGQIPANV--IIPETTVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGVTEDE 62
TGA IP + P T +A+PV+ TR ARR+YVG +P E
Sbjct: 220 TGANPTIPGMFPNMFPLATSQMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQS 279
Query: 63 MMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121
+ FF+Q M + G G+ V+ IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 280 VATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAP 339
Query: 122 LKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE 171
+K+RRP DY P+ T + AV + G + D P ++F+GGLP Y E
Sbjct: 340 VKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGL--DGPDRVFVGGLPYYFTE 397
Query: 172 DQ-----------------------------------------AIAGLNGMQLGDKKLIV 190
Q A A LNG+++GDK L V
Sbjct: 398 TQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTV 457
Query: 191 QRASVGA 197
+RA+ GA
Sbjct: 458 RRANQGA 464
>gi|357156009|ref|XP_003577312.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
distachyon]
Length = 576
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 99/221 (44%), Gaps = 56/221 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 237 TRHARRVYVGGLPPTANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 296
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP P + A P
Sbjct: 297 SVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLTPGSAGG 356
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
PD +IF+GGLP Y E
Sbjct: 357 LEGPD---RIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 413
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
D A A LNG+++GDK L V+RA+ GA +Q + +Q
Sbjct: 414 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQETILMQ 454
>gi|255931767|ref|XP_002557440.1| Pc12g05960 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582059|emb|CAP80223.1| Pc12g05960 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 554
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 48/204 (23%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQ++RL+V NIP GV+ D ++ FFN Q++ + ++ +P ++ Q++ DK FA LEF+
Sbjct: 239 SRQSKRLFVYNIPPGVSGDAVIAFFNLQLNGLNVIRSV-DPCISAQVSEDKTFALLEFKD 297
Query: 103 IDETTQAMAFDGINFK---GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
++ T A+A DGI + L++RRP DY G +AA V GV+ VPDSP+K
Sbjct: 298 PNDATVALALDGITMPESGDKGLEVRRPKDYIVPDG---SAAQPVQPGVVLNEVPDSPNK 354
Query: 160 IFIGGLPNYLNEDQ-----------------------------------------AIAGL 178
I I +P Y+NE+ A+ GL
Sbjct: 355 ICISNIPTYINEEAIIMLLKSFGDLKSFILVKDAATEESRGIAFYEYVDPNNTALAVEGL 414
Query: 179 NGMQLGDKKLIVQRASVGAKNASG 202
NGM+L D++L RAS+G A+G
Sbjct: 415 NGMELADRRLKFVRASIGTTQATG 438
>gi|299470773|emb|CBN79819.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 636
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 100/209 (47%), Gaps = 50/209 (23%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +P + TR ARRLY+G P TE+EM FFN+ ++ + G V + ++ +
Sbjct: 233 ARLPGASNQQTRHARRLYIGGCP-KTTEEEMSSFFNEVINRALEYPIDGGAVASVYVSQE 291
Query: 93 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA------ 146
K FAFLE ++++ T + DGI +K LK+RRP DY P + A+ +P
Sbjct: 292 KAFAFLELKTMELATSVLELDGIVYKETQLKMRRPSDYNPQ--LVPAASGPIPKLNLSVL 349
Query: 147 GVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------------------- 173
G+IS+ VPDS +K+FIGGLP L EDQ
Sbjct: 350 GIISSTVPDSDNKVFIGGLPYNLTEDQVRELLSAFGPLKSFHLVRDPGSPTSKGYGFCEY 409
Query: 174 --------AIAGLNGMQLGDKKLIVQRAS 194
A GL+GM LGDK L V+ A+
Sbjct: 410 LNAGVTAIACEGLHGMTLGDKTLTVRPAT 438
>gi|413920348|gb|AFW60280.1| hypothetical protein ZEAMMB73_339264 [Zea mays]
Length = 549
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 110/249 (44%), Gaps = 68/249 (27%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQ VI P+ A TR ARR+YVG +P E + FFN M
Sbjct: 237 AAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPTANEQTVAIFFNGVM 284
Query: 72 H-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ G G+ VL IN DK FAF+E RS++E + AMA DGI F+G +K+RRP DY
Sbjct: 285 AAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDY 344
Query: 131 -----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------- 171
QP P + + AAV + G + + P +IF+GGLP Y E
Sbjct: 345 NPSLAAALGPSQPNPNL-NLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFTEAQVRELLE 401
Query: 172 ---------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK 198
D A A LNG+++GDK L V+RA+ GA
Sbjct: 402 SFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAS 461
Query: 199 NASGQQAPV 207
+Q +
Sbjct: 462 QPRPEQESI 470
>gi|302656965|ref|XP_003020217.1| hypothetical protein TRV_05722 [Trichophyton verrucosum HKI 0517]
gi|291184026|gb|EFE39599.1| hypothetical protein TRV_05722 [Trichophyton verrucosum HKI 0517]
Length = 486
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 64/233 (27%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLA 86
AA+ ++ ++ + +RQ++RL+ NIP VTED + +FFN + L+GL +G +P +
Sbjct: 146 AASGSSNNTLLKPSNSRQSKRLFAHNIPPNVTEDTLQQFFN--LQLNGLNVISGVDPCQS 203
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFK---------GQS------LKIRRPHDY- 130
QI+ D FA LEF + + T A+AFDGI + G+S L I RP DY
Sbjct: 204 VQISKDGKFALLEFNTAADATVALAFDGITMEEHEANRESNGESNGDVKGLTIVRPKDYI 263
Query: 131 QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------- 173
P P TD GV+S+ VPDSP+KI + +P ++ EDQ
Sbjct: 264 VPIP--TDEEPRQ--EGVVSSNVPDSPNKICVSNIPPFIQEDQVTMLLVSFGELKSFVLV 319
Query: 174 ------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD++L V RAS+G A+G
Sbjct: 320 KDVGTDESRGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQAAG 372
>gi|156070797|gb|ABU45209.1| unknown [Solanum bulbocastanum]
Length = 558
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 120/265 (45%), Gaps = 66/265 (24%)
Query: 10 TGAAGQIPA--NVIIPET-----TVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFG 57
T AGQ+P N IP +AA A+P++ TR ARR+YVG +P
Sbjct: 175 TDVAGQVPGTTNPSIPGMFSNMFPLAAGQFGALPIMPVQAMTQQATRHARRVYVGGLPPT 234
Query: 58 VTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 116
E + FF+ M+ + G G+ V+ IN +K FAF+E RS++E + AMA DG+
Sbjct: 235 ANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVV 294
Query: 117 FKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
F+G +K+RRP DY P+ T + AAV + G S+ + P +IF+GGLP
Sbjct: 295 FEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPG--SSGGLEGPDRIFVGGLP 352
Query: 167 NYLNEDQ-----------------------------------------AIAGLNGMQLGD 185
Y E Q A A LNG+++GD
Sbjct: 353 YYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGD 412
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQ 210
K L V+RA+ G + +Q V +
Sbjct: 413 KTLTVRRANQGTTQPNPEQESVLLH 437
>gi|223950169|gb|ACN29168.1| unknown [Zea mays]
gi|413920349|gb|AFW60281.1| splicing factor U2AF subunit [Zea mays]
Length = 594
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 110/249 (44%), Gaps = 68/249 (27%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQ VI P+ A TR ARR+YVG +P E + FFN M
Sbjct: 237 AAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPTANEQTVAIFFNGVM 284
Query: 72 H-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ G G+ VL IN DK FAF+E RS++E + AMA DGI F+G +K+RRP DY
Sbjct: 285 AAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDY 344
Query: 131 -----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------- 171
QP P + + AAV + G + + P +IF+GGLP Y E
Sbjct: 345 NPSLAAALGPSQPNPNL-NLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFTEAQVRELLE 401
Query: 172 ---------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK 198
D A A LNG+++GDK L V+RA+ GA
Sbjct: 402 SFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAS 461
Query: 199 NASGQQAPV 207
+Q +
Sbjct: 462 QPRPEQESI 470
>gi|338762830|gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]
Length = 570
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 112/257 (43%), Gaps = 58/257 (22%)
Query: 10 TGAA----GQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
TGAA G P +P + A V + TR ARR+YVG +P E +
Sbjct: 196 TGAAPAVPGVFPNMFSLPTGQLGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVAT 255
Query: 66 FFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FF+ M + G G+ V+ IN +K FAF+E RS++E + AMA DGI F+G +K+
Sbjct: 256 FFSHVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 315
Query: 125 RRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ- 173
RRP DY P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 316 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFTEGQI 373
Query: 174 ----------------------------------------AIAGLNGMQLGDKKLIVQRA 193
A A LNG+++GDK L V+RA
Sbjct: 374 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 433
Query: 194 SVGAKNASGQQAPVQIQ 210
+ G +Q V +
Sbjct: 434 NQGVTQPKPEQESVLLH 450
>gi|302511201|ref|XP_003017552.1| hypothetical protein ARB_04434 [Arthroderma benhamiae CBS 112371]
gi|291181123|gb|EFE36907.1| hypothetical protein ARB_04434 [Arthroderma benhamiae CBS 112371]
Length = 501
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 64/233 (27%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLA 86
AA+ ++ ++ + +RQ++RL+ NIP VTED + +FFN + L+GL +G +P +
Sbjct: 146 AASGSSNNTLLKPSNSRQSKRLFAHNIPPNVTEDTLQQFFN--LQLNGLNVISGVDPCQS 203
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFK---------GQS------LKIRRPHDY- 130
QI+ D FA LEF + + T A+AFDGI + G+S L I RP DY
Sbjct: 204 VQISKDGKFALLEFNTAADATVALAFDGITMEEHEANRESNGESNGEVKGLTIVRPKDYI 263
Query: 131 QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------- 173
P P TD GV+S+ VPDSP+KI + +P ++ EDQ
Sbjct: 264 VPIP--TDEEPRQ--EGVVSSNVPDSPNKICVSNIPPFIQEDQVTMLLVSFGELKSFVLV 319
Query: 174 ------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD++L V RAS+G A+G
Sbjct: 320 KDVGTDESRGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQAAG 372
>gi|188998293|gb|ACD67872.1| U2 snRNP auxiliary factor large subunit [Solanum melongena]
Length = 554
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 120/265 (45%), Gaps = 66/265 (24%)
Query: 10 TGAAGQIPA--NVIIPET-----TVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFG 57
T AGQ+P N IP VAA A+PV+ TR ARR+YVG +P
Sbjct: 169 TDVAGQVPGITNPSIPGMFSNMFPVAAGQFGALPVMPVQAMTQQATRHARRVYVGGLPPT 228
Query: 58 VTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 116
E + FF+ M+ + G G+ V+ IN +K FAF+E RS++E + AMA DG+
Sbjct: 229 ANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVI 288
Query: 117 FKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
F+G +K+RRP DY P+ T + AAV + G S+ + P +IF+GGLP
Sbjct: 289 FEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPG--SSGGLEGPDRIFVGGLP 346
Query: 167 NYLNEDQ-----------------------------------------AIAGLNGMQLGD 185
Y E Q A A LNG+++GD
Sbjct: 347 YYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGD 406
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQ 210
K L V+RA+ G + +Q V +
Sbjct: 407 KTLTVRRANQGITQPNPEQESVLLH 431
>gi|388520789|gb|AFK48456.1| unknown [Lotus japonicus]
Length = 527
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 57/255 (22%)
Query: 2 GVNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTED 61
G+N+ LN G A Q + I + + A + V + TR ARR+Y+G +P E
Sbjct: 137 GINH--LNQGTA-QNFSLFGISQPQIGALSLMQVQPMTQQATRHARRVYIGGLPPLTNEQ 193
Query: 62 EMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ 120
+ FF+ M + G + AG+ V+ IN +K FAFLE R+++E + AM+ DGI F+G
Sbjct: 194 SIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRTVEEASNAMSLDGIVFEGV 253
Query: 121 SLKIRRPHDYQPT---------PGVTDN-AAVAVPAGVISTVVPDSPHKIFIGGLPNYLN 170
S+++RRP DY PT P N +AV + G I D +IF+GGLP Y
Sbjct: 254 SVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVGLSGGTIGGT--DGLDRIFVGGLPYYFA 311
Query: 171 EDQ-----------------------------------------AIAGLNGMQLGDKKLI 189
E+Q A A LNG+++GDK L
Sbjct: 312 EEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASLNGLKVGDKTLT 371
Query: 190 VQRASVGAKNASGQQ 204
V+RA+V + + Q+
Sbjct: 372 VRRATVSGHSKTEQE 386
>gi|156070760|gb|ABU45175.1| unknown [Solanum melongena]
Length = 553
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 120/265 (45%), Gaps = 66/265 (24%)
Query: 10 TGAAGQIPA--NVIIPET-----TVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFG 57
T AGQ+P N IP VAA A+PV+ TR ARR+YVG +P
Sbjct: 168 TDVAGQVPGITNPSIPGMFSNMFPVAAGQFGALPVMPVQAMTQQATRHARRVYVGGLPPT 227
Query: 58 VTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 116
E + FF+ M+ + G G+ V+ IN +K FAF+E RS++E + AMA DG+
Sbjct: 228 ANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVI 287
Query: 117 FKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
F+G +K+RRP DY P+ T + AAV + G S+ + P +IF+GGLP
Sbjct: 288 FEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPG--SSGGLEGPDRIFVGGLP 345
Query: 167 NYLNEDQ-----------------------------------------AIAGLNGMQLGD 185
Y E Q A A LNG+++GD
Sbjct: 346 YYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGD 405
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQ 210
K L V+RA+ G + +Q V +
Sbjct: 406 KTLTVRRANQGITQPNPEQESVLLH 430
>gi|122245119|sp|Q2QKB3.1|U2A2A_WHEAT RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=U2 auxiliary factor 65 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit A; Short=U2 snRNP auxiliary factor large
subunit A
gi|68036924|gb|AAY84881.1| U2AF large subunit [Triticum aestivum]
Length = 591
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 106/223 (47%), Gaps = 62/223 (27%)
Query: 35 VPVVGSTI------TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLAC 87
VP +G + TR ARR+YVG +P E + FFNQ M + G A G+ V+
Sbjct: 254 VPALGQPLAMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNV 313
Query: 88 QINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGV 136
IN DK FAF+E RS++E + AMA DGI F+G +K+RRP DY QP P +
Sbjct: 314 YINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNL 373
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------------- 171
+ AAV + G + + P +IF+GGLP Y E
Sbjct: 374 -NLAAVGLTPGAGGGL--EGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETG 430
Query: 172 ----------------DQAIAGLNGMQLGDKKLIVQRASVGAK 198
D A A LNG+QLGD+ L V+RA+ GA+
Sbjct: 431 NSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRANQGAE 473
>gi|452979953|gb|EME79715.1| hypothetical protein MYCFIDRAFT_81194 [Pseudocercospora fijiensis
CIRAD86]
Length = 552
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 60/217 (27%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRS 102
RQ++RL + NIP T+D +++FFN + L+GL G +P ++ QI+ + +A +EF++
Sbjct: 223 RQSKRLLIHNIPAAATDDNIVDFFN--LQLNGLNVTRGQDPCVSAQISKENGYALVEFKT 280
Query: 103 IDETTQAMAFDGINF-------------KGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T AMAFDGIN + L+I+RP DY P VTD P+G++
Sbjct: 281 PEDATNAMAFDGINMMPDAMDTNGDSNGTAKGLQIKRPKDYI-VPNVTDE--TENPSGIL 337
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
S VVPD+ +KI I LP +L EDQ
Sbjct: 338 SGVVPDTQNKISITNLPTFLGEDQIQELLNSFGELRNFVLVKDTSTEESRGIAFCEYKDP 397
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASGQQA 205
A+ LNGM+LGD + V+ AS+G + G+ +
Sbjct: 398 SVTKTAVESLNGMELGDAAMKVKLASIGIQQVPGEMS 434
>gi|357160098|ref|XP_003578657.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
distachyon]
Length = 534
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 103/221 (46%), Gaps = 56/221 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FN M + G A G+ V+ IN DK FAF+E R
Sbjct: 195 TRHARRVYVGGLPPSANEQTVAIYFNHVMAAIGGNAAGLGDAVVNVYINHDKKFAFVEMR 254
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP P + + AAV + G
Sbjct: 255 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSQAAVLGPSQPNPNL-NLAAVGLTPGSAG 313
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 314 GL--EGPDRIFVGGLPYYFTEAQVQELLETFGPLRGFDIVKDRETGNSKGYAFCVYQDLA 371
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
D A A LNG+QLGD+ L V+RA+ GA + + +Q
Sbjct: 372 VTDIACAALNGIQLGDRTLTVRRANQGAAEPRPEHENILLQ 412
>gi|226497766|ref|NP_001152419.1| LOC100286059 [Zea mays]
gi|195656099|gb|ACG47517.1| splicing factor U2AF 65 kDa subunit [Zea mays]
Length = 596
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 109/249 (43%), Gaps = 68/249 (27%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
AAGQ VI P+ A TR ARR+YVG +P E + FFN M
Sbjct: 239 AAGQFNPLVIQPQAMTQQA------------TRHARRVYVGGLPPTANEQTVAIFFNGVM 286
Query: 72 H-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ G G+ VL IN DK FAF+E RS++E + AMA DGI F+G +K+RRP DY
Sbjct: 287 AAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDY 346
Query: 131 -----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE-------- 171
QP P + + AAV + G + + P +IF+GGLP Y E
Sbjct: 347 NPSLAAALGPSQPNPNL-NLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFTEAQVRELLE 403
Query: 172 ---------------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK 198
D A A LNG+++GDK L V RA+ GA
Sbjct: 404 SFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVSRANQGAS 463
Query: 199 NASGQQAPV 207
+Q +
Sbjct: 464 QPRPEQESI 472
>gi|122245120|sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=U2 auxiliary factor 65 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit B; Short=U2 snRNP auxiliary factor large
subunit B
gi|68036764|gb|AAY84880.1| U2AF large subunit [Triticum aestivum]
Length = 543
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 100/214 (46%), Gaps = 54/214 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 203 TRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 262
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---------PGVTDN-AAVAVPAGVIST 151
S++E + AMA DGI F+G +K+RRP DY P+ P N AAV + G
Sbjct: 263 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGG 322
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 323 L--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 380
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
D A A LNG+++GDK L V+RA+ G+ +Q
Sbjct: 381 TDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQ 414
>gi|302411252|ref|XP_003003459.1| splicing factor U2AF 65 kDa subunit [Verticillium albo-atrum
VaMs.102]
gi|261357364|gb|EEY19792.1| splicing factor U2AF 65 kDa subunit [Verticillium albo-atrum
VaMs.102]
Length = 568
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 106/211 (50%), Gaps = 56/211 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAAGNPVLACQINLDKNFAFLEFR 101
+RQA+RL V +P TE+ + FFN + L+GL + +P ++CQ++ DK+F +EFR
Sbjct: 241 SRQAKRLLVSKLPSSATEESVASFFN--LQLNGLNVIESTDPCVSCQLSNDKSFCVVEFR 298
Query: 102 SIDETTQAMAFDGINFK---------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
+ E T A+A DGI+ + G+ ++IRRP DY P VT+ + GV+S+
Sbjct: 299 NASEATVALALDGISMEADSGTDGAAGRGMEIRRPKDY-IVPAVTEE--LPYEPGVVSSN 355
Query: 153 VPDSPHKIFIGGLPNYLNEDQ--------------------------------------- 173
V D+P+K+ I G P YL E+Q
Sbjct: 356 VVDTPNKLSITGFPPYLTEEQVTELLTSFGELKAFVLVRDRHTDESRGFVFCEYVDSAAN 415
Query: 174 --AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
AI GL+GM LG+ KL +Q+AS+G +G
Sbjct: 416 DVAIQGLSGMDLGNSKLKIQKASIGVTQVAG 446
>gi|168028774|ref|XP_001766902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681881|gb|EDQ68304.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 486
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 103/221 (46%), Gaps = 59/221 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +F+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 153 TRHARRVYVGGLPPMANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVEMR 212
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
+++E + AMA DGI F+G S+++RRP DY P+ T + AAV + G
Sbjct: 213 TVEEASNAMALDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGG 272
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
D P +IF+GGLP YL E
Sbjct: 273 A--DGPDRIFVGGLPYYLTEVQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPSV 330
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNGM++ DK L V+RA+ ASGQ P Q V
Sbjct: 331 VDIACATLNGMKMDDKTLNVRRAT-----ASGQPKPDQANV 366
>gi|326475623|gb|EGD99632.1| splicing factor u2af large subunit [Trichophyton tonsurans CBS
112818]
gi|326483752|gb|EGE07762.1| splicing factor U2AF subunit [Trichophyton equinum CBS 127.97]
Length = 565
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 64/233 (27%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLA 86
AA+ ++ ++ + +RQ++RL+ NIP VTED + +FFN + L+GL +G +P +
Sbjct: 208 AASGSSNNTLLKPSNSRQSKRLFAHNIPPSVTEDTLQQFFN--LQLNGLNVISGVDPCQS 265
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFK---------GQS------LKIRRPHDY- 130
QI+ D FA LEF + + T A+AFDGI + G+S L I RP DY
Sbjct: 266 VQISKDGKFALLEFNTAADATVALAFDGITMEEHEANRESNGESNGEVKGLTIVRPKDYI 325
Query: 131 QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------- 173
P P TD GV+S+ VPDSP+KI + +P ++ EDQ
Sbjct: 326 VPLP--TDEEPRQ--EGVVSSNVPDSPNKICVSNIPPFIQEDQVTMLLVSFGELKSFVLV 381
Query: 174 ------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD++L V RAS+G A+G
Sbjct: 382 KDVGTDESRGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQAAG 434
>gi|396472864|ref|XP_003839217.1| hypothetical protein LEMA_P028900.1 [Leptosphaeria maculans JN3]
gi|312215786|emb|CBX95738.1| hypothetical protein LEMA_P028900.1 [Leptosphaeria maculans JN3]
Length = 587
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 55/208 (26%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRS 102
+Q++RLYV N+P GV+ +E+MEFFN + L+GL +G +P L+ QI K +A LEF++
Sbjct: 264 KQSKRLYVHNLPSGVSSEELMEFFN--LQLNGLNVVSGQDPCLSAQIATSKEYAALEFKT 321
Query: 103 IDETTQAMAFDGINFKGQS-------LKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPD 155
++ T A+A +GI+ + +S L IRRP DY TP DNA +S+VV D
Sbjct: 322 PEDATVALAMNGISMREESGGPDRSGLSIRRPKDY-ITPTADDNAYT---GDEVSSVVKD 377
Query: 156 SPHKIFIGGLPNYLNEDQ-----------------------------------------A 174
SP+K+ I +P Y+ E+Q
Sbjct: 378 SPNKLSIVNIPTYIEEEQVRELVGTMGKLKAFVLVKDESTDQHRGIAFCEYADNEIVDAV 437
Query: 175 IAGLNGMQLGDKKLIVQRASVGAKNASG 202
I GLN + LGD L V RA+VG + +G
Sbjct: 438 IEGLNDIPLGDGNLKVTRATVGLQQTAG 465
>gi|315044445|ref|XP_003171598.1| splicing factor U2AF subunit [Arthroderma gypseum CBS 118893]
gi|311343941|gb|EFR03144.1| splicing factor U2AF subunit [Arthroderma gypseum CBS 118893]
Length = 565
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 114/233 (48%), Gaps = 64/233 (27%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLA 86
AA+ + ++ + +RQ++RL+ NIP VTED + +FFN + L+GL +G +P +
Sbjct: 217 AASGSNTNTLLKPSNSRQSKRLFTHNIPPSVTEDTLQQFFN--LQLNGLNVISGVDPCQS 274
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFK---------GQS------LKIRRPHDY- 130
QI+ D FA LEF + + T A+AFDGI + G+S L I RP DY
Sbjct: 275 VQISKDGKFALLEFNTAADATVALAFDGITMEEHEANRENNGESNGEVKGLSIIRPKDYI 334
Query: 131 QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------- 173
P P TD GV+S+ VPDSP+KI + +P ++ EDQ
Sbjct: 335 VPLP--TDEEPHQ--EGVVSSNVPDSPNKICVSNIPPFIQEDQVTMLLVSFGELKSFVLV 390
Query: 174 ------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD++L V RAS+G A+G
Sbjct: 391 KDVGTDESRGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQAAG 443
>gi|242069431|ref|XP_002449992.1| hypothetical protein SORBIDRAFT_05g026786 [Sorghum bicolor]
gi|241935835|gb|EES08980.1| hypothetical protein SORBIDRAFT_05g026786 [Sorghum bicolor]
Length = 296
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 104/220 (47%), Gaps = 57/220 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FA +E R
Sbjct: 16 TRHARRVYVGGLPPDANEQTVAVYFNQIMAAIGGNTAGPGDAVLNVYINHDKKFASVEMR 75
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP+P + + AAV + AG
Sbjct: 76 SVEEASNAMALDGIMFEGVPVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTAGSGG 134
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ P +IF+GGLP Y E
Sbjct: 135 L---EDPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDKETGNSKGYAFCDYQDLT 191
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQI 209
D A A LNG+++GDK L V+RA+ GA + +Q + +
Sbjct: 192 VTDIACAALNGIKMGDKILTVRRANQGASQPTPEQESILL 231
>gi|193848546|gb|ACF22733.1| U2AF large subunit [Brachypodium distachyon]
Length = 569
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 100/214 (46%), Gaps = 54/214 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 231 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 290
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---------PGVTDN-AAVAVPAGVIST 151
S++E + AMA DGI F+G +K+RRP DY P+ P N AAV + G
Sbjct: 291 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLASALGPSQPSSNLNLAAVGLTPGSAGG 350
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 351 L--EGPDRIFVGGLPYYFTEAQVRELLESFGSLRGFDLVKDRETGNSKGYAFCVYQDLNV 408
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
D A A LNG+++GDK L V+RA+ G+ +Q
Sbjct: 409 TDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQ 442
>gi|296083697|emb|CBI23686.3| unnamed protein product [Vitis vinifera]
Length = 882
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 68/191 (35%), Positives = 94/191 (49%), Gaps = 42/191 (21%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFR 101
TR RRLYV N+P +E +ME N + SG+ G P ++C I+ +K A +EF
Sbjct: 399 TRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCISCIIHKEKGQALVEFL 458
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
+ ++ + A++FDGI+F G LKIRRP D+ GV + A A IS +V DSPHKIF
Sbjct: 459 TPEDASAALSFDGISFSGSILKIRRPKDFVDMTGVQEKLVAAPDA--ISDIVKDSPHKIF 516
Query: 162 IGGLPNYLNED---------------------------------------QAIAGLNGMQ 182
IGG+ L+ D +A AGLNGM+
Sbjct: 517 IGGISRALSSDMLMEIAAAFGPLKAYRFQVNEDLGEPCAFLEYVDQSVTLKACAGLNGMK 576
Query: 183 LGDKKLIVQRA 193
LG + L V +A
Sbjct: 577 LGGQVLTVVQA 587
>gi|361132025|gb|EHL03640.1| putative Splicing factor U2AF 50 kDa subunit [Glarea lozoyensis
74030]
Length = 568
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 106/217 (48%), Gaps = 62/217 (28%)
Query: 43 TRQARRLYVGNIP-FGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEF 100
+RQA+RL V N+P ++E+ ++ FFN QM+ GL G +P ++ QI+ DK+FA LEF
Sbjct: 235 SRQAKRLLVHNLPSTSISEEAIINFFNLQMN--GLNIVEGSDPCISAQISKDKSFALLEF 292
Query: 101 RSIDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAG 147
++ + T A+AFDGI + L IRRP DY P V+D G
Sbjct: 293 KTPSDATLALAFDGITMDDSEYVNREANGGDTKGLSIRRPKDY-IVPAVSDE--TPQEPG 349
Query: 148 VISTVVPDSPHKIFIGGLPNYLNEDQ---------------------------------- 173
V+S+VV D+ +KI + +P YL ++Q
Sbjct: 350 VVSSVVVDTQNKICMSNVPLYLTDEQVIELLTSFGELKAFVLVKDNSTGESRGIAFCEYA 409
Query: 174 --------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGDK L VQRAS+G SG
Sbjct: 410 DPAAATDIAVEGLNGMELGDKHLRVQRASIGNTQVSG 446
>gi|303283510|ref|XP_003061046.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457397|gb|EEH54696.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 378
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 63/223 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG + V + + +FF + M +G + G V++ IN +K FAF+EF+
Sbjct: 21 TRHARRVYVGALTADVDDAHLTQFFEEIMLATGATKRVDGGCVVSTYINREKLFAFIEFQ 80
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAG--- 147
+++E + A+ FDG+ + GQ L++RRP+DY QP P + + +A+ +
Sbjct: 81 TVEEASNALGFDGVVYGGQQLRLRRPNDYNIAQASLLGPQQPNPNL-NYSAIGINHTPTP 139
Query: 148 -VISTVVPDSPHKIFIGGLPNYLNEDQ--------------------------------- 173
V ST SP+K+F+GGLPNY+ E+Q
Sbjct: 140 MVASTENSTSPYKLFVGGLPNYITENQVKELVCSFGEIKAFNLVFDKDTGLSKGYAFWEF 199
Query: 174 --------AIAGLNGMQLGDKKLIVQRAS-----VGAKNASGQ 203
AI GL+GM+LG+K + V+ A+ +G NA+G+
Sbjct: 200 LDPSVSEAAIKGLDGMRLGEKLINVKFANGNPPPIGGYNAAGE 242
>gi|76154831|gb|AAX26240.2| SJCHGC03157 protein [Schistosoma japonicum]
Length = 258
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 75/138 (54%), Gaps = 42/138 (30%)
Query: 120 QSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------ 173
Q+LK RRP + P GV++ +V VP GV+STVV DSPHKIF+GGLP YLNEDQ
Sbjct: 2 QALKFRRPRVFAPLLGVSEQQSVIVP-GVVSTVVQDSPHKIFVGGLPYYLNEDQVKELLL 60
Query: 174 -----------------------------------AIAGLNGMQLGDKKLIVQRASVGAK 198
A AGLNGMQLGDKKLIVQRASVGAK
Sbjct: 61 SFGPLKGFNLVKDGSTGLSKGYAFCEYVDSNVTDHACAGLNGMQLGDKKLIVQRASVGAK 120
Query: 199 NASGQQAPVQIQVPGLTQ 216
+ +G +Q+ GL +
Sbjct: 121 HTTGVLPQCLLQMSGLEE 138
>gi|327297188|ref|XP_003233288.1| splicing factor u2af large subunit [Trichophyton rubrum CBS 118892]
gi|326464594|gb|EGD90047.1| splicing factor u2af large subunit [Trichophyton rubrum CBS 118892]
Length = 563
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 114/233 (48%), Gaps = 64/233 (27%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLA 86
AA+ + ++ + +RQ++RL+ NIP VTED + +FFN + L+GL +G +P +
Sbjct: 208 AASGSGNNTLLKPSNSRQSKRLFAHNIPPNVTEDTLQQFFN--LQLNGLNVISGVDPCQS 265
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFK---------GQS------LKIRRPHDY- 130
QI+ D FA LEF + + T A+AFDGI + G+S L I RP DY
Sbjct: 266 VQISKDGKFALLEFNTAADATVALAFDGITMEEHEANRESNGESNGNVKGLTIVRPKDYI 325
Query: 131 QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------- 173
P P TD GV+S+ VPDSP+KI + +P ++ EDQ
Sbjct: 326 VPLP--TDEEPRQ--EGVVSSNVPDSPNKICVSNIPPFIQEDQVTMLLVSFGELKSFVLV 381
Query: 174 ------------------------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD++L V RAS+G A+G
Sbjct: 382 KDVGTDESRGIAFCEYLDSASTGIAVEGLNGMELGDRRLKVNRASIGTVQAAG 434
>gi|357470349|ref|XP_003605459.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355506514|gb|AES87656.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 634
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 101/220 (45%), Gaps = 54/220 (24%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M ++ G G+ V+ IN DK FAF+E R
Sbjct: 296 TRHARRVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMR 355
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
S++E + AMA DGI F+G +K+RRP DY P+ T + AV + G
Sbjct: 356 SVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGG 415
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
+ + P +IF+GGLP Y E Q
Sbjct: 416 L--EGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAV 473
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
A A LNG+++GDK L V+RA+ G +Q + +
Sbjct: 474 TDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMH 513
>gi|336465212|gb|EGO53452.1| hypothetical protein NEUTE1DRAFT_92746 [Neurospora tetrasperma FGSC
2508]
Length = 584
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 52/213 (24%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL V NIP T++ ++ FFN Q++ + +A +P + CQI+ D +FA LEF
Sbjct: 254 TNSRQSKRLIVSNIPPSATDESLLGFFNLQLNGLNVIDSA-DPCVQCQISPDHSFAMLEF 312
Query: 101 RSIDETTQAMAFDGINFKGQS---------LKIRRPHDYQPTPGVTDNAAVAVPAGVIST 151
R+ + T A+A DGI + + LKIRRP DY P + ++ + V S+
Sbjct: 313 RNSPDATVALALDGITMEAEDANGAAGAGGLKIRRPKDYI-VPAIVEDPNYDPDSEVPSS 371
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
+V DSP+KI + +P YL+E+Q
Sbjct: 372 IVIDSPNKISVTNIPAYLSEEQIMELLVAFGKLKSFVLVKDKHTEESRGIAFCEYHDSSV 431
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
AI GLN M LGD+ L VQ+AS G + +G+
Sbjct: 432 TSVAIDGLNNMMLGDRALKVQKASYGIQQVAGE 464
>gi|224003073|ref|XP_002291208.1| U2 snRNP auxillary splicing factor, U2AF subunit [Thalassiosira
pseudonana CCMP1335]
gi|220972984|gb|EED91315.1| U2 snRNP auxillary splicing factor, U2AF subunit, partial
[Thalassiosira pseudonana CCMP1335]
Length = 352
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 22/159 (13%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFF------------NQQMHLSGLAQAAGN-PVLACQI 89
TR ARRLYVGNIP V+++++ FF N + H S Q N P+++ I
Sbjct: 1 TRHARRLYVGNIP-DVSDEQLHHFFRDAIRSSIILDNNSEAHSSHKHQYVDNDPIISVYI 59
Query: 90 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQ-SLKIRRPHDYQPTPGVTDNAAVAVPA-- 146
N ++ FAFLEF++++ TT MA DG++ G+ +KI+RP+DY P NA+ +P
Sbjct: 60 NRERRFAFLEFKTMEITTACMALDGLDVMGRGKVKIKRPNDYNPAVAPMLNAS-TMPVLD 118
Query: 147 ----GVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGM 181
G+IS V D P+KIF+GGLP +L + Q + L+
Sbjct: 119 TGKLGIISMTVHDGPNKIFVGGLPYHLVDSQVLELLSAF 157
>gi|224134362|ref|XP_002327819.1| predicted protein [Populus trichocarpa]
gi|222836904|gb|EEE75297.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 50/218 (22%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 199 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 258
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV--VPDS--- 156
S++E + AMA DGI F+G +K+RRP DY P+ T + P +S V P S
Sbjct: 259 SVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLSAVGLAPGSAGG 318
Query: 157 ---PHKIFIGGLPNYLNEDQ---------------------------------------- 173
P +IF+GGLP Y E Q
Sbjct: 319 LEGPDRIFVGGLPYYFTESQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTD 378
Query: 174 -AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
A A LNG+++GDK L V+RA+ G +Q V +
Sbjct: 379 IACAALNGIKMGDKTLTVRRANQGTNQPKPEQENVLLH 416
>gi|85111663|ref|XP_964044.1| hypothetical protein NCU03039 [Neurospora crassa OR74A]
gi|28925805|gb|EAA34808.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 584
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 52/213 (24%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL V NIP T++ ++ FFN Q++ + +A +P + CQI+ D +FA LEF
Sbjct: 254 TNSRQSKRLIVSNIPPSATDESLLGFFNLQLNGLNVIDSA-DPCVQCQISPDHSFAMLEF 312
Query: 101 RSIDETTQAMAFDGINFKGQS---------LKIRRPHDYQPTPGVTDNAAVAVPAGVIST 151
R+ + T A+A DGI + + LKIRRP DY P + ++ + V S+
Sbjct: 313 RNSPDATVALALDGITMEAEDANGAAGAGGLKIRRPKDYI-VPAIVEDPNYDPDSEVPSS 371
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
+V DSP+KI + +P YL+E+Q
Sbjct: 372 IVIDSPNKISVTNIPAYLSEEQIMELLVAFGKLKSFVLVKDKHTEESRGIAFCEYHDSSV 431
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
AI GLN M LGD+ L VQ+AS G + +G+
Sbjct: 432 TSVAIDGLNNMMLGDRALKVQKASYGIQQVAGE 464
>gi|224094725|ref|XP_002310209.1| predicted protein [Populus trichocarpa]
gi|222853112|gb|EEE90659.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 101/220 (45%), Gaps = 54/220 (24%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 56 TRHARRVYVGGLPPIANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 115
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
S++E + AMA DGI F+G +K+RRP DY P+ T + AAV + G
Sbjct: 116 SVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGG 175
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 176 L--EGPDRIFVGGLPYYFTEAQIRELLESFGALRGFDLVKDRETGNSKGYAFCVYQDLSV 233
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
D A A LNG+++GDK L V+RA+ G +Q V +
Sbjct: 234 TDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQENVLLH 273
>gi|322693990|gb|EFY85833.1| splicing factor, putative [Metarhizium acridum CQMa 102]
Length = 584
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 57/207 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL V NIP G +E+ ++ FFN Q++ + +++ +P CQ + D++FA LEFR+
Sbjct: 243 SRQAKRLIVSNIPQGNSEESLISFFNLQLNGLNVIESS-DPCNLCQFSTDRSFAVLEFRN 301
Query: 103 IDETTQAMAFDGINFKG-----------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVIST 151
+ T A+A DGIN + Q L IRRP DY P + + +A V+S
Sbjct: 302 AGDATVALALDGINMEADDTMNGDGGEKQGLSIRRPKDYV-MPAIPEE--MAYDPNVVSN 358
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
VVPD+ HK+ I +P +L EDQ
Sbjct: 359 VVPDTVHKLSITNIPTFLTEDQIIELLAAFGKPKAFVLVKDRSTEESRGIAFAEYLEPGS 418
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVG 196
A++ LNGM +G KKL V +AS+G
Sbjct: 419 ANEPALSALNGMDVGGKKLKVAKASIG 445
>gi|297735185|emb|CBI17547.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 101/220 (45%), Gaps = 54/220 (24%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG + E + FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 55 TRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 114
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
S++E + AMA DGI F+G +K+RRP DY P+ T + AAV + G
Sbjct: 115 SVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGG 174
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 175 L--EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 232
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
D A A LNG+++GDK L V+RA+ GA +Q V +
Sbjct: 233 TDIACAALNGIKMGDKTLTVRRANQGASQPKPEQENVLLH 272
>gi|171684585|ref|XP_001907234.1| hypothetical protein [Podospora anserina S mat+]
gi|170942253|emb|CAP67905.1| unnamed protein product [Podospora anserina S mat+]
Length = 585
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 57/217 (26%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLE 99
T +RQA+RL + NIP T+D ++ FFN Q++ L+ + Q +P L C I+ D++FA LE
Sbjct: 252 TNSRQAKRLILSNIPASATDDSIVNFFNLQLNGLNVIEQT--DPCLLCNISPDRSFAMLE 309
Query: 100 FRSIDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAG 147
FR+ + T A+A DGI LKIRRP DY P + ++ +
Sbjct: 310 FRNNTDATVALALDGITMDADDHQANGNGAAATGLKIRRPKDYI-VPAIVEDPNYDPDSS 368
Query: 148 VISTVVPDSPHKIFIGGLPNYLNEDQ---------------------------------- 173
V ST V D P+KI + +P YL EDQ
Sbjct: 369 VPSTNVVDGPNKISVTNIPPYLTEDQVMELLVSFGKLKSFVFVKDNGTQEPRGIAFLEYA 428
Query: 174 -------AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
AI+GLN M LG+K L VQ+AS+G +G+
Sbjct: 429 DSSVTDVAISGLNNMMLGEKALKVQKASIGITQVAGE 465
>gi|296811258|ref|XP_002845967.1| splicing factor U2AF subunit [Arthroderma otae CBS 113480]
gi|238843355|gb|EEQ33017.1| splicing factor U2AF subunit [Arthroderma otae CBS 113480]
Length = 557
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 64/218 (29%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQ++RL+ NIP VTED + +FFN + L+GL +G +P + QI+ D FA LEF
Sbjct: 224 SRQSKRLFAHNIPPSVTEDTLQQFFN--LQLNGLNVISGVDPCQSVQISKDGKFALLEFN 281
Query: 102 SIDETTQAMAFDGINFK---------GQS------LKIRRPHDY-QPTPGVTDNAAVAVP 145
+ + T A+AFDGI + G+S L I RP DY P P +
Sbjct: 282 TAADATVALAFDGITMEEHEANQESNGESNGQVKGLSIVRPKDYIVPLPTEEEPRQ---- 337
Query: 146 AGVISTVVPDSPHKIFIGGLPNYLNEDQ-------------------------------- 173
GV+S+ VPDSP+KI + +P ++ EDQ
Sbjct: 338 EGVLSSNVPDSPNKICVSNIPPFIQEDQVTMLLISFGELKSFVLVKDVGTDESRGIAFCE 397
Query: 174 ---------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD++L V RAS+G A+G
Sbjct: 398 YLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQAAG 435
>gi|388580158|gb|EIM20475.1| hypothetical protein WALSEDRAFT_55089 [Wallemia sebi CBS 633.66]
Length = 391
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 49/195 (25%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
R +RR+++G++ E+ + + FN +M + +A+ G PV+ + D+ +A++EFR+
Sbjct: 30 RASRRVFIGDLKPNHNEENLTKLFNDKMSTIDQVAKIPGEPVVNVTVKHDRGYAYIEFRN 89
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFI 162
DE A+ FDG F+G+ ++I+RP + V D +S VPDS KIF+
Sbjct: 90 TDEAAYALQFDGTIFQGEGIQIKRPQE------VLDELQRK-QGHTVSGTVPDSDQKIFV 142
Query: 163 GGLPNYLNEDQ-----------------------------------------AIAGLNGM 181
G LP +LN++Q AI GLNGM
Sbjct: 143 GSLPTFLNDEQVMELLGSFGELRSFNLVKEGTSDVSKGFAFCEYMDPALTDIAIQGLNGM 202
Query: 182 QLGDKKLIVQRASVG 196
++GD+KL+VQR+S G
Sbjct: 203 EVGDRKLVVQRSSTG 217
>gi|330931856|ref|XP_003303563.1| hypothetical protein PTT_15819 [Pyrenophora teres f. teres 0-1]
gi|311320368|gb|EFQ88342.1| hypothetical protein PTT_15819 [Pyrenophora teres f. teres 0-1]
Length = 578
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 54/208 (25%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFRS 102
+Q++RLYV N+P G T E+MEFFN Q L+GL +GN P L+ I K +A LEF++
Sbjct: 254 KQSKRLYVHNLPSGCTSQEIMEFFNNQ--LNGLNVVSGNDPCLSAHIATSKEYAALEFKA 311
Query: 103 IDETTQAMAFDGINFKGQ-------SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPD 155
++ T A+A +GI+ + + L IRRP DY TP +NA P +S+VV D
Sbjct: 312 PEDATLALAMNGISMRDEGGAPDRSGLSIRRPKDY-ITPTADENA--YPPGDEVSSVVKD 368
Query: 156 SPHKIFIGGLPNYLNEDQ-----------------------------------------A 174
SP+K+ I +P Y+ E+Q
Sbjct: 369 SPNKLSIVNIPTYIEEEQIRELVETMGKLKAFILVKDTGTDQHRGIAFCEYADNEIIDAV 428
Query: 175 IAGLNGMQLGDKKLIVQRASVGAKNASG 202
I GLN + LGD L V RA+VG + ++G
Sbjct: 429 IEGLNDIPLGDGNLKVSRATVGLQQSTG 456
>gi|121711505|ref|XP_001273368.1| splicing factor u2af large subunit [Aspergillus clavatus NRRL 1]
gi|119401519|gb|EAW11942.1| splicing factor u2af large subunit [Aspergillus clavatus NRRL 1]
Length = 583
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 103/215 (47%), Gaps = 60/215 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+V N+P GV+ + ++ FFN + L+GL +P ++ QI+ D FA LEF+
Sbjct: 234 SRQAKRLFVYNLPPGVSNEHLVSFFN--LQLNGLNVIHNVDPCISAQISEDHTFALLEFK 291
Query: 102 SIDETTQAMAFDGINFK-------------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGV 148
S ++TT A+AFDGI + + L++RRP DY G D GV
Sbjct: 292 SPNDTTVALAFDGITMEEHEAMGAGAENGASKGLEVRRPKDYVVPNGSADQ---EYQEGV 348
Query: 149 ISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------------- 173
+ VPDSP+KI + +P Y+ E+
Sbjct: 349 LLNEVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYAD 408
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A G
Sbjct: 409 PSATPIAVEGLNGMELGDRHLKVVRASIGMTQAVG 443
>gi|167515386|ref|XP_001742034.1| RNA-binding region RNP-1 containing protein [Monosiga brevicollis
MX1]
gi|163778658|gb|EDQ92272.1| RNA-binding region RNP-1 containing protein [Monosiga brevicollis
MX1]
Length = 431
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 63/96 (65%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
+TR ARRLYVG IP G + E+ EFFN Q+ GL G PV++ QIN +K+FAFLE R
Sbjct: 86 LTRGARRLYVGGIPNGANDMELAEFFNMQLTQQGLTIGPGAPVVSAQINEEKSFAFLELR 145
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT 137
S +E T +AFD I F G L+IRRP DYQ G T
Sbjct: 146 SPEEATSCIAFDNIMFMGNQLRIRRPKDYQAPAGGT 181
>gi|341038664|gb|EGS23656.1| hypothetical protein CTHT_0003520 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 584
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 104/218 (47%), Gaps = 55/218 (25%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQA+RL V N+P TE+ ++ FFN Q++ + + +P L I D++FA LEF
Sbjct: 250 TNSRQAKRLVVRNLPPSATEESLVNFFNLQLNGLNVIETT-DPCLQAHIAPDRSFAMLEF 308
Query: 101 RSIDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAGV 148
R+ E T A+AFDGI+ L+I RP DY P V ++ + V
Sbjct: 309 RNSSEATVALAFDGISMDADDAGANGAEAVHGGLQITRPKDYI-VPAVVEDPNYDPDSDV 367
Query: 149 ISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------------- 173
S+VV DSP+KI + +P YLNEDQ
Sbjct: 368 PSSVVIDSPNKISVANIPPYLNEDQVMELLVSFGKLKSFVLVKDNGTQESRGIAFLEYVD 427
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQA 205
AI GLN M LG++KL V++AS+G +G+ +
Sbjct: 428 PSVSNVAIQGLNDMPLGEQKLKVKKASIGITQVAGEMS 465
>gi|119482894|ref|XP_001261475.1| splicing factor u2af large subunit [Neosartorya fischeri NRRL 181]
gi|119409630|gb|EAW19578.1| splicing factor u2af large subunit [Neosartorya fischeri NRRL 181]
Length = 563
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 57/213 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL+V N+P V+ + ++ FFN Q++ + + +P ++ QI+ D +FA LEF++
Sbjct: 233 SRQARRLFVYNLPSVVSSEHLVSFFNLQLNGLNVIHSV-DPCISAQISEDHSFALLEFKT 291
Query: 103 IDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
++TT A+AFDGI + L++RRP DY G D GV+
Sbjct: 292 PNDTTVALAFDGITMEEHEPASGTENGAPKGLEVRRPKDYIVPNGSADQ---EYQEGVLL 348
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+KI + +P Y+ E+
Sbjct: 349 NEVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADPS 408
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 409 ATAIAVEGLNGMELGDRHLKVVRASIGMTQAAG 441
>gi|189204129|ref|XP_001938400.1| splicing factor U2AF 65 kDa subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985499|gb|EDU50987.1| splicing factor U2AF 65 kDa subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 572
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 102/208 (49%), Gaps = 54/208 (25%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFRS 102
+Q++RLYV N+P G T E+MEFFN Q L+GL +GN P L+ I K +A LEF++
Sbjct: 248 KQSKRLYVHNLPSGCTSQEIMEFFNNQ--LNGLNVVSGNDPCLSAHIATSKEYAALEFKA 305
Query: 103 IDETTQAMAFDGINFKGQ-------SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPD 155
++ T A+A GI+ + + L IRRP DY TP +NA P +S+VV D
Sbjct: 306 PEDATLALAMTGISMRDEGGAPDRSGLSIRRPKDY-ITPTADENA--YPPGDEVSSVVKD 362
Query: 156 SPHKIFIGGLPNYLNEDQ-----------------------------------------A 174
SP+K+ I +P Y+ E+Q
Sbjct: 363 SPNKLSIVNIPTYIEEEQIRELVETMGKLKAFILVKDTGTDQHRGIAFCEYADNEIIDAV 422
Query: 175 IAGLNGMQLGDKKLIVQRASVGAKNASG 202
I GLN + LGD L V RA+VG + ++G
Sbjct: 423 IEGLNDIPLGDGNLKVSRATVGLQQSTG 450
>gi|147840634|emb|CAN68321.1| hypothetical protein VITISV_032193 [Vitis vinifera]
Length = 565
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 65/260 (25%)
Query: 14 GQIPANV---------IIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDE 62
GQIP + P + A +PV T TR ARR+YVG + E
Sbjct: 187 GQIPGTTPTIPGMFPNMFPLASGQFGALPVMPVQAMTQQATRHARRVYVGGLSPTANEQS 246
Query: 63 MMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121
+ FF+Q M + G G+ V+ IN +K FAF+E RS++E + AMA DGI F+G
Sbjct: 247 VATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 306
Query: 122 LKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE 171
+K+RRP DY P+ T + AAV + G + + P +IF+GGLP Y E
Sbjct: 307 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFTE 364
Query: 172 -----------------------------------------DQAIAGLNGMQLGDKKLIV 190
D A A LNG+++GDK L V
Sbjct: 365 AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 424
Query: 191 QRASVGAKNASGQQAPVQIQ 210
+RA+ GA +Q V +
Sbjct: 425 RRANQGASQPKPEQENVLLH 444
>gi|359476715|ref|XP_002271463.2| PREDICTED: splicing factor U2af large subunit B-like [Vitis
vinifera]
Length = 568
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 65/260 (25%)
Query: 14 GQIPANV---------IIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDE 62
GQIP + P + A +PV T TR ARR+YVG + E
Sbjct: 190 GQIPGTTPTIPGMFPNMFPLASGQFGALPVMPVQAMTQQATRHARRVYVGGLSPTANEQS 249
Query: 63 MMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121
+ FF+Q M + G G+ V+ IN +K FAF+E RS++E + AMA DGI F+G
Sbjct: 250 VATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 309
Query: 122 LKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE 171
+K+RRP DY P+ T + AAV + G + + P +IF+GGLP Y E
Sbjct: 310 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL--EGPDRIFVGGLPYYFTE 367
Query: 172 -----------------------------------------DQAIAGLNGMQLGDKKLIV 190
D A A LNG+++GDK L V
Sbjct: 368 AQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 427
Query: 191 QRASVGAKNASGQQAPVQIQ 210
+RA+ GA +Q V +
Sbjct: 428 RRANQGASQPKPEQENVLLH 447
>gi|225677913|gb|EEH16197.1| splicing factor U2AF 65 kDa subunit ) [Paracoccidioides
brasiliensis Pb03]
gi|226287345|gb|EEH42858.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides brasiliensis
Pb18]
Length = 567
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 72/233 (30%)
Query: 36 PVVGSTI--------TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLA 86
PV G++I +RQA+RL+V NIP TE+ +++FFN + L+GL G +P ++
Sbjct: 219 PVPGTSINTVLRPSNSRQAKRLFVHNIPPSATEESLVQFFN--LQLNGLNVIKGVDPCVS 276
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGI---------------NFKGQSLKIRRPHDY- 130
Q++ D++F LEF+S + T A+AFDGI N Q L +RRP DY
Sbjct: 277 AQLSKDRSFGLLEFKSSADATVALAFDGITMEDTGDMDTSNGEANGSNQGLSLRRPKDYI 336
Query: 131 QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------- 171
P G + GV+S VVPD+P+KI + +P ++ E
Sbjct: 337 LPVGGEEEPHR----EGVVSNVVPDTPNKICVSNIPPFIEEEPVTMLLVSFGELKSFVLV 392
Query: 172 ----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG 202
D A+ LNGM+LG+K+L V RAS+G A+G
Sbjct: 393 KDSETGESRGIAFCEYLDPMSTDIAVENLNGMELGNKRLRVVRASIGTIQATG 445
>gi|255568277|ref|XP_002525113.1| splicing factor u2af large subunit, putative [Ricinus communis]
gi|223535572|gb|EEF37240.1| splicing factor u2af large subunit, putative [Ricinus communis]
Length = 549
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 100/220 (45%), Gaps = 54/220 (24%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+ M + G G+ V+ IN +K FAF+E R
Sbjct: 252 TRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 311
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
S++E + AMA DGI F+G +K+RRP DY P+ T + AV + G
Sbjct: 312 SVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGG 371
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 372 L--EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 429
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
D A A LNG+++GDK L V+RA+ GA +Q V +
Sbjct: 430 TDIACAALNGIKMGDKTLTVRRANQGANQPKPEQETVLLH 469
>gi|30696485|ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidopsis thaliana]
gi|209572798|sp|Q8L716.2|U2A2B_ARATH RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=U2 auxiliary factor 65 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit B; Short=U2 snRNP auxiliary factor large
subunit B
gi|332195625|gb|AEE33746.1| Splicing factor U2af large subunit B [Arabidopsis thaliana]
Length = 589
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 107/239 (44%), Gaps = 54/239 (22%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQA 79
++P + A V + TR ARR+YVG +P E + FF+Q M + G
Sbjct: 229 MVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAG 288
Query: 80 AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT-- 137
G+ V+ IN +K FAF+E RS++E + AMA DGI +G +K+RRP DY P+ T
Sbjct: 289 PGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLG 348
Query: 138 --------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
+ AV + +G ST + P +IF+GGLP Y E
Sbjct: 349 PSQPNPNLNLGAVGLSSG--STGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNL 406
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA GA +Q V
Sbjct: 407 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEV 465
>gi|350295506|gb|EGZ76483.1| hypothetical protein NEUTE2DRAFT_76972 [Neurospora tetrasperma FGSC
2509]
Length = 592
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 52/213 (24%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL V NIP T++ ++ FFN Q++ + +A +P + CQI+ D +FA LEF
Sbjct: 262 TNSRQSKRLIVSNIPPSATDESLLGFFNLQLNGLNVIDSA-DPCVQCQISPDHSFAMLEF 320
Query: 101 RSIDETTQAMAFDGINFKGQS---------LKIRRPHDYQPTPGVTDNAAVAVPAGVIST 151
++ + T A+A DGI + + LKIRRP DY P + ++ + V S+
Sbjct: 321 KNSPDATVALALDGITMEAEDANGAAGAGGLKIRRPKDYI-VPAIVEDPNYDPDSEVPSS 379
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
+V DSP+KI + +P YL+E+Q
Sbjct: 380 IVIDSPNKISVTNIPAYLSEEQIMELLVAFGKLKSFVLVKDKHTEESRGIAFCEYHDSSV 439
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
AI GLN M LGD+ L VQ+AS G + +G+
Sbjct: 440 TSVAIDGLNNMMLGDRALKVQKASYGIQQVAGE 472
>gi|12323333|gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis
thaliana]
Length = 568
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 107/239 (44%), Gaps = 54/239 (22%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQA 79
++P + A V + TR ARR+YVG +P E + FF+Q M + G
Sbjct: 208 MVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAG 267
Query: 80 AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT-- 137
G+ V+ IN +K FAF+E RS++E + AMA DGI +G +K+RRP DY P+ T
Sbjct: 268 PGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLG 327
Query: 138 --------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
+ AV + +G ST + P +IF+GGLP Y E
Sbjct: 328 PSQPNPNLNLGAVGLSSG--STGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNL 385
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA GA +Q V
Sbjct: 386 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEV 444
>gi|340520531|gb|EGR50767.1| predicted protein [Trichoderma reesei QM6a]
Length = 539
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 99/208 (47%), Gaps = 58/208 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL V N+P GVTE+ ++ FFN Q++ + + +P + CQ + DK FA +EFR+
Sbjct: 225 SRQAKRLLVYNVPSGVTEEALIAFFNLQLNGLNVIETP-DPCVLCQFSSDKTFAVVEFRN 283
Query: 103 IDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+ T A+A DGI + L IRRP DY PG+ D+ + VIS
Sbjct: 284 ASDATVALALDGITMEADDAQNGTANGGSHGLDIRRPKDYV-MPGIPDD--IPYDPEVIS 340
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VVPD+ HK+ I +P +LNE+Q
Sbjct: 341 NVVPDTVHKLCITNIPTFLNEEQIIELLAAFGKPKSFVLVKDRSTEESRGIAFTEYLDPS 400
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVG 196
A+ LNGM + KKL V +AS+G
Sbjct: 401 SANEPALNSLNGMDVAGKKLKVTKASIG 428
>gi|295663747|ref|XP_002792426.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279096|gb|EEH34662.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 567
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 64/224 (28%)
Query: 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNF 95
V+ + +RQA+RL+V NIP TE+ +++FFN + L+GL G +P ++ Q++ D++F
Sbjct: 228 VLRPSNSRQAKRLFVHNIPPSATEESLVQFFN--LQLNGLNVIKGVDPCVSAQLSKDRSF 285
Query: 96 AFLEFRSIDETTQAMAFDGI---------------NFKGQSLKIRRPHDY-QPTPGVTDN 139
LEF+S + T A+AFDGI N Q L +RRP DY P G +
Sbjct: 286 GLLEFKSSADATVALAFDGITMEDTGDMDTSNGEANGSNQGLSLRRPKDYILPVGGEEEP 345
Query: 140 AAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE---------------------------- 171
GV+S VVPD+P+KI + +P ++ E
Sbjct: 346 HR----EGVVSNVVPDTPNKICVSNIPPFIEEEPVTMLLVSFGELKSFVLVKDSETGESR 401
Query: 172 -------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG 202
D A+ LNGM+LG+K+L V RAS+G A+G
Sbjct: 402 GIAFCEYLDPMSTDIAVENLNGMELGNKRLKVVRASIGTIQATG 445
>gi|125584846|gb|EAZ25510.1| hypothetical protein OsJ_09334 [Oryza sativa Japonica Group]
Length = 942
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 23 PETTVAAAAAAAVPVVGST----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA- 77
P TT+ + V S TR RRL++ N+P TED ++ N+ + S +
Sbjct: 446 PNTTIGTILTGSNLAVDSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASH 505
Query: 78 -QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
Q + P L+C IN DK AF+EF + ++ T A++FDG +F G SLKIRRP +Y V
Sbjct: 506 IQRSKQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEYVEMAHV 565
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------QAIAGLNGMQLG 184
+ +IS VV DSPHKIFI G+ ++ + +A AGLNGM+LG
Sbjct: 566 APKKP-SEEIKLISDVVADSPHKIFIAGISGVISSEMYIDHPITSKACAGLNGMKLG 621
>gi|350635494|gb|EHA23855.1| hypothetical protein ASPNIDRAFT_209800 [Aspergillus niger ATCC
1015]
Length = 566
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 104/214 (48%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V NIP VT + ++ FFN Q++ + Q+ +P ++ Q+ D FA LEF+S
Sbjct: 216 SRQAKRLFVYNIPESVTGETLLAFFNVQLNGLNVIQSV-DPCISAQVAQDHTFALLEFKS 274
Query: 103 IDETTQAMAFDGINFK-------------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI + Q L++RRP DY PG A GV+
Sbjct: 275 PNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDY-IVPG---GAEQEYQEGVL 330
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 331 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADP 390
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 391 SATTIAVEGLNGMELGDRHLKVVRASIGMTQAAG 424
>gi|297840477|ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arabidopsis lyrata subsp.
lyrata]
gi|297333961|gb|EFH64379.1| hypothetical protein ARALYDRAFT_475241 [Arabidopsis lyrata subsp.
lyrata]
Length = 589
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 108/242 (44%), Gaps = 54/242 (22%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQA 79
++P + A V + TR ARR+YVG +P E + FF+Q M + G
Sbjct: 229 MVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMSAIGGNTAG 288
Query: 80 AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT-- 137
G+ V+ IN +K FAF+E RS++E + AMA DGI +G +K+RRP DY P+ T
Sbjct: 289 PGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLG 348
Query: 138 --------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
+ AAV + +G ST + P +IF+GGLP Y E
Sbjct: 349 PSQPNPNLNLAAVGLSSG--STGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNL 406
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQ 208
D A A LNG+++GDK L V+RA G +Q V
Sbjct: 407 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGVIQPKPEQEEVL 466
Query: 209 IQ 210
+
Sbjct: 467 LH 468
>gi|134075845|emb|CAL00224.1| unnamed protein product [Aspergillus niger]
Length = 598
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 104/214 (48%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V NIP VT + ++ FFN Q++ + Q+ +P ++ Q+ D FA LEF+S
Sbjct: 248 SRQAKRLFVYNIPESVTGETLLAFFNVQLNGLNVIQSV-DPCISAQVAQDHTFALLEFKS 306
Query: 103 IDETTQAMAFDGINFK-------------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI + Q L++RRP DY PG A GV+
Sbjct: 307 PNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDYI-VPG---GAEQEYQEGVL 362
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 363 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADP 422
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 423 SATTIAVEGLNGMELGDRHLKVVRASIGMTQAAG 456
>gi|224030681|gb|ACN34416.1| unknown [Zea mays]
Length = 425
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 96/220 (43%), Gaps = 56/220 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FFN M + G G+ VL IN DK FAF+E R
Sbjct: 132 TRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 191
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AM DGI F+G +KIRRP DY QP P + +A P
Sbjct: 192 SVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGSAGG 251
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ P +IF+GGL Y E
Sbjct: 252 L---EGPDRIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 308
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQI 209
D A A LNG+++GDK L V+RA+ GA +Q + +
Sbjct: 309 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILL 348
>gi|414591745|tpg|DAA42316.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 538
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 95/218 (43%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FFN M + G G+ VL IN DK FAF+E R
Sbjct: 245 TRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 304
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AM DGI F+G +KIRRP DY QP P + +A P
Sbjct: 305 SVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGSAGG 364
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
PD +IF+GGL Y E
Sbjct: 365 LEGPD---RIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 421
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 422 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESI 459
>gi|317029342|ref|XP_001391373.2| splicing factor u2af large subunit [Aspergillus niger CBS 513.88]
Length = 561
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 104/214 (48%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V NIP VT + ++ FFN Q++ + Q+ +P ++ Q+ D FA LEF+S
Sbjct: 231 SRQAKRLFVYNIPESVTGETLLAFFNVQLNGLNVIQSV-DPCISAQVAQDHTFALLEFKS 289
Query: 103 IDETTQAMAFDGINFK-------------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI + Q L++RRP DY PG A GV+
Sbjct: 290 PNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDYI-VPG---GAEQEYQEGVL 345
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 346 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADP 405
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 406 SATTIAVEGLNGMELGDRHLKVVRASIGMTQAAG 439
>gi|449299113|gb|EMC95127.1| hypothetical protein BAUCODRAFT_526859 [Baudoinia compniacensis
UAMH 10762]
Length = 432
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 103/219 (47%), Gaps = 61/219 (27%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLE 99
+ RQ++RL+ NIP V E + +FFN + L+GL G +P ++ Q++ D +A L+
Sbjct: 98 STARQSKRLFAYNIPPNVNESMISDFFN--LQLNGLNVTRGVDPCISAQLSQDLTYALLD 155
Query: 100 FRSIDETTQAMAFDGI-------------NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA 146
F++ ++ T AMA DGI N Q L I+RP DY P V D+ A
Sbjct: 156 FKTSEDATNAMALDGITMPEHMEVMNGSANGNSQGLIIQRPKDYI-VPAVVDDTEHE--A 212
Query: 147 GVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------------------- 173
GV+S+ VPD+ KI I +P+YL E+Q
Sbjct: 213 GVLSSTVPDTQFKISITHIPSYLTEEQVQELLVSFGELKNFVLVKDAGTDQSRGIAFCEY 272
Query: 174 ---------AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
A+ LNGM+LGD L VQRAS+G + G+
Sbjct: 273 KDAKNTTDIAVESLNGMELGDSHLKVQRASIGTQQVGGE 311
>gi|367042858|ref|XP_003651809.1| hypothetical protein THITE_2112508 [Thielavia terrestris NRRL 8126]
gi|346999071|gb|AEO65473.1| hypothetical protein THITE_2112508 [Thielavia terrestris NRRL 8126]
Length = 563
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 103/218 (47%), Gaps = 58/218 (26%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLE 99
T +RQ++RL V N+P TE+ M+ F N + L+GL +P L C I D++FA LE
Sbjct: 229 TNSRQSKRLVVENLPASATEESMVNFIN--LQLNGLNVIENTDPCLQCLIAPDRSFAMLE 286
Query: 100 FRSIDETTQAMAFDGINFKGQS-------------LKIRRPHDYQPTPGVTDNAAVAVPA 146
FR+ + T A+AFDGI+ + L+IRRP DY P V ++ +
Sbjct: 287 FRNSPDATVALAFDGISMEADDAHAANGNGAAPAGLRIRRPKDYI-VPAVVEDPNYDPDS 345
Query: 147 GVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------------------- 173
V S+VV DSP+KI + LP YL +DQ
Sbjct: 346 DVPSSVVIDSPNKISVTNLPLYLTDDQVMELLVSFGKLKSFVLVKDNGTQESRGIAFLEY 405
Query: 174 --------AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
AI GLN M LG++ L VQ+AS+G +G+
Sbjct: 406 VDPSVTNVAIQGLNNMMLGERALKVQKASIGITQVAGE 443
>gi|226532558|ref|NP_001140768.1| uncharacterized protein LOC100272843 [Zea mays]
gi|194701008|gb|ACF84588.1| unknown [Zea mays]
gi|414591744|tpg|DAA42315.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 583
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 95/218 (43%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FFN M + G G+ VL IN DK FAF+E R
Sbjct: 245 TRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 304
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AM DGI F+G +KIRRP DY QP P + +A P
Sbjct: 305 SVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGSAGG 364
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
PD +IF+GGL Y E
Sbjct: 365 LEGPD---RIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 421
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 422 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESI 459
>gi|296088196|emb|CBI35712.3| unnamed protein product [Vitis vinifera]
Length = 412
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 103/216 (47%), Gaps = 57/216 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G + G+ V+ IN +K FAF+E R
Sbjct: 145 TRHARRVYVGGLPPLANEQTIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 204
Query: 102 SIDETTQAMAFDGINFKG-QSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVI 149
S++E + AMA DGI F+ +L P DY QP+P + + AAV + GVI
Sbjct: 205 SVEEASNAMALDGIMFEACLTLIFSLPTDYNPSLAAALGPSQPSPHL-NLAAVGLMPGVI 263
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
+ P +IF+GGLP Y E+Q
Sbjct: 264 GGA--EGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDP 321
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
A A LNG+++GDK L V+RA+VG+ A +Q
Sbjct: 322 AVTDIACAALNGLKMGDKTLTVRRATVGSGQAKSEQ 357
>gi|402073699|gb|EJT69251.1| splicing factor U2AF 50 kDa subunit [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 623
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 103/216 (47%), Gaps = 58/216 (26%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL V N G TE+ ++ F N Q++ + ++ +P L CQ+ D +FA LEF
Sbjct: 290 TNSRQSKRLIVTNFAPGTTEEALVAFMNLQLNGLNVIEST-DPCLLCQMAPDSSFAILEF 348
Query: 101 RSIDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAG 147
RS ETT A+A DGI + Q L++RRP DY P V ++ G
Sbjct: 349 RSPAETTVALALDGITMEAEDTPMEGAANGTPQGLELRRPKDY-IVPAVVEDTGYE--RG 405
Query: 148 VISTVVPDSPHKIFIGGLPNYLNEDQ---------------------------------- 173
V+S+ V D+PHKI I L YL E+Q
Sbjct: 406 VVSSRVVDTPHKIGITNLAPYLTEEQVTELLVSFGELKALVLVKDSGTEESRGIAFCEYV 465
Query: 174 -------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
AI GLN M+LG+K+L V++AS+G SG
Sbjct: 466 DPVATDVAIHGLNNMELGEKRLRVKKASIGITQVSG 501
>gi|414591747|tpg|DAA42318.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 590
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 95/218 (43%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FFN M + G G+ VL IN DK FAF+E R
Sbjct: 252 TRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 311
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AM DGI F+G +KIRRP DY QP P + +A P
Sbjct: 312 SVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGSAGG 371
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
PD +IF+GGL Y E
Sbjct: 372 LEGPD---RIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 428
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 429 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESI 466
>gi|414591746|tpg|DAA42317.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 538
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 95/218 (43%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FFN M + G G+ VL IN DK FAF+E R
Sbjct: 252 TRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 311
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AM DGI F+G +KIRRP DY QP P + +A P
Sbjct: 312 SVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGSAGG 371
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
PD +IF+GGL Y E
Sbjct: 372 LEGPD---RIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 428
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 429 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESI 466
>gi|168021052|ref|XP_001763056.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685868|gb|EDQ72261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 51/203 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +F+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 162 TRHARRVYVGGLPPLANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVEMR 221
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV--VP----- 154
+++E + AMA DGI F+G S+++RRP DY P+ T + P ++ V P
Sbjct: 222 TVEEASNAMALDGIMFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGNAAG 281
Query: 155 --DSPHKIFIGGLPNYLNE----------------------------------------- 171
D P +IF+GGLP YL E
Sbjct: 282 GADGPDRIFVGGLPYYLTEIQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPSVV 341
Query: 172 DQAIAGLNGMQLGDKKLIVQRAS 194
D A A LNGM++ DK L V+RA+
Sbjct: 342 DIACATLNGMKMDDKTLNVRRAT 364
>gi|159123253|gb|EDP48373.1| splicing factor u2af large subunit [Aspergillus fumigatus A1163]
Length = 567
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 57/213 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL+V N+P GV+ + ++ FN Q++ + +P ++ QI+ D +FA LEF++
Sbjct: 237 SRQARRLFVYNLPPGVSSEHLVSLFNLQLNGLNVIHHV-DPCISAQISEDHSFALLEFKT 295
Query: 103 IDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
++ T A+AFDGI + L++RRP DY G D GV+
Sbjct: 296 PNDATVALAFDGITMEEHEPVSGAENGAPKGLEVRRPKDYIVPNGSADQ---EYQEGVLL 352
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+KI + +P Y+ E+
Sbjct: 353 NEVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADPS 412
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 413 ATAIAVEGLNGMELGDRHLKVVRASIGMTQAAG 445
>gi|146324846|ref|XP_748978.2| splicing factor u2af large subunit [Aspergillus fumigatus Af293]
gi|129556630|gb|EAL86940.2| splicing factor u2af large subunit [Aspergillus fumigatus Af293]
Length = 563
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 57/213 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL+V N+P GV+ + ++ FN Q++ + +P ++ QI+ D +FA LEF++
Sbjct: 233 SRQARRLFVYNLPPGVSSEHLVSLFNLQLNGLNVIHHV-DPCISAQISEDHSFALLEFKT 291
Query: 103 IDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
++ T A+AFDGI + L++RRP DY G D GV+
Sbjct: 292 PNDATVALAFDGITMEEHEPVSGAENGAPKGLEVRRPKDYIVPNGSADQ---EYQEGVLL 348
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+KI + +P Y+ E+
Sbjct: 349 NEVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADPS 408
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 409 ATAIAVEGLNGMELGDRHLKVVRASIGMTQAAG 441
>gi|255089803|ref|XP_002506823.1| predicted protein [Micromonas sp. RCC299]
gi|226522096|gb|ACO68081.1| predicted protein [Micromonas sp. RCC299]
Length = 554
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 106/235 (45%), Gaps = 63/235 (26%)
Query: 17 PANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL 76
PA+ E +AA AA + V TR ARR+YVG P E E+ F + G
Sbjct: 191 PADQAAHEARLAALQAAGINV---QATRHARRVYVGGFPDNTNEPELASFIANALVAIGG 247
Query: 77 AQAAGNP------VLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
A A +P VL+ IN DK FAF+EFR+++E + AMA DG+ G L++RRP+DY
Sbjct: 248 ASGAYDPDNGMTCVLSVYINRDKLFAFVEFRTVEEASNAMALDGVVMAGSQLRVRRPNDY 307
Query: 131 QP---------TPGVTDN-AAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAI----- 175
QP TP + N AAV + GV S K+++G LP YL E Q +
Sbjct: 308 QPQQAALIGPTTPADSLNLAAVGLIPGVNGQ---SSGRKLYVGNLPPYLTELQVLELLQS 364
Query: 176 ------------------------------------AGLNGMQLGDKKLIVQRAS 194
GL GM+LGDK L V+RA+
Sbjct: 365 FGAVQAFNLVVDKDTGTLKGYGFFEYADAAADEAAMEGLTGMRLGDKVLNVKRAA 419
>gi|403331270|gb|EJY64574.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 565
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 14/144 (9%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF 97
+G+ I +RRLYVG +P ++ ++++F Q + +G G+PV+ Q N +K + F
Sbjct: 183 IGTDI--HSRRLYVGGVPTSQSDVQVVQFLTQTLRKAGGILEEGDPVIKSQNNPEKRYTF 240
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP--------TPGVTDNAAVAVPAGVI 149
LE RS++E + + DGI F +L+IRRP DY D AA+ G+I
Sbjct: 241 LELRSVEEASTMIQLDGIKFMDSTLRIRRPEDYDKYPQIPPRRPIPQIDTAAL----GII 296
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ 173
ST V ++P KIF+GGLP NE+Q
Sbjct: 297 STKVEETPLKIFVGGLPKEFNEEQ 320
>gi|297302874|ref|XP_002806072.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial
[Macaca mulatta]
Length = 190
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 58/79 (73%), Gaps = 2/79 (2%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FF+
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFHA 171
Query: 70 QMHLSGLAQAAGNPVLACQ 88
QM L GL QA GNPVLA Q
Sbjct: 172 QMRLGGLTQAPGNPVLAVQ 190
>gi|358369529|dbj|GAA86143.1| splicing factor u2af large subunit [Aspergillus kawachii IFO 4308]
Length = 571
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V NIP VT + ++ FFN Q++ + ++ +P ++ Q+ D +FA LEF+S
Sbjct: 241 SRQAKRLFVYNIPQTVTGETLLAFFNVQLNGLNVIESV-DPCISAQVAQDHSFALLEFKS 299
Query: 103 IDETTQAMAFDGINFK-------------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI + Q L++RRP DY PG A GV+
Sbjct: 300 PNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDYI-VPG---GAEQEYQEGVL 355
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 356 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADP 415
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 416 SATTIAVEGLNGMELGDRHLKVVRASIGMTQAAG 449
>gi|297798226|ref|XP_002866997.1| hypothetical protein ARALYDRAFT_490965 [Arabidopsis lyrata subsp.
lyrata]
gi|297312833|gb|EFH43256.1| hypothetical protein ARALYDRAFT_490965 [Arabidopsis lyrata subsp.
lyrata]
Length = 567
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 112/252 (44%), Gaps = 57/252 (22%)
Query: 13 AGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQQ 70
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 198 AGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQV 256
Query: 71 MH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+RRP D
Sbjct: 257 MAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSD 316
Query: 130 YQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------ 173
Y P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 317 YNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL--EGPDRIFVGGLPYYFTESQVRELLE 374
Query: 174 -----------------------------------AIAGLNGMQLGDKKLIVQRASVGAK 198
A A LNG+++GDK L V+RA+ G
Sbjct: 375 SFGALKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTM 434
Query: 199 NASGQQAPVQIQ 210
+Q V +
Sbjct: 435 QPKPEQESVLLH 446
>gi|452001453|gb|EMD93912.1| hypothetical protein COCHEDRAFT_1020092 [Cochliobolus
heterostrophus C5]
Length = 352
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 54/208 (25%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRS 102
+Q++RLYV N+P G T E+MEFFN Q L+GL +G +P ++ I K +A LEF++
Sbjct: 28 KQSKRLYVHNLPSGCTSQEIMEFFNTQ--LNGLNVVSGPDPCVSAHIATSKEYAALEFKA 85
Query: 103 IDETTQAMAFDGINFKGQ-------SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPD 155
++ T A+A +GI+ + L IRRP DY TP +NA P +S+VV D
Sbjct: 86 PEDATLALAMNGISMRDDGGAPDRAGLSIRRPKDY-ITPTADENA--YPPGDEVSSVVKD 142
Query: 156 SPHKIFIGGLPNYLNEDQ-----------------------------------------A 174
SP+K+ I +P Y+ E+Q
Sbjct: 143 SPNKLSIVNIPTYIEEEQIRELVETMGKLKAFILVKDTSTDQHRGIAFCEYADNEIIDAV 202
Query: 175 IAGLNGMQLGDKKLIVQRASVGAKNASG 202
I GLN + LGD L V RA+VG + +G
Sbjct: 203 IEGLNDIPLGDGNLKVSRATVGLQQTTG 230
>gi|358391563|gb|EHK40967.1| hypothetical protein TRIATDRAFT_135674 [Trichoderma atroviride IMI
206040]
Length = 558
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 58/208 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL V N+P G ED ++ FFN Q++ + +++ +P + CQ + D+ FA LEFR+
Sbjct: 227 SRQAKRLLVSNVPSGAGEDALISFFNLQLNGLNVIESS-DPCVLCQFSADRAFAVLEFRN 285
Query: 103 IDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+ T A+A DGI+ + L IRRP DY P + D + VIS
Sbjct: 286 ASDATVALALDGISMEADDAMNGTADGVSSGLNIRRPKDYV-MPALPDE--MPFDPEVIS 342
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VVPD+ HK+ I +P++L E+Q
Sbjct: 343 NVVPDTVHKLCITNIPSFLTEEQVIELLAAFGKPKAFVLVKDQSTEESRGIAFTEYLEPS 402
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVG 196
A+ LNGM +G KKL V +AS+G
Sbjct: 403 SANEPALNSLNGMDVGGKKLKVTKASIG 430
>gi|9858779|gb|AAG01126.1|AF273333_11 BAC19.11 [Solanum lycopersicum]
Length = 532
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 113/252 (44%), Gaps = 66/252 (26%)
Query: 10 TGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
T AGQ+P ++ + P+ TR ARR+YVG +P N+
Sbjct: 175 TDVAGQVPGTT---NPSIPGMFSNMFPLAAGQATRHARRVYVGGLPPTA---------NE 222
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
Q+ L L + +G+ V+ IN +K FAF+E RS++E + AMA DG+ F+G +K+RRP D
Sbjct: 223 QV-LKILLKFSGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSD 281
Query: 130 YQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------ 173
Y P+ T + AAV + G S+ + P +IF+GGLP Y E Q
Sbjct: 282 YNPSLAATLGPSQPSPNLNLAAVGLTPG--SSGGLEGPDRIFVGGLPYYFTESQIRELLE 339
Query: 174 -----------------------------------AIAGLNGMQLGDKKLIVQRASVGAK 198
A A LNG+++GDK L V+RA+ G
Sbjct: 340 SFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTT 399
Query: 199 NASGQQAPVQIQ 210
+ +Q V +
Sbjct: 400 QPNPEQESVLLH 411
>gi|358378060|gb|EHK15743.1| hypothetical protein TRIVIDRAFT_79964 [Trichoderma virens Gv29-8]
Length = 503
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 98/209 (46%), Gaps = 60/209 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAAGNPVLACQINLDKNFAFLEFR 101
+RQA+RL V N+P VT+D ++ FFN + L+GL + +P + Q + DK FA LEFR
Sbjct: 172 SRQAKRLLVSNVPSSVTDDALISFFN--LQLNGLNVIDSSDPCVLSQFSQDKAFAVLEFR 229
Query: 102 SIDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
+ + T A+A DGI + L IRRP DY P + D + VI
Sbjct: 230 NASDATVALALDGITMEADDAQNGTANGGNHGLVIRRPKDYV-MPALPDE--MPYDPEVI 286
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
S VVPD+ HK+ I +P++LNEDQ
Sbjct: 287 SNVVPDTVHKLCITNIPSFLNEDQVIELLAAFGKPKAFVLVKDRSTEESRGIAFTEYLEP 346
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVG 196
A+ LNGM +G KKL V +AS+G
Sbjct: 347 STANEPALNSLNGMDVGGKKLKVTKASIG 375
>gi|47201140|emb|CAF88437.1| unnamed protein product [Tetraodon nigroviridis]
Length = 351
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 2 GVNNEVLNTGAAGQIP--ANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVT 59
G+ + L AAGQIP A VPV GS +TRQARRLYVGN PFG+T
Sbjct: 93 GLPSVSLWPPAAGQIPNYGAAGHGRQRGRGGAPTPVPVAGSQMTRQARRLYVGNNPFGLT 152
Query: 60 EDEMME-------------------------------FFNQQMHLSGLAQAAGNPVL--- 85
E F Q G A G +
Sbjct: 153 EVRRGRRPPAGAGAQAALLSSGVHGRVLQRADAAGGTFAGSQQPGPGGADQPGQELCLPG 212
Query: 86 ---ACQINLD----KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
Q D + + +FRS+DETTQAMAFDGI F+GQ+LKIRRPHDY+P PG+++
Sbjct: 213 GASGLQRRPDAQTLQPMSVFQFRSVDETTQAMAFDGIVFQGQALKIRRPHDYRPLPGISE 272
Query: 139 NAAVAVP 145
A VP
Sbjct: 273 QPAFHVP 279
>gi|156070782|gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]
Length = 506
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 57/223 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+ M+ + G G+ V+ IN +K FAF+E R
Sbjct: 170 TRHARRVYVGGLPSSANEQSVATFFSHVMYAIGGNTAGPGDAVIDVYINHEKKFAFVEMR 229
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DG+ F+G+ +++RRP DY QP+P + + AAV + G S
Sbjct: 230 SVEEASNAMALDGVIFEGEPVRVRRPSDYNASLAATLGPSQPSPNL-NLAAVGLTPG--S 286
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
+ + P IFIGGLP+Y E Q
Sbjct: 287 SGGLEGPDCIFIGGLPDYFTEAQIRELLESFGPLRGFNLVKDRESGNSKGHAFFVYQDVS 346
Query: 174 ----AIAGLNGMQ-LGDKKLIVQRASVGAKNASGQQAPVQIQV 211
A LNG++ + DK LIV+RA+ G + + +Q V Q+
Sbjct: 347 VTEIACGALNGIKIMHDKTLIVRRANQGTQQLNPEQESVLQQI 389
>gi|169602913|ref|XP_001794878.1| hypothetical protein SNOG_04461 [Phaeosphaeria nodorum SN15]
gi|160706286|gb|EAT88221.2| hypothetical protein SNOG_04461 [Phaeosphaeria nodorum SN15]
Length = 594
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 55/209 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
++Q++RLYV N+P G T +E++EFFN + L+GL +G +P L+ QI K +A LEF+
Sbjct: 270 SKQSKRLYVHNLPSGTTSEELLEFFN--LQLNGLNVVSGQDPCLSAQIASSKTYAALEFK 327
Query: 102 SIDETTQAMAFDGINFKGQ-------SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVP 154
+ ++ T A+A GI+ + L IRRP DY TP +N A P +S+VV
Sbjct: 328 TPEDATVALAMSGISMRDDGGGPDRSGLSIRRPKDY-ITPSADEN---AYPGDEVSSVVK 383
Query: 155 DSPHKIFIGGLPNYLNEDQ----------------------------------------- 173
DSP+K+ I +P ++ E+Q
Sbjct: 384 DSPNKLSIVNIPTFIEEEQIRELVETMGKLNAFVLVKDISSEQHRGIAFCEYADNEVVNA 443
Query: 174 AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
I GLN + LG+ L V RA+VG + +G
Sbjct: 444 VIEGLNDITLGEGNLKVSRATVGMQQNAG 472
>gi|242037001|ref|XP_002465895.1| hypothetical protein SORBIDRAFT_01g047730 [Sorghum bicolor]
gi|241919749|gb|EER92893.1| hypothetical protein SORBIDRAFT_01g047730 [Sorghum bicolor]
Length = 969
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP 83
ET + + A V + TR RRL++ N+P TED++++ N + +G+ P
Sbjct: 450 ETMLVGNSLTADSVQLTQATRPLRRLHIENLPDSATEDKLIDCLNDFLLPTGIKPQRSKP 509
Query: 84 VLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVA 143
L+C IN +K AF+EF + ++ T A++FDG + G +L+IRRP +Y T VT A
Sbjct: 510 CLSCTINREKRQAFVEFLTPEDATAALSFDGRSLNGSTLRIRRPKEYVETVNVTPKKP-A 568
Query: 144 VPAGVISTVVPDSPHKIFIGGLPNYLNED 172
+IS VV DSPHKIFI G+ ++ +
Sbjct: 569 EETALISDVVADSPHKIFIAGIAGVISSE 597
>gi|238482353|ref|XP_002372415.1| splicing factor u2af large subunit [Aspergillus flavus NRRL3357]
gi|220700465|gb|EED56803.1| splicing factor u2af large subunit [Aspergillus flavus NRRL3357]
Length = 556
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V N+P T + ++ FFN Q++ + + +P ++ Q++ D++FA LEF++
Sbjct: 226 SRQAKRLFVSNLPASATGENLLSFFNLQLNGLNVIHSV-DPCISAQVSDDRSFALLEFKT 284
Query: 103 IDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI Q L++RRP DY V GV+
Sbjct: 285 PNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDYI----VPSGNEQEYQEGVL 340
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 341 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDGSTEESRGIAFCEYADP 400
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 401 NATSIAVEGLNGMELGDRHLKVVRASIGITQAAG 434
>gi|22655131|gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
Length = 589
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 106/239 (44%), Gaps = 54/239 (22%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQA 79
++P + A V + TR A R+YVG +P E + FF+Q M + G
Sbjct: 229 MVPGQQLGALPVLPVQAMTQQATRHAPRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAG 288
Query: 80 AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT-- 137
G+ V+ IN +K FAF+E RS++E + AMA DGI +G +K+RRP DY P+ T
Sbjct: 289 PGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLG 348
Query: 138 --------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
+ AV + +G ST + P +IF+GGLP Y E
Sbjct: 349 PSQPNPNLNLGAVGLSSG--STGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNL 406
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA GA +Q V
Sbjct: 407 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEV 465
>gi|451849636|gb|EMD62939.1| hypothetical protein COCSADRAFT_200575 [Cochliobolus sativus
ND90Pr]
Length = 576
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 54/208 (25%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRS 102
+Q++RLYV N+P G T E+MEFFN Q L+GL +G +P ++ I K +A LEF++
Sbjct: 252 KQSKRLYVHNLPSGCTSQEIMEFFNTQ--LNGLNVVSGPDPCVSAHIATSKEYAALEFKA 309
Query: 103 IDETTQAMAFDGINFKGQ-------SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPD 155
++ T A+A +GI+ + L IRRP DY TP +NA P +S+VV D
Sbjct: 310 PEDATLALAMNGISMRDDGGAPDRAGLSIRRPKDYI-TPTADENA--YPPGDEVSSVVKD 366
Query: 156 SPHKIFIGGLPNYLNEDQ-----------------------------------------A 174
SP+K+ I +P Y+ E+Q
Sbjct: 367 SPNKLSIVNIPTYIEEEQIRELVETMGKLKAFILVKDTSTDQHRGIAFCEYADNEIIDAV 426
Query: 175 IAGLNGMQLGDKKLIVQRASVGAKNASG 202
I GLN + LGD L V RA+VG + +G
Sbjct: 427 IEGLNDIPLGDGNLKVSRATVGLQQTTG 454
>gi|83765203|dbj|BAE55346.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 563
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V N+P T + ++ FFN Q++ + + +P ++ Q++ D++FA LEF++
Sbjct: 229 SRQAKRLFVSNLPASATGENLLSFFNLQLNGLNVIHSV-DPCISAQVSDDRSFALLEFKT 287
Query: 103 IDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI Q L++RRP DY V GV+
Sbjct: 288 PNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDYI----VPSGNEQEYQEGVL 343
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 344 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDGSTEESRGIAFCEYADP 403
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 404 NATSIAVEGLNGMELGDRHLKVVRASIGITQAAG 437
>gi|242803779|ref|XP_002484243.1| splicing factor u2af large subunit [Talaromyces stipitatus ATCC
10500]
gi|218717588|gb|EED17009.1| splicing factor u2af large subunit [Talaromyces stipitatus ATCC
10500]
Length = 543
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 104/213 (48%), Gaps = 57/213 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+ N+P VTE ++ FFN Q L+GL G +P ++ QI+ D +FA LEF+
Sbjct: 213 SRQAKRLFAHNLPPNVTEAALVSFFNLQ--LNGLNVIEGIDPCVSAQISKDHSFALLEFK 270
Query: 102 SIDETTQAMAFDGINFK-----------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+ETT A+A DGI + + L++RRP DY P V ++ + VIS
Sbjct: 271 GANETTVALALDGITMEEHESAATANGGARGLELRRPKDYI-VPSVPEDQQPHQES-VIS 328
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+K+ I +P Y+ E+
Sbjct: 329 NHVPDSPNKLCITNIPLYIPEEPVTMLLKSIGELKAFVLVKDSGTDESRGIAFCEYVDAA 388
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ LNGM+LGDK L + AS+GA A+G
Sbjct: 389 STAIAVESLNGMELGDKHLKITHASIGATQAAG 421
>gi|334187224|ref|NP_001190937.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|332661290|gb|AEE86690.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 551
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 57/239 (23%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 181 GAGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQ 239
Query: 70 QMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPH 128
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+RRP
Sbjct: 240 VMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPS 299
Query: 129 DYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----- 173
DY P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 300 DYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL--EGPDRIFVGGLPYYFTESQVRELL 357
Query: 174 ------------------------------------AIAGLNGMQLGDKKLIVQRASVG 196
A A LNG+++GDK L V+RA+ G
Sbjct: 358 ESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 416
>gi|15234495|ref|NP_195387.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|75318082|sp|O23212.2|U2A2A_ARATH RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=U2 auxiliary factor 65 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit A; Short=U2 snRNP auxiliary factor large
subunit A
gi|18087531|gb|AAL58899.1|AF462805_1 At4g35590/C7A10_670 [Arabidopsis thaliana]
gi|4006898|emb|CAB16828.1| splicing factor-like protein [Arabidopsis thaliana]
gi|7270617|emb|CAB80335.1| splicing factor-like protein [Arabidopsis thaliana]
gi|23506119|gb|AAN28919.1| At4g35590/C7A10_670 [Arabidopsis thaliana]
gi|24030414|gb|AAN41365.1| putative splicing factor [Arabidopsis thaliana]
gi|332661287|gb|AEE86687.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 573
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 57/239 (23%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 203 GAGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQ 261
Query: 70 QMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPH 128
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+RRP
Sbjct: 262 VMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPS 321
Query: 129 DYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----- 173
DY P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 322 DYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL--EGPDRIFVGGLPYYFTESQVRELL 379
Query: 174 ------------------------------------AIAGLNGMQLGDKKLIVQRASVG 196
A A LNG+++GDK L V+RA+ G
Sbjct: 380 ESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 438
>gi|222423510|dbj|BAH19725.1| AT4G36690 [Arabidopsis thaliana]
Length = 565
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 57/238 (23%)
Query: 13 AGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQQ 70
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 204 AGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQV 262
Query: 71 MH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+RRP D
Sbjct: 263 MAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSD 322
Query: 130 YQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------ 173
Y P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 323 YNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL--EGPDRIFVGGLPYYFTESQVRELLE 380
Query: 174 -----------------------------------AIAGLNGMQLGDKKLIVQRASVG 196
A A LNG+++GDK L V+RA+ G
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 438
>gi|407929464|gb|EKG22293.1| hypothetical protein MPH_00360 [Macrophomina phaseolina MS6]
Length = 824
Score = 99.8 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 59/232 (25%)
Query: 30 AAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQ 88
A +A + + +RQA+RL+V N P T+D + +FFN Q+ HL+ ++ + +P ++ Q
Sbjct: 5 AGSANASALKPSNSRQAKRLFVYNFPAASTDDSIQDFFNLQLNHLNVISSS--DPCISVQ 62
Query: 89 INLDKNFAFLEFRSIDETTQAMAFDGINFKGQS------------LKIRRPHDYQPTPGV 136
I+ D+ FA EF++ ++TT A+A DG + + + +KI RP DY P
Sbjct: 63 ISKDRTFALCEFKTPEDTTMALALDGQSMEAEDASNGASNGGHSGIKISRPKDY-IVPAQ 121
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------------- 173
+D+A GV+S V D PHKI + +P YL E+Q
Sbjct: 122 SDDADYQ--EGVVSNKVKDGPHKICVAQIPVYLTEEQVMDLLSAFGGLKAFTLVKDTGTD 179
Query: 174 ------------------AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
A+ GL+GM++ L V++A VG + ASG + V
Sbjct: 180 QSKGIAFCEYVDPDTTDPAVEGLDGMEIAQDHLKVKKACVGIQQASGLEMGV 231
>gi|317139209|ref|XP_001817348.2| splicing factor u2af large subunit [Aspergillus oryzae RIB40]
Length = 538
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V N+P T + ++ FFN Q++ + + +P ++ Q++ D++FA LEF++
Sbjct: 208 SRQAKRLFVSNLPASATGENLLSFFNLQLNGLNVIHSV-DPCISAQVSDDRSFALLEFKT 266
Query: 103 IDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI Q L++RRP DY V GV+
Sbjct: 267 PNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDYI----VPSGNEQEYQEGVL 322
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 323 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDGSTEESRGIAFCEYADP 382
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 383 NATSIAVEGLNGMELGDRHLKVVRASIGITQAAG 416
>gi|391864554|gb|EIT73849.1| splicing factor U2AF, large subunit [Aspergillus oryzae 3.042]
Length = 538
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 59/214 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V N+P T + ++ FFN Q++ + + +P ++ Q++ D++FA LEF++
Sbjct: 208 SRQAKRLFVSNLPASATGENLLSFFNLQLNGLNVIHSV-DPCISAQVSDDRSFALLEFKT 266
Query: 103 IDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T A+AFDGI Q L++RRP DY V GV+
Sbjct: 267 PNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDYI----VPSGNEQEYQEGVL 322
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
VPDSP+KI + +P+Y+ E+
Sbjct: 323 LNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGELKSFVLVKDGSTEESRGIAFCEYADP 382
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 383 NATSIAVEGLNGMELGDRHLKVVRASIGITQAAG 416
>gi|30690730|ref|NP_849509.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|19310597|gb|AAL85029.1| putative splicing factor [Arabidopsis thaliana]
gi|332661289|gb|AEE86689.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 542
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 57/238 (23%)
Query: 13 AGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQQ 70
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 204 AGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQV 262
Query: 71 MH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+RRP D
Sbjct: 263 MAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSD 322
Query: 130 YQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------ 173
Y P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 323 YNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL--EGPDRIFVGGLPYYFTESQVRELLE 380
Query: 174 -----------------------------------AIAGLNGMQLGDKKLIVQRASVG 196
A A LNG+++GDK L V+RA+ G
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 438
>gi|320170643|gb|EFW47542.1| splicing factor u2af large subunit [Capsaspora owczarzaki ATCC
30864]
Length = 393
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 15/145 (10%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQ+RRLY+G I G + +++F N++M+ G+ + GNPVLA Q+ DKNFAFL+ R+
Sbjct: 98 RQSRRLYIGGIVPGTPDVLIVDFLNREMNQRGMTSSPGNPVLAIQMTPDKNFAFLDMRTS 157
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVP--------- 154
+E T +A DGI F+G +I+RP +Y+ + +P+
Sbjct: 158 EEATMCIALDGIPFEGTVFRIKRPKEYEGREANDPPSLFGMPSSSGGGFSSQGGAQGGSF 217
Query: 155 ------DSPHKIFIGGLPNYLNEDQ 173
D+P+KI+IGGLP L+E Q
Sbjct: 218 GGSMGNDNPNKIYIGGLPFSLDEQQ 242
>gi|401402634|ref|XP_003881297.1| rna recognition motif (RRM)-containing protein,related [Neospora
caninum Liverpool]
gi|325115709|emb|CBZ51264.1| rna recognition motif (RRM)-containing protein,related [Neospora
caninum Liverpool]
Length = 555
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 71/213 (33%)
Query: 52 GNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMA 111
GN+P VT+ E+ ++FN+ ++ + G+ ++ +N + FAFLE RSI+E +
Sbjct: 16 GNLPVPVTQGEVQQYFNELLNSLLPQKVPGDTIVHVYVNPARRFAFLEHRSIEEANFTLG 75
Query: 112 FDGINFKGQSLKIRRPHDYQPT---------------------PGVTDNAAVAVPA---- 146
DG++++ +L +RRP DY PT P + A A PA
Sbjct: 76 LDGVSWRNCALSLRRPQDYNPTLADQQYREERARLGSMTGFAVPPPSQAATPAAPAESSL 135
Query: 147 -----GVISTVVPDSPHKIFIGGLPNYLNE------------------------------ 171
G++ST VPDSPHKIFIGGLP+ + E
Sbjct: 136 IAGALGIVSTTVPDSPHKIFIGGLPHSITEQGCKQLLEAFGQLRALHVVKDQQRGDCKGF 195
Query: 172 -----------DQAIAGLNGMQLGDKKLIVQRA 193
D A+AGLN M++ D+ L V+RA
Sbjct: 196 AFCEYLDPNVTDVAVAGLNNMRIADRVLQVRRA 228
>gi|346324367|gb|EGX93964.1| splicing factor u2af large subunit [Cordyceps militaris CM01]
Length = 583
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 49/227 (21%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL V +IP G TED ++ FFN Q++ + +A +P CQ++ DK+FA LEF++
Sbjct: 263 SRQARRLLVSDIPSGTTEDALVAFFNLQLNGLNVIEAT-DPCALCQLSNDKSFAVLEFKN 321
Query: 103 IDETTQAMAFDGINFKGQS--LKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
+ T A+A DG + + L IRRP DY P V D + V+S VPD+ HK+
Sbjct: 322 TGDATVALALDGSSMVADTPGLSIRRPKDYV-MPAVPDE--IIFNPEVVSNSVPDTIHKL 378
Query: 161 FIGGLPNYLNEDQ------------------------------------------AIAGL 178
I +P +L EDQ A+ L
Sbjct: 379 CITNIPPFLTEDQVLELLAAFGKPKAFVLVKERSTEESRGIAFAEYVEPTNANEPALNTL 438
Query: 179 NGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
NGM +G KKL ++A VG + A + + L G G AT
Sbjct: 439 NGMDVGGKKLKARKACVGGTQVANFDAGINA-ISNLAGQGNGGDATR 484
>gi|336274240|ref|XP_003351874.1| hypothetical protein SMAC_00421 [Sordaria macrospora k-hell]
gi|380096157|emb|CCC06204.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 594
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 52/213 (24%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL V NIP T++ ++ FFN Q++ + + +P + CQI+ D +FA +EF
Sbjct: 264 TNSRQSKRLIVSNIPPSATDESLLGFFNLQLNGLNVIDSV-DPCVQCQISPDHSFAMVEF 322
Query: 101 RSIDETTQAMAFDGINFKGQS---------LKIRRPHDYQPTPGVTDNAAVAVPAGVIST 151
R+ + T A+A DGI + LKIRRP DY P + ++ + V S
Sbjct: 323 RNSPDATVALALDGITMEADDANDAASAGGLKIRRPKDYI-VPAIVEDPNYDPDSEVPSN 381
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
+V DSP+KI + +P YL E+Q
Sbjct: 382 IVIDSPNKISVTNIPAYLTEEQIMELLVAFGKLKSFVLVKDKHTEESRGIAFCEYHDSSV 441
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
AI GLN M LGD+ L VQ+AS G + +G+
Sbjct: 442 TSVAIDGLNNMMLGDRALKVQKASYGIQQVAGE 474
>gi|42573197|ref|NP_974695.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|332661288|gb|AEE86688.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 565
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 57/238 (23%)
Query: 13 AGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQQ 70
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 204 AGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQV 262
Query: 71 MH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+RRP D
Sbjct: 263 MAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSD 322
Query: 130 YQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ------ 173
Y P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 323 YNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL--EGPDRIFVGGLPYYFTESQVRELLE 380
Query: 174 -----------------------------------AIAGLNGMQLGDKKLIVQRASVG 196
A A LNG+++GDK L V+RA+ G
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 438
>gi|219116422|ref|XP_002179006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409773|gb|EEC49704.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 325
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 5/141 (3%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
TR ARRLYVGN+P +TED + F + + ++ + +PVL+ IN ++ F F+EF++
Sbjct: 4 TRHARRLYVGNLPPHITEDAIHVEFRRAIEIASPTPLSEDPVLSTYINHERRFCFVEFKT 63
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPT--PGVTDNAAVAVPA---GVISTVVPDSP 157
++ T M DG++ +G +K++RP+DY P + +A + G++S V D P
Sbjct: 64 VEMATACMNLDGLHVQGVPVKVKRPNDYNANMAPKIHPSALPPLDVSKLGIVSGTVEDGP 123
Query: 158 HKIFIGGLPNYLNEDQAIAGL 178
+KIFIGGL +L + Q + L
Sbjct: 124 NKIFIGGLHYHLQDSQVMELL 144
>gi|367020820|ref|XP_003659695.1| hypothetical protein MYCTH_2297048 [Myceliophthora thermophila ATCC
42464]
gi|347006962|gb|AEO54450.1| hypothetical protein MYCTH_2297048 [Myceliophthora thermophila ATCC
42464]
Length = 567
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 100/217 (46%), Gaps = 56/217 (25%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
T +RQ++RL V N+P TE+ ++ FFN Q++ + + A +P L I D++FA LEF
Sbjct: 233 TNSRQSKRLIVSNLPPSATEESLVNFFNLQLNGLNVIETA-DPCLQAHIAPDRSFAMLEF 291
Query: 101 RSIDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAG 147
R + T A+A DGI + Q L +RRP DY P V ++ +
Sbjct: 292 RHNTDATVALALDGITMEAEDADAANGNGAATQGLHLRRPKDYI-VPAVVEDPNYDPDSD 350
Query: 148 VISTVVPDSPHKIFIGGLPNYLNEDQ---------------------------------- 173
S+VV DSP+KI + LP YL +DQ
Sbjct: 351 TPSSVVLDSPNKISVTNLPLYLTDDQVMELLVSFGKLKSFVLVKDNGTQESRGIAFLEYA 410
Query: 174 -------AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
A+ GLN M LG++ L VQ+AS+G SG+
Sbjct: 411 DPSATNVAVQGLNNMMLGERALKVQKASIGITQVSGE 447
>gi|413956976|gb|AFW89625.1| hypothetical protein ZEAMMB73_282398 [Zea mays]
Length = 635
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 25 TTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPV 84
T +A + A V + TR RRL++ N+P TED++++ N + +G P
Sbjct: 112 TMLAGNSLTADSVQLTQATRPLRRLHIENLPDSATEDKLIDCLNDFLLSTGSKLQRSKPC 171
Query: 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAV 144
L+C IN +K AF+EF + ++ T A++FDG + G L+IRRP +Y T VT A
Sbjct: 172 LSCTINREKRQAFVEFLTPEDATAAISFDGRSLNGSVLRIRRPKEYVETVNVTPKKAEET 231
Query: 145 PAGVISTVVPDSPHKIFIGGL 165
+IS VV DSP+KIFI G+
Sbjct: 232 --ALISDVVADSPYKIFIAGI 250
>gi|342873171|gb|EGU75391.1| hypothetical protein FOXB_14096 [Fusarium oxysporum Fo5176]
Length = 661
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 59/208 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAAGNPVLACQINLDKNFAFLEFR 101
+RQ++RL V IP G +E+ +M FFN + L+GL +P + CQ + D++FA +EF+
Sbjct: 242 SRQSKRLLVSRIPSGTSEEALMSFFN--LQLNGLNVIDTTDPCVLCQFSNDRSFAVIEFK 299
Query: 102 SIDETTQAMAFDGINFKG-----------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
E T A+A DGI+ + + L+IRRP DY P VT+ V+ + V+S
Sbjct: 300 DAPEATVALAMDGISMEASDASNGTDGGHRGLEIRRPRDYV-VPAVTEE--VSYDSEVVS 356
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
+VPD+ +K+ I +P +L E+Q
Sbjct: 357 NIVPDTVNKLSITNIPTFLTEEQIIELLASFGKPKAFVLVKDRGTEESRGIAFAEYQDPA 416
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVG 196
A+ LNGM++G KKL V +AS+G
Sbjct: 417 ASNPTALDTLNGMEIGGKKLKVSKASIG 444
>gi|302916595|ref|XP_003052108.1| hypothetical protein NECHADRAFT_38412 [Nectria haematococca mpVI
77-13-4]
gi|256733047|gb|EEU46395.1| hypothetical protein NECHADRAFT_38412 [Nectria haematococca mpVI
77-13-4]
Length = 564
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 100/208 (48%), Gaps = 59/208 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAAGNPVLACQINLDKNFAFLEFR 101
+RQ++RL V IP G +E+ ++ FFN + L+GL A +P + CQ + D++FA LEFR
Sbjct: 221 SRQSKRLLVSKIPSGTSEEALISFFN--LQLNGLNVIDATDPCILCQFSNDRSFAVLEFR 278
Query: 102 SIDETTQAMAFDGI-----------NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
E T A+A DG N + + L+IRRP DY P VT+ V+ V+S
Sbjct: 279 EASEATVALALDGTSMEPDDANGASNGESRGLEIRRPRDYV-VPAVTEE--VSYNPDVVS 335
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
+VPD+ +K+ I +P +L EDQ
Sbjct: 336 NIVPDTINKLCITNIPPFLAEDQVIELLAAFGKPKAFVLVKDRGTEESRGIAFAEYQDPN 395
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVG 196
A+ LNGM +G KKL V +AS+G
Sbjct: 396 AANPTALDTLNGMDVGGKKLKVTKASIG 423
>gi|412990165|emb|CCO19483.1| predicted protein [Bathycoccus prasinos]
Length = 495
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 75/227 (33%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQ-MHLSGLAQAA----GNPVLACQINLDKNFAF 97
TR ARR+YVG P V+E + +FFN M + G+A+ NPV+ +N +K+FAF
Sbjct: 123 TRHARRVYVGGFPPNVSEVRVADFFNNALMAVGGIAETQTEGNANPVVNVYMNHEKHFAF 182
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-QPTP-----------------GVTDN 139
+EFR+ +ET+ MA D I+F L++RRP+DY QP G+++
Sbjct: 183 VEFRNAEETSNCMALDSISFDSSQLRVRRPNDYNQPAAMKLGPIVPNIKMNLEAIGLSNE 242
Query: 140 AAVAVPAGVI----------STVVPDSPHKIFIGGLPNYLNE------------------ 171
+ +GV S V + ++F+GGLP +L E
Sbjct: 243 VLQRMQSGVASGQNNGNANGSNVADPNEDRVFVGGLPYFLTEAQIRELLEAFGPITRFDL 302
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRAS 194
D AI GL+GMQ+GDK+L V+RA+
Sbjct: 303 VRDRDTGGSKGYGFVVYRDGPAITDIAIQGLHGMQMGDKQLTVRRAN 349
>gi|357455537|ref|XP_003598049.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355487097|gb|AES68300.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 627
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 109/243 (44%), Gaps = 61/243 (25%)
Query: 10 TGAAGQIPA---NVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMM 64
TGA+ IP N+ T +A +PV T TR ARR+YVG + E +
Sbjct: 246 TGASPAIPGMFPNMFPLPTNQPFSALPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVA 305
Query: 65 EFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 123
FF+Q M + G G+ V+ IN DK FAF+E RS++E + AMA DGI F+G +K
Sbjct: 306 TFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 365
Query: 124 IRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED 172
+RRP DY QP P + + V + G + D P +IF+GG+P Y E
Sbjct: 366 VRRPTDYNPSLAAALGPSQPNPNL-NLGLVGLSPGSAGGL--DGPDRIFVGGVPYYFTET 422
Query: 173 Q-----------------------------------------AIAGLNGMQLGDKKLIVQ 191
Q A A LNG+++GDK L V+
Sbjct: 423 QIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVR 482
Query: 192 RAS 194
RA+
Sbjct: 483 RAN 485
>gi|387193280|gb|AFJ68695.1| splicing factor U2AF 65 kDa subunit [Nannochloropsis gaditana
CCMP526]
Length = 424
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 108/238 (45%), Gaps = 71/238 (29%)
Query: 22 IPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTED-EMMEFFNQQMHLSGLAQ 78
+P+T V A VP+ G T TR ARR+YVG FG D E++ FFNQ ++ S
Sbjct: 67 LPQTAVTGA----VPMYGDTQQSTRHARRVYVGG-NFGDASDFEVLAFFNQIINESLERP 121
Query: 79 AAGNPVLACQINLDKNFAFLEFRSIDETTQA-MAFDGINFKGQSLKIRRPHDYQPTPGVT 137
+ PV+A Q+N K+FAFLE S+ TT M DG+ F+G LK++RP DY P
Sbjct: 122 SPAGPVVAIQVNRQKHFAFLELNSVPLTTSVIMQLDGVPFRGNPLKVKRPTDYHPELLPL 181
Query: 138 D---------------NAAVAVPAGVI------STVVPDSPHKIFIGGLPNYLNEDQ--- 173
D A+ A+P + VPDSP+KIF+GGLP ++ +DQ
Sbjct: 182 DTPPPPTLKVANFRALQASGALPMASTGLTAPGANSVPDSPYKIFVGGLPYHVTDDQVRE 241
Query: 174 --------------------------------------AIAGLNGMQLGDKKLIVQRA 193
AI GL+GM LG K L V+ A
Sbjct: 242 LLSAFGPLRGFDLKKDPATGMSKGYGFCEYIDHAVGDVAIQGLHGMDLGGKTLTVKYA 299
>gi|398403643|ref|XP_003853288.1| hypothetical protein MYCGRDRAFT_100024 [Zymoseptoria tritici
IPO323]
gi|339473170|gb|EGP88264.1| hypothetical protein MYCGRDRAFT_100024 [Zymoseptoria tritici
IPO323]
Length = 544
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 104/216 (48%), Gaps = 61/216 (28%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRS 102
RQ++RL V N+P T+D +M+FFN + L+GL G +P ++ I+ +A LEF++
Sbjct: 214 RQSKRLLVYNLPASATDDSLMDFFN--LQLNGLNVTKGADPCISANISQGNGYALLEFKT 271
Query: 103 IDETTQAMAFDGINFK-------GQS------LKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T AMA DGI + G+S L+I+RP DY P V+D +G+
Sbjct: 272 PEDATNAMAMDGIKMEADVDMGNGESNGTSKGLEIKRPKDY-IVPTVSDETENT--SGLF 328
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
S++VPD+ +KI I +P YL E+Q
Sbjct: 329 SSIVPDTQNKISITNIPVYLQEEQVVELLTSFGQLKNFVLVKDKSTEESRGIAFVEYKDP 388
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
A+ LNGM LGD L V+ AS+G + SG+
Sbjct: 389 DSTTKIALEALNGMDLGDAALKVKLASIGIQQVSGE 424
>gi|357455533|ref|XP_003598047.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355487095|gb|AES68298.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 626
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 109/245 (44%), Gaps = 63/245 (25%)
Query: 10 TGAAGQIPANV--IIPETTVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGVTEDE 62
TGA+ IP + P T +A+PV+ TR ARR+YVG + E
Sbjct: 246 TGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQATRHARRVYVGGLSPTANEQS 305
Query: 63 MMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121
+ FF+Q M + G G+ V+ IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 306 VATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAP 365
Query: 122 LKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN 170
+K+RRP DY QP P + + V + G + D P +IF+GG+P Y
Sbjct: 366 VKVRRPTDYNPSLAAALGPSQPNPNL-NLGLVGLSPGSAGGL--DGPDRIFVGGVPYYFT 422
Query: 171 EDQ-----------------------------------------AIAGLNGMQLGDKKLI 189
E Q A A LNG+++GDK L
Sbjct: 423 ETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLT 482
Query: 190 VQRAS 194
V+RA+
Sbjct: 483 VRRAN 487
>gi|357455535|ref|XP_003598048.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355487096|gb|AES68299.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 629
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 109/245 (44%), Gaps = 63/245 (25%)
Query: 10 TGAAGQIPANV--IIPETTVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGVTEDE 62
TGA+ IP + P T +A+PV+ TR ARR+YVG + E
Sbjct: 246 TGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQATRHARRVYVGGLSPTANEQS 305
Query: 63 MMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121
+ FF+Q M + G G+ V+ IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 306 VATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAP 365
Query: 122 LKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN 170
+K+RRP DY QP P + + V + G + D P +IF+GG+P Y
Sbjct: 366 VKVRRPTDYNPSLAAALGPSQPNPNL-NLGLVGLSPGSAGGL--DGPDRIFVGGVPYYFT 422
Query: 171 EDQ-----------------------------------------AIAGLNGMQLGDKKLI 189
E Q A A LNG+++GDK L
Sbjct: 423 ETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLT 482
Query: 190 VQRAS 194
V+RA+
Sbjct: 483 VRRAN 487
>gi|340500276|gb|EGR27170.1| splicing factor u2af large subunit, putative [Ichthyophthirius
multifiliis]
Length = 201
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG-LAQAA--GNPVLACQINLDKNFAFLEF 100
R ARRLY+GNIP + ++ + E+ + + +G L + NP++ C+I+ FAF+E
Sbjct: 22 RHARRLYIGNIPDSINQEYLSEWLYRSLEAAGGLVDSLPNENPIIKCEIDSKGKFAFIEI 81
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAV---------AVPAGVIST 151
R+I+ETT + DGI + L+IRRP +Y+ P + N V + +I T
Sbjct: 82 RTIEETTTLLQLDGIILWHRQLRIRRPTEYEKFPQIYPNYNVKKLNLDLFKTIGIVIIPT 141
Query: 152 VVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLG 184
VV D P+KIF+ LP ++E + L ++G
Sbjct: 142 VVDDGPNKIFLANLPTQMDELMILDELKLREMG 174
>gi|400602736|gb|EJP70338.1| splicing factor U2AF 65 kDa subunit [Beauveria bassiana ARSEF 2860]
Length = 576
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAAGNPVLACQINLDKNFAFLEFR 101
+RQA+RL V N+P G T+D ++ FFN + L+GL +A +P Q++ DK+FA LEF+
Sbjct: 256 SRQAKRLLVSNLPSGTTDDALVAFFN--LQLNGLNVISATDPCALSQLSNDKSFAVLEFK 313
Query: 102 SIDETTQAMAFDGINFK--GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
+ + T A+A DGI+ + G L IRRP DY P V D+ + V+S VPD+ HK
Sbjct: 314 NTSDATVALALDGISMEANGPGLSIRRPKDYV-MPAVPDD--IMYNPDVVSDSVPDTIHK 370
Query: 160 IFIGGLPNYLNEDQAIAGL 178
+ I LP +L E+Q + L
Sbjct: 371 LSITNLPPFLTEEQVLELL 389
>gi|46125343|ref|XP_387225.1| hypothetical protein FG07049.1 [Gibberella zeae PH-1]
Length = 564
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 59/208 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAAGNPVLACQINLDKNFAFLEFR 101
+RQ++RL V IP G +ED ++ FFN + L+GL +P + CQ + D++FA +EF+
Sbjct: 224 SRQSKRLLVSRIPPGTSEDALIAFFN--LQLNGLNVIDTTDPCVLCQFSNDRSFAVIEFK 281
Query: 102 SIDETTQAMAFDGINFKG-----------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
ETT A+A DGI+ + + L+IRRP DY P VT++ VA V+S
Sbjct: 282 DAPETTVALALDGISMEANDASNGADGGHRGLEIRRPRDYV-VPAVTED--VAYDPEVVS 338
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VVPD+ +K+ I +P +L E+Q
Sbjct: 339 NVVPDTVNKLSITNIPPFLTEEQIIELLASFGKPKAFVLVKDRGTEESRGIAFAEYQDPA 398
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVG 196
A+ LNGM +G K++ V +AS+G
Sbjct: 399 VSNPTALDTLNGMDIGGKQIKVSKASIG 426
>gi|67541022|ref|XP_664285.1| hypothetical protein AN6681.2 [Aspergillus nidulans FGSC A4]
gi|40738434|gb|EAA57624.1| hypothetical protein AN6681.2 [Aspergillus nidulans FGSC A4]
Length = 624
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 58/212 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V N+P T + ++ FFN Q++ + Q+ +P ++ QI+ D +FA LEF+S
Sbjct: 220 SRQAKRLFVYNLPPNATVENLVSFFNLQLNGLNVIQSV-DPCISAQISDDHSFALLEFKS 278
Query: 103 IDETTQAMAFDGI----------NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
++TT A+A DGI N + L++RRP DY + N A G
Sbjct: 279 PNDTTVALALDGITMGEHESNGENGAAKGLEVRRPKDY-----IVPNLAEQDLEGASGMK 333
Query: 153 -VPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
VPDSP+KI + +P Y+ E+
Sbjct: 334 DVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADPNT 393
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 394 TTIAVQGLNGMELGDRHLKVVRASIGMTQAAG 425
>gi|408397958|gb|EKJ77095.1| hypothetical protein FPSE_02739 [Fusarium pseudograminearum CS3096]
Length = 554
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 59/208 (28%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAAGNPVLACQINLDKNFAFLEFR 101
+RQ++RL V IP G +ED ++ FFN + L+GL +P + CQ + D++FA +EF+
Sbjct: 224 SRQSKRLLVSRIPPGTSEDTLIAFFN--LQLNGLNVIDTTDPCVLCQFSNDRSFAVIEFK 281
Query: 102 SIDETTQAMAFDGINFKG-----------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
ETT A+A DGI+ + + L+IRRP DY P VT++ VA V+S
Sbjct: 282 DAPETTVALALDGISMEANDASNGADGGHRGLEIRRPRDYV-VPAVTED--VAYDPEVVS 338
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VVPD+ +K+ I +P +L E+Q
Sbjct: 339 NVVPDTVNKLSITNIPPFLTEEQIIELLASFGKPKAFVLVKDRGTEESRGIAFAEYQDPA 398
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVG 196
A+ LNGM +G K++ V +AS+G
Sbjct: 399 VSNPTALDTLNGMDIGGKQIKVSKASIG 426
>gi|259480265|tpe|CBF71237.1| TPA: splicing factor u2af large subunit (AFU_orthologue;
AFUA_7G05310) [Aspergillus nidulans FGSC A4]
Length = 547
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 58/212 (27%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V N+P T + ++ FFN Q++ + Q+ +P ++ QI+ D +FA LEF+S
Sbjct: 220 SRQAKRLFVYNLPPNATVENLVSFFNLQLNGLNVIQSV-DPCISAQISDDHSFALLEFKS 278
Query: 103 IDETTQAMAFDGI----------NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
++TT A+A DGI N + L++RRP DY + N A G
Sbjct: 279 PNDTTVALALDGITMGEHESNGENGAAKGLEVRRPKDY-----IVPNLAEQDLEGASGMK 333
Query: 153 -VPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
VPDSP+KI + +P Y+ E+
Sbjct: 334 DVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADPNT 393
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 394 TTIAVQGLNGMELGDRHLKVVRASIGMTQAAG 425
>gi|116192501|ref|XP_001222063.1| hypothetical protein CHGG_05968 [Chaetomium globosum CBS 148.51]
gi|88181881|gb|EAQ89349.1| hypothetical protein CHGG_05968 [Chaetomium globosum CBS 148.51]
Length = 566
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 56/215 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQ++RL + N+P VT++ + FFN Q++ + + A +P L I ++ FA +EFR+
Sbjct: 234 SRQSKRLIISNLPASVTDESLTNFFNLQLNGLNVIETA-DPCLQAHIAAERAFAMVEFRN 292
Query: 103 IDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
+ T A+A DGI+ + Q L IRRP DY P V ++ +
Sbjct: 293 NTDATVALALDGISMEADDAHAANGNGTAPQGLHIRRPKDYI-VPAVVEDPNYDPDSDRP 351
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
S+VV DSP+KI + LP YL EDQ
Sbjct: 352 SSVVVDSPNKISVTNLPLYLTEDQVMELLVSFGKLKSFVLVKDNGTEESRGIAFLEYADP 411
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
AI GL+ M LG++ L VQ+AS+G SG+
Sbjct: 412 GVTTVAIQGLHNMMLGERALKVQKASIGITQVSGE 446
>gi|108706082|gb|ABF93877.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 720
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 23 PETTVAAAAAAAVPVVGST----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA- 77
P TT+ + V S TR RRL++ N+P TED ++ N+ + S +
Sbjct: 446 PNTTIGTILTGSNLAVDSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASH 505
Query: 78 -QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
Q + P L+C IN DK AF+EF + ++ T A++FDG +F G SLKIRRP +Y V
Sbjct: 506 IQRSKQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEYVEMAHV 565
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED 172
+ +IS VV DSPHKIFI G+ ++ +
Sbjct: 566 APKKP-SEEIKLISDVVADSPHKIFIAGISGVISSE 600
>gi|146170296|ref|XP_001470832.1| hypothetical protein TTHERM_00484731 [Tetrahymena thermophila]
gi|146145092|gb|EDK31651.1| hypothetical protein TTHERM_00484731 [Tetrahymena thermophila
SB210]
Length = 471
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35 VPVV---GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA---GNPVLACQ 88
VPV+ + R ARRLY+GNIP + ++ + E+ + + +G Q + NP++ C+
Sbjct: 19 VPVIKLDNQSGYRHARRLYIGNIPETINQEYLSEWLYRSLEAAGGLQPSLPSENPIVKCE 78
Query: 89 INLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAG- 147
I+ FAF E RSI+ETT + DGI + L+IRRP +Y+ P V +P
Sbjct: 79 IDPKGRFAFTELRSIEETTALLQLDGIILWHRQLRIRRPTEYEKFPKVQGQFEANIPKLN 138
Query: 148 ----------VISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKK 187
+I T+V D P+KIF+ LP ++E + L +G+ K
Sbjct: 139 FDLFKTVGIVIIPTIVDDGPNKIFLANLPTKMDELMILDELKLRDMGEIK 188
>gi|108706081|gb|ABF93876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 704
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 23 PETTVAAAAAAAVPVVGST----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA- 77
P TT+ + V S TR RRL++ N+P TED ++ N+ + S +
Sbjct: 446 PNTTIGTILTGSNLAVDSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASH 505
Query: 78 -QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
Q + P L+C IN DK AF+EF + ++ T A++FDG +F G SLKIRRP +Y V
Sbjct: 506 IQRSKQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEYVEMAHV 565
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED 172
+ +IS VV DSPHKIFI G+ ++ +
Sbjct: 566 APKKP-SEEIKLISDVVADSPHKIFIAGISGVISSE 600
>gi|334349754|ref|XP_001379564.2| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Monodelphis
domestica]
Length = 348
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 84/164 (51%), Gaps = 38/164 (23%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE ++
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEGQVA----- 166
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
+ + L A P AC+ + G + + +++ P
Sbjct: 167 -ISAARLPAALPGPP-ACRPRAGN----------------LGVGGAGPRPLAAQLKWPFA 208
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
+ PAGV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 209 FP-------------PAGVVSTVVPDSAHKLFIGGLPNYLNDDQ 239
>gi|212539736|ref|XP_002150023.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
gi|210067322|gb|EEA21414.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
Length = 551
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 57/213 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+ N+P VT+ ++ FFN + L+GL G +P ++ QI+ D FA LEF+
Sbjct: 221 SRQAKRLFAYNLPPNVTDAALISFFN--LQLNGLNVIEGIDPCVSSQISKDHAFALLEFK 278
Query: 102 SIDETTQAMAFDGINFK-----------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+E T A+A DGI+ + + L++RRP DY D GVIS
Sbjct: 279 GPNEATVALALDGISMEEHEAAATTNGGARGLELRRPKDYIVPSSPEDQQPYQ--EGVIS 336
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+K+ + +P Y+ E+
Sbjct: 337 NQVPDSPNKLCVTNIPLYIPEEPVTMLLKSIGELRAFVLVKDSGTDESRGIAFCEYVDAT 396
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ LNGM+LGDK L + AS+G A+G
Sbjct: 397 ATAIAVESLNGMELGDKHLKITHASIGVTQAAG 429
>gi|212539738|ref|XP_002150024.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
gi|210067323|gb|EEA21415.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
Length = 556
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 57/213 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
+RQA+RL+ N+P VT+ ++ FFN + L+GL G +P ++ QI+ D FA LEF+
Sbjct: 221 SRQAKRLFAYNLPPNVTDAALISFFN--LQLNGLNVIEGIDPCVSSQISKDHAFALLEFK 278
Query: 102 SIDETTQAMAFDGINFK-----------GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS 150
+E T A+A DGI+ + + L++RRP DY D GVIS
Sbjct: 279 GPNEATVALALDGISMEEHEAAATTNGGARGLELRRPKDYIVPSSPEDQQPYQ--EGVIS 336
Query: 151 TVVPDSPHKIFIGGLPNYLNEDQ------------------------------------- 173
VPDSP+K+ + +P Y+ E+
Sbjct: 337 NQVPDSPNKLCVTNIPLYIPEEPVTMLLKSIGELRAFVLVKDSGTDESRGIAFCEYVDAT 396
Query: 174 ----AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ LNGM+LGDK L + AS+G A+G
Sbjct: 397 ATAIAVESLNGMELGDKHLKITHASIGVTQAAG 429
>gi|302813497|ref|XP_002988434.1| hypothetical protein SELMODRAFT_24180 [Selaginella moellendorffii]
gi|300143836|gb|EFJ10524.1| hypothetical protein SELMODRAFT_24180 [Selaginella moellendorffii]
Length = 339
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 27 VAAAAAAAVPVVGST-----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHL--SGLAQA 79
V A A +PVV IT+ ARR+YVG +P V E + FFN M +
Sbjct: 3 VLPAGIAQLPVVLRMPQMPQITKPARRVYVGGLPAVVDEARIATFFNHAMAVIEGNTYGQ 62
Query: 80 AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
G+ V++ I+ KN+AF+E RS++E + AMA DGI F+G ++IRRP +Y P +
Sbjct: 63 GGDAVVSVFIDHAKNYAFVEMRSVEEASNAMALDGIIFEGSQVRIRRPSNYNPEHAMLFG 122
Query: 140 AAVAVPA------GVISTVVPDSPHKIFIGGLP 166
++ P+ G++ D P +IFIGGLP
Sbjct: 123 SSQPSPSLRLDKVGLVYRAHADGPDRIFIGGLP 155
>gi|302796203|ref|XP_002979864.1| hypothetical protein SELMODRAFT_153568 [Selaginella moellendorffii]
gi|300152624|gb|EFJ19266.1| hypothetical protein SELMODRAFT_153568 [Selaginella moellendorffii]
Length = 325
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 8/133 (6%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHL--SGLAQAAGNPVLACQINLDKNFAFLE 99
IT+ ARR+YVG +P V E + FFN M + G+ V++ I+ KN+AF+E
Sbjct: 7 ITKPARRVYVGGLPAVVDEARIATFFNHAMAVIEGNTYGQGGDAVVSVFIDHAKNYAFVE 66
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA------GVISTVV 153
RS++E + AMA DGI F+G ++IRRP +Y P + ++ P+ G++
Sbjct: 67 MRSVEEASNAMALDGIIFEGSQVRIRRPSNYNPEHAMLFGSSQPSPSLRLDKVGLVYRAH 126
Query: 154 PDSPHKIFIGGLP 166
D P +IFIGGLP
Sbjct: 127 ADGPDRIFIGGLP 139
>gi|108706079|gb|ABF93874.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 964
Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 23 PETTVAAAAAAAVPVVGST----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA- 77
P TT+ + V S TR RRL++ N+P TED ++ N+ + S +
Sbjct: 446 PNTTIGTILTGSNLAVDSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASH 505
Query: 78 -QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
Q + P L+C IN DK AF+EF + ++ T A++FDG +F G SLKIRRP +Y V
Sbjct: 506 IQRSKQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEYVEMAHV 565
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED 172
+ +IS VV DSPHKIFI G+ ++ +
Sbjct: 566 APKKP-SEEIKLISDVVADSPHKIFIAGISGVISSE 600
>gi|108706080|gb|ABF93875.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 964
Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 23 PETTVAAAAAAAVPVVGST----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA- 77
P TT+ + V S TR RRL++ N+P TED ++ N+ + S +
Sbjct: 446 PNTTIGTILTGSNLAVDSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASH 505
Query: 78 -QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
Q + P L+C IN DK AF+EF + ++ T A++FDG +F G SLKIRRP +Y V
Sbjct: 506 IQRSKQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEYVEMAHV 565
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED 172
+ +IS VV DSPHKIFI G+ ++ +
Sbjct: 566 APKKP-SEEIKLISDVVADSPHKIFIAGISGVISSE 600
>gi|303273844|ref|XP_003056274.1| RNA binding protein [Micromonas pusilla CCMP1545]
gi|226462358|gb|EEH59650.1| RNA binding protein [Micromonas pusilla CCMP1545]
Length = 564
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 72/222 (32%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG----LAQAAG-NPVLACQINLDKNFAF 97
TR ARR+YVG +P E FF+ + G A AAG PVL +N +K FAF
Sbjct: 160 TRHARRIYVGGLPATANEASTATFFSNALAAIGGVVQTAAAAGVEPVLNVYMNHEKKFAF 219
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVA-VPA 146
+EFR+++ET+ A+A DG+ F G SL++RRP+DY T D AA+ VP
Sbjct: 220 VEFRTVEETSNAIALDGVVFDGVSLRVRRPNDYNAAIAATLGPSTPSTDLDLAAIGLVPG 279
Query: 147 GVISTVV---------------PDSPHKIFIGGLPNYLNE-------------------- 171
+ D+ +++F+GGLP +L E
Sbjct: 280 AGGAAGGAGAGGAAGGQNNLSPEDTANRLFVGGLPYFLTEPMVKELVEAFGPTKHFMLVM 339
Query: 172 ---------------------DQAIAGLNGMQLGDKKLIVQR 192
D A GL+GM++G+K L V+R
Sbjct: 340 DRETGNSKGYGFFVYQDHAVTDVACQGLHGMKMGEKTLTVRR 381
>gi|218192051|gb|EEC74478.1| hypothetical protein OsI_09930 [Oryza sativa Indica Group]
Length = 1128
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 70/207 (33%), Positives = 96/207 (46%), Gaps = 46/207 (22%)
Query: 23 PETTVAAAAAAAVPVVGST----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA- 77
P TT+ + V S TR RRL++ N+P TED ++ N+ + S +
Sbjct: 610 PNTTIGTILTGSNLAVDSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASH 669
Query: 78 -QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
Q + P L+C IN DK AF+EF + ++ T A++FDG +F G SLKIRRP +Y V
Sbjct: 670 IQRSKQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEYVEMAHV 729
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL----------------------NED-- 172
+ +IS VV DSPHKIFI G+ + NED
Sbjct: 730 APKKP-SEEIKLISDVVADSPHKIFIAGISGVISSEMLMEIVSSFGPLAAYRFLFNEDLG 788
Query: 173 ---------------QAIAGLNGMQLG 184
+A AGLNGM+LG
Sbjct: 789 GACAFLEYIDHSITSKACAGLNGMKLG 815
>gi|453082700|gb|EMF10747.1| hypothetical protein SEPMUDRAFT_48483 [Mycosphaerella populorum
SO2202]
Length = 432
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 60/217 (27%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRS 102
RQ++R+ V N+P T++ M++FFN + L+GL G +P ++ Q + DK +A +EF++
Sbjct: 103 RQSKRVMVHNLPPSATDESMVDFFN--LQLNGLNITRGVDPCISAQCSKDKTYALVEFKT 160
Query: 103 IDETTQAMAFDGINFKG-------------QSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
++ T AMA DGI + L+I+RP DY P V D +G++
Sbjct: 161 PEDATNAMALDGITMDHDAMDTSGASNGAPKGLQIKRPRDYI-VPNVIDETENE--SGLL 217
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
S VPD+ +KI I LP++L E+Q
Sbjct: 218 SNTVPDTQNKISITNLPSFLAEEQIQELLMSFGELKSFVLVRNQSSGESRGIAFCEYKDP 277
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASGQQA 205
A+ LNGM+L D + V+ AS+G + S + +
Sbjct: 278 SVTKVAVDSLNGMELADTAMRVKLASIGIQQVSSEMS 314
>gi|307108143|gb|EFN56384.1| expressed protein [Chlorella variabilis]
Length = 404
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEF 100
+TR RRLYVG +P + + F NQ + G+ Q AG P++ACQ+ ++NFAF+EF
Sbjct: 247 MTRPMRRLYVGGLPQPCYDFMLTTFLNQALMALGICQVAGKAPIIACQVTPERNFAFIEF 306
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
+ T A+ DGI F+G +LKI+RP DY P
Sbjct: 307 GDTSDATAALQLDGIPFRGNTLKIKRPKDYTP 338
>gi|242069429|ref|XP_002449991.1| hypothetical protein SORBIDRAFT_05g026783 [Sorghum bicolor]
gi|241935834|gb|EES08979.1| hypothetical protein SORBIDRAFT_05g026783 [Sorghum bicolor]
Length = 249
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 103/223 (46%), Gaps = 59/223 (26%)
Query: 42 ITRQA----RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPVLACQINLDKNFA 96
+TR+A RR+YVG++P E + FFNQ M + G A G+ V +N ++ FA
Sbjct: 18 MTREATLFTRRVYVGDLPPSANEQTIGVFFNQVMAVIGGNTAGPGDAVCGICMNHEQRFA 77
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVP 145
+EFR +E + AMA DGI F+G +K+RRP DY QP+ + + AAV +
Sbjct: 78 LVEFRMAEEASNAMALDGILFEGVPVKVRRPADYNLSQAAAMGPTQPSRKL-NLAAVGLT 136
Query: 146 AGVISTVVPDSPHKIFIGGLPNYLNE---------------------------------- 171
AG D P +IF+GGLP Y +E
Sbjct: 137 AGSAGGGSED-PDRIFVGGLPYYYSEAQVRDLLECIGPLRGFELVKDRETGNSKGYAFCV 195
Query: 172 -------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ A +Q +
Sbjct: 196 YMDTTATDIACADLNGIKMGDKILTVRRANQSASQPRPEQESI 238
>gi|323448636|gb|EGB04532.1| hypothetical protein AURANDRAFT_55169 [Aureococcus anophagefferens]
Length = 400
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 5 NEVLNTGAAGQIPANVIIPETTVAAAA--AAAVPVVGSTITRQARRLYVGNIPFGVTEDE 62
N+ L++ AA I N P + AA VPVV + T+ R L+VGN P G +E
Sbjct: 81 NQTLSSTAAASIGYNGSPPAADLLKAAMQKGLVPVVADSATKARRELFVGNTPQGTSERT 140
Query: 63 MMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122
+M+ N M L+ L A G+PV+AC+ L FAF+E RS++ET + + G+ F G SL
Sbjct: 141 LMDHLNAAMTLAMLTSAPGSPVIACR--LSAAFAFVELRSVEETDRCLNLTGLPFMGASL 198
Query: 123 KIRRPHDY 130
KI RP Y
Sbjct: 199 KIGRPSKY 206
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 89 INLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
+ + +AFLE RS +T+ + FDG+ F+G L+I RP
Sbjct: 297 VRVSGTYAFLETRSHSDTSALLNFDGVPFRGHRLRICRP 335
>gi|432111754|gb|ELK34799.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 116
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 64/103 (62%), Gaps = 16/103 (15%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPV--VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A +PV GS +TRQAR LY+GNIPFG+TE M++ FN
Sbjct: 19 AAGQIPATALLPTMTPDGLAVTPMPVPAAGSQMTRQARHLYMGNIPFGITEAAMVD-FNA 77
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAF 112
Q G IN +KNFAFLEFRS+DETTQA+A
Sbjct: 78 QFPGWG-------------INQEKNFAFLEFRSVDETTQAVAL 107
>gi|164657478|ref|XP_001729865.1| hypothetical protein MGL_2851 [Malassezia globosa CBS 7966]
gi|159103759|gb|EDP42651.1| hypothetical protein MGL_2851 [Malassezia globosa CBS 7966]
Length = 473
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 52/229 (22%)
Query: 7 VLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEF 66
++ G G +P I P A + +++ + RRL+V + T ++ F
Sbjct: 116 MMMYGIRGAMPG-TIPPSAMAELEATTSAAAFNASMYLETRRLHVSPVSSVKTSQQLRIF 174
Query: 67 FNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
N +M+ L + P A ++LD+ +A+LEFR+ DE + A+ DG+ F G L I
Sbjct: 175 INAKMNERLLCSSGSLEPCYAVDMHLDEGYAYLEFRNPDEASNALLLDGVAFLGHRLHIE 234
Query: 126 RPHDYQPTPGVTDNAAVAVPA-GVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP Y AVPA G I T VPD P+K++IG +P +LNE
Sbjct: 235 RPKGYV--------GQDAVPAPGAIETSVPDGPNKLYIGNVPVFLNEQQVMELLKAFGDV 286
Query: 172 ----------------------------DQAIAGLNGMQLGDKKLIVQR 192
D A GL+G+++G+++L+V+R
Sbjct: 287 RHFDLIRDPETQRSRGMAFCEFHEDAVTDLACEGLDGLEVGEQRLMVRR 335
>gi|378731414|gb|EHY57873.1| U2AF domain-containing protein (UHM) kinase 1 [Exophiala
dermatitidis NIH/UT8656]
Length = 574
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 67/221 (30%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL+V N+P V+E+ +++FFN Q++ + +A +P I D++FA +EF++
Sbjct: 239 SRQARRLFVHNLPASVSEEALVQFFNLQLNGLNVTKAV-DPCAQANIAEDRSFALVEFKN 297
Query: 103 IDETTQAMAFDGINFKG-------------------QSLKIRRPHDY-QPTPGVTDNAAV 142
+ T A+A DGI + L+IRRP DY P+ D A
Sbjct: 298 ASDATLALALDGITMPEHHSEMNGNGDANGNGTAAPKGLEIRRPKDYIVPS---ADEATY 354
Query: 143 AVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------- 173
A G IS+ VPD+ +K+ + LP +L +DQ
Sbjct: 355 A--EGEISSEVPDTANKLAVTNLPPFLTDDQVIELLKAFGEVKAFVLVREPDSQESRGIA 412
Query: 174 ------------AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
AI GLNGM L + V RAS+G + A+G
Sbjct: 413 FCEYADPASTAVAIEGLNGMDLAGNSIKVTRASIGYQQAAG 453
>gi|302846543|ref|XP_002954808.1| splicing factor U2AF, large subunit [Volvox carteri f. nagariensis]
gi|300259991|gb|EFJ44214.1| splicing factor U2AF, large subunit [Volvox carteri f. nagariensis]
Length = 532
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 36 PVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG--LAQAAGNPVLACQINLDK 93
P V TR ARR+YVG +P TE + FF+ + G A G P + I +
Sbjct: 185 PAVSQQATRHARRIYVGGLPPTATEQSISSFFSHALAAIGGNTAGPGGFPFHSTSITSPQ 244
Query: 94 NFAFLEFRS-IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV-----TDNAAVAVPAG 147
+ R I+ET+ AMA DGI F+G S+++RRP+DY P T N + + A
Sbjct: 245 SIRSSILREFIEETSNAMALDGIMFEGVSVRVRRPNDYNPAAAASLGPSTPNPNLNLAAI 304
Query: 148 VISTVV---PDSPHKIFIGGLPNYLNEDQ------------------------------- 173
+S D +IF+GGLP YL E+Q
Sbjct: 305 GLSNAAGGGADQADRIFVGGLPYYLTEEQCRELLGSFGPIKSFDLVKDRETGNSKGYGFV 364
Query: 174 ----------AIAGLNGMQLGDKKLIVQRAS 194
A AGLNG+++GD+ L V+RA+
Sbjct: 365 VYQDSAVTDIACAGLNGLRMGDRTLTVRRAT 395
>gi|70946422|ref|XP_742927.1| U2 snRNP auxiliary factor [Plasmodium chabaudi chabaudi]
gi|56522174|emb|CAH84932.1| U2 snRNP auxiliary factor, putative [Plasmodium chabaudi chabaudi]
Length = 561
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 22/157 (14%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 94
++ R+LY+GN+P ++E++EFFN + S L G+ PV+ C+I N D
Sbjct: 189 KKQRKLYIGNLPPNSKQEEIVEFFNNTLSSIIKGSSLEVKIGDVQLLPVVKCEIFNPDSR 248
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVP---AGVIST 151
F FLEFR++D T ++ D +++ L+I RPHDY P P V P G++ +
Sbjct: 249 FCFLEFRTMDITWLSLKLDSMSYNNYCLRINRPHDYMPPPEGDPALTVVFPDIDMGLLES 308
Query: 152 VVP----------DSPHKIFIGGLPNYLNEDQAIAGL 178
P D +K++I LP+ L +DQ + L
Sbjct: 309 FKPPKIAPVRSTGDDDNKLYIQNLPHDLKDDQIMDLL 345
>gi|357114131|ref|XP_003558854.1| PREDICTED: uncharacterized protein LOC100840355 [Brachypodium
distachyon]
Length = 840
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 43/202 (21%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL--AQAAG 81
ET ++ +++ V + TR RRL++ N+P +ED ++ N S + Q +
Sbjct: 314 ETILSGNSSSIDSVQLTQATRPLRRLHIENLPSSASEDMLIGCLNDFFLSSDVNHIQKSK 373
Query: 82 NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA 141
P L+C IN +K+ AF+EF + ++ T A++FDG +F G +LKIRRP +Y V
Sbjct: 374 QPCLSCTINKEKHQAFVEFLTPEDATAALSFDGRSFNGSALKIRRPKEYIEMANVVPKKT 433
Query: 142 VAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------------------ 171
V +++ V DSPHKIF+ G+ ++
Sbjct: 434 VEEIK--LASDVADSPHKIFVAGISGVISSEMLMEIVSSFGQLAAYRFQDHEALSGRCAF 491
Query: 172 ---------DQAIAGLNGMQLG 184
D+A AGLNGM+LG
Sbjct: 492 LEYIDHSITDKACAGLNGMKLG 513
>gi|68068227|ref|XP_676023.1| U2 snRNP auxiliary factor [Plasmodium berghei strain ANKA]
gi|56495523|emb|CAI00540.1| U2 snRNP auxiliary factor, putative [Plasmodium berghei]
Length = 630
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 22/157 (14%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 94
++ R+LY+GN+P ++E++EFFN + S L G+ PV+ C+I N D
Sbjct: 258 KKQRKLYIGNLPPNSKQEEIVEFFNNTISSIIKGSSLEVKIGDVQLLPVVKCEIFNADSR 317
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVP---AGVIST 151
F FLEFR++D T + D +++ L+I RPHDY P P V P G++ +
Sbjct: 318 FCFLEFRTMDITWLCLKLDSMSYNNYCLRINRPHDYMPPPEGDPALTVVFPDIDMGLLES 377
Query: 152 VVP----------DSPHKIFIGGLPNYLNEDQAIAGL 178
P D +K++I LP+ L +DQ + L
Sbjct: 378 FKPPKIAPVRSTGDDDNKLYIQNLPHDLKDDQIMDLL 414
>gi|307106441|gb|EFN54687.1| hypothetical protein CHLNCDRAFT_53018 [Chlorella variabilis]
Length = 247
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 26/172 (15%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC 87
AA A + R A+R+YVGN+P V+E E+ + N+ M G N +
Sbjct: 60 AAQLQARYQLFNPDAARPAKRVYVGNLPAAVSEAELRQAVNELM---GNGDLLFNGMHQV 116
Query: 88 QINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAG 147
Q DK +AF+EFRS++E + AMA DG+ F LK+ V
Sbjct: 117 Q---DKGYAFVEFRSVEEASNAMALDGVKFHDSYLKL-------------------VGLE 154
Query: 148 VISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGM-QLGDKKLIVQRASVGAK 198
V+ TVV DSPHK+FIGGLP +EDQ L QL L++ R + +K
Sbjct: 155 VVKTVVQDSPHKLFIGGLPCDWSEDQVKEMLMPFGQLKAFNLVMDRGTGNSK 206
>gi|82540696|ref|XP_724646.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479360|gb|EAA16211.1| splicing factor-like protein, putative [Plasmodium yoelii yoelii]
Length = 714
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 22/152 (14%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 94
++ R+LY+GN+P ++E++EFFN + S L G+ PV+ C+I N D
Sbjct: 342 KKQRKLYIGNLPPNSKQEEIVEFFNNTISSIIKGSSLEVKIGDVQLLPVVKCEIFNADSR 401
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVP---AGVIST 151
F FLEFR++D T + D +++ L+I RPHDY P P V P G++ +
Sbjct: 402 FCFLEFRTMDITWLCLKLDSMSYNNYCLRINRPHDYMPPPEGDPALTVVFPDIDMGLLES 461
Query: 152 VVP----------DSPHKIFIGGLPNYLNEDQ 173
P D +K++I LP+ L +DQ
Sbjct: 462 FKPPKIAPVRSTGDDDNKLYIQNLPHDLKDDQ 493
>gi|118489922|gb|ABK96758.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 787
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFR 101
T RRLY+ NIP +E +M+ N + SG+ G P ++C +K A +EF
Sbjct: 291 THPIRRLYMENIPASASEKAVMDCLNNFLISSGVHHIQGTQPCISCIRQKEKGQALVEFL 350
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-QPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
+ ++ + A++FDG +F G +K+RRP D+ + G + +A A+ A I +V DSPHKI
Sbjct: 351 TPEDASAALSFDGRSFSGSIIKVRRPKDFIEVATGELEKSAAAIDA--IGDIVKDSPHKI 408
Query: 161 FIGGLPNYLN 170
FIGG+ L+
Sbjct: 409 FIGGISKVLS 418
>gi|347968829|ref|XP_003436304.1| AGAP002908-PC [Anopheles gambiae str. PEST]
gi|333467822|gb|EGK96709.1| AGAP002908-PC [Anopheles gambiae str. PEST]
Length = 250
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Query: 168 YLNEDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ-QAPVQIQVPGLTQVGQAGPATE 225
Y DQAIAGLNGMQLGDKKLIVQRASVGAKN++ APVQIQVPGL+ VG +GP TE
Sbjct: 94 YTVTDQAIAGLNGMQLGDKKLIVQRASVGAKNSNAAVVAPVQIQVPGLSLVGSSGPPTE 152
>gi|428172624|gb|EKX41532.1| hypothetical protein GUITHDRAFT_112506 [Guillardia theta CCMP2712]
Length = 514
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 17/108 (15%)
Query: 42 ITRQARRLYVGNIPF---GVTEDEMMEFFNQQMHL--------------SGLAQAAGNPV 84
+T +ARR+YVGN+P ++E + EFF+Q MH +GL Q+ G V
Sbjct: 134 LTLKARRVYVGNLPQLDPPISEPALKEFFDQAMHQVQDQGAYFKAEFAQAGLTQSPGCCV 193
Query: 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
I+ +K+FAF+E R++ E T AM DGI F G L++ RPHDY P
Sbjct: 194 CDVWISSEKHFAFIEVRTVQEATSAMTLDGITFYGTPLRVNRPHDYVP 241
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 43 TRQARRLYVGNIPFG-VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
T++ARR++VGN+ G +T + +F +Q M L G+P + ++ D NF F+E R
Sbjct: 274 TKKARRIHVGNLLVGSMTSASLKQFISQSMQQLSLVVKPGDPCIDSFLSGDGNFGFVEMR 333
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
++ E AMA GI G+ +++ RP DY P
Sbjct: 334 TVAEANNAMALSGIECNGRPIRVGRPADYVP 364
>gi|340503018|gb|EGR29650.1| splicing factor u2af large subunit, putative [Ichthyophthirius
multifiliis]
Length = 438
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
A R+Y+GNIP + +++ F + + SG GNP+++ + + K F FL+ RSI+
Sbjct: 114 HALRIYIGNIPDPIDTEDVCHFVYKSLLESGGLLEPGNPIISKKNDPIKKFIFLQLRSIE 173
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAV----PAGVISTVVPDSPHKI 160
ET+ M DGI +KG+SL+ RRP DY P V + + ++ T V ++ +K+
Sbjct: 174 ETSACMQLDGILYKGKSLRFRRPKDYTTMPQVEGTRKIPILDRNKLRIVQTQVENTYNKL 233
Query: 161 FIGGLPNYLNEDQAIAGL 178
+ +P ++E+ + L
Sbjct: 234 QVMNIPETISEEHVMQIL 251
>gi|345569109|gb|EGX51978.1| hypothetical protein AOL_s00043g712 [Arthrobotrys oligospora ATCC
24927]
Length = 569
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 46/206 (22%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL N+P TE+ + FF+ + + P++ +N A LEFRS
Sbjct: 248 SRQAKRLLCQNLPPMCTEETIYSFFSSFLKSLNAVDSENEPLITVYLNPTGTMAMLEFRS 307
Query: 103 IDETTQAMAFDGINFKGQSLKIR--RPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
T +AFDG+ F +KIR RP DY P ++++ G IS VPDS +KI
Sbjct: 308 TAYATLCLAFDGMEFDDTEVKIRLSRPKDYI-IPQYSESSESH--NGDISPNVPDSINKI 364
Query: 161 FIGGLPNYLNEDQ-----------------------------------------AIAGLN 179
+ +P +L + Q AI GLN
Sbjct: 365 CVSNIPTHLADQQVMELLQTFGPLKSFFLVKDKEMDESKGVAFCEYLDPNIAEIAIEGLN 424
Query: 180 GMQLGDKKLIVQRASVGAKNASGQQA 205
G+ + ++ L V+RAS+G K ++G +A
Sbjct: 425 GLDINEQLLNVKRASIGVKQSAGAEA 450
>gi|303279322|ref|XP_003058954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460114|gb|EEH57409.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 39/170 (22%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA--QAAGNPVLACQINLDKNFAFLEF 100
TRQARRLY+G IP G ++ F N M SG A AAG PV+ +I +K F F EF
Sbjct: 156 TRQARRLYIGGIPPGAINSDVQRFLNDLMLNSGAAINPAAGPPVVDVKIQHEKGFGFAEF 215
Query: 101 RSIDETTQAMAFDGINF--KGQSLKIRRPHDYQPT------------------------- 133
+ D+ A+ FDG+ + G+ +++ RP DY P+
Sbjct: 216 TNCDDAQSALMFDGVVYGDTGRKIRVNRPRDYDPSKNPVVIRDGLQIEGPKGIGLLGEKQ 275
Query: 134 ----PGVTDNAAVAVPAGVISTV------VPDSPHKIFIGGLPNYLNEDQ 173
P ++ A+ P ++S PD P+K+++GG E Q
Sbjct: 276 ANAPPPWPEDLAIPAPPPLVSEWPKLPKRTPDGPNKLYVGGFDPLHTEGQ 325
>gi|440290938|gb|ELP84237.1| splicing factor u2af large subunit, putative [Entamoeba invadens
IP1]
Length = 623
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA--AGNPVLACQINLDKNFAFLEFRSI 103
+RR+YVGNI TE +++E FN M + +++ ++N +K++AF+EFR+
Sbjct: 123 SRRVYVGNINTTTTEQDIVEAFNDAMRRGDYVDKNDKSDIIVSTEVNYEKSYAFIEFRTF 182
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK--IF 161
D+ +A++ DG+ KG S+K+RRP D+ P + + + G P ++
Sbjct: 183 DQAVKALSLDGLTIKGASVKVRRPKDFNPVLPFISSLSQLMEVGTT------KPRDGVMY 236
Query: 162 IGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGA 197
+G +P ++++Q L + K ++V+ S+GA
Sbjct: 237 MGNIPLQMSDEQIQKKLENLNPLKKYVVVRDPSLGA 272
>gi|145547916|ref|XP_001459639.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427465|emb|CAK92242.1| unnamed protein product [Paramecium tetraurelia]
Length = 402
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC 87
+ + A VP A RLY+GN+P V +D + + QQM G G+PV+
Sbjct: 69 SESGAYKVPQHLHKNYPHAVRLYLGNLPDNVDKDHLHNYIRQQMESHGAVLDPGDPVIQV 128
Query: 88 QINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAG 147
Q+ + + F++FRSI+ET A+ D IN++G+ LK +R DY+ +P + V
Sbjct: 129 QLQPGQKYCFVQFRSIEETEAALQIDTINYQGKPLKFKRVKDYEISPRIEGEREVP---- 184
Query: 148 VISTVVPDSP-HKIFIGGL 165
+ P P K+F+ GL
Sbjct: 185 ---KIQPKEPAQKLFVCGL 200
>gi|167395950|ref|XP_001741817.1| hexokinase [Entamoeba dispar SAW760]
gi|165893477|gb|EDR21726.1| hexokinase, putative [Entamoeba dispar SAW760]
Length = 974
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 10/158 (6%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP---VLACQINLDKNFAFLEF 100
R A+R+YVGNI +E ++++ FN+ M G +P + ++N ++++AFLEF
Sbjct: 357 RAAKRIYVGNINSSTSEKDIVDAFNEAMR-RGDYVDKNDPRDIITHIEVNYERSYAFLEF 415
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT-PGVTDNAAVAVPAGVISTVVPDSPHK 159
R+++E +A++ DG+ KG S+K+RRP DY P P ++ + + P T P
Sbjct: 416 RTLEEAVKALSLDGLTIKGASVKVRRPKDYNPVLPFISGLSQLMEPG----TTNPRES-I 470
Query: 160 IFIGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGA 197
+++G +P + ++Q L + K +++ +GA
Sbjct: 471 LYMGNIPLQMTDEQIRKKLENLNPLKKFFVIRDPDLGA 508
>gi|393220899|gb|EJD06384.1| hypothetical protein FOMMEDRAFT_45167, partial [Fomitiporia
mediterranea MF3/22]
Length = 244
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 13/131 (9%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQ-MHLSGLAQA--AGNPVLACQINLDKNFAFLEFRSID 104
RLY+G+I + E + F N M + G Q + +PVLA Q N ++ +A ++F S +
Sbjct: 3 RLYIGSITREINETNLARFLNTLVMGIDGDRQTRTSDDPVLAVQCNYEEGYAIVDFCSAE 62
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDY----QPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
+ T AMAFDGI F L+IRR DY P P + V VP GV+ST V D +K+
Sbjct: 63 DATAAMAFDGITFLNGPLRIRRLMDYGGVDSPAP-----SNVHVP-GVVSTNVADHANKV 116
Query: 161 FIGGLPNYLNE 171
I LP YLNE
Sbjct: 117 PIRDLPMYLNE 127
>gi|255082091|ref|XP_002508264.1| RNA binding protein [Micromonas sp. RCC299]
gi|226523540|gb|ACO69522.1| RNA binding protein [Micromonas sp. RCC299]
Length = 493
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA--QAAGNPVLACQINLDKNFAFLEF 100
TRQ+RRLYVG++P V ++ + FFN M SG A + G V+ I +K FAF+EF
Sbjct: 114 TRQSRRLYVGSLPKPVNDEALHAFFNNAMVNSGAAIDPSGGPSVVNTTITHEKGFAFIEF 173
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
R +++ A+ FDGI F G L I+RP DY
Sbjct: 174 RRLEDAESALMFDGIVFNGSKLIIKRPKDY 203
>gi|156099808|ref|XP_001615700.1| U2 snRNP auxiliary factor [Plasmodium vivax Sal-1]
gi|148804574|gb|EDL45973.1| U2 snRNP auxiliary factor, putative [Plasmodium vivax]
Length = 914
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 3 VNNEVLNTGAAGQIP------ANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPF 56
+ N +L++ A G + AN + P V+ V G ++ R+LY+GNIP
Sbjct: 497 LKNNLLDSSANGLLQQQNLALANGLGPNNKVSPLGRNPYEVEGD---KKQRKLYIGNIPP 553
Query: 57 GVTEDEMMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKNFAFLEFRSIDETT 107
++E+++FFN + S L G+ P+L C+I N++ F FLEFRS++ T
Sbjct: 554 NSKQEELIDFFNNTLASIIKDSSLEIKIGDIVLLPILKCEIFNVESRFCFLEFRSLEITW 613
Query: 108 QAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVA---VPAGVISTVVP---------- 154
+ D I+F L+I RPHD+ P PG V + V V P
Sbjct: 614 LCLRLDAISFNNYCLRIARPHDFVPPPGGDPALTVVFTDINHEVFEMVKPVKIAPVRSTG 673
Query: 155 DSPHKIFIGGLPNYLNEDQ 173
D +K++I LP+ L +DQ
Sbjct: 674 DDDNKLYIQNLPHDLRDDQ 692
>gi|359477752|ref|XP_002281833.2| PREDICTED: uncharacterized protein LOC100266510 [Vitis vinifera]
Length = 895
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 19/159 (11%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFR 101
TR RRLYV N+P +E +ME N + SG+ G P ++C I+ +K A +EF
Sbjct: 436 TRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCISCIIHKEKGQALVEFL 495
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
+ ++ + A++FDGI+F G LKIRRP D+ + + AA P V +
Sbjct: 496 TPEDASAALSFDGISFSGSILKIRRPKDF-----LMEIAAAFGPLKAYRFQVNEDL---- 546
Query: 162 IGGLP----NYLNED---QAIAGLNGMQLGDKKLIVQRA 193
G P Y+++ +A AGLNGM+LG + L V +A
Sbjct: 547 --GEPCAFLEYVDQSVTLKACAGLNGMKLGGQVLTVVQA 583
>gi|67475980|ref|XP_653619.1| U2 snRNP auxiliary factor large subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56470591|gb|EAL48233.1| U2 snRNP auxiliary factor large subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 712
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA--AGNPVLACQINLDKNFAFLEFR 101
R A+R+YVGNI +E ++++ FN+ M + + ++N ++++AFLEFR
Sbjct: 139 RAAKRIYVGNINSSTSEKDIVDAFNEAMRRGDYVDKNDTRDIITHIEVNYERSYAFLEFR 198
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT-PGVTDNAAVAVPAGVISTVVPDSPHKI 160
+++E +A++ DG+ KG S+K+RRP DY P P ++ + + P T P +
Sbjct: 199 TLEEAVKALSLDGLTIKGASVKVRRPKDYNPVLPFISGLSQLMEPG----TTNPRES-IL 253
Query: 161 FIGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGA 197
++G +P + ++Q L + +++ +GA
Sbjct: 254 YMGNIPLQMTDEQIRKKLENLNPLKNFFVIRDPDLGA 290
>gi|449707077|gb|EMD46798.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 712
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA--AGNPVLACQINLDKNFAFLEFR 101
R A+R+YVGNI +E ++++ FN+ M + + ++N ++++AFLEFR
Sbjct: 139 RAAKRIYVGNINSSTSEKDIVDAFNEAMRRGDYVDKNDTRDIITHIEVNYERSYAFLEFR 198
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT-PGVTDNAAVAVPAGVISTVVPDSPHKI 160
+++E +A++ DG+ KG S+K+RRP DY P P ++ + + P T P +
Sbjct: 199 TLEEAVKALSLDGLTIKGASVKVRRPKDYNPVLPFISGLSQLMEPG----TTNPRES-IL 253
Query: 161 FIGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGA 197
++G +P + ++Q L + +++ +GA
Sbjct: 254 YMGNIPLQMTDEQIRKKLENLNPLKNFFVIRDPDLGA 290
>gi|407043289|gb|EKE41863.1| U2 snRNP auxiliary factor large subunit, putative [Entamoeba
nuttalli P19]
Length = 628
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 85/159 (53%), Gaps = 12/159 (7%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA--AGNPVLACQINLDKNFAFLEFR 101
R A+R+YVGNI +E ++++ FN+ M + + ++N ++++AFLEFR
Sbjct: 139 RAAKRIYVGNINSSTSEKDIVDAFNEAMRRGDYVDKNDTRDIITHIEVNYERSYAFLEFR 198
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT-PGVTDNAAVAVPAGVISTVVPDSPHK- 159
+++E +A++ DG+ KG S+K+RRP DY P P ++ + + P +P +
Sbjct: 199 TLEEAVKALSLDGLTIKGASVKVRRPKDYNPVLPFISGLSQLMEPGTT-------NPRES 251
Query: 160 -IFIGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGA 197
+++G +P + ++Q L + +++ +GA
Sbjct: 252 ILYMGNIPLQMTDEQIRKKLENLNPLKNFFVIRDPDLGA 290
>gi|297823139|ref|XP_002879452.1| hypothetical protein ARALYDRAFT_321074 [Arabidopsis lyrata subsp.
lyrata]
gi|297325291|gb|EFH55711.1| hypothetical protein ARALYDRAFT_321074 [Arabidopsis lyrata subsp.
lyrata]
Length = 497
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 27/156 (17%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFR 101
TR RRLY N+P +E ++E FN M SG G+ P ++C IN +K+ A +EF
Sbjct: 215 TRPMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEFL 274
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
+ + + A++ DG +F G +LKIRRP DY V ++ V P K +
Sbjct: 275 TPQDASAALSLDGCSFAGSNLKIRRPKDY-------------VGTTLMEIVSVFGPLKAY 321
Query: 162 IGGLPNYLNED-------------QAIAGLNGMQLG 184
N LN+ +A AGLNGM+LG
Sbjct: 322 RFVSNNDLNQQCAYLEYTDGSVTLKACAGLNGMKLG 357
>gi|221059061|ref|XP_002260176.1| U2 snRNP auxiliary factor [Plasmodium knowlesi strain H]
gi|193810249|emb|CAQ41443.1| U2 snRNP auxiliary factor, putative [Plasmodium knowlesi strain H]
Length = 865
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 18/127 (14%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQM----HLSGLAQAAGN----PVLACQI-NLDKN 94
++ R+LY+GNIP ++E+++FFN + S L G+ P+L C+I N++
Sbjct: 492 KKQRKLYIGNIPPNSKQEELIDFFNNTLGSIIKDSSLEIKIGDIVLMPILKCEIFNVESR 551
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVP 154
F FLEFRS++ T + D I F +L+I RPHD+ P PG PA ++ V
Sbjct: 552 FCFLEFRSLEITWLCLRLDAITFNNYALRIARPHDFVPPPG-------GDPA--LTVVFT 602
Query: 155 DSPHKIF 161
D H++F
Sbjct: 603 DIQHEVF 609
>gi|297801306|ref|XP_002868537.1| hypothetical protein ARALYDRAFT_355725 [Arabidopsis lyrata subsp.
lyrata]
gi|297314373|gb|EFH44796.1| hypothetical protein ARALYDRAFT_355725 [Arabidopsis lyrata subsp.
lyrata]
Length = 1370
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 38/168 (22%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFR 101
TR+ RRLY N+ +E ++E FN M SG G+ P ++C IN +K+ A +EF
Sbjct: 898 TRRMRRLYAENVSDSASEKSLIECFNSYMLSSGSNHIKGSEPCISCIINKEKSQALVEFL 957
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGV-----------TDNAAVAV------ 144
+ + + A++ DG +F G +LKIRRP Y T GV D A V
Sbjct: 958 TPHDASAALSLDGCSFAGLNLKIRRPKGYVETTGVYVGYVIIHIQEGDEAVCYVMVTIHE 1017
Query: 145 -------------------PA-GVISTVVPDSPHKIFIGGLPNYLNED 172
PA IS V DS +KIFIGG P ++ +
Sbjct: 1018 AGFQTVAIFMQSGELAKKEPATNAISDNVKDSSNKIFIGGFPKSISSE 1065
>gi|357155772|ref|XP_003577233.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
distachyon]
Length = 446
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 44/163 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 200 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 259
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
S++E + AMA DGI F+G +K D T
Sbjct: 260 SVEEASNAMALDGILFEGAPVK-----DLNVT---------------------------- 286
Query: 162 IGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
D A A LNG+++GDK L V+RA+ G+ +Q
Sbjct: 287 ----------DIACAALNGIKMGDKTLTVRRANQGSAQPRPEQ 319
>gi|30685698|ref|NP_850209.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|330253740|gb|AEC08834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 979
Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFR 101
TR+ RRLY N+P +E ++E FN M SG G+ P ++C IN +K+ A +EF
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEFL 933
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
+ + + A++ DG +F G +LKIRRP DY T
Sbjct: 934 TPQDASAALSLDGCSFAGSNLKIRRPKDYVRT 965
>gi|147852616|emb|CAN81690.1| hypothetical protein VITISV_009755 [Vitis vinifera]
Length = 544
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFR 101
TR RRLYV N+P +E +ME N + SG+ G P ++C I+ +K A +EF
Sbjct: 436 TRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCISCIIHKEKGQALVEFL 495
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ ++ + A++FDGI+F G LKIRRP D+
Sbjct: 496 TPEDASAALSFDGISFSGSILKIRRPKDF 524
>gi|449498643|ref|XP_004160593.1| PREDICTED: uncharacterized LOC101213128 [Cucumis sativus]
Length = 918
Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 21 IIPETTVAAAAAAAVPVVGST-ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA 79
++ +A ++ +V T TR RRLY+ N+P +E +++ N + SG+
Sbjct: 444 VVSSNNIAMKTKVSLDLVQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLMSSGVNHI 503
Query: 80 AG-NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
G P ++C I+ D+ A +EF + ++ + A+ FDG +F G +LKIRRP DY T
Sbjct: 504 EGTQPCISCIIHKDRGQALVEFLTPEDASAALLFDGSDFSGSTLKIRRPKDYIETLRDVV 563
Query: 139 NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE---DQAIAGLNGMQLGDKKLIV 190
A + A + F+ Y++E +A AGLNGM++G + L V
Sbjct: 564 TAFGRLKAYHFEINDDLNGPCAFL----EYVDESVVSKACAGLNGMKIGGQVLKV 614
>gi|449458894|ref|XP_004147181.1| PREDICTED: uncharacterized protein LOC101213128 [Cucumis sativus]
Length = 910
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 21 IIPETTVAAAAAAAVPVVGST-ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA 79
++ +A ++ +V T TR RRLY+ N+P +E +++ N + SG+
Sbjct: 436 VVSSNNIAMKTKVSLDLVQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLMSSGVNHI 495
Query: 80 AG-NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
G P ++C I+ D+ A +EF + ++ + A+ FDG +F G +LKIRRP DY T
Sbjct: 496 EGTQPCISCIIHKDRGQALVEFLTPEDASAALLFDGSDFSGSTLKIRRPKDYIETLRDVV 555
Query: 139 NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE---DQAIAGLNGMQLGDKKLIV 190
A + A + F+ Y++E +A AGLNGM++G + L V
Sbjct: 556 TAFGRLKAYHFEINDDLNGPCAFL----EYVDESVVSKACAGLNGMKIGGQVLKV 606
>gi|124810295|ref|XP_001348830.1| U2 snRNP auxiliary factor, putative [Plasmodium falciparum 3D7]
gi|23497731|gb|AAN37269.1|AE014827_12 U2 snRNP auxiliary factor, putative [Plasmodium falciparum 3D7]
Length = 833
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 28/168 (16%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 94
++ R+LY+GNIP ++++++FFN + S L G+ PV+ C+I N D
Sbjct: 453 KKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFNSDSR 512
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP---------------GVTDN 139
F FLEFR++ T + D I + L+I RPHDY P P V +
Sbjct: 513 FCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMDVFEK 572
Query: 140 AAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKK 187
+ P V ++ D ++++I LP+ L ++Q L Q GD K
Sbjct: 573 LRPSKPVNVKTS--SDEENRLYIQNLPHDLKDEQIKDLLE--QFGDLK 616
>gi|389585066|dbj|GAB67797.1| splicing factor [Plasmodium cynomolgi strain B]
Length = 409
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE++ E +M NPVL DK N+ F+
Sbjct: 123 TRKLRRLYFGNLPLHLGLTENDFQESVWDEMKKRKFCNDEKINPVLYVWFAKDKGNYGFV 182
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EF +++ET +A+ DG+ KG +LK+ RP+DY
Sbjct: 183 EFSTVEETERALTMDGMLCKGVALKVSRPNDY 214
>gi|357438349|ref|XP_003589450.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355478498|gb|AES59701.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 611
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 100/245 (40%), Gaps = 78/245 (31%)
Query: 10 TGAAGQIPANV--IIPETTVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGVTEDE 62
TGA+ IP + P T +A+PV+ TR ARR+YVG + E
Sbjct: 246 TGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQATRHARRVYVGGLSPTANEQS 305
Query: 63 MMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121
+ FF+Q M + G G+ V+ RS++E + AMA DGI F+G
Sbjct: 306 VATFFSQVMATIGGNTAGPGDAVM---------------RSVEEASNAMALDGIIFEGAP 350
Query: 122 LKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN 170
+K+RRP DY QP P + + V + G + D P +IF+GG+P Y
Sbjct: 351 VKVRRPTDYNPSLAAALGPSQPNPNL-NLGLVGLSPGSAGGL--DGPDRIFVGGVPYYFT 407
Query: 171 EDQ-----------------------------------------AIAGLNGMQLGDKKLI 189
E Q A A LNG+++GDK L
Sbjct: 408 ETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLT 467
Query: 190 VQRAS 194
V+RA+
Sbjct: 468 VRRAN 472
>gi|356536627|ref|XP_003536838.1| PREDICTED: uncharacterized protein LOC100810537 [Glycine max]
Length = 735
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 18/159 (11%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQM---HLSGLAQAAGNPVLACQINLDKNFAFLE 99
TR RRLY+ N+P +E +M+ FN + ++ + QA P + C ++ DK A +E
Sbjct: 280 TRPIRRLYLENLPASASEKAVMDCFNNLLLSARVNHIQQA--QPCICCILHKDKGQALVE 337
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAV--AVPAGVISTVVPDSP 157
F + D+ + A++FDG G +KIRRP DY + + A V ++ A T V + P
Sbjct: 338 FLTADDASAALSFDGSMLFGSIVKIRRPKDYIE---LMEIAGVFGSLKAYHFETKVNNGP 394
Query: 158 HKIFIGGLPNYLNED---QAIAGLNGMQLGDKKLIVQRA 193
Y++ +A AGLNGM+LG + L V +A
Sbjct: 395 CAFL-----EYVDHSVTIKACAGLNGMKLGGEVLTVLQA 428
>gi|325179530|emb|CCA13927.1| splicing factor U2af large subunit putative [Albugo laibachii Nc14]
Length = 833
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP 83
+ +A A+ V + + + AR LYVGN+P +T ++ EF + GL+ GNP
Sbjct: 449 QDIIAKMQASNVTMAAAVAMKPARELYVGNLPATITGPQLQEFLGTIIQQVGLSTQPGNP 508
Query: 84 VLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY----QPTPGVTDN 139
+L+ I+ D +FAF E RS++E A+ + + GQ LK RP + QP P V+
Sbjct: 509 ILSVWISTDGHFAFCEMRSVEECNLALLLNQLPLLGQPLKFGRPRSFMGPPQPMPIVSAR 568
Query: 140 AAVAV 144
A+
Sbjct: 569 TQTAL 573
>gi|67604403|ref|XP_666610.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657644|gb|EAL36385.1| hypothetical protein Chro.10345 [Cryptosporidium hominis]
Length = 287
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIP--FGVTEDEMMEFFNQQMHLSGLA-QAAGNPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE + Q+M L GL NP+L K N+ F+
Sbjct: 9 TRRFRRLYFGNLPINLGLTESSFQQIVWQEMALRGLCLNPNENPILCVWFAQKKGNYGFI 68
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EFR+++ET +A+ DG G +K+ RP+DY
Sbjct: 69 EFRTVEETEKALQLDGFACMGSKIKVSRPNDY 100
>gi|326492263|dbj|BAK01915.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 622
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A Q PA + +T ++ +++ V + TR RRL++ N+ +ED ++ N +
Sbjct: 471 APKQNPATAL--DTILSGNSSSVDSVQLTQATRPLRRLHIENLASSASEDALIGCLNDFL 528
Query: 72 HLSG---LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPH 128
+G Q + P L+C IN +K AF+EF + ++ T A++FDG +F G +LKIRRP
Sbjct: 529 LSTGDINRIQRSKQPCLSCTINKEKRQAFVEFLTPEDATAALSFDGRSFNGSTLKIRRPK 588
Query: 129 DY 130
+Y
Sbjct: 589 EY 590
>gi|66362320|ref|XP_628124.1| splicing factor U2AF like SnRNP auxilary factor large subunit, RRM
domain [Cryptosporidium parvum Iowa II]
gi|46227619|gb|EAK88554.1| splicing factor U2AF like SnRNP auxilary factor large subunit, RRM
domain [Cryptosporidium parvum Iowa II]
Length = 330
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIP--FGVTEDEMMEFFNQQMHLSGLA-QAAGNPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE + Q+M L GL NP+L K N+ F+
Sbjct: 52 TRRFRRLYFGNLPINLGLTESSFQQIVWQEMALRGLCLNPNENPILCVWFAQKKGNYGFV 111
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EFR+++ET +A+ DG G +K+ RP+DY
Sbjct: 112 EFRTVEETEKALQLDGFACMGSKIKVSRPNDY 143
>gi|221058861|ref|XP_002260076.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193810149|emb|CAQ41343.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 513
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G++E+E E +M NPVL DK N+ F+
Sbjct: 244 TRKLRRLYFGNLPLHLGLSENEFQETIWDEMKKRKFCNDDNINPVLYVWFAKDKGNYGFV 303
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
EF +++ET +A+ DG+ +G +LK+ RP+DY T + N
Sbjct: 304 EFSTVEETERALTMDGMLCRGVALKVSRPNDYSSTNTMKHN 344
>gi|156099208|ref|XP_001615606.1| splicing factor [Plasmodium vivax Sal-1]
gi|148804480|gb|EDL45879.1| splicing factor, putative [Plasmodium vivax]
Length = 380
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE++ E +M NPVL DK N+ F+
Sbjct: 79 TRKLRRLYFGNLPLHLGLTENDFQESVWDEMKKRKFCNDEKINPVLYVWFAKDKGNYGFV 138
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EF +++ET +A+ DG+ KG +LK+ RP+DY
Sbjct: 139 EFSTVEETERALTMDGMLCKGVALKVSRPNDY 170
>gi|83273743|ref|XP_729532.1| 19096-22891 [Plasmodium yoelii yoelii 17XNL]
gi|23487609|gb|EAA21097.1| 19096-22891 [Plasmodium yoelii yoelii]
Length = 546
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE+ E +M NPVL DK N+ F+
Sbjct: 256 TRKLRRLYFGNLPLHLGLTENAFQEIVWDEMKKRKFCNNENINPVLYVWFAKDKGNYGFV 315
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAV 142
EF +++ET +A+ DG+ KG ++KI RP+DY T V +N +
Sbjct: 316 EFSTVEETEKALTMDGMLCKGIAIKISRPNDY-STSSVKNNQNI 358
>gi|255575831|ref|XP_002528813.1| splicing factor u2af large subunit, putative [Ricinus communis]
gi|223531725|gb|EEF33547.1| splicing factor u2af large subunit, putative [Ricinus communis]
Length = 844
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 33/185 (17%)
Query: 26 TVAAAAAAAVPV-----VGSTI-----------------TRQARRLYVGNIPFGVTEDEM 63
TV+A A++PV V S I TR RRLYV NIP +E +
Sbjct: 360 TVSAVPVASIPVKPLSGVSSNILLTNKNDTIDSVQLTQATRPMRRLYVENIPAEASEKAV 419
Query: 64 MEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122
+E N + SG+ G P ++C I+ +K A +EF + ++ + A++FDG F G ++
Sbjct: 420 LERLNNLLISSGVNHIQGTQPCISCIIHKEKGQALVEFLTPEDASAALSFDGSYFSGSTI 479
Query: 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---QAIAGLN 179
KIRRP D+ T A I V + P Y ++ +A AGLN
Sbjct: 480 KIRRPKDFIMEIASTFGPLKAYHFENIDDV--NGP-----CAFVEYADQSVTFRACAGLN 532
Query: 180 GMQLG 184
GM+LG
Sbjct: 533 GMKLG 537
>gi|221483471|gb|EEE21790.1| U2 snRNP auxiliary factor, putative [Toxoplasma gondii GT1]
gi|221507941|gb|EEE33528.1| U2 snRNP splicing factor, putative [Toxoplasma gondii VEG]
Length = 553
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 31/175 (17%)
Query: 30 AAAAAVPVVGST------ITRQARRLYVGNIPFGVTEDEMMEFFN--------QQMHLSG 75
+A AA +GST R+ +RLYVGN+P G T+ +++ FFN Q +
Sbjct: 165 SAVAAAQSLGSTRGHDTEFDRKQKRLYVGNLPPGSTQPDVVGFFNGALLAVNAQTGFVKE 224
Query: 76 LAQAAGN---PVLACQI-NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
AG PV C++ N F F+E R+ + DGI + G SL++ RPHDY
Sbjct: 225 DEATAGEQLLPVERCEVFNESSRFCFIELRNEQYAILCVKLDGITYNGYSLRVGRPHDYV 284
Query: 132 PTPG-----------VTDNAAVAVPAGVISTVVPDS--PHKIFIGGLPNYLNEDQ 173
P PG + D V P++ +KI+I LP + E+Q
Sbjct: 285 PPPGGDPAHQAYIPLLDDAKKVKREEKREKPSRPETGPDNKIYIQNLPPEMGEEQ 339
>gi|68072873|ref|XP_678350.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498790|emb|CAH99847.1| conserved hypothetical protein [Plasmodium berghei]
Length = 508
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE+ E +M NPVL DK N+ F+
Sbjct: 225 TRKLRRLYFGNLPLHLGLTENAFQEIVWDEMKKRKFCNNENINPVLYVWFAKDKGNYGFV 284
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAV 144
EF +++ET +A+ DG+ KG ++KI RP+DY T V +N + +
Sbjct: 285 EFSTVEETEKALTMDGMLCKGVAIKISRPNDY-STSSVKNNQNILM 329
>gi|237839189|ref|XP_002368892.1| U2 snRNP auxiliary factor or splicing factor, putative [Toxoplasma
gondii ME49]
gi|211966556|gb|EEB01752.1| U2 snRNP auxiliary factor or splicing factor, putative [Toxoplasma
gondii ME49]
Length = 553
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 31/175 (17%)
Query: 30 AAAAAVPVVGST------ITRQARRLYVGNIPFGVTEDEMMEFFN--------QQMHLSG 75
+A AA +GST R+ +RLYVGN+P G T+ +++ FFN Q +
Sbjct: 165 SAVAAAQSLGSTRGHDTEFDRKQKRLYVGNLPPGSTQPDVVGFFNGALLAVNAQTGFVKE 224
Query: 76 LAQAAGN---PVLACQI-NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
AG PV C++ N F F+E R+ + DGI + G SL++ RPHDY
Sbjct: 225 DEATAGEQLLPVERCEVFNESSRFCFIELRNEQYAILCVKLDGITYNGYSLRVGRPHDYV 284
Query: 132 PTPGVTDNAAVAVPAGVISTVV--------PDSP-----HKIFIGGLPNYLNEDQ 173
P PG +P + V P P +KI+I LP + E+Q
Sbjct: 285 PPPGGDPAHQAYIPLLDDAKKVKREEKREKPSRPETGPNNKIYIQNLPPEMGEEQ 339
>gi|432107103|gb|ELK32526.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 243
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 58/121 (47%), Gaps = 46/121 (38%)
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ-------------------------------------- 173
VVPDS HK+F+GGLPNY+ +DQ
Sbjct: 121 VVPDSAHKLFMGGLPNYMKDDQVKELLTWFGPLKAFNLVKDSTTGLSKGCAFYEYVDISI 180
Query: 174 ---AIAGLNGMQLGDKKLIVQRASVGAKNASG---QQAPVQIQVPGLTQVGQ--AGPATE 225
A+AG NGMQLG KKL+VQRA VGAKNA+ Q PV +QV GL+ Q A P
Sbjct: 181 RDQAMAGPNGMQLGVKKLLVQRAGVGAKNATLSTIHQTPVTLQVLGLSSQVQMAATPRRS 240
Query: 226 C 226
C
Sbjct: 241 C 241
>gi|399216451|emb|CCF73139.1| unnamed protein product [Babesia microti strain RI]
Length = 374
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TED +M G +PV+ + DK N+ F+
Sbjct: 123 TRKLRRLYFGNLPLHLGLTEDGFKTIVTNEMKARGFCIDPNVDPVVYVWFSNDKGNYGFV 182
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EF +I+ET +A+ DG+N G L+I RP+DY
Sbjct: 183 EFNTIEETEKALTMDGMNCMGVQLRISRPNDY 214
>gi|401399659|ref|XP_003880603.1| novel protein (Zgc:77804), related [Neospora caninum Liverpool]
gi|325115014|emb|CBZ50570.1| novel protein (Zgc:77804), related [Neospora caninum Liverpool]
Length = 460
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 26 TVAAAAAAAVPVVGSTITRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLA-QAAGN 82
T AA+ A TR+ RRLY GN+P G+TE + +M G N
Sbjct: 210 TGAASTQAGSDAATMNSTRKLRRLYFGNLPLHLGLTESTFQDVVWTEMKNRGFCNDPEAN 269
Query: 83 PVLACQINLDK-NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
PVL DK N+ F+EF +++ET +A+ DG+ G LK+ RP+DY T
Sbjct: 270 PVLYVWFAKDKGNYGFVEFSTVEETERALTMDGMLCMGIPLKVSRPNDYSTT 321
>gi|348681357|gb|EGZ21173.1| hypothetical protein PHYSODRAFT_488481 [Phytophthora sojae]
Length = 640
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 27 VAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA 86
+A A+ V + + + AR LYVGN+P VT ++ EF + + GL GNP++
Sbjct: 257 IAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIIN 316
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY----QPTPGVTDNAAV 142
I+ D +FAF E RS++E A+ + ++ GQ LK RP + QP P ++
Sbjct: 317 TWISTDGHFAFCEMRSVEECNLALLLNQLSLLGQPLKFGRPRSFMGPPQPMPQISARTQT 376
Query: 143 AV 144
A+
Sbjct: 377 AL 378
>gi|237829727|ref|XP_002364161.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Toxoplasma gondii ME49]
gi|211961825|gb|EEA97020.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Toxoplasma gondii ME49]
gi|221481075|gb|EEE19483.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF, putative
[Toxoplasma gondii GT1]
gi|221507020|gb|EEE32624.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF, putative
[Toxoplasma gondii VEG]
Length = 704
Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQA----RRLYVGNIPFGVTEDEMMEF 66
GAA + ++P TVA +AA + P + A R LYVGN+P + ++MEF
Sbjct: 75 GAAPTVAGTTLLP--TVAPSAAFSGPASSLALDAAATKAARELYVGNLPPSLEVPQLMEF 132
Query: 67 FNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
N M G A G P + + D ++AF+EFR+++E + M +G+N G +L+I R
Sbjct: 133 LNAAMAAVGGALLPGPPAVKAWRSTDGHYAFVEFRTMEEASNGMQLNGLNCMGFNLRIGR 192
Query: 127 PHDY 130
P Y
Sbjct: 193 PKTY 196
>gi|224077136|ref|XP_002305148.1| predicted protein [Populus trichocarpa]
gi|222848112|gb|EEE85659.1| predicted protein [Populus trichocarpa]
Length = 296
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 53/162 (32%)
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVI 149
R+++E + AMA DGI F+G ++++RRP DY P+ T + AAV + G I
Sbjct: 1 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAATLGPSQPSPLLNLAAVGLVPGTI 60
Query: 150 STVVPDSPHKIFIGGLPNYLNE-------------------------------------- 171
S + P ++F+GGLP Y E
Sbjct: 61 SGA--EGPDRVFVGGLPYYFTEIQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDP 118
Query: 172 ---DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
D A A LNG+++GDK L V+RA+ + +Q + Q
Sbjct: 119 AVTDIACAALNGLKMGDKTLTVRRATESGGQSKSEQENILAQ 160
>gi|70953821|ref|XP_745988.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526476|emb|CAH87878.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 279
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE+ E +M NPVL DK N+ F+
Sbjct: 180 TRKLRRLYFGNLPLHLGLTENAFQEIVWDEMKKRKFCNNENINPVLYVWFAKDKGNYGFV 239
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EF +++ET +A+ DG+ KG ++KI RP+DY
Sbjct: 240 EFSTVEETEKALTMDGMLCKGVAIKISRPNDY 271
>gi|221504342|gb|EEE30017.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 481
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 26 TVAAAAAAAVPVVGSTITRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGL-AQAAGN 82
T AA+ A TR+ RRLY GN+P G+TE + +M G + N
Sbjct: 232 TGAASTQAGSDAATMNSTRKLRRLYFGNLPLHLGLTESTFQDVVWNEMKNRGFCSNPEAN 291
Query: 83 PVLACQINLDK-NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
PVL DK N+ F+EF +++ET +A+ DG+ G LK+ RP+DY T
Sbjct: 292 PVLYVWFAKDKGNYGFVEFATVEETERALTMDGMLCMGIPLKVSRPNDYSTT 343
>gi|221483634|gb|EEE21946.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 488
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 26 TVAAAAAAAVPVVGSTITRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGL-AQAAGN 82
T AA+ A TR+ RRLY GN+P G+TE + +M G + N
Sbjct: 239 TGAASTQAGSDAATMNSTRKLRRLYFGNLPLHLGLTESTFQDVVWNEMKNRGFCSNPEAN 298
Query: 83 PVLACQINLDK-NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
PVL DK N+ F+EF +++ET +A+ DG+ G LK+ RP+DY T
Sbjct: 299 PVLYVWFAKDKGNYGFVEFATVEETERALTMDGMLCMGIPLKVSRPNDYSTT 350
>gi|237841109|ref|XP_002369852.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211967516|gb|EEB02712.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 538
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 26 TVAAAAAAAVPVVGSTITRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGL-AQAAGN 82
T AA+ A TR+ RRLY GN+P G+TE + +M G + N
Sbjct: 289 TGAASTQAGSDAATMNSTRKLRRLYFGNLPLHLGLTESTFQDVVWNEMKNRGFCSNPEAN 348
Query: 83 PVLACQINLDK-NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
PVL DK N+ F+EF +++ET +A+ DG+ G LK+ RP+DY T
Sbjct: 349 PVLYVWFAKDKGNYGFVEFATVEETERALTMDGMLCMGIPLKVSRPNDYSTT 400
>gi|401410983|ref|XP_003884939.1| putative U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Neospora caninum Liverpool]
gi|325119358|emb|CBZ54911.1| putative U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Neospora caninum Liverpool]
Length = 588
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R LYVGN+P + ++MEF N M G A G P + + D ++AF+EFR+++E
Sbjct: 117 RELYVGNLPPSLEVPQLMEFLNAAMAAVGGALLPGPPAVKAWRSTDGHYAFVEFRTMEEA 176
Query: 107 TQAMAFDGINFKGQSLKIRRPHDYQ-------PTPGV-TDNAAVAVPAGVISTVVPDSPH 158
+ M +G+N G +L+I RP Y P P + + A+ AG++ +P
Sbjct: 177 SNGMQLNGLNCMGFNLRIGRPKTYPQDMNHLIPPPTIPLLHPQAAMGAGIVGGALPG--- 233
Query: 159 KIFIGGLPNYLNEDQAIAGLNGMQ 182
+ +G +P A+AG+ G Q
Sbjct: 234 -VGLGAVPGAAGLPGAVAGVPGAQ 256
>gi|156085070|ref|XP_001610018.1| RNA recognition motif (RRM)-containing protein [Babesia bovis]
gi|154797270|gb|EDO06450.1| RNA recognition motif (RRM)-containing protein [Babesia bovis]
Length = 383
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHL--SGLAQAAG 81
E + AA+ + G ++ RRLY+GN+P G T ++EF + + L Q
Sbjct: 36 EESPAASNDFNDKLGGDDNKKRHRRLYIGNLPSGTTYKALVEFLSAALRLPNDDSGQTVQ 95
Query: 82 NPVLACQ--INLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
P ++ N D+ + FLEF + + DGINFKG+ LKIRRP DY T D
Sbjct: 96 VPHISKTEIFNEDQGYCFLEFSTPELADACFKLDGINFKGKLLKIRRPIDYGTTSSSED 154
>gi|357446501|ref|XP_003593528.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355482576|gb|AES63779.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 593
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G + +G+ V+ IN +K FAF+E R
Sbjct: 174 TRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMR 233
Query: 102 SIDETTQAMAFDGINFKG 119
+++E + AMA DGI F+G
Sbjct: 234 TVEEASNAMALDGIVFEG 251
>gi|403364994|gb|EJY82272.1| Snrnp splicing factor (U2AF), putative [Oxytricha trifallax]
Length = 411
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R+LYVGN+P G+T+ +++ N+ M + + GNPV++ I+ D ++AF+EFR+ +E
Sbjct: 135 RKLYVGNLPPGITQRMLIDVVNEAMLSLNVIEEPGNPVVSAWISSDSHYAFVEFRTAEEA 194
Query: 107 TQAMAFDGINFKGQSLKIRRPHDYQPT 133
G+N + +KI RP Y T
Sbjct: 195 NHGFNLQGMNIQNNEIKIGRPKAYSGT 221
>gi|5822501|pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 43/84 (51%), Gaps = 41/84 (48%)
Query: 158 HKIFIGGLPNYLNEDQ-----------------------------------------AIA 176
HK+FIGGLPNYLN+DQ AIA
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 177 GLNGMQLGDKKLIVQRASVGAKNA 200
GLNGMQLGDKKL+VQRASVGAKNA
Sbjct: 62 GLNGMQLGDKKLLVQRASVGAKNA 85
>gi|299473655|emb|CBN78049.1| RNA-binding region-containing protein (RNP-1) [Ectocarpus
siliculosus]
Length = 1955
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 32 AAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL 91
AA P + S I ++VGNIP G T+ +++F N M GL GNPV +C++N
Sbjct: 1822 AAMTPQMKSQI-----EIFVGNIPVGTTQQGLVDFLNAAMLKVGLNLQPGNPVTSCRLN- 1875
Query: 92 DKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
FAF R+ +E +A+ +GI + G LK++RP Y
Sbjct: 1876 -SKFAFCVMRNPEEAAKALNLNGIPYLGNVLKMQRPSSY 1913
>gi|298705062|emb|CBJ28521.1| U2 small nuclear ribonucleoprotein auxiliary factor large subunit
[Ectocarpus siliculosus]
Length = 301
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
T+ R LY+GN +T+ + +F + M G +Q G+P++ +++ NFAF+E R+
Sbjct: 37 TKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVS--GNFAFVECRT 94
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDY 130
++ETT + + I F GQ LKI RP Y
Sbjct: 95 VEETTALLNLNNIPFLGQELKINRPSKY 122
>gi|124511860|ref|XP_001349063.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23498831|emb|CAD50908.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 1125
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 35 VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ-QMHLSGLAQAAGNPVLACQINLDK 93
+P + I + AR LYVGNIP + E++++ N + L N L I D
Sbjct: 639 LPTIDVNIEKTARELYVGNIPQHIDIQEIVKYLNSCLLILYNKENENENICLKACIRGDT 698
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
++AF+EFR+I +T+ M +GINF G +L+I RP +
Sbjct: 699 HYAFVEFRNIQDTSNCMLLNGINFYGNNLRIGRPKTF 735
>gi|301121478|ref|XP_002908466.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
gi|262103497|gb|EEY61549.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
Length = 597
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 27 VAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA 86
+A A+ V + + + AR LYVGN+P VT ++ EF + + GL GNP++
Sbjct: 227 IAKMQASNVTMAAAVAQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQPGNPIIN 286
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY----QPTPGVTDNAAV 142
+ D +FAF E RS++E A+ + ++ GQ LK RP + QP P V+
Sbjct: 287 TWTSTDGHFAFCEMRSVEECNLALLLNQLSLLGQPLKFGRPRSFMGPPQPMPQVSARTQT 346
Query: 143 AV 144
A+
Sbjct: 347 AL 348
>gi|66475436|ref|XP_627534.1| splicing factor U2AF U2 snRNP auxiliary factor large subunit; 3 RRM
domains [Cryptosporidium parvum Iowa II]
gi|32398751|emb|CAD98711.1| splicing factor, possible [Cryptosporidium parvum]
gi|46228987|gb|EAK89836.1| splicing factor U2AF U2 snRNP auxiliary factor large subunit; 3 RRM
domains [Cryptosporidium parvum Iowa II]
Length = 492
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQ 70
+ +IP+++ E T A A S ++ R +YVGN+P G+T E++E+ N+
Sbjct: 80 ASYSEIPSDINQCELTEIVPAGTAYLNSTSFTSKPLREVYVGNLPQGITVTELLEYINRS 139
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE-TTQAMAFDGINFKGQSLKIRRP 127
+ + ++ GNPV++ IN D +AF E RSI+E T + ++FKG L+I +P
Sbjct: 140 IIKNSVSHTNGNPVVSAWINSDGKYAFCECRSIEEANTLLRLNNLLSFKGNLLRIGKP 197
>gi|357017085|gb|AET50571.1| hypothetical protein [Eimeria tenella]
Length = 527
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFN-------QQMHLSGLAQAAGNPVL---- 85
V S R ARRL++ NIP G TE ++ FFN Q + L+ A+ P L
Sbjct: 155 VTHSESDRIARRLFISNIPPGTTEADICGFFNGALLAVNAQTGYTDLSLASDKPQLLPVE 214
Query: 86 ACQ-INLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAV 144
C+ + + FL+ RS + + DGI F SLK+ RP +Y PG V +
Sbjct: 215 RCEGLQENSRHCFLDLRSHEWVVLCLKLDGITFNNNSLKVLRPKEYVQPPGGDPAKTVHI 274
Query: 145 PA----------GVISTVVPDSPH-KIFIGGLPNYLNEDQ 173
P V +T P S K++I LP + EDQ
Sbjct: 275 PELERGTKPQQNEVRATAPPRSADCKLYIQNLPPEMGEDQ 314
>gi|156084160|ref|XP_001609563.1| hypothetical protein [Babesia bovis T2Bo]
gi|154796815|gb|EDO05995.1| hypothetical protein BBOV_II000350 [Babesia bovis]
Length = 409
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE+ +M +PVL DK N+ F+
Sbjct: 178 TRKLRRLYFGNLPVASGLTENAFQNIIWNEMRTRNFCNDPNVSPVLYVWFAKDKGNYGFV 237
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT------PGVTDNAAVAVPA------ 146
EF +++ET +A+ DG+N G L++ RP+DY T PG+ V + A
Sbjct: 238 EFATVEETERALTMDGMNCMGAQLRVSRPNDYSTTATRQVIPGIATQNIVPLDAFTGSCL 297
Query: 147 GVISTVVPDS 156
V+ V+P+S
Sbjct: 298 RVVQIVLPES 307
>gi|300123325|emb|CBK24598.2| unnamed protein product [Blastocystis hominis]
Length = 235
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
LYVGNI G ++++ F N+ MH + L GNPVL+C+I L K F F+ R DE T
Sbjct: 153 LYVGNIDEGTFPEDVVAFLNRAMHTARLNLWPGNPVLSCRI-LPK-FCFVSLRHEDEATA 210
Query: 109 AMAFDGINFKGQSLKI 124
A+ DGI F GQ L+I
Sbjct: 211 ALNMDGIYFHGQRLRI 226
>gi|347968831|ref|XP_003436305.1| AGAP002908-PB [Anopheles gambiae str. PEST]
gi|333467821|gb|EGK96708.1| AGAP002908-PB [Anopheles gambiae str. PEST]
Length = 144
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 181 MQLGDKKLIVQRASVGAKNASGQ-QAPVQIQVPGLTQVGQAGPATE 225
MQLGDKKLIVQRASVGAKN++ APVQIQVPGL+ VG +GP TE
Sbjct: 1 MQLGDKKLIVQRASVGAKNSNAAVVAPVQIQVPGLSLVGSSGPPTE 46
>gi|156086444|ref|XP_001610631.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797884|gb|EDO07063.1| conserved hypothetical protein [Babesia bovis]
Length = 400
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
T+ R +Y+GNIP + ++EF N + GNP I+ D ++AF+E R+
Sbjct: 21 TKPYREIYIGNIPPQADVNNLLEFLNDALTAVNGTSIPGNPCQKGWISADSHYAFVEMRT 80
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
++E + + GIN+ SL+I RP Y P
Sbjct: 81 MEEASNCIQLSGINYMNYSLRINRPKTYNP 110
>gi|428671645|gb|EKX72563.1| conserved hypothetical protein [Babesia equi]
Length = 455
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
TR R +YVGNIP +++F N+ + GNP L I+ D ++AF+E R+
Sbjct: 73 TRPYREIYVGNIPPVSDVSTLLDFLNEALIAINGTSMPGNPCLKGWISSDSHYAFIELRT 132
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
++E + M G+N G ++++ RP Y P
Sbjct: 133 MEEASNCMQLTGLNCMGYNIRVNRPKTYTP 162
>gi|406699650|gb|EKD02849.1| splicing factor (U2 snRNP auxiliary factor large subunit)
[Trichosporon asahii var. asahii CBS 8904]
Length = 487
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 54/198 (27%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
Q +R+Y + + E+ + + FN+ + G G V +IN +K++ ++EF S D
Sbjct: 135 QKKRIYFAGVTDAMNENRLRKLFNKVLRDVGYD---GEAVSGVEINKEKDYVWVEFVSSD 191
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
++F G ++ +RP D+ G+ PA V D +K+F+GG
Sbjct: 192 LAQVVFNKKDLDFDGAPIEPKRPKDFV---GID-------PALGFMGVSGDPNNKLFVGG 241
Query: 165 LPNYLNEDQ-----------------------------------------AIAGLNGMQL 183
LP L D+ AI GLNG QL
Sbjct: 242 LPTTLGSDEVKELLTPFGELRTFNLVKEGNGSVSKGFAFVEFLDPAVTDIAIQGLNGFQL 301
Query: 184 GDKKLIVQRASVGAKNAS 201
GD+ L+VQRA+ ++AS
Sbjct: 302 GDRALVVQRAATTGRSAS 319
>gi|124360614|gb|ABN08613.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 257
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G + +G+ V+ IN +K FAF+E R
Sbjct: 174 TRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMR 233
Query: 102 SIDETTQAMAFDGINFKGQSL 122
+++E + AMA DGI F+ +
Sbjct: 234 TVEEASNAMALDGIVFEASTF 254
>gi|224125466|ref|XP_002329812.1| predicted protein [Populus trichocarpa]
gi|222870874|gb|EEF08005.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 53/162 (32%)
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVI 149
R+++E + AM DGI F+G ++++RRP DY P+ T + AAV + G I
Sbjct: 1 MRTVEEASNAMTLDGIIFEGVAVRVRRPTDYNPSLAATLGPSQPSPLLNLAAVGLVPGTI 60
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQ------------------------------------ 173
S + P ++F+GGLP Y E Q
Sbjct: 61 SGA--EGPDRVFVGGLPYYFTETQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDP 118
Query: 174 -----AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
A A LNG+++GDK L V+R + + +Q + Q
Sbjct: 119 AVTDIACAALNGLKMGDKTLTVRRGTESGGQSRSEQENILAQ 160
>gi|124513290|ref|XP_001350001.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23615418|emb|CAD52409.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 527
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G++E+ E +M NPVL DK N+ F+
Sbjct: 237 TRKLRRLYFGNLPLHLGLSENAFQEIVWNEMKKRKYCNDENINPVLYVWFAKDKGNYGFV 296
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EF +++ET +A+ DG+ KG +LK+ RP+DY
Sbjct: 297 EFATVEETERALTMDGMICKGVALKVSRPNDY 328
>gi|145523992|ref|XP_001447829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415351|emb|CAK80432.1| unnamed protein product [Paramecium tetraurelia]
Length = 419
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R+LYVGN+P E+ +F NQ + G++ + C I+ + +F F+EFRS +E
Sbjct: 150 RKLYVGNLPPNSQPKELQDFLNQTLLKMGVSSEHAGSICNCWIDSNGHFGFIEFRSPEEA 209
Query: 107 TQAMAFDGINFKGQSLKIRRPHDY 130
TQ + FKG LKI RP +
Sbjct: 210 TQGFILKDVIFKGHQLKIGRPKSF 233
>gi|294954306|ref|XP_002788102.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239903317|gb|EER19898.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 336
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 13/100 (13%)
Query: 43 TRQARRLYVGNIP--FGVTEDEMMEFFNQQM-----HLSGLAQAAGNPVLACQINLDK-- 93
TR+ RRLYV N+P G+TE EF QQ+ +A +PVL +K
Sbjct: 93 TRKNRRLYVANLPIQLGLTE----EFLGQQLFAALRERGCIASDGHSPVLHVWFAREKGG 148
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
N+ F+EF ++++T A+A DG+ G + IRRP DYQ +
Sbjct: 149 NYGFVEFATLEDTENALALDGLVVMGAPITIRRPSDYQDS 188
>gi|320590609|gb|EFX03052.1| splicing factor u2af large subunit [Grosmannia clavigera kw1407]
Length = 420
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 52/149 (34%)
Query: 97 FLEFRSIDETTQAMAFDGINFK-------GQS-LKIRRPHDYQPTPGVTDNAAVAVPAGV 148
+EF+ + T A+A +GI+ + GQS L I+RP DY P V D +V P GV
Sbjct: 1 MVEFKEPIDATVALALNGISMEAEDASGSGQSGLSIQRPKDY-IVPAVVD-YSVYHP-GV 57
Query: 149 ISTVVPDSPHKIFIGGLPNYLNEDQ----------------------------------- 173
+S VV D+P KI I +P+YL+++Q
Sbjct: 58 VSNVVIDTPFKIAITNIPSYLSDEQVTELLVSFGELRAFVLLKDRSTEESRGVAFCEYTE 117
Query: 174 ------AIAGLNGMQLGDKKLIVQRASVG 196
AI GLNGM LGD+KL VQ+AS+G
Sbjct: 118 PQSTDVAIQGLNGMDLGDRKLRVQKASIG 146
>gi|221052716|ref|XP_002261081.1| RNA binding domain [Plasmodium knowlesi strain H]
gi|194247085|emb|CAQ38269.1| RNA binding domain [Plasmodium knowlesi strain H]
Length = 1014
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 2 GVNNEVLNTGAAGQIPANVIIPETTVAAAAAA---AVPVVGSTITRQARRLYVGNIPFGV 58
G+N LN GQ+ + + + +A A+P + +T + AR LYVGNIP +
Sbjct: 477 GLNTPQLNMILNGQLKLDNPVLQQLCKSALGINDLALPSLDATAEKTARELYVGNIPQHI 536
Query: 59 TEDEMMEFFNQQMHL-----SGLAQAAGNPV--------------------LACQINLDK 93
E+++F N+ + + SG Q N + L I D
Sbjct: 537 EVQEIVKFLNKCLLILYNKESGEEQEKDNEMKNGMVKEEEKHNQNQCEEICLKACIRGDT 596
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
++AF+EFR++ +T+ M +GINF G +L+I RP +
Sbjct: 597 HYAFVEFRTLQDTSNCMLLNGINFYGNNLRIGRPKTF 633
>gi|110741990|dbj|BAE98934.1| splicing factor like protein [Arabidopsis thaliana]
Length = 341
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 13 AGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQQ 70
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 204 AGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQV 262
Query: 71 MH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+
Sbjct: 263 MAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKV 317
>gi|397623851|gb|EJK67169.1| hypothetical protein THAOC_11833 [Thalassiosira oceanica]
Length = 436
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
T+ +R L+VGN P G +E +M+F + M L P++ C+ N DK F F+E +
Sbjct: 66 TKLSRELFVGNTPPGTSEALLMQFLSGAMSRVNLCPPDVTPIVTCRKN-DK-FCFIELAT 123
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDY 130
+D +A+ +GI F G SL++ RP Y
Sbjct: 124 VDLANKALNLNGIPFLGSSLRVARPSKY 151
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+ +R L++GN +T + + +F + M GL+ GNP++ + FAF+E RS+
Sbjct: 191 KLSRELFIGNTTPEMTAEMLRDFLGRAMEQVGLSTMPGNPIVT--VRPSAKFAFIEVRSM 248
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDY 130
E A+ + I + G L++ RP Y
Sbjct: 249 QEAANALNLNNIPYLGAQLRVGRPSKY 275
>gi|389585165|dbj|GAB67896.1| U2 snRNP auxiliary factor [Plasmodium cynomolgi strain B]
Length = 894
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRS 102
++ R+LY+G+I +D +E + P+L C+I N++ F FLEFRS
Sbjct: 541 KKQRKLYIGSI----IKDSSLEI--------KIGDIVLMPILKCEIFNVESRFCFLEFRS 588
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVA---VPAGVISTVVP----- 154
++ T + D I+F L+I RPHD+ P PG V + V V P
Sbjct: 589 LEITWLCLRLDAISFNNYCLRIARPHDFVPPPGGDPALTVVFTDINHEVFEMVKPVKIAP 648
Query: 155 -----DSPHKIFIGGLPNYLNEDQ 173
D +K++I LP+ L +DQ
Sbjct: 649 VRSTGDDDNKLYIQNLPHDLRDDQ 672
>gi|118376950|ref|XP_001021657.1| hypothetical protein TTHERM_00151210 [Tetrahymena thermophila]
gi|89303423|gb|EAS01411.1| hypothetical protein TTHERM_00151210 [Tetrahymena thermophila
SB210]
Length = 554
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 32/152 (21%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
A R+Y+GNIP V +++ +F +QM +G GNP+ RSI+
Sbjct: 215 HALRVYIGNIPDPVDVEDVCKFVFEQMANAGGLLEPGNPL----------------RSIE 258
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDY---------QPTPGVTDNAAVAVPAGVISTVVPD 155
ET+ M DGI +KG+SL+ RRP D+ +P P + ++ T V +
Sbjct: 259 ETSACMELDGIIYKGKSLRFRRPKDFGVLQKVEGTRPVPTLD-----KTKLKIVQTQVEN 313
Query: 156 SPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKK 187
+ +K+ I LP +E+ + L + GD K
Sbjct: 314 TYNKLQIMNLPENFSEEHVMQLL--LTYGDLK 343
>gi|323451698|gb|EGB07574.1| hypothetical protein AURANDRAFT_64670 [Aureococcus anophagefferens]
Length = 214
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVL-ACQINLDKNFAFLEFR 101
TR+ RRLYVGN+P +++ F N+ + G A + V+ + ++ DK FAF+E
Sbjct: 50 TRKERRLYVGNLPQTFDSEQLRIFLNEALRACGAIPAGVDEVVVSSWVSPDKKFAFVELS 109
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+++ T ++ GI G LKI P++Y
Sbjct: 110 TVEAATTSLGLSGITCMGCQLKICHPNNY 138
>gi|213408691|ref|XP_002175116.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
gi|212003163|gb|EEB08823.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
Length = 511
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 59/224 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP----VLACQINLDKNFAFL 98
+RQARRL V +P +++ F + + S + + C+ + +A +
Sbjct: 185 SRQARRLKVKELPAEFEVEDLKNVFEESISTSSFHKDRDTKHVTAIYPCKT---ERYAII 241
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPH 158
E + ++ T + FK +++ I R Y P ++ A P ++ V DS
Sbjct: 242 ELATPEDATFIWGARKLKFKNETVLIDRLEGY-IVPQISSEVAQKRPKNDLNQKVLDSAD 300
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------------AIAG 177
K++IG LP YLNEDQ A+ G
Sbjct: 301 KVYIGSLPLYLNEDQISELLKPFGELQSLFLAKNSADMTSRGYAFCEYISSESATAAVQG 360
Query: 178 LNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAG 221
LN M+ GD +L+VQ A VG +Q VP VG A
Sbjct: 361 LNNMEFGDTRLMVQFACVG----------IQQPVPSPRSVGMAA 394
>gi|294882044|ref|XP_002769579.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239873131|gb|EER02297.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 324
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Query: 43 TRQARRLYVGNIP--FGVTEDEMMEFFNQQM-----HLSGLAQAAGNPVLACQINLDK-- 93
TR+ RRLYV N+P G+TE EF QQ+ +A +PVL +K
Sbjct: 82 TRKNRRLYVANLPIQLGLTE----EFLGQQLFAALRERGCVATDGHSPVLHVWFAREKGG 137
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
N+ F+EF ++++T A+ DG+ G + IRRP DYQ +
Sbjct: 138 NYGFVEFATLEDTENALTLDGLVVMGAPITIRRPSDYQDS 177
>gi|428671141|gb|EKX72059.1| splicing factor subunit, putative [Babesia equi]
Length = 391
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 43 TRQARRLYVGNIP--FGVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE +M +PVL DK N+ F+
Sbjct: 155 TRKLRRLYFGNLPIHMGLTETGFQNLVWNEMRNRNFCNDPNVSPVLYVWFAKDKGNYGFV 214
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT--PGVTDNAAVAVPAGVISTV 152
EF +++ET +A+ DG++ G L++ RP+DY T A + +P S++
Sbjct: 215 EFATVEETERALTMDGMSCMGVQLRVSRPNDYSSTSMKSAMQQAVMPIPTMTTSSI 270
>gi|399216439|emb|CCF73127.1| unnamed protein product [Babesia microti strain RI]
Length = 424
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 20/109 (18%)
Query: 44 RQARRLYVGNIP-------FGVTEDEMMEFFN----QQMHLSGL-AQAAGNPVLACQ-IN 90
R+ RRLY+GN+P G ++ +++ F N + +G+ A A P+ C+ N
Sbjct: 57 RRHRRLYIGNVPAGNHNTNLGSSQSDIVAFLNGALLTVLSNTGMPATPADTPITKCESFN 116
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGI-------NFKGQSLKIRRPHDYQP 132
+ F F+E R++D T + DGI N+ G +LKI RP DY P
Sbjct: 117 SENRFCFIELRNVDVTLVCLKMDGISLVDSGINYNGNALKISRPSDYVP 165
>gi|84998934|ref|XP_954188.1| splicing factor [Theileria annulata]
gi|65305186|emb|CAI73511.1| splicing factor, putative [Theileria annulata]
Length = 425
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE +M +PVL DK N+ F+
Sbjct: 189 TRKLRRLYFGNLPVHTGLTETGFQNLIWNEMRNRNFCNDPNVSPVLYVWFAKDKGNYGFV 248
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT-DNAAVAVPA-GVISTVVP 154
EF S++ET +A+ DG+ G L++ RP+DY T T + VP ST +P
Sbjct: 249 EFASVEETERALTMDGMTCMGVQLRVSRPNDYSSTSMKTATQQQIVVPQLSTSSTTLP 306
>gi|2459426|gb|AAB80661.1| putative splicing factor U2AF large chain [Arabidopsis thaliana]
Length = 475
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 42/156 (26%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFR 101
TR+ RRLY N+P +E ++E FN M SG G+ P ++C F
Sbjct: 206 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCI-----------FL 254
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
+ + + A++ DG +F G +LKIRRP DY ++ V P K +
Sbjct: 255 TPQDASAALSLDGCSFAGSNLKIRRPKDY-----------------LMEIVSVFGPLKAY 297
Query: 162 IGGLPNYLNED-------------QAIAGLNGMQLG 184
N LN+ +A AGLNGM+LG
Sbjct: 298 RFVSNNDLNQRCAFLEYTDGSVTLKACAGLNGMRLG 333
>gi|71032941|ref|XP_766112.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353069|gb|EAN33829.1| hypothetical protein, conserved [Theileria parva]
Length = 431
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE +M +PVL DK N+ F+
Sbjct: 195 TRKLRRLYFGNLPVHTGLTETGFQNLIWNEMRNRNFCNDPNVSPVLYVWFAKDKGNYGFV 254
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT 137
EF S++ET +A+ DG+ G L++ RP+DY T T
Sbjct: 255 EFASVEETERALTMDGMTCMGVQLRVSRPNDYSSTSMKT 293
>gi|291001985|ref|XP_002683559.1| predicted protein [Naegleria gruberi]
gi|284097188|gb|EFC50815.1| predicted protein [Naegleria gruberi]
Length = 477
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 54/189 (28%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL--AQAAGNPVLA--------------- 86
+Q R++YVG IP +E +++EFF Q+ +G+ NP A
Sbjct: 48 KQLRKIYVGGIPDNSSERDIIEFFTIQLRKAGMDYTNHKYNPQPANSLELLIMSTGASNA 107
Query: 87 ---------------CQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDY 130
QI++ K +AF++FR+ E T + +G F+G LKI RP D+
Sbjct: 108 NSGYNSQYQFTDDNVIQISMHKGYAFVDFRTPQEATYCVNCLNGTQFRGSILKINRPKDF 167
Query: 131 ---QPTPGVTDNAA-------VAVPAGVISTV-----------VPDSPHKIFIGGLPNYL 169
Q T T N A A+ +++ V + DSP+K+FIG LP L
Sbjct: 168 VDPQVTICYTYNRANGGKSSGSAISNQIVNDVLIDVMPSKNGFILDSPNKLFIGNLPKEL 227
Query: 170 NEDQAIAGL 178
+ Q L
Sbjct: 228 SLKQICGYL 236
>gi|403220964|dbj|BAM39097.1| splicing factor [Theileria orientalis strain Shintoku]
Length = 463
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+TE +M +PVL DK N+ F+
Sbjct: 227 TRKLRRLYFGNLPVNTGLTETGFQNLIWNEMRNRNFCNDPNVSPVLYVWFAKDKGNYGFV 286
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
EF S++ET +A+ DG+ G L++ RP+DY T
Sbjct: 287 EFASVEETERALTMDGMTCMGVQLRVSRPNDYSST 321
>gi|403223258|dbj|BAM41389.1| snRNP splicing factor U2AF [Theileria orientalis strain Shintoku]
Length = 534
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
TR R +Y+GNIP +++ NQ + GNP L I+ D ++AF+E R+
Sbjct: 120 TRPYREIYIGNIPPVGDIAILLDIINQALISVNGTSMPGNPCLKGWISSDGHYAFVELRT 179
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
++E + M G+N G ++K+ RP Y P
Sbjct: 180 MEEASNCMQLTGLNIMGHNIKVNRPKTYDP 209
>gi|209881648|ref|XP_002142262.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209557868|gb|EEA07913.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 396
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 43 TRQARRLYVGNIPF--GVTEDEMMEFFNQQMHLSGLAQA-AGNPVLACQINLDK-NFAFL 98
TR+ RRLY GN+P G+ E + ++M + NP+L K + F+
Sbjct: 153 TRKLRRLYFGNLPLHLGLNEHIFQDIVWKEMITRNMCNNPKENPILCVWFAQKKGTYGFV 212
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
EFR+++ET +A+ DG+N G +K+ RP+DY
Sbjct: 213 EFRTVEETERALNLDGMNCMGVQIKVSRPNDY 244
>gi|67593828|ref|XP_665753.1| splicing factor [Cryptosporidium hominis TU502]
gi|54656571|gb|EAL35522.1| splicing factor [Cryptosporidium hominis]
Length = 491
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE- 105
R +YVGN+P G+T E++E+ N+ + + ++ GNPV++ IN D +AF E RSI+E
Sbjct: 115 REVYVGNLPQGITVAELLEYINRSIIKNSVSHTHGNPVVSAWINSDGKYAFCECRSIEEA 174
Query: 106 TTQAMAFDGINFKGQSLKIRRP 127
+ ++FKG L+I +P
Sbjct: 175 NALLRLNNLLSFKGNLLRIGKP 196
>gi|403345499|gb|EJY72120.1| Splicing factor U2af large subunit, putative [Oxytricha trifallax]
Length = 437
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 34/152 (22%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGNPVLACQINLDKNFAFLEFRS 102
R+LYVGNIP G+ ++ME N + +G+ Q G+P++ I+ D ++AF++FR+
Sbjct: 95 RQLYVGNIPPGLAVPQIMELLNTALKELGKDAGIFQE-GDPIVGAWISGDGHYAFVDFRT 153
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFI 162
+E TQ A ++ G +LK+ RP NA +P +P ++
Sbjct: 154 AEEATQGFALQQVSIHGNNLKVGRPK----------NATGPIP----------NPSQLLA 193
Query: 163 GGLPNYL--------NEDQAIAGLNGMQLGDK 186
G PN + N+ + GL +QLGD+
Sbjct: 194 GN-PNLMSGQNVISNNKKKTNQGLKNLQLGDQ 224
>gi|403224363|dbj|BAM42493.1| splicing factor [Theileria orientalis strain Shintoku]
Length = 377
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFN-QQMHLSGLAQAAGNPVLACQ--INLDKNFAFLEF 100
++ +RLY+GN+P G+ +++EFFN + + Q +P+++ N ++ + FLEF
Sbjct: 51 KRQKRLYIGNLPAGMKLGDVVEFFNGALLAMVPSNQTTKDPLVSKTEIYNPEQGYCFLEF 110
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
++ + T A DGI G SLKIRRP D+
Sbjct: 111 KTPELTDLAFKLDGITCNGYSLKIRRPIDF 140
>gi|85000357|ref|XP_954897.1| snrnp splicing factor (U2AF) [Theileria annulata strain Ankara]
gi|65303043|emb|CAI75421.1| snrnp splicing factor (U2AF), putative [Theileria annulata]
Length = 486
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
++ R +Y+GNIP + +M+ NQ + GNP L I+ D ++AF+E R+
Sbjct: 100 SKAFREIYIGNIPPVGDIEILMDIINQALISVNGTSMPGNPCLKGWISSDGHYAFIELRT 159
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDY 130
++E + M G+N G ++K+ RP Y
Sbjct: 160 MEEASNCMQLTGLNIMGHNIKVNRPKTY 187
>gi|307110476|gb|EFN58712.1| hypothetical protein CHLNCDRAFT_50180 [Chlorella variabilis]
Length = 522
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 13/98 (13%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMM-EFFNQQMHLSGLAQAAGNPVLAC----QINLDK- 93
T R+AR +Y+GN+ G+ E++ EFF+Q A +PV +C +N+D
Sbjct: 142 ETAARKAREIYIGNLAIGIITPELLREFFDQV-----FAHQVADPV-SCPPVTNVNMDTT 195
Query: 94 -NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
FAF+EF++ D T+A+ D + G+++ I RP Y
Sbjct: 196 GRFAFVEFQTEDMATKALEMDKVELCGRAMNIGRPKGY 233
>gi|82794077|ref|XP_728296.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23484570|gb|EAA19861.1| KED [Plasmodium yoelii yoelii]
Length = 858
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 32 AAAVPVVG-STI----TRQARRLYVGNIPFGVTEDEMMEFFNQ-QMHLSGLAQAAGNPVL 85
A +P +G STI + AR LYVGNIP + E+++F N + L N L
Sbjct: 395 AFGIPELGLSTIDANAEKTARELYVGNIPQNIDIQEIVKFLNTCLLILYNKENENENICL 454
Query: 86 ACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
I D +AF+EFRS+ +T+ M +GI F +L+I RP +
Sbjct: 455 KACIRGDTRYAFVEFRSLQDTSNCMLLNGIYFYTNNLRIGRPKTF 499
>gi|68076889|ref|XP_680364.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501286|emb|CAI04220.1| conserved hypothetical protein [Plasmodium berghei]
Length = 652
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 26 TVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPV 84
T + + + + + AR LYVGNIP + E+++F N + L N
Sbjct: 193 TAFGISELGLSTIDANAEKTARELYVGNIPQNIDIQEIVKFLNTCLLILYNKENENENIC 252
Query: 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
L I D +AF+EFRS+ +T+ M +GI F +L+I RP +
Sbjct: 253 LKACIRGDTRYAFVEFRSLQDTSNCMLLNGIYFYTNNLRIGRPKTF 298
>gi|70954273|ref|XP_746191.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526725|emb|CAH88205.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 686
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPV-------VGSTITRQARRLYVGNIPFGVTEDEMM 64
A Q P N+++ ++ A+ + + + + AR LYVGNIP + E++
Sbjct: 212 ALNQSPLNLLLNTQSLQQLYKTALGIGELGLSTIDANAEKTARELYVGNIPQNIDIQEIV 271
Query: 65 EFFNQQMHLSGLAQAAGNPVL--ACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122
+F N + + + + AC I D +AF+EFRS+ +T+ M +GI F +L
Sbjct: 272 KFLNTCLLILYNKENENESICLKAC-IRGDTRYAFVEFRSLQDTSNCMLLNGIYFYSNNL 330
Query: 123 KIRRPHDY 130
+I RP +
Sbjct: 331 RIGRPKTF 338
>gi|255088499|ref|XP_002506172.1| predicted protein [Micromonas sp. RCC299]
gi|226521443|gb|ACO67430.1| predicted protein [Micromonas sp. RCC299]
Length = 628
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 28/164 (17%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLA----------------QAAGNPVL 85
T+ ARR+++GN+ GV +E ++ LS A +A G V+
Sbjct: 244 TKPARRVHIGNVNAGVKAEEFARVLETRIRTLSPEAVPWHYPLDKRGRVDERRAPGTRVI 303
Query: 86 ACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP--TPGVTDNAAV- 142
DK F FLE ++++ +A +G+ G + RRP DY P P V D +
Sbjct: 304 EHLYLNDKGFGFLETTALEDVPAILALNGVRVNGGVTRFRRPKDYDPDNNPLVRDGSYRD 363
Query: 143 ---AVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQL 183
V V+S V DSP K+F+GG+ E +A+ L+ +++
Sbjct: 364 VFQRVFTAVLSDEVVDSPTKVFVGGV-----EPRALTKLDLLEI 402
>gi|71028054|ref|XP_763670.1| U2 small nuclear ribonucleoprotein, auxiliary factor, large subunit
[Theileria parva strain Muguga]
gi|68350624|gb|EAN31387.1| U2 small nuclear ribonucleoprotein, auxiliary factor, large
subunit, putative [Theileria parva]
Length = 380
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP 83
E TV+ A RQ +RLYVGN+P G ++++FFN + +A GN
Sbjct: 34 EDTVSLTELKAKTSEEEAKKRQ-KRLYVGNLPSGTKLQDVVDFFNGAL----MAMVPGNT 88
Query: 84 -------VLACQI-NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
V +I N D+ + FLEF++ + A DGI G SLK+RRP D+
Sbjct: 89 IDPRDPLVTKTEIYNPDQGYCFLEFKTPELADLAFKLDGITCNGYSLKLRRPLDF 143
>gi|71027151|ref|XP_763219.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350172|gb|EAN30936.1| hypothetical protein TP03_0201 [Theileria parva]
Length = 509
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
++ R +Y+GNIP + +M+ NQ + GNP L I+ D ++AF+E R+
Sbjct: 100 SKAFREIYIGNIPPVGDIEILMDIINQALISVNGTSMPGNPCLKGWISSDGHYAFIELRT 159
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQ-------PTPGV 136
++E + M G+N G ++K+ RP + P+P V
Sbjct: 160 MEEASNCMQLTGLNIMGHNIKVNRPKTFDADVFSKAPSPTV 200
>gi|84996015|ref|XP_952729.1| splicing factor [Theileria annulata strain Ankara]
gi|65303726|emb|CAI76103.1| splicing factor, putative [Theileria annulata]
Length = 380
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP 83
E TV+ A RQ +RLYVGN+P G ++++FFN + +A GN
Sbjct: 34 EDTVSLTELKAKTSEEEARKRQ-KRLYVGNLPSGTKLQDVVDFFNGAL----MAMVPGNT 88
Query: 84 -------VLACQI-NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
V +I N D+ + FLEF++ + DGI G SLKIRRP D+
Sbjct: 89 MDPRDPLVTKTEIYNPDQGYCFLEFKTPELADLGFKLDGITCNGYSLKIRRPLDF 143
>gi|159471948|ref|XP_001694118.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
gi|158277285|gb|EDP03054.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
Length = 446
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 40 STITRQARRLYVGNIPFGV-TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN---F 95
+T R++R +YVGN+ GV T D + E FN + A PV+ +NLD + F
Sbjct: 119 ATADRKSREIYVGNLAIGVVTADMLKELFNTILANQVTDPANSPPVV--NVNLDPSAGRF 176
Query: 96 AFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
AF+EFR+ + T A+ D + G+ + I RP Y
Sbjct: 177 AFIEFRTRELTDAAIQLDKLELCGRQMNIGRPKGY 211
>gi|294878000|ref|XP_002768233.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239870430|gb|EER00951.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 638
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG 75
+P V+ +T+ A A + I AR LY+G IP G++ +++ N + G
Sbjct: 150 LPQTVVSSSSTIKEAFNATLAAERQKI---ARELYIGQIPPGISAAHLIDVLNDSLMNMG 206
Query: 76 LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMA-FDGINFK--GQSLKIRRPHDYQ- 131
G P++ + D FAF+EFR+ +E + A+ +G K G S+K+ RP Y
Sbjct: 207 ANAMPGRPIVHGWLGGDGLFAFVEFRTAEEASIALERLNGHQLKSYGVSIKVGRPKGYMG 266
Query: 132 PTPGVTDNA-----------AVAVPAGVISTVVPDSPHKIFIGGLP 166
P P + NA + A+P G+ + V ++ + G P
Sbjct: 267 PAPEDSVNAYTAGGNTASSSSSAIPGGISAAEVASDTSRLCLIGFP 312
>gi|302849650|ref|XP_002956354.1| hypothetical protein VOLCADRAFT_107190 [Volvox carteri f.
nagariensis]
gi|300258260|gb|EFJ42498.1| hypothetical protein VOLCADRAFT_107190 [Volvox carteri f.
nagariensis]
Length = 486
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 44 RQARRLYVGNIPFGV-TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
R+AR +YVGN+ GV T D + E FN + A PV+ ++ FAF+EFR+
Sbjct: 116 RKAREIYVGNLAIGVVTSDMLRELFNTILANQVPDPANAPPVVNVNLDSAGRFAFVEFRT 175
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ T A+ D + G+ + I RP Y
Sbjct: 176 RELTDAAIQLDKLELCGRQMNIGRPKGY 203
>gi|403362995|gb|EJY81233.1| hypothetical protein OXYTRI_21372 [Oxytricha trifallax]
Length = 411
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+ R+LYVGN+P +T +++E N + + L G P+L+ I+ D ++AF+EFR+I
Sbjct: 70 KHERQLYVGNLPPTITHQKLVELLNIAVCVMKLNVKPGQPILSAWISQDGHYAFVEFRTI 129
Query: 104 DETTQAMAFDGINFKGQSLKI 124
+E + I +G LK+
Sbjct: 130 EECMNGHQLNQIAIQGHPLKV 150
>gi|299473654|emb|CBN78048.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 259
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 32 AAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL 91
A + ++ ++ T+ + ++VGNIP + E+ + GL + NP+L+ I +
Sbjct: 26 AEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPP-NPILS--IRM 82
Query: 92 DKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
+ FAFLE R+ +E T A+ DGI F G +L + RP Y+
Sbjct: 83 NARFAFLEMRTAEEATAALNLDGIPFGGAALSVGRPKKYE 122
>gi|303274813|ref|XP_003056721.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461073|gb|EEH58366.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 709
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 24/147 (16%)
Query: 43 TRQARRLYVGNIPFGV----TEDEMMEFFNQQMHLSGLAQAAG-------NPVLACQINL 91
T+ +RR+YV N+ + +DE+ + + + ++G A G +P L +
Sbjct: 284 TKNSRRVYVHNLNTAIIGVDAKDELGKTLHDAVMVAGAAPWHGVDGTEKLHPKLDAPTGV 343
Query: 92 -------DKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY--QPTPGVTDNAAV 142
DK ++F+E ++++ +A DGI +G LKIRRP DY P V D
Sbjct: 344 VEKVFISDKGYSFVEGTAVEDACALLALDGIVVRGNLLKIRRPKDYVASENPLVVDGTMK 403
Query: 143 AVPA----GVISTVVPDSPHKIFIGGL 165
V +I VPD+ KIF+G L
Sbjct: 404 DVMKRTFEKIIRPSVPDTNTKIFLGNL 430
>gi|209878476|ref|XP_002140679.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556285|gb|EEA06330.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 577
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R +YVGN+P G+ ++EF NQ + + GNP ++ I+ D +AF E RS++E
Sbjct: 183 REVYVGNLPSGIGTTTLLEFMNQFLIKNCNITTPGNPFVSAWISSDGKYAFCECRSMEEA 242
Query: 107 TQAMAFDG-INFKGQSLKIRRP 127
A+ + IN G L+I RP
Sbjct: 243 NMALQLNNTINLNGNILRIGRP 264
>gi|294905728|ref|XP_002777665.1| Splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239885556|gb|EER09481.1| Splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 680
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG 75
+P V+ +T+ A A + I AR LY+G IP G++ E+++ N + G
Sbjct: 214 LPQTVVSSSSTIKEAFNATLAAERQKI---ARELYIGQIPPGISAAELIDVLNDGLMNMG 270
Query: 76 LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMA-FDGINFK--GQSLKIRRPHDYQP 132
G P++ + D FAF+EFR+ +E + A+ +G K G S+K+ RP Y
Sbjct: 271 ANAMPGRPIVHGWLGGDGLFAFVEFRTPEEASIALERLNGHQLKSYGVSIKVGRPKGYM- 329
Query: 133 TPGVTDNAAVAVPAGVIST 151
P D++ A AG +T
Sbjct: 330 GPAAPDDSVNAYTAGHAAT 348
>gi|298713809|emb|CBJ27181.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1141
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R L+VG +P GV+ ++ +F N M +A +AGNPV+ + D NFAF+E R+ +E
Sbjct: 749 RELHVGGLPHGVSGVQLQDFLNAAMQYLKIATSAGNPVIRIAMGPDGTNFAFIELRTEEE 808
Query: 106 TTQAMA-FDGINFKGQSLKIRRPH-----DYQPTPGVTDNAAVAV--------------- 144
T + GI LK RP P +++ + V
Sbjct: 809 TNATLGRMSGIQCGTGHLKFGRPKAHAAGATAVAPKKEESSVLMVMNLPDSLTDDHVREL 868
Query: 145 --PAGVIS--TVVPDSPHKIFIGGLPNYL---NEDQAIAGLNGMQLGDKKLIVQRASVGA 197
P G + ++ DS K + Y N A++GL+G+ +G KL+VQR V A
Sbjct: 869 LSPFGELKKFNLLKDSSGKSKGTAVFEYTDMENGQLALSGLSGLPVGKGKLMVQR--VPA 926
Query: 198 KNASGQQAPVQIQ 210
A+ PV+++
Sbjct: 927 MMAATLLKPVKVK 939
>gi|255086091|ref|XP_002509012.1| predicted protein [Micromonas sp. RCC299]
gi|226524290|gb|ACO70270.1| predicted protein [Micromonas sp. RCC299]
Length = 468
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Query: 44 RQARRLYVGNIPFGVTEDEMM-EFFNQQMHLSGLAQA------AGNPVLACQINLDKNFA 96
++ R +YVGN+ GVT E++ + FN M AQA G PV+ ++ + F
Sbjct: 209 KKQREIYVGNLMAGVTTIEVLKDLFNALM-----AQALPHCVEHGEPVINVNMDASQKFG 263
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-QPTPG 135
F+EFR+ + T A+ D ++ G+ + I RP Y +P PG
Sbjct: 264 FVEFRTEEIATCALNLDKMDVAGRQMNIGRPKGYVEPPPG 303
>gi|156094523|ref|XP_001613298.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802172|gb|EDL43571.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 1050
Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 37/130 (28%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHL-------------------------- 73
+T + AR LYVGNIP + E+++F N+ + +
Sbjct: 544 ATAEKTARELYVGNIPQHIEVQEIVKFLNKCLLILYNKDSGSELGEERENAPEEQERERD 603
Query: 74 -SGLAQAAGNPVLACQ---------INLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 123
G +Q G Q I D ++AF+EFR++ +T+ M +GINF G +L+
Sbjct: 604 HPGQSQGQGQNAAQSQSEDICLKACIRGDTHYAFVEFRTLQDTSNCMLLNGINFYGNNLR 663
Query: 124 IRRPHDYQPT 133
I RP + PT
Sbjct: 664 IGRPKTF-PT 672
>gi|167526710|ref|XP_001747688.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773792|gb|EDQ87428.1| predicted protein [Monosiga brevicollis MX1]
Length = 359
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 44 RQARRLYVGNIPFGV-TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
R+ R LY+GN+ GV TE + EF N + + PV+ ++ + FAF+EFR+
Sbjct: 174 RKQRELYIGNLLTGVVTEPVLREFLNAGLSIVCATPETTPPVVKVDMSNEGRFAFVEFRT 233
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDY 130
+ A+ D + G+ + + RP Y
Sbjct: 234 AELANAALCLDKFDLMGRCINVGRPKGY 261
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------N 94
+++R+A +LY+GN+P+ +T ++ E F + H V++ Q+ DK
Sbjct: 109 SVSREAGKLYIGNLPYAMTSSQLSEVFAEAGH-----------VVSVQVIYDKVTDRSRG 157
Query: 95 FAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
FAF+ +++E +A+ FDG G+++++ P P G + + + V
Sbjct: 158 FAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPE--VPRGGEKEVMGPRIRSSYNKFV- 214
Query: 154 PDSPHKIFIGGL 165
DSPHKI+ G L
Sbjct: 215 -DSPHKIYAGNL 225
>gi|255080772|ref|XP_002503959.1| predicted protein [Micromonas sp. RCC299]
gi|226519226|gb|ACO65217.1| predicted protein [Micromonas sp. RCC299]
Length = 332
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 44 RQARRLYVGNIPFGVTEDE-MMEFFNQQMHLSGLAQAAGNP----VLACQINLDKNFAFL 98
R AR +YVGN+ GV E + +FF+ M +A + NP V+ +++ D FAF+
Sbjct: 94 RLAREVYVGNLLVGVVNAESLRQFFDSSM---AVAFPSDNPFVKPVIEVRMSHDLKFAFV 150
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA 141
E R+ + T A+ +G N G+++ I RP Y + V AA
Sbjct: 151 ELRTEEMATAALQLNGTNLCGRAMVIARPSGYVDSIAVAQLAA 193
>gi|340382048|ref|XP_003389533.1| PREDICTED: paraspeckle component 1-like [Amphimedon queenslandica]
Length = 428
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 12/79 (15%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
R+Y+GN+P G+TE+E+ME F+ +S + + +KNF F D+
Sbjct: 80 RVYIGNLPRGMTEEELMELFSPHGEVSRVY-----------LEKEKNFGFARMAYRDQAM 128
Query: 108 QAM-AFDGINFKGQSLKIR 125
+A+ + +GIN KG+ L++R
Sbjct: 129 KAISSLNGINLKGRELRVR 147
>gi|428168725|gb|EKX37666.1| hypothetical protein GUITHDRAFT_116143 [Guillardia theta CCMP2712]
Length = 571
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQ-------------AAGNPVLACQIN 90
++A R+ V N+P G+++ ++ EF N M SG A + V +N
Sbjct: 108 KKASRIQVSNLPDGISDRKVREFMNGAMKSSGNEDIDDWDCGDGDHGLAEEDCVTDVYVN 167
Query: 91 LDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKIRRPHDY 130
+ FAF++ RS +E T + DG+ GQ LKI RP D+
Sbjct: 168 SNSRFAFVQLRSPEEATSCIINLDGLLMNGQELKIARPQDF 208
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEM----MEFFNQQMHLSGLAQAAGNPVLACQINLDKN 94
G IT +ARR+ NIP +DEM M F N S L G ++ +I DK
Sbjct: 290 GMKITMRARRVKFTNIP---NDDEMHAGFMSFLNALFEASKLNIKNGPAIINAEILPDKT 346
Query: 95 FAFLEFRSIDETTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVP-AGVISTV 152
A +EFR++ E A GI + LK+ Y+P ++D V G + TV
Sbjct: 347 SAIVEFRTVKEALSATQNLIGIQYGDNHLKVSFAEGYKP---LSDEETWKVMGTGYLGTV 403
Query: 153 V 153
+
Sbjct: 404 M 404
>gi|294944763|ref|XP_002784418.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897452|gb|EER16214.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 384
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 44 RQARRLYVGNIPFGVTEDEMM-EFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
R+ R LYVGN+ GV +++ E F L A G PVL +I D FAF+EF+
Sbjct: 192 RKQRELYVGNLAIGVVTPQVLHELFEPACKVLPDYDPALGPPVLQAEIRGDGRFAFVEFQ 251
Query: 102 SIDETTQAMA-FDGINFKGQSLKIRRPHDY 130
+ T A++ F+G+ G+ L + RP +
Sbjct: 252 NDRLATAALSIFNGMEVLGRRLIVSRPQGF 281
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 39 GSTITRQARRLYVGNIPFG-VTEDEMMEFFN---------QQMHLSGLAQAAGNPVLACQ 88
G+ ++A+ LYVGN+ G + + FFN QQ + + L A V +
Sbjct: 60 GAGANKKAKELYVGNLAQGQANQANIRAFFNNALSALPEYQQKYAALLPTGA---VREVR 116
Query: 89 INLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
++ + +AF+EF S + + D F G+ +KI RP
Sbjct: 117 MSAEGMYAFVEFASEEIAVTCLELDKAEFLGRPMKIGRP 155
>gi|294950371|ref|XP_002786596.1| Splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239900888|gb|EER18392.1| Splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 467
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 43 TRQARRLYVGNIPFGV-TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEF 100
+R+ R LYVGN+ GV T + E F L A G PVL I D FAF+EF
Sbjct: 277 SRKQRELYVGNLAIGVVTAQVLHELFEPACKVLPDYDPALGPPVLQADIRGDGRFAFVEF 336
Query: 101 RSIDETTQAMA-FDGINFKGQSLKIRRPHDY 130
++ T A++ F+G+ G+ L + RP +
Sbjct: 337 QNDRLATAALSIFNGMEVLGRRLIVSRPQGF 367
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 39 GSTITRQARRLYVGNIPFG-VTEDEMMEFFN---------QQMHLSGLAQAAGNPVLACQ 88
G+ ++A+ LYVGN+ G T+ + FFN QQ + + L A V +
Sbjct: 146 GAGANKKAKELYVGNLAQGQATQANIRAFFNNALSALPEYQQKYAALLPTGA---VREVR 202
Query: 89 INLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
++ + +AF+E S + + D F G+ LKI RP
Sbjct: 203 MSAEGMYAFVEVASEEIAVTCLELDKAEFLGRPLKIGRP 241
>gi|118376546|ref|XP_001021455.1| hypothetical protein TTHERM_00318730 [Tetrahymena thermophila]
gi|89303222|gb|EAS01210.1| hypothetical protein TTHERM_00318730 [Tetrahymena thermophila
SB210]
Length = 459
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R+LY+GNIP G+ + N + + Q G+ ++ I+ + N+ F EFR+ DE
Sbjct: 203 RKLYIGNIPPGLQPVKCQLMINSALKQLKVNQEPGDSCVSIWISPEGNYGFAEFRTPDEA 262
Query: 107 TQAM-AFDGINFKGQSLKIRRPHDY 130
T+A+ A + GQ LK+ RP Y
Sbjct: 263 TKALNALVNVTLLGQPLKVGRPAQY 287
>gi|399216014|emb|CCF72702.1| unnamed protein product [Babesia microti strain RI]
Length = 487
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-DKNFAFLEFR 101
TR +R+L + N P + + ++E+FN M G GNP + + N DK +E R
Sbjct: 131 TRFSRQLEISNTPPNIEVEVIIEYFNMAMLAVGGNCLPGNPAIRGKHNSNDKTSITIEMR 190
Query: 102 SIDETTQAMAFDGINFKGQSLKIRR 126
+++ET+ A+ +G+N G+SL I R
Sbjct: 191 TLEETSNALQLNGLNLMGKSLSITR 215
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
+ +LYVGN+PF + + + + F++ SG+ + + + FAF+ +++
Sbjct: 157 EGTKLYVGNLPFDIDSEGLAKMFDE----SGVVEMV-EVIYDRSSGRSRGFAFVTMSTVE 211
Query: 105 ETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
E A+ F+G G+SL++ P P + + + A V DSPHK+++G
Sbjct: 212 EAEAAIKKFNGFEIDGRSLRVNFPE----VPRLQNGRSPARSPSNFGGFV-DSPHKVYVG 266
Query: 164 GLPNYLNEDQAIAGLNG 180
L + + LNG
Sbjct: 267 NLAWSVTSETLREALNG 283
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
+ +LYVGN+PF + + + + F++ SG+ + + + FAF+ +++
Sbjct: 165 EGTKLYVGNLPFDIDSEGLAKMFDE----SGVVEMV-EVIYDRSSGRSRGFAFVTMSTVE 219
Query: 105 ETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
E A+ F+G G+SL++ P P + + + A V DSPHK+++G
Sbjct: 220 EAEAAIKKFNGFEIDGRSLRVNFPE----VPRLQNGRSPARSPSNFGGFV-DSPHKVYVG 274
Query: 164 GLPNYLNEDQAIAGLNG 180
L + + LNG
Sbjct: 275 NLAWSVTSETLREALNG 291
>gi|145502691|ref|XP_001437323.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404473|emb|CAK69926.1| unnamed protein product [Paramecium tetraurelia]
Length = 438
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 47 RRLYVGNIPFGVTEDE----------MMEFFNQQMHLSGLAQAAGNPVLACQINLDK--- 93
R+LYVGN+P E + +F NQ + G++ + C I+ +
Sbjct: 150 RKLYVGNLPPNSQPKEVEMVMDILNQLQDFLNQTLLKMGVSSEHAGSICNCWIDSNGQIL 209
Query: 94 ------NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY 130
+F F+EFRS +E TQ + FKG LKI RP +
Sbjct: 210 RLIYLGHFGFIEFRSPEEATQGFILKDVIFKGHQLKIGRPKSF 252
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 26/128 (20%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFL 98
Q+RRL+VGN+PF ++ ++ + F + AGN V++ +I N + FAF+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGE----------AGN-VVSVEILYDDITNRSRGFAFV 154
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSP 157
++++ +A+ FDG G+++K+ P P G V G DSP
Sbjct: 155 TMGNVEDAEEAIRMFDGTTVGGRAIKVNFPE--VPIVGKR------VQMGSTYRGYVDSP 206
Query: 158 HKIFIGGL 165
HKI+ G L
Sbjct: 207 HKIYAGNL 214
>gi|427798071|gb|JAA64487.1| Putative splicing factor arginine/serine-rich, partial
[Rhipicephalus pulchellus]
Length = 381
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R +YVGN+ T +++++FF+Q + + A G + FAF+EF
Sbjct: 75 RTVYVGNLDSSATTEQLLKFFSQMGEVKYVRMAGGE-------SQPTRFAFVEFTEQSSV 127
Query: 107 TQAMAFDGINFKGQSLKI 124
+A+ F+GI F G+SLKI
Sbjct: 128 GRALQFNGIEFCGRSLKI 145
>gi|237830635|ref|XP_002364615.1| splicing factor U2AF 65 kDa subunit, putative [Toxoplasma gondii
ME49]
gi|211962279|gb|EEA97474.1| splicing factor U2AF 65 kDa subunit, putative [Toxoplasma gondii
ME49]
gi|221487696|gb|EEE25928.1| splicing factor U2AF 65 kDa subunit, putative [Toxoplasma gondii
GT1]
gi|221507490|gb|EEE33094.1| splicing factor U2AF 65 kDa subunit, putative [Toxoplasma gondii
VEG]
Length = 414
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 35 VPVVGSTITRQARRLYVGNIPFGV---TEDEMMEFFNQQMHL-SGLAQAAGNPVLACQIN 90
+P + S+I +GN+P + TED+ M L S A A P+L
Sbjct: 1 MPFIASSI--------IGNLPLQLEEATEDDFKRHMWHVMRLNSSCADPAVCPILHVWFA 52
Query: 91 LDK--NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
D+ N+ F+E S++E A+ DG+ + G ++I RP D++ + G
Sbjct: 53 RDRGGNYGFVEMASVEEAHAALRLDGMLWHGLPIRINRPTDWKNSVG 99
>gi|347734520|ref|ZP_08867565.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
gi|347516846|gb|EGY24046.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
Length = 88
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLE 99
++ LYVGN+PF +EDE+ + F+Q VL+ ++ D+ F F+E
Sbjct: 2 SKSLYVGNLPFSASEDEIRDLFSQHGQ-----------VLSVKLISDRETGRPRGFGFVE 50
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
+ D ++ A +G +F G++LK+ P P
Sbjct: 51 MEAADASSAVEALNGYSFGGRALKVNEAQPRAPRP 85
>gi|302803765|ref|XP_002983635.1| hypothetical protein SELMODRAFT_234317 [Selaginella moellendorffii]
gi|300148472|gb|EFJ15131.1| hypothetical protein SELMODRAFT_234317 [Selaginella moellendorffii]
Length = 573
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 40/143 (27%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
+++ L+V NIPF VT++++ ++F + G+ A G+ N K FA +EF
Sbjct: 314 ESKTLFVRNIPFSVTDEDLAQYFEDAGEVVGVRIAQGD-------NGPKGFAHVEF---- 362
Query: 105 ETTQAMAFDGINFKGQSLKIRR---------------PHDYQPTPGVTDNAAVAVPAGVI 149
+T+A A +N GQ + RR P +P+PG N
Sbjct: 363 -STEAAAQKALNKSGQDMGGRRIYCDLANPRGTPASGPKRDRPSPGFNGNRKT------- 414
Query: 150 STVVPDSPHKIFIGGLPNYLNED 172
S + +F+ G Y ED
Sbjct: 415 ------SGNTVFVKGFDKYQEED 431
>gi|302817804|ref|XP_002990577.1| hypothetical protein SELMODRAFT_448081 [Selaginella moellendorffii]
gi|300141745|gb|EFJ08454.1| hypothetical protein SELMODRAFT_448081 [Selaginella moellendorffii]
Length = 602
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 40/143 (27%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
+++ L+V NIPF VT++++ ++F + G+ A G+ N K FA +EF
Sbjct: 343 ESKTLFVRNIPFSVTDEDLAQYFEDAGEVVGVRIAQGD-------NGPKGFAHVEF---- 391
Query: 105 ETTQAMAFDGINFKGQSLKIRR---------------PHDYQPTPGVTDNAAVAVPAGVI 149
+T+A A +N GQ + RR P +P+PG N
Sbjct: 392 -STEAAAQKALNKSGQDMGGRRIYCDLANPRGTPASGPKRDRPSPGFNGNRKT------- 443
Query: 150 STVVPDSPHKIFIGGLPNYLNED 172
S + +F+ G Y ED
Sbjct: 444 ------SGNTVFVKGFDKYQEED 460
>gi|218885158|ref|YP_002434479.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756112|gb|ACL07011.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 88
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLE 99
++ LYVGN+PF +EDE+ + F+Q VL+ ++ D+ F F+E
Sbjct: 2 SKSLYVGNLPFSASEDEIRDLFSQHGQ-----------VLSVKLISDRETGRPRGFGFVE 50
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
+ D + A +G +F G++LK+ P P
Sbjct: 51 MEAADANSAVEALNGYSFGGRALKVNEAQPRAPRP 85
>gi|384253302|gb|EIE26777.1| hypothetical protein COCSUDRAFT_64653 [Coccomyxa subellipsoidea
C-169]
Length = 472
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMM-EFFNQQM-HLSGLAQAAGNPVLACQINLDKNFA 96
G+ ++ R +YVGN+ G D M+ E FN + HL Q PV+ ++ F
Sbjct: 94 GAASGKKQREVYVGNLTIGAVTDVMLRELFNGALAHLMPDPQL-NPPVINVGMDPSGRFG 152
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
F+E R+ + T MA D + G+++ + RP Y P
Sbjct: 153 FVEMRTEELATSGMALDKVELCGRNINVGRPKGYVEPP 190
>gi|294944761|ref|XP_002784417.1| hypothetical protein Pmar_PMAR003676 [Perkinsus marinus ATCC 50983]
gi|239897451|gb|EER16213.1| hypothetical protein Pmar_PMAR003676 [Perkinsus marinus ATCC 50983]
Length = 872
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 44 RQARRLYVGNIPFGVTEDEMM-EFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
R+ R LYVGN+ GV +++ E F L A G PVL +I D FAF+EF+
Sbjct: 604 RKQRELYVGNLAIGVVTPQVLHELFEPACKVLPDYDPALGPPVLQAEIRGDGRFAFVEFQ 663
Query: 102 SIDETTQAMA-FDGINFKGQSLKIRRPHDY 130
+ T A++ F+G+ G+ L + RP +
Sbjct: 664 NDRLATAALSIFNGMEVLGRRLIVSRPQGF 693
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 27/160 (16%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFL 98
+A RLYVGN+P+ +T ++ + FN+ AG+ V++ +I D + FAF+
Sbjct: 101 EASRLYVGNLPYSMTSSQLGDVFNE----------AGS-VISVEIVYDRVTDRSRGFAFV 149
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSP 157
S+ E +A+ FDG G+++K+ P P + A + DSP
Sbjct: 150 TMGSVQEAKEAIRMFDGSQVGGRTVKVNFPE----VPRGGERAVMGPKIRSSYRGFVDSP 205
Query: 158 HKIFIGGLPNYLNED---QAIAGLNGMQLGDKKLIVQRAS 194
+KI+ G L L + A A G+ LG K+I +R S
Sbjct: 206 YKIYAGNLSWRLTSEGLRDAFADHPGL-LG-AKVIYERES 243
>gi|342320997|gb|EGU12935.1| Rnp24p [Rhodotorula glutinis ATCC 204091]
Length = 581
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA--GNPVLACQINLDKN 94
+VG+T +R A ++VGN+ F E++++F ++ GL + P Q ++
Sbjct: 141 LVGNTPSRSAHGVWVGNLNFATHPRELLQWFKER----GLEEVTRINMPGGKRQHENNRG 196
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY--QPTPGV-TDNAAVAVPAGVIST 151
FA+L+F S + T A+ + G+ L I+ DY +P P T +A AG +
Sbjct: 197 FAYLDFPSATDVTIAVGLSEQHLDGRKLLIKSSTDYTGRPAPAASTSTSAAGAGAGTVKD 256
Query: 152 VV 153
V+
Sbjct: 257 VL 258
>gi|327398778|ref|YP_004339647.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
gi|327181407|gb|AEA33588.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
Length = 86
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
LYVGN+P+ TEDE+ E F + +S + + + + F F+E D
Sbjct: 5 LYVGNLPYSTTEDELKELFGEYGEVS-----STKIITDRETGRSRGFGFVEMSDDDAQKA 59
Query: 109 AMAFDGINFKGQSLKIRRPHDYQP 132
+ +G+NF G++LK+ + +P
Sbjct: 60 IDSLNGVNFGGRNLKVNEARERKP 83
>gi|189521749|ref|XP_001923043.1| PREDICTED: polyadenylate-binding protein 2-B-like isoform 1 [Danio
rerio]
Length = 192
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKNFAF 97
I R +YVGN+ +G T DE+ +FN H++ + + G+P K FA+
Sbjct: 61 IDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHP---------KGFAY 111
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKI 124
+EF + AMA D F+G+ +K+
Sbjct: 112 IEFSDRESVRTAMALDETLFRGRVIKV 138
>gi|403367221|gb|EJY83425.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 543
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 72/229 (31%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
R+L + N+P +TE+++M +F + + NP+++ D F LEFR DE
Sbjct: 188 KRKLVIQNLPPDITEEDVMNYFFTVISSFSKVEYQKNPIMSVIKYKDLGFVTLEFRKRDE 247
Query: 106 TTQAMAFDGINFK-GQSLKIRRPHDY------------QPTPGVTDNAAVAV-------- 144
+ DG ++ G ++I R + P +T V++
Sbjct: 248 GEICLTLDGTEYRTGYKMRIMRVKRFIDDWNADIDKGKNPIEAMTRGKGVSLFSTGNNQF 307
Query: 145 --------PAGVISTVVPDSPHKIFIGGLPN----------------------------- 167
AG V + +++++G +PN
Sbjct: 308 KEPAKPDQKAGK-KEKVEEVDNRLYMGNIPNSMKDEDVKKMCESFGRLKAFNLVKDPMNP 366
Query: 168 ----------YLNE---DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ 203
Y++E D+AI LNG+ +KKL VQ+AS K + Q
Sbjct: 367 DLNKGYAFFEYVDERSIDKAIKSLNGLDFKEKKLKVQKASAHQKTSQTQ 415
>gi|412987810|emb|CCO19206.1| predicted protein [Bathycoccus prasinos]
Length = 533
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 40 STITRQARRLYVGNIPFGV-TEDEMMEFFNQQMHLSG----LAQAAGNPVLACQINLDKN 94
+ I R+ R +YVGN+ GV T + + + FN + + AGNPV+ ++ +
Sbjct: 241 NEILRKRREVYVGNLIQGVVTPNILADVFNAILKKVAPKLCEREVAGNPVVNVIMDSQGS 300
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
F F+E R + A+ FD ++ G+ + + RP Y P V D+ P V+ ++V
Sbjct: 301 FGFVELRCFEMAQIALRFDKVDVCGRPMNVGRPKGYIEDPRVGDDC----PQEVVDSMV 355
>gi|119188839|ref|XP_001245026.1| hypothetical protein CIMG_04467 [Coccidioides immitis RS]
Length = 377
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 36/177 (20%)
Query: 17 PANVIIPETTVAAAAA---AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ-QMH 72
P N P + +A A P V ++ + RRLYVGN+P+ ++++ FN H
Sbjct: 81 PTNAARPSNRGSENSANVLVAAPDVPASFA-EGRRLYVGNMPYMAKKEDVEALFNSATKH 139
Query: 73 LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKIR------ 125
G Q ++ +F F+E S ++ T AM DG + G+ +KI+
Sbjct: 140 GEGYYQ------------INPSFCFVELASKEQATHAMEELDGRDMLGRPVKIKPGIPKS 187
Query: 126 -RP----------HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE 171
+P D +P P + D + V D ++F+GGLP N+
Sbjct: 188 PKPQFGRRDPSSKEDERPRPFIFDRWGRDDASSHWYGVA-DEGRRLFVGGLPRMPNQ 243
>gi|303323535|ref|XP_003071759.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111461|gb|EER29614.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320035098|gb|EFW17040.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 384
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 17 PANVIIPETTVAAAAA---AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ-QMH 72
P N P + +A A P V ++ + RRLYVGN+P+ ++++ FN H
Sbjct: 74 PTNAARPSNRGSENSANVLVAAPDVPASFA-EGRRLYVGNMPYMAKKEDVEALFNSATKH 132
Query: 73 LSGLAQAAGNPVLACQINLDK------NFAFLEFRSIDETTQAMA-FDGINFKGQSLKIR 125
G Q + I++D +F F+E S ++ T AM DG + G+ +KI+
Sbjct: 133 GEGYYQ-----IERIDISIDPFTGRNPSFCFVELASKEQATHAMEELDGRDMLGRPVKIK 187
Query: 126 -------RP----------HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNY 168
+P D +P P + D + V D ++F+GGLP
Sbjct: 188 PGIPKSPKPQFGRRDPSSKEDERPRPFIFDRWGRDDASSHWYGVA-DEGRRLFVGGLPRM 246
Query: 169 LNE 171
N+
Sbjct: 247 PNQ 249
>gi|392867934|gb|EAS33652.2| ribonucleoprotein [Coccidioides immitis RS]
Length = 390
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 17 PANVIIPETTVAAAAA---AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ-QMH 72
P N P + +A A P V ++ + RRLYVGN+P+ ++++ FN H
Sbjct: 81 PTNAARPSNRGSENSANVLVAAPDVPASFA-EGRRLYVGNMPYMAKKEDVEALFNSATKH 139
Query: 73 LSGLAQAAGNPVLACQINLDK------NFAFLEFRSIDETTQAMA-FDGINFKGQSLKIR 125
G Q + I++D +F F+E S ++ T AM DG + G+ +KI+
Sbjct: 140 GEGYYQ-----IERIDISIDPFTGRNPSFCFVELASKEQATHAMEELDGRDMLGRPVKIK 194
Query: 126 -------RP----------HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNY 168
+P D +P P + D + V D ++F+GGLP
Sbjct: 195 PGIPKSPKPQFGRRDPSSKEDERPRPFIFDRWGRDDASSHWYGVA-DEGRRLFVGGLPRM 253
Query: 169 LNE 171
N+
Sbjct: 254 PNQ 256
>gi|198438310|ref|XP_002131910.1| PREDICTED: similar to Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (Poly(A)-binding protein II)
(PABII) (Polyadenylate-binding nuclear protein 1)
(Nuclear poly(A)-binding protein 1) [Ciona intestinalis]
Length = 225
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 29 AAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPV 84
A+A A P + + +R ++VGN+ +G T +E+ + F+ ++ + + +G+P
Sbjct: 83 ASATFAFPTIEEKVEADSRSVFVGNVDYGATAEELEQHFHGTGSINRVTILCDRYSGHP- 141
Query: 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
K FA++EF + A A DG F+G+ L++
Sbjct: 142 --------KGFAYVEFADTESVETATALDGTLFRGRQLQV 173
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEFR 101
RLYVGN+P+ +T E+ + F + AG V+ QI DK F F+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGE----------AGT-VVDVQIVYDKVTDRSRGFGFVTMG 165
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
SI+E +AM F+ G+++K+ P P +N + + DSPHK+
Sbjct: 166 SIEEAKEAMQMFNSSQIGGRTVKVNFPE----VPRGGENEVMRTKIRDNNRSYVDSPHKV 221
Query: 161 FIGGL 165
+ G L
Sbjct: 222 YAGNL 226
>gi|425781065|gb|EKV19047.1| Nucleolin protein Nsr1, putative [Penicillium digitatum PHI26]
Length = 537
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGL----AQAAGNPVLACQINLDKNFAFLEFRSID 104
L+VGN+PF TED + E F Q + G+ Q G P K F +++F SID
Sbjct: 388 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRP---------KGFGYVQFSSID 438
Query: 105 ETTQAM-AFDGINFKGQSLKI 124
E A A +G +G+++++
Sbjct: 439 EAKAAHAALNGHELEGRAIRL 459
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFL 98
+ RLYVGN+P+ +T E+ + F + AG V+ QI DK F F+
Sbjct: 106 EEWRLYVGNLPYTITSSELSQIFGE----------AGT-VVDVQIVYDKVTDRSRGFGFV 154
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSP 157
SI+E +AM F+ G+++K+ P P +N + + DSP
Sbjct: 155 TMGSIEEAKEAMQMFNSSQIGGRTVKVNFPE----VPRGGENEVMRTKIRDNNRSYVDSP 210
Query: 158 HKIFIGGL 165
HK++ G L
Sbjct: 211 HKVYAGNL 218
>gi|66362022|ref|XP_627975.1| cleavage stimulation factor subunit 2 that has a CSF1 like RRM
domain [Cryptosporidium parvum Iowa II]
gi|46227640|gb|EAK88575.1| cleavage stimulation factor subunit 2 that has a CSF1 like RRM
domain [Cryptosporidium parvum Iowa II]
Length = 304
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 18/81 (22%)
Query: 51 VGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRSID 104
VGN+PF TEDE+ E N +AG PVL+ +I DK+ F+F E+R I+
Sbjct: 6 VGNVPFDATEDELREVMN----------SAG-PVLSMRIVHDKDTGLSRGFSFCEYRDIE 54
Query: 105 ETTQAM-AFDGINFKGQSLKI 124
A+ + +G +G+S+++
Sbjct: 55 TCIMAIKSLNGYELRGRSIRV 75
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--FAFLEFRSIDE 105
RLYVGN+PF +T ++ E F + A N + D++ FAF+ S++E
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAE-------AGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 162
Query: 106 TTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV--VPDSPHKIFI 162
+A+ FDG G+++K+ P P G + + A + ST DSPHK+++
Sbjct: 163 AKEAIRLFDGSQVGGRTVKVNFPE--VPRGGERE----VMSAKIRSTYQGFVDSPHKLYV 216
Query: 163 GGL 165
L
Sbjct: 217 ANL 219
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEFR 101
RLYVGN+P+ +T E+ + F + AGN V+ QI DK F F+
Sbjct: 118 RLYVGNLPYTITSSELSQLFGE----------AGN-VVDVQIVYDKVTDRSRGFGFVTMG 166
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
+I+E +A+ F+ G+++K+ P P G + + S V DSPHKI
Sbjct: 167 TIEEAKEAIQMFNSSQIGGRTVKVNLPE--VPRGGEREVMRTKIRDNNRSYV--DSPHKI 222
Query: 161 FIGGL 165
+ G L
Sbjct: 223 YAGNL 227
>gi|292616346|ref|XP_002662984.1| PREDICTED: polyadenylate-binding protein 2-B-like [Danio rerio]
gi|292616348|ref|XP_002662985.1| PREDICTED: polyadenylate-binding protein 2-B-like [Danio rerio]
Length = 163
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKNFAF 97
I R +YVGN+ +G T DE+ +FN H++ + + G+P K FA+
Sbjct: 32 IDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHP---------KGFAY 82
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKI 124
+EF + AMA D F+G+ +K+
Sbjct: 83 IEFSDRESVRTAMALDETLFRGRVIKV 109
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 28 AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNP 83
+A AA G I+ ++ L+VGN+PF ED + +FFN+ + L Q +G P
Sbjct: 382 SARAAERARKHGDVISPESDTLFVGNLPFSADEDSVSKFFNKAAKVQSLRIPTDQESGRP 441
Query: 84 VLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIR--RPHD 129
K FA++ F S+++ +A +G + G+ +++ +P D
Sbjct: 442 ---------KGFAYVTFSSVEDAKKAFETLNGSDLDGRPVRLDYAKPRD 481
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+ A RLYVGN+P+ +T E+ E F + + A+ V + + FAF+ S
Sbjct: 104 SNDAGRLYVGNLPYSITNSELGELFGEAGTV-----ASVEIVYDRVTDRSRGFAFVTMGS 158
Query: 103 IDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPG---VTDNAAVAVPAGVISTVVPDSPH 158
+++ +A+ FDG G+++K+ P P G V + + G + DSPH
Sbjct: 159 VEDAKEAIRMFDGSQVGGRTVKVNFPE--VPKGGERLVMGSKILNSYRGFV-----DSPH 211
Query: 159 KIFIGGL 165
KI+ G L
Sbjct: 212 KIYAGNL 218
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRS 102
R+ +LYVGN+P+ +T E+ E F + + G V+ ++ + + F F+ S
Sbjct: 113 REEGKLYVGNLPYSMTSSELAEVFEEA------GRVFGAEVICDRVTDRSRGFGFVTMES 166
Query: 103 IDETTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
++E +A+ F+G G++L++ P P G + + +G + DS HKI+
Sbjct: 167 VEEAKEAIRMFNGSQVGGRTLRVNFPE--VPRGGEREVMEPRIRSGYKGFI--DSEHKIY 222
Query: 162 IGGL 165
G L
Sbjct: 223 AGNL 226
>gi|307108867|gb|EFN57106.1| hypothetical protein CHLNCDRAFT_143928 [Chlorella variabilis]
Length = 453
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 47 RRLYVGNIPFG-VTEDEMMEFFNQQMH--LSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R +YVGN+ G VT D + + FN M +A+ +PV+ ++ + +AF+E R+
Sbjct: 167 REVYVGNLTAGLVTADMLKQLFNSTMAAAFPDMAKPGYDPVVNVSVHTEGRYAFVELRTA 226
Query: 104 DETTQAMAFDG-INFKGQSLKIRRPHDY 130
D + ++ +G + G +L I RP Y
Sbjct: 227 DMASASLQLNGQVQLLGATLSIGRPSGY 254
>gi|302834772|ref|XP_002948948.1| hypothetical protein VOLCADRAFT_89331 [Volvox carteri f.
nagariensis]
gi|300265693|gb|EFJ49883.1| hypothetical protein VOLCADRAFT_89331 [Volvox carteri f.
nagariensis]
Length = 729
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 47 RRLYVGN-IPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
R LY+GN +P VT+ + + FN + + + PV+ ++ D +AF+EFR+ +
Sbjct: 230 RELYIGNLVPGAVTDVALRQLFNTTLVAAFPVTGSAEPVVNVNLHSDGRYAFVEFRTPEM 289
Query: 106 TTQAMAFDG-INFKGQSLKIRRPHDY 130
T A+A + + GQ++ + RP Y
Sbjct: 290 ATAALALNAQVQLLGQTISVGRPSGY 315
>gi|425783198|gb|EKV21057.1| Nucleolin protein Nsr1, putative [Penicillium digitatum Pd1]
Length = 467
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGL----AQAAGNPVLACQINLDKNFAFLEFRSID 104
L+VGN+PF TED + E F Q + G+ Q G P K F +++F SID
Sbjct: 318 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRP---------KGFGYVQFSSID 368
Query: 105 ETTQAM-AFDGINFKGQSLKI 124
E A A +G +G+++++
Sbjct: 369 EAKAAHAALNGHELEGRAIRL 389
>gi|336372226|gb|EGO00565.1| hypothetical protein SERLA73DRAFT_50777 [Serpula lacrymans var.
lacrymans S7.3]
Length = 683
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 34/199 (17%)
Query: 5 NEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMM 64
N++ N G Q+ NV IP + AA + + R +YVGN+P + DE++
Sbjct: 168 NQMGNFGQPRQLSLNVNIPSAPATYSPAALTAALSANSNATGRTVYVGNLPATASVDELL 227
Query: 65 EFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDG------INFK 118
+H P+ + ++ +K+ FL F +D +T A AF +
Sbjct: 228 NL----VHFG--------PLESIRVLPEKSCVFLSF--LDGST-AAAFHADATIKKLALH 272
Query: 119 GQSLKIRRPHDYQPTPGVTDNAAVAVPAGV-ISTVVPDSPHKIFIGGLPNYLNEDQAIAG 177
GQ LKI +P+P VPA V ++ ++ +++GGL L E+Q
Sbjct: 273 GQELKIGWG---KPSP---------VPAQVALAISQSNASRNVYLGGLDESLTEEQLRDD 320
Query: 178 LNGMQLGDKKLIVQRASVG 196
L+ L D+ IV+ ++G
Sbjct: 321 LSRFGLIDQVKIVRDKNIG 339
>gi|258566441|ref|XP_002583965.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907666|gb|EEP82067.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 372
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQ----------MHLSGLAQAAGNPVLACQINLDKNFAFL 98
+++GN+PF T+D++ +FF Q +HL ++G Q+ L+K FA++
Sbjct: 76 IWIGNLPFTATQDDLRKFFTTQGTFTPDEITRLHLP----SSGEKNNGRQV-LNKGFAYV 130
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPH 158
F + + +A+A G+++ I+ +DY P +D AV P+ +
Sbjct: 131 GFSTSEAVQRAVALSEKLLSGRAVLIKDANDYSGRPEKSD--AVEKPSNKTPS------R 182
Query: 159 KIFIGGL 165
KIF+G L
Sbjct: 183 KIFVGNL 189
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLE 99
AR+LYVGN+P VT DE+ + F AA V ++ DK F F+
Sbjct: 66 ARKLYVGNVPRTVTNDELRDMF-----------AAHGTVERAEVMYDKYTNRSRRFGFVT 114
Query: 100 FRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPH 158
+++E A+ A +G G+ +K+ + P + +A + P V DS +
Sbjct: 115 MSTVEEANAAVEALNGTEVGGRKIKVNVTESF--LPNIDRSAPESEP------VFVDSQY 166
Query: 159 KIFIGGL 165
K+++G L
Sbjct: 167 KVYVGNL 173
>gi|326482144|gb|EGE06154.1| pre-mRNA splicing factor [Trichophyton equinum CBS 127.97]
Length = 304
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR-SIDET 106
RLY+GN+P V + ++ E F H +G +I L + F F+E+ ++D
Sbjct: 8 RLYLGNLPRNVNKQDIEEHFGS--HGTG---------KITEIKLMQGFGFIEYEDAMDAK 56
Query: 107 TQAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
AF G +FKG+ L + R P +P PG + +A P I +++ I
Sbjct: 57 DVVPAFHGTDFKGERLTVQFARGPRRREPFPGPPERSAAPRPRRTI--------YRMQIT 108
Query: 164 GLPNYLNED 172
GLP +D
Sbjct: 109 GLPETSWQD 117
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--FAFLEFRSIDE 105
RLYVGN+PF +T ++ E F + A N + D++ FAF+ S++E
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAE-------AGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167
Query: 106 TTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+A+ FDG G+++K+ P P G + + + + V DSPHK+++
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPE--VPRGGEREVMSAKIRSTYQGFV--DSPHKLYVAN 223
Query: 165 L 165
L
Sbjct: 224 L 224
>gi|431838574|gb|ELK00506.1| Embryonic polyadenylate-binding protein 2 [Pteropus alecto]
Length = 308
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKNFAFLEFRS 102
R +YVGN+ +G T E+ +FN + + + +G+P K +A++EF S
Sbjct: 186 RSIYVGNVDYGGTAKELEAYFNHCGEVQRVTILCDKFSGHP---------KGYAYVEFAS 236
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAG 147
A+ D F+G+ +K+ PH+ +PG ++A P G
Sbjct: 237 ESSVQAAVELDESIFRGRVIKVHVPHE---SPGHLEDALHTPPPG 278
>gi|429328959|gb|AFZ80718.1| hypothetical protein BEWA_001250 [Babesia equi]
Length = 711
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 22/121 (18%)
Query: 55 PFGVTEDEMMEFFNQQ-MHLSGLAQAAGN-PVLACQI-NLDKNFAFLEFRSIDETTQAMA 111
P G+ ++++FFN M +S G PV+ +I N ++ + FLEF + +
Sbjct: 357 PLGIRLQDVVDFFNGALMTMSTSIDINGPMPVMKTEIFNQEQGYCFLEFTTAEYADLCYK 416
Query: 112 FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE 171
DGI G SLK+RRP D+ + D KIF+ +P +E
Sbjct: 417 LDGIQCNGYSLKLRRPIDFSSSMSSEDT-------------------KIFVQNIPESFSE 457
Query: 172 D 172
+
Sbjct: 458 E 458
>gi|358400636|gb|EHK49962.1| hypothetical protein TRIATDRAFT_51515, partial [Trichoderma
atroviride IMI 206040]
Length = 249
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 18 ANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA 77
AN + T A AA G T++ ++ L+VGN+PF V +D + EFFN+
Sbjct: 76 ANARSDDATPQARAADRAKKHGDTVSPESDTLFVGNLPFDVDQDTVTEFFNEVR------ 129
Query: 78 QAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM 110
PV++ ++ D K F ++ F SID+ +A
Sbjct: 130 -----PVVSVRLPTDPESGNLKGFGYVTFGSIDDAREAY 163
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--FAFLEFRSIDE 105
RLYVGN+PF +T ++ E F + A N + D++ FAF+ S++E
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAE-------AGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 156
Query: 106 TTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV--VPDSPHKIFI 162
+A+ FDG G+++K+ P P G + + A + ST DSPHK+++
Sbjct: 157 AKEAIRLFDGSQVGGRTVKVNFPE--VPRGGERE----VMSAKIRSTYQGFVDSPHKLYV 210
Query: 163 GGL 165
L
Sbjct: 211 ANL 213
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFR 101
+LYVGN+P+ +T E+ E F + AG V + ++ D + F F+
Sbjct: 114 KLYVGNLPYSMTSSELTEVFEE----------AGR-VFSAEVIYDRVTDRSRGFGFVTMG 162
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
S++E +A+ F+G F G+S+++ P P G + + +G + DS HKI
Sbjct: 163 SVEEAKKAIQMFNGTQFGGRSVRVNFPE--VPRGGEREVMGPRIQSGYKGFI--DSEHKI 218
Query: 161 FIGGL 165
+ G L
Sbjct: 219 YAGNL 223
>gi|358055682|dbj|GAA98027.1| hypothetical protein E5Q_04707 [Mixia osmundae IAM 14324]
Length = 443
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 26/131 (19%)
Query: 37 VVGSTITRQARR----LYVGNIPFGVTEDEMMEFFN-----QQMHLSGLAQAAGNPVLAC 87
VV S + A+R ++VGN+ + E ++ +FF+ ++HL P
Sbjct: 93 VVASEREQPAKRSGHGIWVGNMSYMTNESQLRQFFDVCGEITRIHL---------PEGKQ 143
Query: 88 QINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA------ 141
+ +++ FA+++F + + TT+A+A N G+ L I+ +++ P N A
Sbjct: 144 KYEVNRGFAYIDFETAEATTKAIAMSEQNLIGRKLLIKDASNFEGRPATPANKATEALLA 203
Query: 142 --VAVPAGVIS 150
V +PAG I+
Sbjct: 204 SGVPLPAGTIN 214
>gi|363744206|ref|XP_424756.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Gallus gallus]
Length = 621
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMME 65
G G IPA + P T A P++G S I R +YVGN+ T D+++E
Sbjct: 143 GTLGAIPAAALDPNIT-ALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 201
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FF Q + + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 202 FFKQVGEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|302791860|ref|XP_002977696.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
gi|300154399|gb|EFJ21034.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
Length = 298
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN---FAFL 98
++R +R +YVGN+P V E E+ + F++ P++ + L + F+
Sbjct: 1 MSRSSRTIYVGNLPGDVREREIDDLFHKY-----------GPIVDIDLKLPPRPPGYCFI 49
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSP 157
EF + + A+ DG NF G L++ H + P ++ G +S S
Sbjct: 50 EFEDVRDAEDAIRGRDGYNFDGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVSRR---SE 106
Query: 158 HKIFIGGLPN 167
+++ I GLP+
Sbjct: 107 YRVIITGLPS 116
>gi|444518829|gb|ELV12414.1| Cleavage stimulation factor subunit 2 [Tupaia chinensis]
Length = 409
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDTAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|192764312|gb|ACF05700.1| betaCstF-64 variant 3 [Mus musculus]
Length = 630
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|389582230|dbj|GAB64785.1| RNA binding domain [Plasmodium cynomolgi strain B]
Length = 1046
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 86 ACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ-------PTPGVTD 138
AC I D ++AF+EFR++ +T+ M +GINF G +L+I RP + P P +
Sbjct: 693 AC-IRGDTHYAFVEFRTLQDTSNCMLLNGINFYGNNLRIGRPKTFPAELTSLIPAPTIPT 751
Query: 139 NAAVAVPAGVI 149
+ + G+I
Sbjct: 752 IDSYYLSQGII 762
>gi|192764316|gb|ACF05702.1| betaCstF-64 variant 1 [Mus musculus]
Length = 604
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 27/160 (16%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFL 98
+A RLYVGN+P+ +T ++ FN+ AG+ V++ +I D + FAF+
Sbjct: 244 EASRLYVGNLPYSMTSSQLGXVFNE----------AGS-VISVEIVYDRVTDRSRGFAFV 292
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSP 157
S+ E +A+ FDG G+++K+ P P + A + DSP
Sbjct: 293 TMGSVQEAKEAIRMFDGSQVGGRTVKVNFPE----VPRGGERAVMGPKIRSSYRGFVDSP 348
Query: 158 HKIFIGGLPNYLNED---QAIAGLNGMQLGDKKLIVQRAS 194
+KI+ G L L + A A G+ LG K+I +R S
Sbjct: 349 YKIYAGNLSWRLTSEGLRDAFADXPGL-LG-AKVIYERES 386
>gi|422304104|ref|ZP_16391453.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9806]
gi|389790787|emb|CCI13324.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9806]
Length = 97
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 16/92 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQ-----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+YVGN+PF V +D+++E F + ++HL + + + FAF+E +
Sbjct: 3 IYVGNLPFEVDQDDVVEVFKEYGKIKRVHLP----------MDRETGKKRGFAFVEMETP 52
Query: 104 DETTQAM-AFDGINFKGQSLKIRRPHDYQPTP 134
+E +A+ A DG + G+ LK+ + + +P P
Sbjct: 53 EEEAKAIAALDGAQWMGRELKVNQAREREPKP 84
>gi|196115100|ref|NP_001124486.1| cleavage stimulation factor, 3' pre-RNA subunit 2 [Rattus
norvegicus]
gi|195539770|gb|AAI68251.1| Cstf2 protein [Rattus norvegicus]
Length = 575
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|26328597|dbj|BAC28037.1| unnamed protein product [Mus musculus]
Length = 580
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|260797827|ref|XP_002593902.1| hypothetical protein BRAFLDRAFT_61143 [Branchiostoma floridae]
gi|229279134|gb|EEN49913.1| hypothetical protein BRAFLDRAFT_61143 [Branchiostoma floridae]
Length = 166
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 29 AAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQ 88
A A A P + + R +YVGN+ +G T +E+ + H G +L +
Sbjct: 30 ATAGVAFPSIEDKMEADGRSVYVGNVDYGATAEEL------EAHFHGCGSINRVTILCDK 83
Query: 89 INLD-KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
K FA++EF D A A D F+G+ +K+ +P TD
Sbjct: 84 FTGHPKGFAYIEFADKDSIETAKALDDSLFRGRQIKVVPKRTNRPGVSTTD 134
>gi|192764314|gb|ACF05701.1| alphaCstF-64 variant 4 [Mus musculus]
Length = 554
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|18875338|ref|NP_573459.1| cleavage stimulation factor subunit 2 [Mus musculus]
gi|71153229|sp|Q8BIQ5.2|CSTF2_MOUSE RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|11139720|gb|AAG31814.1|AF317552_1 polyadenylation protein CSTF64 [Mus musculus]
gi|26353226|dbj|BAC40243.1| unnamed protein product [Mus musculus]
Length = 580
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|22478042|gb|AAH36719.1| Cstf2 protein [Mus musculus]
Length = 510
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEFR 101
RLYVGN+P+ +T E+ + F + AG V+ QI DK F F+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGE----------AGT-VVDVQIVYDKVTDRSRGFGFVTMG 165
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKI 160
SI+E AM F+ G+++K+ P P +N + + DSPHK+
Sbjct: 166 SIEEAKGAMQMFNSSQIGGRTVKVNFPE----VPRGGENEVMRTKIRDNNRSYVDSPHKV 221
Query: 161 FIGGL 165
+ G L
Sbjct: 222 YAGNL 226
>gi|91094279|ref|XP_970760.1| PREDICTED: similar to splicing factor proline- and glutamine-rich
[Tribolium castaneum]
gi|270014396|gb|EFA10844.1| hypothetical protein TcasGA2_TC001621 [Tribolium castaneum]
Length = 495
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL--EFRSIDE 105
RLYVGNI VTED++ E F S +N +KNFAF+ ++R+ E
Sbjct: 143 RLYVGNIGNDVTEDDLTELFRPYGETSEHF-----------VNKEKNFAFIRVDYRANAE 191
Query: 106 TTQAMAFDGINFKGQSLKIR 125
+ DGI FKG++LKIR
Sbjct: 192 KAKR-ELDGILFKGKNLKIR 210
>gi|315047680|ref|XP_003173215.1| U4/U6 snRNA-associated-splicing factor PRP24 [Arthroderma gypseum CBS
118893]
gi|311343601|gb|EFR02804.1| U4/U6 snRNA-associated-splicing factor PRP24 [Arthroderma gypseum CBS
118893]
Length = 1329
Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
+ R +YV NIP+ TE +++E F G ++ P ++N + + FAF+ F +
Sbjct: 1010 EGREIYVCNIPYKTTEGDLVELFTAY----GDVESVRIPT---KVNGETRGFAFVSFATK 1062
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
D++T A+A + FKG+ L +R
Sbjct: 1063 DQSTAALALNEKTFKGRELNVR 1084
>gi|353241704|emb|CCA73501.1| related to pre-mrna splicing factor srp55 [Piriformospora indica
DSM 11827]
Length = 194
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+RRLYVG +P V +++ FF + + V+ C+I F F+EF S ++
Sbjct: 2 SRRLYVGKLPPDVNSEDVRRFFEDEARVK---------VVDCRIMT--GFGFIEFDSSED 50
Query: 106 TTQAMAFDGINFKGQ 120
A+ DG +F+GQ
Sbjct: 51 MDTALRLDGHDFQGQ 65
>gi|327306541|ref|XP_003237962.1| pre-mRNA splicing factor [Trichophyton rubrum CBS 118892]
gi|326460960|gb|EGD86413.1| pre-mRNA splicing factor [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
+ R +YV NIP+ TE +++E F G ++ P ++N D + F F+ F +
Sbjct: 983 EGREIYVCNIPYKTTEGDLVELFTAY----GDVESVRIPT---KVNGDTRGFGFVTFATK 1035
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
D++T A+A + FKG+ L +R
Sbjct: 1036 DQSTAALAMNEKTFKGRELNVR 1057
>gi|126277431|ref|XP_001369327.1| PREDICTED: polyadenylate-binding protein 2-like [Monodelphis
domestica]
Length = 306
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF
Sbjct: 170 DARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 223
Query: 104 DETTQAMAFDGINFKGQSLKI 124
D +MA D F+G+ +K+
Sbjct: 224 DSVRTSMALDDSLFRGRQIKV 244
>gi|60599450|gb|AAX26270.1| unknown [Schistosoma japonicum]
Length = 156
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 181 MQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGL 214
MQLGDKKLIVQRASVGAK+ +G + +PGL
Sbjct: 1 MQLGDKKLIVQRASVGAKHTTGVLPQTLLSLPGL 34
>gi|25153309|ref|NP_741039.1| Protein RSP-7, isoform a [Caenorhabditis elegans]
gi|56749455|sp|O01159.3|RSP7_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 7;
AltName: Full=p54
gi|20338921|emb|CAA85414.2| Protein RSP-7, isoform a [Caenorhabditis elegans]
Length = 452
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFRSIDE 105
R +YVGN+P GV +E++E FN A+ A P L C +A++EF
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCA------YAYVEFSQQAS 216
Query: 106 TTQAMAFDGINFKGQSLKIR 125
A+ DG FK + LKI+
Sbjct: 217 VCNALQNDGFEFKERPLKIQ 236
>gi|395503056|ref|XP_003755889.1| PREDICTED: polyadenylate-binding protein 2 [Sarcophilus harrisii]
Length = 333
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 198 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKD 251
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
+MA D F+G+ +K+ +P TD
Sbjct: 252 SVRTSMALDDSLFRGRQIKVIPKRTNRPGISTTDR 286
>gi|324510431|gb|ADY44362.1| Splicing factor, arginine/serine-rich 7 [Ascaris suum]
Length = 497
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
R +YVGN+P +E+M FFN + + L A+ N L C +A++EF S
Sbjct: 163 RTIYVGNLPKECDSNELMWFFNDNIGEVMYLRMASFNDSLPCA------YAYIEFASQPT 216
Query: 106 TTQAMAFDGINFKGQSL 122
A+ +GI FKG+SL
Sbjct: 217 VLTALQNNGIIFKGKSL 233
>gi|308456423|ref|XP_003090653.1| hypothetical protein CRE_01432 [Caenorhabditis remanei]
gi|308261964|gb|EFP05917.1| hypothetical protein CRE_01432 [Caenorhabditis remanei]
Length = 183
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSID 104
A+ ++VGN+ FG T E+ + H G Q + ++ N KNFA++EF D
Sbjct: 53 AKSIFVGNVDFGATVAEL------EAHFYGCGQIVRTRIPKNKMTNRQKNFAYIEFECAD 106
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT 137
AM +G F+G+ + + +P G +
Sbjct: 107 NAENAMVMNGSTFRGRPIVVTTKRTNKPGMGAS 139
>gi|449514352|ref|XP_004177208.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1 [Taeniopygia guttata]
Length = 633
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMME 65
G G IPA + P T A P++G S I R +YVGN+ T D+++E
Sbjct: 143 GTLGAIPAAALDPNIT-ALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 201
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FF Q + + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 202 FFKQVGEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|17539754|ref|NP_502291.1| Protein F11A10.7 [Caenorhabditis elegans]
gi|15718191|emb|CAC70081.1| Protein F11A10.7 [Caenorhabditis elegans]
Length = 394
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRS 102
++VGN+PF +TED ++ FF+ Q+ PV A +I DK+ FAF+ F+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQI----------GPVEAVRIVRDKDTGKGKGFAFVNFKQ 297
Query: 103 IDETTQAMAFDGINFKGQSLKI 124
+ A++ + I + + L+I
Sbjct: 298 DSSVSLALSMETIKMEKRDLRI 319
>gi|320038617|gb|EFW20552.1| pre-RNA splicing factor Srp2 [Coccidioides posadasii str. Silveira]
gi|392870837|gb|EJB12074.1| pre-RNA splicing factor Srp2 [Coccidioides immitis RS]
Length = 302
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR-SIDET 106
RLY+GN+P VT+ ++ E FNQ H SG I L F F+E+ ++D
Sbjct: 8 RLYLGNLPRNVTKQDVEEHFNQ--HGSG---------KITDIKLMSGFGFIEYEDALDAR 56
Query: 107 TQAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
A+ G +FKG L + R P + G +D + P +P+++ I
Sbjct: 57 DVVPAYHGTDFKGSRLTVQFARGPRHKETFSGPSDRSNAPRPRR--------TPYRMQIS 108
Query: 164 GLPN 167
GLP
Sbjct: 109 GLPE 112
>gi|440293229|gb|ELP86372.1| 28 kDa ribonucleoprotein, putative [Entamoeba invadens IP1]
Length = 315
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI----NLDKNFAFLEFRSI 103
+LYVGN+ + TED + + H + + C + K FAF+E+ +
Sbjct: 3 KLYVGNLSYSTTEDSL------KTHFESFGK-----IKECHLITFRGYSKGFAFVEYENT 51
Query: 104 DETTQAMAFDGINFKGQSLKI 124
D+ +A++ +G+ F G+ L++
Sbjct: 52 DDAKKAISSNGVEFDGRKLRV 72
>gi|345491945|ref|XP_001599982.2| PREDICTED: nucleolar protein 12-like [Nasonia vitripennis]
Length = 613
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
Q R +++GNIPF +TEDE+ + F+ + + V + L + ++ F + D
Sbjct: 432 QKRAVFLGNIPFDITEDEVRKHFDSCGKIESV-----RIVKDRKSGLSRGIGYVNFENQD 486
Query: 105 ETTQAMAFDGINFKGQSLKIR 125
T A+ +G N K + ++++
Sbjct: 487 SVTLALELNGTNLKNREIRVQ 507
>gi|149055454|gb|EDM07038.1| rCG38164 [Rattus norvegicus]
Length = 363
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|148688462|gb|EDL20409.1| cleavage stimulation factor, 3' pre-RNA subunit 2 [Mus musculus]
Length = 363
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|300176269|emb|CBK23580.2| unnamed protein product [Blastocystis hominis]
Length = 276
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFF-----NQQMHLSGLAQ----AAGNPVLACQINLDKN 94
R R L++GN+PF E+E+ FF Q+ HL + + + + + K
Sbjct: 179 RNHRTLFIGNLPFDADEEELRSFFESGMLKQKTHLEEGSHEEFVESVRLIRSKDLQKGKG 238
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127
F ++ +S E A+ DG FKG+ L++ R
Sbjct: 239 FGYVTLKSAVEMPLALLLDGKEFKGRELRVSRK 271
>gi|19112188|ref|NP_595396.1| U2AF large subunit (U2AF-59) [Schizosaccharomyces pombe 972h-]
gi|549144|sp|P36629.1|U2AF2_SCHPO RecName: Full=Splicing factor U2AF 59 kDa subunit; AltName: Full=U2
auxiliary factor 59 kDa subunit; Short=U2AF59; AltName:
Full=U2 snRNP auxiliary factor large subunit
gi|410322|gb|AAA03578.1| splicing factor U2AF large subunit [Schizosaccharomyces pombe]
gi|5441489|emb|CAB46760.1| U2AF large subunit (U2AF-59) [Schizosaccharomyces pombe]
Length = 517
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL V IP ED + F + + + + ++NFA LE +
Sbjct: 195 SRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPETKHFSSVNVCKEENFAILEVAT 254
Query: 103 IDETTQAMAFDGINFKGQ-SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
++ T ++ LK +R +Y P +T + V DS KI+
Sbjct: 255 PEDATFLWGLQSESYSNDVFLKFQRIQNYI-VPQITPEVSQKRSDDYAKNDVLDSKDKIY 313
Query: 162 IGGLPNYLNEDQAIAGLN 179
I LP L EDQ + L
Sbjct: 314 ISNLPLNLGEDQVVELLK 331
>gi|341889048|gb|EGT44983.1| CBN-RSP-7 protein [Caenorhabditis brenneri]
Length = 455
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAF 97
S + R +YVGN+P G+ E++E FN + + A+G L C +A+
Sbjct: 155 ASKVEEIRRTVYVGNLPKGIDGKEVLEMFNMYFGEVMYVRMASGPDALPCA------YAY 208
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKIR 125
+EF + A+ DG FK + LKI+
Sbjct: 209 VEFSQQASVSNALQNDGFEFKERPLKIQ 236
>gi|242018247|ref|XP_002429590.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
gi|212514557|gb|EEB16852.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
Length = 408
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
+ + R R ++VGNIPF +TE+++ E F++ PVL+ ++ D K
Sbjct: 7 TMLERSMRSVFVGNIPFDLTEEKLKEIFSE-----------VGPVLSFKLVYDRENGKPK 55
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
+ F E++ I+ AM +G G+ LK+
Sbjct: 56 GYGFCEYKDIETANSAMRNLNGFEIGGRVLKV 87
>gi|308459099|ref|XP_003091875.1| hypothetical protein CRE_30220 [Caenorhabditis remanei]
gi|308254855|gb|EFO98807.1| hypothetical protein CRE_30220 [Caenorhabditis remanei]
Length = 188
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSID 104
AR +++GN+ FG T +E+ + H G + + ++ KN+AF+EF S D
Sbjct: 54 ARSIFIGNVEFGATVEELED------HFKGCGEIVRTTIPKDKLTKKQKNYAFIEFESSD 107
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
AM +G F+ + + + +P G
Sbjct: 108 SVENAMVMNGSTFRERQIVVTSKRTNKPGMG 138
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 18 ANVIIPETTVAAAAAAAVPVVGSTITRQA--RRLYVGNIPFGVTEDEMMEFFNQQMHLSG 75
A+V+ E A VP + R+ R LYVGN+ +TED + ++F
Sbjct: 48 ADVVPEENEEANKEPPVVPANATHGGRETSDRVLYVGNLDKSITEDILKQYF-------- 99
Query: 76 LAQAAGNPVLACQINLDK-----NFAFLEF-RSIDETTQAMAFDGINFKGQSLKIRRPHD 129
Q AG ++ ++ +DK N+AF+E+ ++ D + +GI + +KI R
Sbjct: 100 --QVAGQ-IVDVKVMIDKKSNYVNYAFVEYAKAHDASVALQTLNGIQIENNKVKINRA-- 154
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL 169
+Q TD++ + G ++ + D P+Y+
Sbjct: 155 FQSQQSTTDDSTFNLFVGDLNIDIDDDTLSRSFKDFPSYI 194
>gi|145522908|ref|XP_001447297.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124414799|emb|CAK79900.1| unnamed protein product [Paramecium tetraurelia]
Length = 466
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 22 IPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTED----EMMEFFNQQMHLSGLA 77
+P+T + V S +T + RR+ + NIP G+T E+ F N+ +L+ +
Sbjct: 155 VPKTNLHDKVREDKEKVMS-LTSRMRRIQICNIPTGLTNRDLYAELSRFMNRN-YLNDVG 212
Query: 78 QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
A P+L C +N LE S++E+ + + + I +S KI R D
Sbjct: 213 NAK--PILYCHLNEKDRTCTLELSSVEESNRMLKLEEIKLLDESCKIFRLGD 262
>gi|425434339|ref|ZP_18814808.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9432]
gi|425450077|ref|ZP_18829909.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 7941]
gi|440751641|ref|ZP_20930844.1| RNA recognition motif family protein [Microcystis aeruginosa
TAIHU98]
gi|389676192|emb|CCH94745.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9432]
gi|389769258|emb|CCI05857.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 7941]
gi|440176134|gb|ELP55407.1| RNA recognition motif family protein [Microcystis aeruginosa
TAIHU98]
Length = 97
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQ-----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+YVGN+PF V +D+++E F + ++HL + + + FAF+E +
Sbjct: 3 IYVGNLPFEVDQDDVVEVFKEYGKIKRVHLP----------MDRETGKKRGFAFVEMETP 52
Query: 104 DETTQAM-AFDGINFKGQSLKIRRPHDYQPT 133
+E T+A+ A DG + G+ LK+ + + +P
Sbjct: 53 EEETKAIAALDGAQWMGRELKVNQAREREPK 83
>gi|393906197|gb|EJD74210.1| splicing factor [Loa loa]
Length = 542
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 2 GVNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVG-----STITRQARRLYVGNIPF 56
V N++ + G Q+ ++ + T+AA P + S + R +YVGNIP
Sbjct: 116 NVVNQIKDLGDGQQM---LLTVDPTLAALGLPPYPTLSANTEASKVEEIRRTIYVGNIPK 172
Query: 57 GVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 115
+E+M+FFN + + L +G L C +A++EF + A+ +GI
Sbjct: 173 DCGGEEVMKFFNDNIGEVMYLRMTSGTENLPCA------YAYVEFTNQPTVPIALQNNGI 226
Query: 116 NFKGQSLKI 124
FKG+ L+I
Sbjct: 227 EFKGRCLRI 235
>gi|425461447|ref|ZP_18840925.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9808]
gi|389825682|emb|CCI24355.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9808]
Length = 97
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQ-----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+YVGN+PF V +D+++E F + ++HL + + + FAF+E +
Sbjct: 3 IYVGNLPFEVDQDDVVEVFKEYGKIKRVHLP----------MDRETGKKRGFAFVEMETP 52
Query: 104 DETTQAM-AFDGINFKGQSLKIRRPHDYQPT 133
+E T+A+ A DG + G+ LK+ + + +P
Sbjct: 53 EEETKAIAALDGAQWMGRELKVNQAREKEPK 83
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 70/236 (29%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK----- 93
G I+R+ LYVG +P + ED + E F +A PV + +I DK
Sbjct: 38 GREISRKV--LYVGGLPKSINEDALNEKF-----------SASGPVFSVKILNDKNKQGF 84
Query: 94 NFAFLEFRSIDETTQAMA---FDGINFKGQSLKIRRPHDYQPT----PGVTDNAAVAVPA 146
N+AF+EF +DE A A F+G +F+ LKI + YQ + +D+ +
Sbjct: 85 NYAFVEF--VDEAGAAAALQEFNGSSFENSMLKIN--YAYQSSTFNATQNSDDPTYNIFV 140
Query: 147 GVISTVVPD-SPHKIFIG------------------------GLPNYLNEDQAIAGLNGM 181
G +S V D S HK F N + + A++ +NG
Sbjct: 141 GDLSPEVDDESLHKFFSAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGK 200
Query: 182 QLGDKKLIVQRASVGAKNASG-------QQAPVQIQVPGLTQVGQAGPATECPVPV 230
L + + AS +N+ G +Q Q Q PG E PVP+
Sbjct: 201 VLNGRAIRCNWASHKQQNSRGAPRQNNQRQFRPQYQRPGF---------NESPVPM 247
>gi|209882003|ref|XP_002142439.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209558045|gb|EEA08090.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 1078
Score = 45.1 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
S I++ R +Y GN+P+ TE+E+ E F + + ++ VL +K AF+
Sbjct: 873 SNISKDNREVYCGNLPYSCTEEEVRELFAECGSMERVS------VLE-----NKGCAFIT 921
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
F++ + AM ++ +KG+ L+I D +P PG
Sbjct: 922 FKTEEGAKSAMEWNRTEYKGRMLRINMSVD-KPQPG 956
>gi|326478692|gb|EGE02702.1| pre-mRNA splicing factor [Trichophyton equinum CBS 127.97]
Length = 1545
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
+ R +YV NIP+ TE +++E F G ++ P ++N + + F F+ F +
Sbjct: 966 EGREIYVCNIPYKTTEGDLVELFTAY----GDVESVRIPT---KVNGETRGFGFVTFATK 1018
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
D++T A+A + FKG+ L +R
Sbjct: 1019 DQSTAALAMNEKTFKGRELNVR 1040
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 35 VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN 94
P V I ++YVGNI + V E+ E+F+Q V++ ++ D+
Sbjct: 225 TPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQ-----------CGTVVSTRLLTDRK 273
Query: 95 ------FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
+ FL F S +E A+ D +F G+++ +R+ H+
Sbjct: 274 GGRGRVYGFLSFASAEELEAALKLDNTHFHGRNILVRQAHE 314
>gi|322712046|gb|EFZ03619.1| MRD1-like protein [Metarhizium anisopliae ARSEF 23]
Length = 841
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 21/128 (16%)
Query: 3 VNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDE 62
+ N+ L++ ++ ++ T VA + A S I+R +R L+V N+P+ TED+
Sbjct: 275 MENDRLSSHSSDEVTPGTT---TDVATSKETATEDAVSAISRTSR-LFVRNLPYSATEDD 330
Query: 63 MMEFFN-----QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGIN 116
+ E F+ Q++HL P+ A K FA + F + + +A A DG+
Sbjct: 331 IRETFDKFGTLQEVHL---------PLTAAGAT--KGFAMVLFTNSSDAVRAFQALDGVT 379
Query: 117 FKGQSLKI 124
F+G+ L I
Sbjct: 380 FQGRILHI 387
>gi|440795967|gb|ELR17076.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 347
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN----FAFLEFR 101
AR +YVGN+ +T +++M+FF A P+ C++ D++ FAF+EF
Sbjct: 175 ARTIYVGNVNSTITSEQLMQFF-----------AICGPITFCRLAGDESHPSRFAFIEFA 223
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---PGVTDNA 140
+ + AM +G +++K+ H P P DNA
Sbjct: 224 TKEAAQAAMMLNGTMLLDRAVKVN--HSKNPIVKPPKTVDNA 263
>gi|255939157|ref|XP_002560348.1| Pc15g01230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584970|emb|CAP83009.1| Pc15g01230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 507
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL----AQAAGNPVLACQINLDK 93
G + ++ L+VGN+PF TED + E F + G+ Q G P K
Sbjct: 347 YGDQTSPESDTLFVGNLPFSATEDALHEVFGAHGSVLGIRLPTEQETGRP---------K 397
Query: 94 NFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124
F +++F SIDE A A +G +G+++++
Sbjct: 398 GFGYVQFSSIDEAKAAHGALNGHELEGRAVRL 429
>gi|427796791|gb|JAA63847.1| Putative splicing factor rnps1 sr protein superfamily, partial
[Rhipicephalus pulchellus]
Length = 249
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 120 ARSIYVGNVDYGATAEEL------EQHFHGCGSINRVTILCDKFSGHPKGFAYIEFTDKD 173
Query: 105 ETTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 174 SIQTAMALDESLFRGRQIKV 193
>gi|426192453|gb|EKV42389.1| hypothetical protein AGABI2DRAFT_228803 [Agaricus bisporus var.
bisporus H97]
Length = 443
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 42 ITRQARR---LYVGNIPFGVTEDEMMEFFNQQ-----MHLSGLAQAAGNPVLACQINLDK 93
+ R +R ++VGN+ F TE+E+ FF + + + ++A G P + ++
Sbjct: 102 VDRDVKRKNSVWVGNMTFKTTEEELKTFFKDRGLGEVIRIHMPSKAGGKPGFKSE---NR 158
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPG-VTDNAAVAV 144
FA+++F S ++ A+A G+ L I+ D+ P T+NAA+ +
Sbjct: 159 GFAYVDFDSTEDKQAAIALSEQPLLGRKLLIKDGDDFTGRPNQSTENAAITI 210
>gi|427796401|gb|JAA63652.1| Putative splicing factor rnps1 sr protein superfamily, partial
[Rhipicephalus pulchellus]
Length = 300
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 120 ARSIYVGNVDYGATAEEL------EQHFHGCGSINRVTILCDKFSGHPKGFAYIEFTDKD 173
Query: 105 ETTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 174 SIQTAMALDESLFRGRQIKV 193
>gi|405978177|gb|EKC42587.1| Polyadenylate-binding protein 2 [Crassostrea gigas]
Length = 244
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 32 AAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL 91
A+ P + AR +YVGN+ +G T +E+ + H G +L +
Sbjct: 86 ASPFPSAEEKMDADARSVYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCDKFTG 139
Query: 92 D-KNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
K FA++EF D T A A D F+G+ +K+
Sbjct: 140 HPKGFAYVEFADKDSVTTAQALDESLFRGRQIKV 173
>gi|449691485|ref|XP_002170081.2| PREDICTED: uncharacterized protein LOC100212876, partial [Hydra
magnipapillata]
Length = 312
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R ++V NIP +T D++M FF+ + L G+ +AF+EF +ID
Sbjct: 25 RTVFVQNIPPDITADQLMAFFSGVGEVKYLRLCKGDS---------GKYAFVEFTAIDSV 75
Query: 107 TQAMAFDGINFKGQSLKIRRPHDYQPTP 134
A+ ++G+ F G+ LK+ DY P
Sbjct: 76 PTALQYNGVLFGGRCLKV----DYSKHP 99
>gi|317143798|ref|XP_003189536.1| pre-RNA splicing factor Srp2 [Aspergillus oryzae RIB40]
Length = 299
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR-SIDET 106
RLY+GN+P VT+ ++ E F+ H SG +I L F F+E+ ++D
Sbjct: 8 RLYLGNLPRNVTKQDIEEHFS--THGSG---------KITEIKLMNGFGFIEYEDAMDAR 56
Query: 107 TQAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
AF G +FKG+ L + R P + PG D + P + +++ +
Sbjct: 57 DVVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTV--------YRMMVS 108
Query: 164 GLPNYLNED 172
GLP +D
Sbjct: 109 GLPETSWQD 117
>gi|154284490|ref|XP_001543040.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406681|gb|EDN02222.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 300
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLY+GN+P VT+ E+ + FN H SG +I L F F+E+ +
Sbjct: 8 RLYLGNLPRNVTKQEIEDHFNSH-HGSG---------KITEIKLMSGFGFIEYEDAMDAK 57
Query: 108 QAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+ DG +FKG+ L + R P + G +D ++ P I +++ I G
Sbjct: 58 DVVP-DGTDFKGERLTVQFARGPRHKETFSGPSDRSSAPRPRRTI--------YRMQISG 108
Query: 165 LPN 167
LP
Sbjct: 109 LPE 111
>gi|238487096|ref|XP_002374786.1| pre-RNA splicing factor Srp2, putative [Aspergillus flavus
NRRL3357]
gi|317143800|ref|XP_001819713.2| pre-RNA splicing factor Srp2 [Aspergillus oryzae RIB40]
gi|220699665|gb|EED56004.1| pre-RNA splicing factor Srp2, putative [Aspergillus flavus
NRRL3357]
Length = 300
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR-SIDET 106
RLY+GN+P VT+ ++ E F+ H SG +I L F F+E+ ++D
Sbjct: 8 RLYLGNLPRNVTKQDIEEHFS--THGSG---------KITEIKLMNGFGFIEYEDAMDAR 56
Query: 107 TQAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
AF G +FKG+ L + R P + PG D + P + +++ +
Sbjct: 57 DVVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTV--------YRMMVS 108
Query: 164 GLPNYLNED 172
GLP +D
Sbjct: 109 GLPETSWQD 117
>gi|409079593|gb|EKM79954.1| hypothetical protein AGABI1DRAFT_72681 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 443
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 42 ITRQARR---LYVGNIPFGVTEDEMMEFFNQQ-----MHLSGLAQAAGNPVLACQINLDK 93
+ R +R ++VGN+ F TE+E+ FF + + + ++A G P + ++
Sbjct: 102 VDRDVKRKNSVWVGNMTFKTTEEELKTFFKDRGLGEVIRIHMPSKAGGKPGFKSE---NR 158
Query: 94 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPG-VTDNAAVAV 144
FA+++F S ++ A+A G+ L I+ D+ P T+NAA+ +
Sbjct: 159 GFAYVDFDSTEDKQAAIALSEQPLLGRKLLIKDGDDFTGRPNQSTENAAITI 210
>gi|68465417|ref|XP_723070.1| potential single-stranded nucleic acid binding protein [Candida
albicans SC5314]
gi|68465712|ref|XP_722924.1| potential single-stranded nucleic acid binding protein [Candida
albicans SC5314]
gi|46444932|gb|EAL04203.1| potential single-stranded nucleic acid binding protein [Candida
albicans SC5314]
gi|46445087|gb|EAL04357.1| potential single-stranded nucleic acid binding protein [Candida
albicans SC5314]
Length = 282
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQ----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R+YVGN+ F TEDE+ E F ++ + G+ V + FAF++F +
Sbjct: 17 RIYVGNVDFKATEDELKELFQDLKVTEVEIPFKENTRGDKVFKRHL----GFAFVQFENK 72
Query: 104 DETTQAMA-FDGINFKGQSLKIRR 126
D+ +A+A ++G F+ +++ I++
Sbjct: 73 DDADKAIATYNGQKFQRRNIFIKK 96
>gi|239606902|gb|EEQ83889.1| pre-RNA splicing factor Srp2 [Ajellomyces dermatitidis ER-3]
gi|327351368|gb|EGE80225.1| RNA recognition domain-containing protein containing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 299
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLY+GN+P VT+ E+ + FN H SG +I L F F+E+ +
Sbjct: 8 RLYLGNLPRNVTKQEIEDHFNSH-HGSG---------KITEIKLMSGFGFIEYEDAMDAK 57
Query: 108 QAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+ DG +FKG+ L + R P + G +D ++ P I +++ I G
Sbjct: 58 DVVP-DGTDFKGERLTVQFARGPRHKETFSGPSDRSSAPRPRRTI--------YRMQISG 108
Query: 165 LPN 167
LP
Sbjct: 109 LPE 111
>gi|241953201|ref|XP_002419322.1| nucleolar single-stranded nucleic acid-binding protein, putative
[Candida dubliniensis CD36]
gi|223642662|emb|CAX42915.1| nucleolar single-stranded nucleic acid-binding protein, putative
[Candida dubliniensis CD36]
Length = 277
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQ----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R+YVGN+ F TEDE+ E F ++ + G+ V + FAF++F +
Sbjct: 17 RIYVGNVDFKATEDELKELFQDLKVTEVEIPFKENTRGDKVFKRHL----GFAFVQFENK 72
Query: 104 DETTQAMA-FDGINFKGQSLKIRR 126
D+ +A+A ++G F+ +++ I++
Sbjct: 73 DDADKAIATYNGQKFQRRNIFIKK 96
>gi|357635456|ref|ZP_09133334.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|386393392|ref|ZP_10078173.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
gi|357584010|gb|EHJ49343.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|385734270|gb|EIG54468.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
Length = 98
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+++LYVGN+PF EDE+ + F+ + + N ++ + + F F+E +
Sbjct: 2 SKKLYVGNLPFSTNEDEIRDMFSAYGEVQSV-----NLIVDRETGRLRGFGFVEMTTEGA 56
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAA 141
A +G F G+ L+I + QP G+ + A
Sbjct: 57 DAAMEALNGKAFGGRDLRINEAQERQPRQGMGGSGA 92
>gi|238880817|gb|EEQ44455.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 282
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQ----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R+YVGN+ F TEDE+ E F ++ + G+ V + FAF++F +
Sbjct: 17 RIYVGNVDFKATEDELKELFQDLKVTEVEIPFKENTRGDKVFKRHL----GFAFVQFENK 72
Query: 104 DETTQAMA-FDGINFKGQSLKIRR 126
D+ +A+A ++G F+ +++ I++
Sbjct: 73 DDADKAIATYNGQKFQRRNIFIKK 96
>gi|326470511|gb|EGD94520.1| pre-mRNA splicing factor (Prp24) [Trichophyton tonsurans CBS 112818]
Length = 1279
Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
+ R +YV NIP+ TE +++E F G ++ P ++N + + F F+ F +
Sbjct: 960 EGREIYVCNIPYKTTEGDLVELFTAY----GDVESVRIPT---KVNGETRGFGFVTFATK 1012
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
D++T A+A + FKG+ L +R
Sbjct: 1013 DQSTAALAMNEKTFKGRELNVR 1034
>gi|193678811|ref|XP_001952437.1| PREDICTED: polyadenylate-binding protein 2-like isoform 1
[Acyrthosiphon pisum]
Length = 246
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ + T +E+ + H G +L + + K FA++EF +D
Sbjct: 111 ARSVYVGNVDYAATAEEL------ETHFHGCGSINRVTILCNKFDGHPKGFAYIEFADMD 164
Query: 105 ETTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 165 SVNTAMAMDDSLFRGRQIKV 184
>gi|336384970|gb|EGO26117.1| hypothetical protein SERLADRAFT_447385 [Serpula lacrymans var.
lacrymans S7.9]
Length = 693
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 34/189 (17%)
Query: 15 QIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLS 74
Q+ NV IP + AA + + R +YVGN+P + DE++ +H
Sbjct: 188 QLSLNVNIPSAPATYSPAALTAALSANSNATGRTVYVGNLPATASVDELLNL----VHFG 243
Query: 75 GLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDG------INFKGQSLKIRRPH 128
P+ + ++ +K+ FL F +D +T A AF + GQ LKI
Sbjct: 244 --------PLESIRVLPEKSCVFLSF--LDGST-AAAFHADATIKKLALHGQELKIGWG- 291
Query: 129 DYQPTPGVTDNAAVAVPAGV-ISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKK 187
+P+P VPA V ++ ++ +++GGL L E+Q L+ L D+
Sbjct: 292 --KPSP---------VPAQVALAISQSNASRNVYLGGLDESLTEEQLRDDLSRFGLIDQV 340
Query: 188 LIVQRASVG 196
IV+ ++G
Sbjct: 341 KIVRDKNIG 349
>gi|383861809|ref|XP_003706377.1| PREDICTED: hrp65 protein-like [Megachile rotundata]
Length = 566
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 15/84 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL--EFRSIDE 105
RLY+GN+ VTE+E+ + F Q +S L +N +KNFAFL ++R ++
Sbjct: 151 RLYIGNLTNDVTEEEIQQMFQQYGEISELF-----------VNKEKNFAFLRMDYR-VNA 198
Query: 106 TTQAMAFDGINFKGQSLKIR-RPH 128
DG KG++LK+R PH
Sbjct: 199 EKAKHELDGTMRKGRALKVRFAPH 222
>gi|449278700|gb|EMC86491.1| Splicing factor, arginine/serine-rich 12 [Columba livia]
Length = 517
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNIPFGVTE-DEMME 65
G G IPA + P T A P++G S I R +YVGN+ T D+++E
Sbjct: 27 GTLGAIPAAALDPNIT-ALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 85
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FF Q + + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 86 FFKQVGEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 137
>gi|380023432|ref|XP_003695527.1| PREDICTED: hrp65 protein-like [Apis florea]
Length = 563
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 15/84 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL--EFRSIDE 105
RLY+GN+ VTE+E+ + F Q +S L +N +KNFAFL ++R ++
Sbjct: 151 RLYIGNLTNDVTEEEIQQMFQQYGEISELF-----------VNKEKNFAFLRMDYR-VNA 198
Query: 106 TTQAMAFDGINFKGQSLKIR-RPH 128
DG KG++LK+R PH
Sbjct: 199 EKAKHELDGTMRKGRALKVRFAPH 222
>gi|326518878|dbj|BAJ92600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 246
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ + T +E+ + H G +L + + K FA++EF +D
Sbjct: 111 ARSVYVGNVDYAATAEEL------ETHFHGCGSINRVTILCNKFDGHPKGFAYIEFADMD 164
Query: 105 ETTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 165 SVNTAMAMDDSLFRGRQIKV 184
>gi|307107787|gb|EFN56029.1| hypothetical protein CHLNCDRAFT_13079, partial [Chlorella
variabilis]
Length = 132
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+R +YVGN+ + T +E+ QMH +L ++ K FA++EF D
Sbjct: 49 SRSVYVGNVDYSCTPEEL------QMHFQSCGTVNRVTILTDKMGNPKGFAYIEFLEADA 102
Query: 106 TTQAMAFDGINFKGQSLKI 124
T A DG + +++K+
Sbjct: 103 VTNACLLDGSELRNRAIKV 121
>gi|328792621|ref|XP_001121935.2| PREDICTED: hrp65 protein-like [Apis mellifera]
Length = 563
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 15/84 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL--EFRSIDE 105
RLY+GN+ VTE+E+ + F Q +S L +N +KNFAFL ++R ++
Sbjct: 151 RLYIGNLTNDVTEEEIQQMFQQYGEISELF-----------VNKEKNFAFLRMDYR-VNA 198
Query: 106 TTQAMAFDGINFKGQSLKIR-RPH 128
DG KG++LK+R PH
Sbjct: 199 EKAKHELDGTMRKGRALKVRFAPH 222
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEF 100
RRLYVGNIP VT DE L+ + Q G V ++ DK FAF+
Sbjct: 70 RRLYVGNIPRTVTNDE----------LAKIVQEHG-AVEKAEVMYDKYSGRSRRFAFVTM 118
Query: 101 RSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVI---STVVPDS 156
+++++ T + +G G+ +K+ VT+ + ++ + DS
Sbjct: 119 KTVEDATAVIEKLNGTELGGREIKV----------NVTEKPLSTLDLPLLQAEESEFIDS 168
Query: 157 PHKIFIGGLPNYLNED 172
PHK+++G L + D
Sbjct: 169 PHKVYVGNLAKTVTTD 184
>gi|383855268|ref|XP_003703137.1| PREDICTED: polyadenylate-binding protein 2-like [Megachile
rotundata]
Length = 228
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAERDS 153
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 154 VQTAMAMDESMFRGRQIKV 172
>gi|328725437|ref|XP_003248478.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2
[Acyrthosiphon pisum]
Length = 329
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ + T +E+ + H G +L + + K FA++EF +D
Sbjct: 194 ARSVYVGNVDYAATAEEL------ETHFHGCGSINRVTILCNKFDGHPKGFAYIEFADMD 247
Query: 105 ETTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 248 SVNTAMAMDDSLFRGRQIKV 267
>gi|354474899|ref|XP_003499667.1| PREDICTED: cleavage stimulation factor subunit 2 [Cricetulus
griseus]
gi|344238061|gb|EGV94164.1| Cleavage stimulation factor 64 kDa subunit [Cricetulus griseus]
Length = 558
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R + VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVCVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|340914918|gb|EGS18259.1| RNA-binding protein rnp24-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 436
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQ-------QMHLSGLAQAAGNPVLACQINLD-KNFAFLEF 100
+++GN+PF VT+ ++ ++ + ++ + P+ + + K FA+++F
Sbjct: 93 VWIGNLPFSVTKADLRKWLVDNSGGVITEDLITRVHMPTNKPMAGSKRTFENKGFAYVDF 152
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD-NAAVA-VPAGVISTVVPDSPH 158
+ + T A+A G+ L I+ ++Y+ P + AAVA +P G ST
Sbjct: 153 ATYEANTAAIALSETELNGRRLLIKDANNYEGRPKKEEPEAAVAKIPEGRSST------- 205
Query: 159 KIFIGGLPNYLNEDQAIA 176
KIF+G L ED A
Sbjct: 206 KIFVGNLAFNTTEDDLWA 223
>gi|380018099|ref|XP_003692973.1| PREDICTED: polyadenylate-binding protein 2-like [Apis florea]
Length = 228
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAERDS 153
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
AMA D F+G+ +K+ +P VT+
Sbjct: 154 VQTAMAMDESMFRGRQIKVMPKRTNRPGLSVTN 186
>gi|46580620|ref|YP_011428.1| RNA-binding protein [Desulfovibrio vulgaris str. Hildenborough]
gi|120602071|ref|YP_966471.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris DP4]
gi|387153909|ref|YP_005702845.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris RCH1]
gi|46450039|gb|AAS96688.1| RNA-binding protein [Desulfovibrio vulgaris str. Hildenborough]
gi|120562300|gb|ABM28044.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris DP4]
gi|311234353|gb|ADP87207.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris RCH1]
Length = 89
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
A+ LYVGN+PF +ED++ F + + ++ + + F F+E D
Sbjct: 2 AKTLYVGNLPFSASEDDVRSLFTNYGEVVSV-----KLIMDRETGRPRGFGFVEMNDGDA 56
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
A DG +F G++L++ + P P
Sbjct: 57 GAAIEALDGADFMGRALRVNEAQERAPRP 85
>gi|66512323|ref|XP_393066.2| PREDICTED: polyadenylate-binding protein 2 [Apis mellifera]
Length = 228
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAERDS 153
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
AMA D F+G+ +K+ +P VT+
Sbjct: 154 VQTAMAMDESMFRGRQIKVMPKRTNRPGLSVTN 186
>gi|290997908|ref|XP_002681523.1| predicted protein [Naegleria gruberi]
gi|284095147|gb|EFC48779.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+R +++GNI T + + F++ ++ + + AG+P A K FAF+EF +
Sbjct: 32 SRTIHIGNISSYTTVESLQLLFSKYGQVTNI-KLAGDPSYA------KRFAFVEFVDHHQ 84
Query: 106 TTQAMAFDGINFKGQSLKIRR-PHDY 130
+++ DG F GQ+LKI HD+
Sbjct: 85 AKLSLSLDGTEFMGQNLKISMAKHDF 110
>gi|302795628|ref|XP_002979577.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
gi|300152825|gb|EFJ19466.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
Length = 236
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN---FAFLEF 100
R +R +YVGN+P V E E+ + F++ P++ + L + F+EF
Sbjct: 1 RSSRTIYVGNLPGDVREREIDDLFHKY-----------GPIVDIDLKLPPRPPGYCFIEF 49
Query: 101 RSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
+ + A+ DG NF G L++ H + P ++ G +S S ++
Sbjct: 50 EDVRDAEDAIRGRDGYNFDGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVSRR---SEYR 106
Query: 160 IFIGGLPN 167
+ I GLP+
Sbjct: 107 VIITGLPS 114
>gi|67465896|ref|XP_649106.1| enhancer binding protein-2 [Entamoeba histolytica HM-1:IMSS]
gi|56465462|gb|EAL43716.1| enhancer binding protein-2, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704892|gb|EMD45051.1| enhancer binding protein, putative [Entamoeba histolytica KU27]
Length = 229
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+LY+GN+ + TE+ N + H + ++ + + FAF+E+ + ++
Sbjct: 3 KLYIGNLSYKTTEE------NLKTHFESFGKIKEAKLMIFR-GYSRGFAFVEYETEEDAK 55
Query: 108 QAMAFDGINFKGQSLKI---RRPHDYQPTP 134
+A+A +G+ F+G+ LK+ R P + + P
Sbjct: 56 KAVAANGVEFEGRKLKVEIARPPKERKEVP 85
>gi|349803921|gb|AEQ17433.1| putative poly binding nuclear 1 [Hymenochirus curtipes]
Length = 255
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 133 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSEKE 186
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
+MA D F+G+ +K+ +P TD
Sbjct: 187 SVRTSMALDESLFRGRQIKVGAKRTNKPGISTTDR 221
>gi|307196969|gb|EFN78344.1| Polyadenylate-binding protein 2 [Harpegnathos saltator]
Length = 228
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAERDS 153
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 154 VQTAMAMDESMFRGRQIKV 172
>gi|302829278|ref|XP_002946206.1| hypothetical protein VOLCADRAFT_72471 [Volvox carteri f.
nagariensis]
gi|300269021|gb|EFJ53201.1| hypothetical protein VOLCADRAFT_72471 [Volvox carteri f.
nagariensis]
Length = 242
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQ---MHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+R +YVGN+ +G T +E+ + F Q ++ L GNP K +A++EF
Sbjct: 101 SRSIYVGNVDYGCTPEELQQHFAQCGTVNRVTILTDKFGNP---------KGYAYVEFLE 151
Query: 103 IDETTQAMAFDGINFKGQSLKI 124
+D A+ D +G+ LK+
Sbjct: 152 VDAVQNAVLLDNSELRGRQLKV 173
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
++LYVG +P+ T+D + + F+Q +G ++A ++ K F F+E S DE
Sbjct: 3 KKLYVGGLPYSTTQDALNDLFSQ----AGTVESA-MIIIDKMTGRSKGFGFVEMASDDEA 57
Query: 107 TQAM-AFDGINFKGQSLKIR--RPHD 129
+A+ F+G +F+G+SL + RP +
Sbjct: 58 EKAIDMFNGKDFEGRSLTVNVARPME 83
>gi|308509674|ref|XP_003117020.1| CRE-RSP-7 protein [Caenorhabditis remanei]
gi|308241934|gb|EFO85886.1| CRE-RSP-7 protein [Caenorhabditis remanei]
Length = 466
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFL 98
S + R +YVGN+P G+ E++E FN + + A+G L C +A++
Sbjct: 156 SKVEEIRRTVYVGNLPKGIDGKEVLEMFNMYFGEVMYVRMASGPDALPCA------YAYV 209
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + A+ DG FK + LKI
Sbjct: 210 EFSQQASVSNALQNDGFEFKERPLKI 235
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 35 VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN 94
P V I ++YVGNI + V E+ E+F+Q V++ ++ D+
Sbjct: 70 TPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQ-----------CGTVVSTRLLTDRK 118
Query: 95 ------FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
+ FL F S +E A+ D +F G+++ +R+ H+
Sbjct: 119 GGRGRVYGFLSFASAEELEAALKLDNTHFHGRNILVRQAHE 159
>gi|307152307|ref|YP_003887691.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306982535|gb|ADN14416.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 116
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+YVGN+P+ VT+D++ E F + G + P+ + + FAF++ S E T+
Sbjct: 3 IYVGNLPYQVTQDDIKEVFGEY----GTVKQVKLPIDRESGRV-RGFAFVDLDSDAEETK 57
Query: 109 AM-AFDGINFKGQSLKIR--RPH-DYQPTPG 135
A+ A DG + G+ LK+ RP D +P+ G
Sbjct: 58 AIEALDGAEWMGRELKVSKARPRQDKRPSSG 88
>gi|307171015|gb|EFN63078.1| Polyadenylate-binding protein 2 [Camponotus floridanus]
Length = 228
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAERDS 153
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 154 VQTAMAMDESMFRGRQIKV 172
>gi|294925684|ref|XP_002778980.1| eukaryotic translation initiation factor 4b/4h, putative [Perkinsus
marinus ATCC 50983]
gi|239887826|gb|EER10775.1| eukaryotic translation initiation factor 4b/4h, putative [Perkinsus
marinus ATCC 50983]
Length = 357
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 49 LYVGNIPFGVTEDEMMEFF-NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+YVG +P+ +EDE+ FF ++ + G+ ++ + K F +L+F ++++
Sbjct: 67 VYVGGLPYSASEDELGFFFLDRNITPVGV-----RIIMDRETKKSKGFGYLDFATVEDYE 121
Query: 108 QAMAFDGINFKGQSLKI 124
A+ +G NF G+++K+
Sbjct: 122 AALGMNGSNFGGRTIKV 138
>gi|45433582|ref|NP_991398.1| non-POU domain containing, octamer-binding [Xenopus (Silurana)
tropicalis]
gi|42490832|gb|AAH66129.1| hypothetical protein MGC75848 [Xenopus (Silurana) tropicalis]
gi|89273854|emb|CAJ81640.1| non-POU domain containing, octamer-binding [Xenopus (Silurana)
tropicalis]
Length = 465
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P VTE+EM + F + AG I+ DK F F
Sbjct: 61 GEKTYTQRSRLFVGNLPMDVTEEEMRKLFEK-------YGKAGEIF----IHKDKGFGFI 109
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A D + +G+ L++R
Sbjct: 110 RLETRTLAEIAKA-ELDNLPLRGKQLRVR 137
>gi|332026434|gb|EGI66562.1| Polyadenylate-binding protein 2 [Acromyrmex echinatior]
Length = 228
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAERDS 153
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 154 VQTAMAMDESMFRGRQIKV 172
>gi|294868716|ref|XP_002765659.1| splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239865738|gb|EEQ98376.1| splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 347
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 39 GSTITRQARRLYVGNIPFGVTE-DEMMEFFN-------QQMHLSGLAQAAGNPVLACQIN 90
G+ ++A+ LYVGN+ G + EFFN + H AG + +++
Sbjct: 130 GAGQNKKAKELYVGNLAKGQANVANVKEFFNTALTALPEYQHKYAHILPAGC-IREVRLS 188
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---PGVTDNAAVAVPAG 147
+ F+EF S + A+ FD + F G+ L+I RP Y P P D + + V
Sbjct: 189 PCGQYCFVEFASEEICLTALEFDRVEFLGRQLRIARPTGYTPLGPPPAPMDVSVLRVQGF 248
Query: 148 VISTVVPDSPHK 159
+ +P +P +
Sbjct: 249 LPQKAMPANPQQ 260
>gi|302411083|ref|XP_003003375.1| translation initiation factor 4B [Verticillium albo-atrum VaMs.102]
gi|261358399|gb|EEY20827.1| translation initiation factor 4B [Verticillium albo-atrum VaMs.102]
Length = 395
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 18/82 (21%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSI 103
++GN+ + T D + EFF AG +++ +I D K FA+ EF ++
Sbjct: 122 HLGNLSYDATNDTVNEFF------------AGCEIISVRIIEDREQMRPKGFAYAEFATL 169
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
D +A+ DG NF+G++++++
Sbjct: 170 DGLKKALELDGENFQGRTIRVK 191
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 35 VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN 94
P V I ++YVGNI + V E+ E+F+Q V++ ++ D+
Sbjct: 70 TPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQ-----------CGTVVSTRLLTDRK 118
Query: 95 ------FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
+ FL F S +E A+ D +F G+++ +R+ H+
Sbjct: 119 GGRGRVYGFLSFASAEELEAALKLDNTHFHGRNILVRQAHE 159
>gi|340716338|ref|XP_003396656.1| PREDICTED: polyadenylate-binding protein 2-like [Bombus terrestris]
gi|350406230|ref|XP_003487700.1| PREDICTED: polyadenylate-binding protein 2-like [Bombus impatiens]
Length = 228
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSINRVTILCNKFDGHPKGFAYIEFAERDS 153
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
AMA D F+G+ +K+ +P VT+
Sbjct: 154 VQTAMAIDESMFRGRQIKVMPKRTNRPGLSVTN 186
>gi|317036141|ref|XP_001397700.2| pre-RNA splicing factor Srp2 [Aspergillus niger CBS 513.88]
gi|358368362|dbj|GAA84979.1| pre-RNA splicing factor Srp2 [Aspergillus kawachii IFO 4308]
Length = 301
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 23/129 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR-SIDET 106
RLY+GN+P VT+ ++ E F+ H SG +I L F F+E+ ++D
Sbjct: 8 RLYLGNLPRNVTKQDIEEHFS--THGSG---------KITEIKLMNGFGFIEYEDAMDAR 56
Query: 107 TQAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
AF G +FKG+ L + R P + PG D + P I ++ +
Sbjct: 57 DVVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTI--------FRMMVS 108
Query: 164 GLPNYLNED 172
GLP +D
Sbjct: 109 GLPETSWQD 117
>gi|401411763|ref|XP_003885329.1| putative splicing factor U2AF 65 kDa subunit [Neospora caninum
Liverpool]
gi|325119748|emb|CBZ55301.1| putative splicing factor U2AF 65 kDa subunit [Neospora caninum
Liverpool]
Length = 506
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 59 TEDEMMEFFNQQMHLSGLAQAAGNP----VLACQINLDK--NFAFLEFRSIDETTQAMAF 112
TED+ F H+ L + NP VL D+ N+ F+E S++E A+
Sbjct: 156 TEDD---FKRHMWHVMRLNNSCTNPAVCPVLHVWFARDRGGNYGFVEMASVEEAHAALRL 212
Query: 113 DGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVI 149
DG+ + G ++I RP D++ + V D++ + AG +
Sbjct: 213 DGMLWHGLPIRINRPTDWKNS--VADDSVLGALAGEL 247
>gi|336267120|ref|XP_003348326.1| hypothetical protein SMAC_02824 [Sordaria macrospora k-hell]
Length = 377
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 29 AAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPV 84
A AA G TI+ ++ L+VGN+PF E + +FFN ++ L Q +G P
Sbjct: 253 AKAADRAAKHGDTISPESDTLFVGNMPFTADESAVSDFFNSVASVASLRIPTDQESGRP- 311
Query: 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
K FA++ F SI++ AFD +N G L+ R
Sbjct: 312 --------KGFAYVTFNSIEDAKN--AFDQLN--GSDLQGR 340
>gi|453082591|gb|EMF10638.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 390
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQ------QMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
RLYVGN+P+ +++ + F + ++ +S + NP ++ F+EF+
Sbjct: 7 RLYVGNLPYVAQREDIEKLFAENHVDINKVDISIDPETGRNP----------SYCFVEFK 56
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTP 134
+ ++ T AM + GIN +G++L+I D +P P
Sbjct: 57 TQEDATNAMNSLQGINLQGRALRINPKTDRKPNP 90
>gi|380091978|emb|CCC10246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 456
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 29 AAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPV 84
A AA G TI+ ++ L+VGN+PF E + +FFN ++ L Q +G P
Sbjct: 253 AKAADRAAKHGDTISPESDTLFVGNMPFTADESAVSDFFNSVASVASLRIPTDQESGRP- 311
Query: 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
K FA++ F SI++ AFD +N G L+ R
Sbjct: 312 --------KGFAYVTFNSIEDAKN--AFDQLN--GSDLQGR 340
>gi|291190353|ref|NP_001167243.1| Polyadenylate-binding protein 2 [Salmo salar]
gi|223648842|gb|ACN11179.1| Polyadenylate-binding protein 2 [Salmo salar]
Length = 237
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSI 103
AR +YVGN+ +G T +E+ + H G +L + K FA++EF
Sbjct: 100 DARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDK 153
Query: 104 DETTQAMAFDGINFKGQSLKI 124
+ AMA D F+G+ +K+
Sbjct: 154 ESVRTAMALDESLFRGRQIKV 174
>gi|88811230|ref|ZP_01126486.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
gi|88791769|gb|EAR22880.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
Length = 94
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRS 102
+YVGN+PF +EDE+ E F AA V + ++ D++ F F+
Sbjct: 4 IYVGNLPFSASEDELRELF-----------AAYGNVDSVRLMTDRDTGRPRGFGFVTMSD 52
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
D + A DG +F G++L++ + + P
Sbjct: 53 TDAASAIEALDGKDFGGRNLRVNEAQERKERP 84
>gi|167376798|ref|XP_001734154.1| 29 kDa ribonucleoprotein B, chloroplast precursor [Entamoeba dispar
SAW760]
gi|165904519|gb|EDR29735.1| 29 kDa ribonucleoprotein B, chloroplast precursor, putative
[Entamoeba dispar SAW760]
Length = 229
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+LY+GN+ + TE+ N + H + ++ + + FAF+E+ + ++
Sbjct: 3 KLYIGNLSYKTTEE------NLKTHFESFGKIKEAKLMVFR-GYSRGFAFVEYETEEDAK 55
Query: 108 QAMAFDGINFKGQSLKI 124
+A+A +G+ F+G+ LK+
Sbjct: 56 KAVAANGVEFEGRKLKV 72
>gi|294891190|ref|XP_002773465.1| Eukaryotic translation initiation factor 4H, putative [Perkinsus
marinus ATCC 50983]
gi|239878618|gb|EER05281.1| Eukaryotic translation initiation factor 4H, putative [Perkinsus
marinus ATCC 50983]
Length = 363
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 49 LYVGNIPFGVTEDEMMEFF-NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+YVG +P+ +EDE+ FF ++ + G+ ++ + K F +L+F ++++
Sbjct: 67 VYVGGLPYSASEDELGFFFLDRNITPVGV-----RIIMDRETKKSKGFGYLDFATVEDYE 121
Query: 108 QAMAFDGINFKGQSLKI 124
A+ +G NF G+++K+
Sbjct: 122 AALGMNGSNFGGRTIKV 138
>gi|50552626|ref|XP_503723.1| YALI0E09174p [Yarrowia lipolytica]
gi|49649592|emb|CAG79313.1| YALI0E09174p [Yarrowia lipolytica CLIB122]
Length = 253
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 29/120 (24%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEF 100
R +YVG+IP+ TE++M++ F + PV++ ++ DK + F E+
Sbjct: 4 RVVYVGSIPYDQTEEQMLDIFK-----------SVGPVISLKLMFDKETGRSKGYGFAEY 52
Query: 101 RSIDETTQAMA-FDGINFKGQSLKIRRPHDYQ-----------PTPGVTDNAAVAVPAGV 148
D A+ +G + L++ H+ Q P P V+ N +PAGV
Sbjct: 53 PDADTARSAIRNLNGFQVGSRQLRVDHSHEGQVREFFASQNRFPNPNVSKNGRPGLPAGV 112
>gi|341893358|gb|EGT49293.1| hypothetical protein CAEBREN_16941 [Caenorhabditis brenneri]
Length = 401
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRS 102
++VGN+PF +TED ++ FF++Q+ PV +I DK+ FAF+ F+
Sbjct: 255 IFVGNLPFEITEDALITFFSEQI----------GPVEGVRIVRDKDTGKGKGFAFVNFKQ 304
Query: 103 IDETTQAMAFDGINFKGQSLKI 124
+ A++ + I + + L++
Sbjct: 305 DSSVSLALSMETIKMEKRDLRL 326
>gi|406700293|gb|EKD03465.1| hypothetical protein A1Q2_02183 [Trichosporon asahii var. asahii
CBS 8904]
Length = 445
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 25/162 (15%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 109
+VGN+ F V +DE+ +FF + +S ++ K F ++EF S D+ A
Sbjct: 68 FVGNLTFEVQDDEVRDFFAELKPISVR-------LVKDSEGKAKGFGYVEFGSRDDLKNA 120
Query: 110 MAFDGINFKGQSLKI------RRP-HDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFI 162
+ G N G++++I RP +Y TP D A+ ++ P +P + F
Sbjct: 121 LDLTGQNLGGRTVRINVAEAPSRPGREY--TPSAADEASQWRRTAPLAPREPPAPRRTFS 178
Query: 163 GGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
G ++D+ G K R S G G++
Sbjct: 179 GA----SHDDRDWGAARGA-----KFTPSRESSGYGRPRGER 211
>gi|429328163|gb|AFZ79923.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 570
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+Y G +P VTEDE+ E F PV + K AF+ F+ + +
Sbjct: 323 IYCGGLPTTVTEDELRELFETDC----------GPVARINLIQRKGVAFITFKDEESAAK 372
Query: 109 AMAFDGINFKGQSLKIRRPHDYQPTP 134
A+ FD ++ G L+I D Q P
Sbjct: 373 AVEFDKTSYMGNPLRINITADRQKQP 398
>gi|325191168|emb|CCA25956.1| Poly(U)bindingsplicing factor PUF60 putative [Albugo laibachii
Nc14]
Length = 454
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFN--QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
A+RLYVGN+ + + ED++ F +H L+ G K F FLEF +
Sbjct: 135 AKRLYVGNLYYELKEDDIRNVFAPFGAIHSIDLSMEPGT-------GRSKGFCFLEFNDV 187
Query: 104 DETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK-IF 161
A+ +G +++K+ RPH P ++ AAV + I V P K ++
Sbjct: 188 LAAESAVQVLNGSTMANRAIKVGRPHRGNQNPKDSE-AAVNIGKEAIRNV----PTKCVY 242
Query: 162 IGGLPNYLN 170
IGG+ LN
Sbjct: 243 IGGVRTELN 251
>gi|294890713|ref|XP_002773277.1| hypothetical protein Pmar_PMAR026527 [Perkinsus marinus ATCC 50983]
gi|239878329|gb|EER05093.1| hypothetical protein Pmar_PMAR026527 [Perkinsus marinus ATCC 50983]
Length = 683
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMM-EFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
R R LYVGN+ GV +++ + F L A G PVL +I D FAF+EF+
Sbjct: 557 RTQRELYVGNLAIGVVTPQVLHKLFEPACKVLPDYDPALGPPVLQAEIRGDGRFAFVEFQ 616
Query: 102 SIDETTQAMA-FDGINFKGQSLKIRRPHDYQPTP 134
+ T A++ F+G++ + R D +PTP
Sbjct: 617 NDRLATAALSIFNGVSMRADG-STRAALDREPTP 649
>gi|345321135|ref|XP_003430388.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2
[Ornithorhynchus anatinus]
Length = 338
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 203 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 256
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
+MA D F+G+ +K+ +P TD
Sbjct: 257 SVRTSMALDESLFRGRQIKVIPKRTNRPGISTTDR 291
>gi|226288775|gb|EEH44287.1| hypothetical protein PADG_00576 [Paracoccidioides brasiliensis
Pb18]
Length = 303
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLY+GN+P VT+ E+ + FN H SG +I L F F+E+ +
Sbjct: 8 RLYLGNLPRNVTKQEIEDHFNSH-HGSG---------KITEIKLMSGFGFIEYEDAMDAK 57
Query: 108 QAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+ DG +FKG+ L + R P + G D ++ P I +++ I G
Sbjct: 58 DVVP-DGTDFKGERLTVQFARGPRHKETFSGPPDRSSAPRPRRTI--------YRMQISG 108
Query: 165 LPN 167
LP
Sbjct: 109 LPE 111
>gi|47213059|emb|CAF93812.1| unnamed protein product [Tetraodon nigroviridis]
Length = 220
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 97 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKE 150
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
AMA D F+G+ +K+ +P TD
Sbjct: 151 SVRTAMALDESLFRGRQIKVVAKRTNRPGISTTDR 185
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 31 AAAAVP----VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA 86
A AVP + S +T+ R+++VG +P TE++ ME+F + H+ + +
Sbjct: 121 AKKAVPKAEYITRSQVTKPTRKIFVGGLPLSCTEEDFMEYFERLGHV-----VEAHIMYD 175
Query: 87 CQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRR 126
Q + + F F+ F S D + KG+ +++++
Sbjct: 176 HQTGISRGFGFVTFSSEDMVEKVFEQSQHEIKGKIVEVKK 215
>gi|302891931|ref|XP_003044847.1| hypothetical protein NECHADRAFT_42935 [Nectria haematococca mpVI
77-13-4]
gi|256725772|gb|EEU39134.1| hypothetical protein NECHADRAFT_42935 [Nectria haematococca mpVI
77-13-4]
Length = 566
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 109
++GN+ + VT D + +FF +G + + ++ K F ++EF +++ QA
Sbjct: 100 HLGNLAYDVTNDAVTDFF------TGCDVVSVRLIEDRELQRPKGFGYVEFATVEGLKQA 153
Query: 110 MAFDGINFKGQSLKIR 125
+A DG +F+G++++I+
Sbjct: 154 LALDGESFQGRTVRIK 169
>gi|391328788|ref|XP_003738866.1| PREDICTED: polyadenylate-binding protein 2-like [Metaseiulus
occidentalis]
Length = 193
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 68 RSIYVGNVDYGATAEEL------EQHFHGCGSVNRVTILCDKFSGHPKGFAYIEFADKDS 121
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 122 VETAMAMDDSLFRGRQIKV 140
>gi|255572397|ref|XP_002527136.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223533496|gb|EEF35238.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 642
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 38/165 (23%)
Query: 22 IPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG 81
P+ T P V ST ++ L+VGN+PF V ++ +FF + AG
Sbjct: 365 TPQATTKKPKTPVTPQVQSTGSKT---LFVGNLPFQVERADVEDFF----------KGAG 411
Query: 82 NPVLACQINLD-----KNFAFLEFRSIDETTQAMAFDGINFKGQSLKI--------RRPH 128
V+ + LD K F +EF +I+ +A+ +G + G+ +++ R P
Sbjct: 412 E-VVDVRFALDQDQRFKGFGHVEFATIEAAHEALKLNGQSLNGREVRLDLARERGERAP- 469
Query: 129 DYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
Y P G DN+ G T KIF+ G +L ED+
Sbjct: 470 -YTPYSG-KDNSFQK--GGRSQT------QKIFVRGFDKFLGEDE 504
>gi|322695955|gb|EFY87755.1| putative MRD1 [Metarhizium acridum CQMa 102]
gi|326633449|gb|ADZ99447.1| pre-rRNA processing protein [Metarhizium anisopliae]
gi|326633451|gb|ADZ99448.1| pre-rRNA processing protein [Metarhizium anisopliae]
Length = 841
Score = 43.5 bits (101), Expect = 0.077, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 21 IIPETT--VAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQ 78
+ P+TT V + A S I R +R L+V N+P+ TED++ E F++ G Q
Sbjct: 288 VTPDTTADVTTSKETATEDAVSAIARTSR-LFVRNLPYSATEDDIWETFDK----FGTLQ 342
Query: 79 AAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVT 137
P+ A + K FA + F + +A A DG+ F+G+ L I P D + G+
Sbjct: 343 EVHLPLTASRAT--KGFAMVLFTDSSDAVRAFQALDGVTFQGRILHI-IPADAKREQGLD 399
Query: 138 DNAAVAVP 145
+ +P
Sbjct: 400 EFGVSKLP 407
>gi|449268380|gb|EMC79248.1| Nucleolin [Columba livia]
Length = 648
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R AR L+V N+P+ +TEDEM + F + + + GN K A++EF++
Sbjct: 320 RDARTLFVKNLPYRLTEDEMKDVFENALEIRIVMNKEGN---------SKGMAYIEFKTE 370
Query: 104 DETTQAM 110
E +A+
Sbjct: 371 AEANKAL 377
>gi|410908757|ref|XP_003967857.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Takifugu
rubripes]
Length = 284
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 97 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKE 150
Query: 105 ETTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 151 SVRTAMALDESLFRGRQIKV 170
>gi|145509463|ref|XP_001440670.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407898|emb|CAK73273.1| unnamed protein product [Paramecium tetraurelia]
Length = 1103
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 41 TITRQARRLYVGNIPFGVTED----EMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFA 96
++T + RR+ + NIP G+T E+ F N+ +L+ + A P+L C +N
Sbjct: 799 SLTSRMRRIQICNIPTGLTNRDLYAELSRFMNRN-YLNDVGNA--KPILYCHLNEKDRTC 855
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
LE S++E+ + + + I +S KI R D
Sbjct: 856 TLELSSVEESNRMLKLEEIKLLDESCKIFRLGD 888
>gi|220905189|ref|YP_002480501.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869488|gb|ACL49823.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 88
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-----LDKNFAFLEFRSI 103
+YVGN+P+ TED + + F+ A G+P+ I+ + F F+E
Sbjct: 5 IYVGNLPWSATEDAVRDLFS----------AHGDPISVKLISDRETGRARGFGFVEMEDD 54
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
+ A +G++F G++L++ + + +P P
Sbjct: 55 EAQNAISALNGMDFGGRALRVNKAEERRPAP 85
>gi|358377715|gb|EHK15398.1| hypothetical protein TRIVIDRAFT_38353 [Trichoderma virens Gv29-8]
Length = 324
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 35/146 (23%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-----FAFLEFRS 102
RL V NI + +TE+++ E F + P+ Q+ D++ AF+ + S
Sbjct: 91 RLRVENIHYDLTEEDLDELFRRI-----------GPITKLQLRYDRSGRSEGVAFVTYES 139
Query: 103 IDETTQAMA-FDGINFKGQSLKI--------RRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
D+ +A+ FDG N GQ +++ R P D PG + ++ P G ++
Sbjct: 140 KDDAAEAVRQFDGANANGQPIRLTVMPSGPSRNPFDTAVMPGKPLSERISAPGGRSRSLS 199
Query: 154 PDSPHKIFIGGLPNYLNEDQAIAGLN 179
P P + Y ED A G++
Sbjct: 200 P--PRR--------YDEEDAARRGID 215
>gi|367043706|ref|XP_003652233.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
gi|346999495|gb|AEO65897.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
Length = 533
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QA 79
++T A AA G I+ ++ L+VGN+ F E+ + FFN+ + L Q
Sbjct: 370 DSTPNARAAERARKHGDVISPESDTLFVGNLSFSANEESVSAFFNKVAKVQSLRIPTDQE 429
Query: 80 AGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ--SLKIRRPHD 129
+G P K FA++ F S+D+ A A +G + G+ L +P D
Sbjct: 430 SGRP---------KGFAYVTFSSVDDAKAAFEALNGSDLDGRPVRLDFAKPRD 473
>gi|212528572|ref|XP_002144443.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
gi|210073841|gb|EEA27928.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
Length = 728
Score = 43.1 bits (100), Expect = 0.081, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R L+V ++P T +++ EFF+Q L V+ + K + F+ F I++
Sbjct: 47 RELFVRSLPASATTEKLTEFFSQSYVLK-----HATVVIDPETKKSKGYGFVTFADIEDA 101
Query: 107 TQAM-AFDGINFKGQSLKI------RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
+A+ F+G +F+G+ +K+ +R D + V +V + A +P +
Sbjct: 102 QRALEEFNGADFEGRKIKVEVAQPRKREIDEKGGKSVPTAESVRLKAERTKEREQTAPPR 161
Query: 160 IFIGGLPNYLNEDQAIAGL 178
+ + LP + E +A L
Sbjct: 162 LIVRNLPWTIKESDQLAAL 180
>gi|407044727|gb|EKE42787.1| enhancer binding protein-2, putative [Entamoeba nuttalli P19]
Length = 229
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+LY+GN+ + TE+ N + H + ++ + + FAF+E+ + ++
Sbjct: 3 KLYIGNLSYKTTEE------NLKTHFESFGKIKEAKLMIFR-GYSRGFAFVEYETEEDAK 55
Query: 108 QAMAFDGINFKGQSLKI 124
+A+A +G+ F+G+ LK+
Sbjct: 56 KAVAANGVEFEGRKLKV 72
>gi|358340157|dbj|GAA28424.2| polyadenylate-binding protein 2 [Clonorchis sinensis]
Length = 288
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Query: 47 RRLYVGNIPFGVTEDEMMEFF------NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 100
R +YVGN+ +G T DE+ F N+ L + G P K FA++EF
Sbjct: 86 RSVYVGNVDYGATADELEAHFRACGPINRVTILCN--KYTGQP---------KGFAYIEF 134
Query: 101 RSIDETTQAMAFDGINFKGQSLKI 124
+ D AMA D NF+ ++LK+
Sbjct: 135 DTRDAVEAAMALDESNFRNRALKV 158
>gi|294868712|ref|XP_002765657.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239865736|gb|EEQ98374.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 423
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 39 GSTITRQARRLYVGNIPFGVTE-DEMMEFFN-------QQMHLSGLAQAAGNPVLACQIN 90
G+ ++A+ LYVGN+ G + EFFN + H AG + +++
Sbjct: 130 GAGQNKKAKELYVGNLAKGQANVANVKEFFNTALTALPEYQHKYAHILPAGC-IREVRLS 188
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---PGVTDNAAVAVPAG 147
+ F+EF S + A+ FD + F G+ L+I RP Y P P D + + V
Sbjct: 189 PCGQYCFVEFASEEICLTALEFDRVEFLGRQLRIARPTGYTPLGPPPAPMDVSVLRVQGF 248
Query: 148 VISTVVPDSPHK 159
+ +P +P +
Sbjct: 249 LPQKAMPANPQQ 260
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 44 RQARRLYVGNIPFGV-TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
++ R YVGN+ GV T + + F L A G PVLA + + FAF+EF+
Sbjct: 262 KRQREAYVGNLALGVITPQVLKDLFEPACSVLPDYNSALGPPVLAADVRGEGRFAFVEFQ 321
Query: 102 SIDETTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
+ + A+ F+G+ G+ + + RP Y P A+P+G S ++
Sbjct: 322 NDRLCSAAIDIFNGMEVLGRRIVVGRPQGYVEPP-----EGAAIPSGQRSNML 369
>gi|164659450|ref|XP_001730849.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
gi|159104747|gb|EDP43635.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
Length = 549
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLEFRSID 104
RLYVGN+ + +T + F HL + V C ++ K FAF++FR++
Sbjct: 315 RLYVGNLHYDITSQHVRVVFEPFGHL--------DEVEVCYNHMTGKSKGFAFVQFRNVH 366
Query: 105 ETTQAMA-FDGINFKGQSLKI 124
E QAM +G G+++++
Sbjct: 367 EAKQAMEQLNGFELAGRAMRV 387
>gi|357473075|ref|XP_003606822.1| Flowering time control protein FPA [Medicago truncatula]
gi|355507877|gb|AES89019.1| Flowering time control protein FPA [Medicago truncatula]
Length = 973
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+ LYV N+ VT+ ++M+ F Q L + + +N+AF+ F+ ID+
Sbjct: 26 SNNLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSA-----------RNYAFVFFKRIDD 74
Query: 106 TTQAM-AFDGINFKGQSLKI 124
A A G NF+G SL+I
Sbjct: 75 AKAAKNALQGFNFRGNSLRI 94
>gi|157311739|ref|NP_001098602.1| polyadenylate-binding protein nuclear 1 isoform 2 [Danio rerio]
gi|166158019|ref|NP_001107419.1| uncharacterized protein LOC100135259 [Xenopus (Silurana)
tropicalis]
gi|156914711|gb|AAI52624.1| Pabpn1 protein [Danio rerio]
gi|158253845|gb|AAI54029.1| Poly(A) binding protein, nuclear 1 [Danio rerio]
gi|163915712|gb|AAI57544.1| LOC100135259 protein [Xenopus (Silurana) tropicalis]
Length = 232
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 34 AVPVVGS---TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
A PV+ S I R +YVGN+ +G T +E+ + H G +L +
Sbjct: 82 AGPVIMSIEEKIEADGRSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFT 135
Query: 91 LD-KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
K FA++EF + AMA D F+G+ +K+ +P TD
Sbjct: 136 GHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDR 185
>gi|411119198|ref|ZP_11391578.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410711061|gb|EKQ68568.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 104
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 20/95 (21%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRS 102
+YVGN+ F VTED+++E F++ V++ Q+ D+ FAF+E S
Sbjct: 3 VYVGNLSFKVTEDDLVETFSEY-----------GKVVSVQLPKDRETGRMRGFAFVEMSS 51
Query: 103 IDETTQAM-AFDGINFKGQSLKIR--RPHDYQPTP 134
E A+ A DG + G+ LK+ +P + + +P
Sbjct: 52 ETEEAAAIDALDGAEWMGRDLKVNKAKPREERRSP 86
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLE 99
ARRLYVGNIP VT +E L+ + Q G V ++ DK FAF+
Sbjct: 69 ARRLYVGNIPRTVTNEE----------LAKIVQEHG-AVEKAEVMYDKYSGRSRRFAFVT 117
Query: 100 FRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPH 158
+++++ T + +G G+ +K+ TP + A + I DSPH
Sbjct: 118 MKTVEDATAVIEKLNGTEIGGREVKVNVTEKPLSTPDLP--LLQAEESEFI-----DSPH 170
Query: 159 KIFIGGLPNYLNED 172
K+++G L + D
Sbjct: 171 KVYVGNLAKTVTTD 184
>gi|303317336|ref|XP_003068670.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108351|gb|EER26525.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 300
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLY+GN+P VT+ ++ E FNQ H SG I L F F+E+ +
Sbjct: 8 RLYLGNLPRNVTKQDVEEHFNQ--HGSG---------KITDIKLMSGFGFIEYEDALDAR 56
Query: 108 QAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+ DG +FKG L + R P + G +D + P +P+++ I G
Sbjct: 57 DVVP-DGTDFKGSRLTVQFARGPRHKETFSGPSDRSNAPRPRR--------TPYRMQISG 107
Query: 165 LPN 167
LP
Sbjct: 108 LPE 110
>gi|410908755|ref|XP_003967856.1| PREDICTED: polyadenylate-binding protein 2-like isoform 1 [Takifugu
rubripes]
Length = 232
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 97 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKE 150
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
AMA D F+G+ +K+ +P TD
Sbjct: 151 SVRTAMALDESLFRGRQIKVVAKRTNRPGISTTDR 185
>gi|159480766|ref|XP_001698453.1| hypothetical protein CHLREDRAFT_187814 [Chlamydomonas reinhardtii]
gi|158282193|gb|EDP07946.1| predicted protein [Chlamydomonas reinhardtii]
Length = 434
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 17/92 (18%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-----FAFLEFRSI 103
+YVGN+ F V E E+ + F ++ AG +++ DKN FA + F +
Sbjct: 250 VYVGNVSFEVGEPELRKLFKER---------AGVEPSEVRLHKDKNGRPKGFAHVHFAND 300
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
D+ +A+A +G+ F+ ++++I QP PG
Sbjct: 301 DDVDKAVALNGLEFEDRNIRISYA---QPKPG 329
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 17/92 (18%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSI 103
+YVGN+ F V E E+ + F ++ AG +++ D K FA + F +
Sbjct: 352 VYVGNVSFEVGEPELRKLFKER---------AGVEPSEVRLHKDKAGRSKGFAHVHFAND 402
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
++ +A+A +G+ F+ ++++I QP PG
Sbjct: 403 NDVDKAVALNGLEFEDRNIRISYA---QPKPG 431
>gi|444510679|gb|ELV09695.1| Splicing regulatory glutamine/lysine-rich protein 1 [Tupaia
chinensis]
Length = 592
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMME 65
+ G IPA + P T P++G S I R +YVGN+ T D+++E
Sbjct: 108 SSLGAIPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 166
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FF Q + + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 167 FFKQVGEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 218
>gi|389609797|dbj|BAM18510.1| glycine rich RNA binding protein, putative [Papilio xuthus]
Length = 218
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFA 96
+ I R +YVGN+ +G T +E+ + H G +L + + K FA
Sbjct: 88 IEEKIEADNRSVYVGNVDYGATAEEL------EQHFHGCGSINRVTILCNKFDGHPKGFA 141
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKI 124
++EF D AMA D F+G+ +K+
Sbjct: 142 YIEFGDKDSVQTAMAMDESLFRGRQIKV 169
>gi|281207997|gb|EFA82175.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 261
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
LYV NIPF V D+++E F + A A + V + N K F F+EF + + +
Sbjct: 193 LYVTNIPFSVGNDQLLEIFKE------YAPKAAHIVFNTRFNKSKGFGFVEFNNSADQQK 246
Query: 109 AMAFD 113
A+A +
Sbjct: 247 ALALN 251
>gi|340520210|gb|EGR50447.1| predicted protein [Trichoderma reesei QM6a]
Length = 323
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 35/146 (23%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-----FAFLEFRS 102
RL V NI + +TE+++ E F + P+ Q+ D++ AF+ + S
Sbjct: 90 RLRVENIHYDLTEEDLDELFRRI-----------GPITKLQLRYDRSGRSEGVAFVTYES 138
Query: 103 IDETTQAMA-FDGINFKGQSLKI--------RRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
+ +A+ FDG N GQ +++ R P D PG + ++ P G ++
Sbjct: 139 SSDAAEAVRQFDGANANGQPIRLTILSGGPSRNPFDTAVMPGKPLSERISAPGGRSRSL- 197
Query: 154 PDSPHKIFIGGLPNYLNEDQAIAGLN 179
SPH+ Y ED A G++
Sbjct: 198 --SPHR-------RYDEEDAARRGID 214
>gi|47086087|ref|NP_998424.1| polyadenylate-binding protein nuclear 1 isoform 1 [Danio rerio]
gi|46250394|gb|AAH68437.1| Zgc:85979 [Danio rerio]
gi|50925993|gb|AAH79522.1| Pabpn1 protein [Danio rerio]
gi|182889100|gb|AAI64644.1| Pabpn1 protein [Danio rerio]
Length = 284
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 34 AVPVVGS---TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
A PV+ S I R +YVGN+ +G T +E+ + H G +L +
Sbjct: 82 AGPVIMSIEEKIEADGRSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFT 135
Query: 91 LD-KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
K FA++EF + AMA D F+G+ +K+ +P TD
Sbjct: 136 GHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDR 185
>gi|357168503|ref|XP_003581679.1| PREDICTED: uncharacterized protein LOC100838448 [Brachypodium
distachyon]
Length = 741
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 35 VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN 94
P S T ++ L+VGN+ + V +++ EFF + +A+ + K
Sbjct: 461 TPASSSEATTGSKTLFVGNLSYSVGIEQVKEFFQE------VAEVVDVRFATFEDGSSKG 514
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVIST 151
FA +EF + + +A +G + G+ +++ R Y P G DN++ P S
Sbjct: 515 FAHVEFATTEAVHKARELNGHDLMGRPVRLDLARERGAYTPGSG-RDNSSFKKPGQSSSN 573
Query: 152 VVPDSPHKIFIGGLPNYLNEDQAIAGL 178
FI G L EDQ + L
Sbjct: 574 TA-------FIRGFDASLGEDQIRSSL 593
>gi|88603697|ref|YP_503875.1| RNA recognition motif-containing protein [Methanospirillum hungatei
JF-1]
gi|88189159|gb|ABD42156.1| RNA-binding region RNP-1 (RNA recognition motif) [Methanospirillum
hungatei JF-1]
Length = 105
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 16/91 (17%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
+ +RLYVGN+ + V ED++ + F+Q V++ +I K F F+E + +
Sbjct: 2 EGKRLYVGNLTYSVKEDQLKDLFSQY-----------GDVVSVKIIEQKGFGFVEMGTSE 50
Query: 105 ETTQAMAFDGIN---FKGQSLKIRRPHDYQP 132
E AM D +N F+G++++I QP
Sbjct: 51 EAQAAM--DALNQTVFEGRTMRIDEARPMQP 79
>gi|321479154|gb|EFX90110.1| hypothetical protein DAPPUDRAFT_299933 [Daphnia pulex]
Length = 381
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNF 95
I + R ++VGNIP+ VTE+++ + F++ PV++ +I D K +
Sbjct: 9 IDKSLRSVFVGNIPYDVTEEKLKDIFSE-----------AGPVVSFKIVYDRETGKPKGY 57
Query: 96 AFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F E+R + AM +G G++L++
Sbjct: 58 GFCEYRDQETALCAMRNLNGYEIAGRTLRV 87
>gi|268532218|ref|XP_002631237.1| C. briggsae CBR-RSP-7 protein [Caenorhabditis briggsae]
Length = 446
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
R +YVGN+P G+ E+++ FN + + A+G L C +A++EF
Sbjct: 163 RTVYVGNLPKGIDGKEVLDLFNMYFGEVMYVRMASGPDALPCA------YAYVEFSQQAS 216
Query: 106 TTQAMAFDGINFKGQSLKIR 125
+ A+ DG FK + LKI+
Sbjct: 217 VSNALQNDGFEFKERPLKIQ 236
>gi|284108895|ref|ZP_06386469.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829840|gb|EFC34132.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
Length = 90
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
+++YVGN+ + T+ E+ + F Q G Q+A N V + F F+E S +E
Sbjct: 3 QKIYVGNLSYSTTDQELQDLFAQH----GTVQSA-NVVTDRYTGRSRGFGFVEMGSGEEA 57
Query: 107 TQAM-AFDGINFKGQSLKIR--RPHDYQPTP 134
QA+ A +G +F+G+SL + RP + P
Sbjct: 58 GQAIEALNGTDFQGRSLVVNEARPKEKSFRP 88
>gi|168043399|ref|XP_001774172.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674440|gb|EDQ60948.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 240
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 20/131 (15%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAF 97
+R +R +YVGN+P V E E+ + F + + I+L + F
Sbjct: 3 SRASRTIYVGNLPGDVREREIEDIFYKYGRI-------------VDIDLKLPPRPPGYCF 49
Query: 98 LEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDS 156
LEF + A+ DG NF G L++ H + P D +A A G V S
Sbjct: 50 LEFEDARDAEDAIRGRDGYNFDGNRLRVEIAHGGRGPPPAVDRSA-AESGGRAGGVSRRS 108
Query: 157 PHKIFIGGLPN 167
+++ + GLP+
Sbjct: 109 EYRVMVTGLPS 119
>gi|389614949|dbj|BAM20476.1| glycine rich RNA binding protein, putative [Papilio polytes]
Length = 218
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFA 96
+ I R +YVGN+ +G T +E+ + H G +L + + K FA
Sbjct: 88 IEEKIEADNRSVYVGNVDYGATAEEL------EQHFHGCGSINRVTILCNKFDGHPKGFA 141
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKI 124
++EF D AMA D F+G+ +K+
Sbjct: 142 YIEFGDKDSVQTAMAMDESLFRGRQIKV 169
>gi|384249082|gb|EIE22564.1| hypothetical protein COCSUDRAFT_63712 [Coccomyxa subellipsoidea
C-169]
Length = 557
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLE 99
AR ++VGN+PF ++E++E F G + V A +I D K AF+E
Sbjct: 351 ARSVFVGNLPFDTQDEELIELF-------GDGKGGPGNVTAVRIVRDPKTSVGKGIAFVE 403
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRR 126
F AM+ DG +G+ +++ R
Sbjct: 404 FSGRPAARMAMSADGRVLRGRQIRVAR 430
>gi|426236529|ref|XP_004012220.1| PREDICTED: LOW QUALITY PROTEIN: paraspeckle component 1 [Ovis
aries]
Length = 483
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 27 VAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA 86
+ +AA + G Q RL+VGN+P +TED+ F + G P
Sbjct: 22 LESAAIKSFLKPGEKTYTQRCRLFVGNLPTDITEDDFKRLF----------ERYGEPSEV 71
Query: 87 CQINLDKNFAF--LEFRSIDETTQAMAFDGINFKGQSLKIR 125
IN D+ F F LE R++ E +A DG K + L+IR
Sbjct: 72 F-INRDRGFGFIRLESRTLAEIAKA-ELDGTILKSRPLRIR 110
>gi|327288080|ref|XP_003228756.1| PREDICTED: RNA-binding protein 7-like [Anolis carolinensis]
Length = 261
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD----- 92
+G+ R L+VGN+ GVTE+ + E F Q G PVL +I D
Sbjct: 1 MGAAAAEADRTLFVGNLDPGVTEELLFELFLQ-----------GGPVLNVKIPKDREGKA 49
Query: 93 KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K+FAF+ F+ + M+ +GI G+ LKI
Sbjct: 50 KSFAFVNFKHEESVPYGMSLLNGIKLFGRPLKI 82
>gi|67605110|ref|XP_666661.1| cutinase negative acting protein [Cryptosporidium hominis TU502]
gi|54657695|gb|EAL36429.1| cutinase negative acting protein [Cryptosporidium hominis]
Length = 475
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
+T + +R +Y GN+P+ TE+E+ F + + ++ VL+ DK AF+
Sbjct: 264 NTNNKDSREVYCGNLPYSCTEEEIRGLFEECGSIERVS------VLS-----DKGCAFIT 312
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
F + A+ ++ +KG+ L+I D +P PG
Sbjct: 313 FEQEEGAKSAIQWNQTEYKGRMLRINMSAD-KPQPG 347
>gi|209876590|ref|XP_002139737.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209555343|gb|EEA05388.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 377
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 21/87 (24%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R+++VGN+P G E ++ +FF++ +S ++ L + F F+E+ +E
Sbjct: 9 RKVFVGNLPAGYAEQDLRDFFSKVGTIS-------------KLELKQRFCFIEY---EEE 52
Query: 107 TQAMA----FDGINFKGQSLKIRRPHD 129
+QA A DG+ F GQ + + +PHD
Sbjct: 53 SQAEAAHRELDGVEFGGQRIAV-QPHD 78
>gi|395825410|ref|XP_003785928.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Otolemur garnettii]
Length = 617
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMME 65
+ G IPA + P T P++G S I R +YVGN+ T D+++E
Sbjct: 143 SSLGAIPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 201
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FF Q + + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 202 FFKQVGEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|159127852|gb|EDP52967.1| nucleolin protein Nsr1, putative [Aspergillus fumigatus A1163]
Length = 546
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKN 94
G + ++ L+VGNIPF ED + E F Q + G+ +G P K
Sbjct: 400 GDQTSPESDTLFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRP---------KG 450
Query: 95 FAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124
F +++F S+DE QA +G G+ +++
Sbjct: 451 FGYVQFSSVDEARQAFNDLNGAELNGRPVRL 481
>gi|159476716|ref|XP_001696457.1| poly(A) binding protein [Chlamydomonas reinhardtii]
gi|158282682|gb|EDP08434.1| poly(A) binding protein [Chlamydomonas reinhardtii]
Length = 136
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+R ++VGN+ +G T +E+ Q H + +L + K FA++EF +D
Sbjct: 53 SRSIFVGNVDYGCTPEEL------QQHFASCGTVNRVTILTDKFGNPKAFAYVEFLEVDA 106
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGV 136
A+ D +G+ +K+ H PG+
Sbjct: 107 VNNAVLLDNSELRGRQIKV--SHKRTNVPGL 135
>gi|119492702|ref|XP_001263670.1| ribonucleoprotein, chloroplast [Neosartorya fischeri NRRL 181]
gi|119411830|gb|EAW21773.1| ribonucleoprotein, chloroplast [Neosartorya fischeri NRRL 181]
Length = 533
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKNFAFLEFRSID 104
L+VGNIPF ED + E F Q + G+ +G P K F +++F S+D
Sbjct: 397 LFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRP---------KGFGYVQFSSVD 447
Query: 105 ETTQAM-AFDGINFKGQSLKI 124
E QA +G G+ +++
Sbjct: 448 EARQAFNDLNGAELNGRPVRL 468
>gi|425472294|ref|ZP_18851145.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9701]
gi|389881662|emb|CCI37811.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9701]
Length = 97
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+YVGN+PF V +++++E F + G + P + + + FAF+E + ++ +
Sbjct: 3 IYVGNLPFEVDQEDVVEVFKE----YGEIKRVHFP-MDRETKRKRGFAFVEMETPEQEAK 57
Query: 109 AM-AFDGINFKGQSLKIRRPHDYQPTP 134
A+ A DG + G+ LK+ + + +P P
Sbjct: 58 AIAALDGAQWMGRELKVNQAREREPKP 84
>gi|403179416|ref|XP_003888560.1| hypothetical protein PGTG_22688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164894|gb|EHS62806.1| hypothetical protein PGTG_22688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 541
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP 83
+T A ++ V + +T TR ++VGN+ F T E+ FF ++ L AG
Sbjct: 132 QTREAVTSSRKVESIFTTATRSKHGVWVGNLLFTTTAQELARFFEPAGKVTRLNMPAGK- 190
Query: 84 VLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
A + N FA+++F S + A+ G+ L I+R DY P
Sbjct: 191 -RAHEAN--SGFAYVDFDSAEAVDAALEKSECLLGGRKLLIKRSSDYSGRP 238
>gi|71000291|ref|XP_754840.1| nucleolin protein Nsr1 [Aspergillus fumigatus Af293]
gi|66852477|gb|EAL92802.1| nucleolin protein Nsr1, putative [Aspergillus fumigatus Af293]
Length = 546
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKN 94
G + ++ L+VGNIPF ED + E F Q + G+ +G P K
Sbjct: 400 GDQTSPESDTLFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRP---------KG 450
Query: 95 FAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124
F +++F S+DE QA +G G+ +++
Sbjct: 451 FGYVQFSSVDEARQAFNDLNGAELNGRPVRL 481
>gi|403343651|gb|EJY71156.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 491
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSID 104
+ L+VGN+ F TED + + F + ++ L Q G P K FAF+EF +
Sbjct: 240 KELFVGNLSFHTTEDSLGQAFGEYGTVTNVKLPQQDGRP---------KGFAFVEFATHK 290
Query: 105 ETTQAM-AFDGINFKGQSLKI 124
E A+ A++G +F+G++L+I
Sbjct: 291 EAQAALDAYNGQDFEGRALRI 311
>gi|297736736|emb|CBI25913.3| unnamed protein product [Vitis vinifera]
Length = 6467
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 41/97 (42%)
Query: 155 DSPHKIFIGGLPNYLNEDQ----------------------------------------- 173
+ P +IF+GGLP Y E+Q
Sbjct: 6235 EGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 6294
Query: 174 AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
A A LNG+++GDK L V+RA+VG+ A +Q + Q
Sbjct: 6295 ACAALNGLKMGDKTLTVRRATVGSGQAKSEQDNILAQ 6331
>gi|116786211|gb|ABK24023.1| unknown [Picea sitchensis]
Length = 302
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPV-LACQINLD----KNFAFLEFRS 102
++YVG IP+ ED++ FF + G + C D + A + F++
Sbjct: 77 KVYVGGIPYYSNEDDIRSFF----------EGCGTVTEVDCMTFPDSGKFRGIALISFKT 126
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFI 162
T+A+A DG + G+ LKI++ ++ + PAG + T V D ++ +I
Sbjct: 127 KAAATRALALDGADMGGRFLKIQQCRTHRSSKNDK-------PAGFVPTKV-DKSNRAYI 178
Query: 163 GGLPNYLNEDQ 173
G L + ED
Sbjct: 179 GNLAWDIAEDD 189
>gi|308477111|ref|XP_003100770.1| hypothetical protein CRE_15490 [Caenorhabditis remanei]
gi|308264582|gb|EFP08535.1| hypothetical protein CRE_15490 [Caenorhabditis remanei]
Length = 393
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
++VGN+PF +TED ++ FF +Q+ G +A V + K FAF+ F+ +
Sbjct: 247 IFVGNLPFDITEDALITFFTEQI---GQVEAV-RIVRDKATGVGKGFAFVNFKQDSSVSL 302
Query: 109 AMAFDGINFKGQSLKI 124
A++ + I + + L+I
Sbjct: 303 ALSMETIKMEKRDLRI 318
>gi|294897114|ref|XP_002775830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239882183|gb|EER07646.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 323
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R+L+VG IP G+T+D ++F+Q H+ C + F F+ + + DE
Sbjct: 78 RQLFVGGIPEGITDDGFHQYFSQFGHVERAIVMTDKMTGRC-----RGFGFVTYSTTDEV 132
Query: 107 TQAMAFDGIN-FKGQSLKIRRPHD-YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+ G + G+ + + R D P G + P S D P K+F GG
Sbjct: 133 EVVIMKGGPHQLNGKRVDVNRSQDPKDPHRGGWGSDRSGGP----SRRGGDDPMKVFCGG 188
Query: 165 LPNYLNEDQ 173
L + L+ ++
Sbjct: 189 LQSTLSSER 197
>gi|255550678|ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
gi|223544486|gb|EEF46005.1| splicing factor, putative [Ricinus communis]
Length = 609
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 19 NVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQ 78
N++ TTV A + P G ARRLYVGN+ F +TED++ + F + + L Q
Sbjct: 306 NLVQSTTTVNAGSG---PYSGG-----ARRLYVGNLHFNITEDQLRQVF-EPFGIVELVQ 356
Query: 79 AAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDG-INFKGQSLKI 124
+ C K F F++F +++ A+ +G + G+ +K+
Sbjct: 357 LPLDETGHC-----KGFGFVQFARLEDAKNALNLNGQVEIAGRPIKV 398
>gi|321460847|gb|EFX71885.1| hypothetical protein DAPPUDRAFT_93311 [Daphnia pulex]
Length = 81
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 18/83 (21%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRS 102
++VGNIP+GV+ED++ F++ AG PV++ +I D+ F F EF+S
Sbjct: 4 VFVGNIPYGVSEDQLKAIFSE----------AG-PVVSFRIVQDRETGRSRGFGFCEFQS 52
Query: 103 IDETTQAMA-FDGINFKGQSLKI 124
D AM +G G+SL++
Sbjct: 53 PDSAQTAMRNLNGYELNGRSLRV 75
>gi|348577533|ref|XP_003474538.1| PREDICTED: polyadenylate-binding protein 2-like [Cavia porcellus]
Length = 306
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 34 AVPVVGSTITR---QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
A PV+ S R AR +YVGN+ +G T +E+ + H G +L + +
Sbjct: 156 AGPVIMSIEERMEADARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFS 209
Query: 91 LD-KNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
K FA++EF + ++A D F+G+ +K+
Sbjct: 210 GHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 244
>gi|260892116|ref|YP_003238213.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
gi|260864257|gb|ACX51363.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
Length = 87
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLE 99
AR LYVGN+P+ +E+ E F +A VL+ +I +D+ F F+E
Sbjct: 2 ARTLYVGNLPWSTQAEELAEIF-----------SAYGEVLSSRIIVDRQTGRSRGFGFVE 50
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
R D A +G + G+ L + + Q P
Sbjct: 51 VRDEDAEAMIRALNGAEYGGRVLVVNEARERQSRP 85
>gi|223940412|ref|ZP_03632265.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223890907|gb|EEF57415.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 118
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 20/96 (20%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLE 99
A +L+VGN+PF TE+++ Q H SG AG V+A I D + FAF+E
Sbjct: 2 ATKLFVGNLPFSTTENDL------QDHFSG----AGT-VIAVNIMQDRATGRSRGFAFIE 50
Query: 100 FRSIDETTQAMA-FDGINFKGQSLKIR--RPHDYQP 132
S E A+A + G F+G++L + RP + +P
Sbjct: 51 MGSQAEADAAVAQYHGKEFQGRALTVNEARPREERP 86
>gi|448113963|ref|XP_004202460.1| Piso0_001296 [Millerozyma farinosa CBS 7064]
gi|359383328|emb|CCE79244.1| Piso0_001296 [Millerozyma farinosa CBS 7064]
Length = 211
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 26/90 (28%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSG----------LAQAAGNPVLACQINLDKNF 95
+R +YVGN+ +G T E+ Q H SG L + +G+P K F
Sbjct: 88 SRSIYVGNVDYGATPLEL------QQHFSGCGVVNRVTIPLNKFSGSP---------KGF 132
Query: 96 AFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
A+LEF ID +A+A DG F+ + +K+
Sbjct: 133 AYLEFGDIDAVNKAIATLDGSTFRDREIKV 162
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLE 99
A RLYVGN+P+ +T + E F + AG V + +I D + FAF+
Sbjct: 104 AGRLYVGNLPYSITNSALAELFGE----------AGT-VASVEIMYDRVTDRSRGFAFVT 152
Query: 100 FRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPH 158
++++ +A+ FDG G+++K+ P P + + DSPH
Sbjct: 153 MGNVEDAKEAIRMFDGSQVGGRTVKVNFPE----VPKGGERLVMGSKIRNSYRGFVDSPH 208
Query: 159 KIFIGGL 165
KI+ G L
Sbjct: 209 KIYAGNL 215
>gi|340914665|gb|EGS18006.1| hypothetical protein CTHT_0060190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 539
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKN 94
G I+ ++ L+VGN+ F TE+ + EFFN + L Q +G P K
Sbjct: 402 GDVISPESDTLFVGNLSFNATEESVSEFFNSVAAVQSLRIPTDQESGRP---------KG 452
Query: 95 FAFLEFRSIDETTQAM-AFDGINFKGQ--SLKIRRPHD 129
FA++ F S+++ A +G N G+ L +P D
Sbjct: 453 FAYVTFNSVEDAKTAFNQLNGSNLDGRPVRLDFAKPRD 490
>gi|85111281|ref|XP_963862.1| hypothetical protein NCU03092 [Neurospora crassa OR74A]
gi|28925605|gb|EAA34626.1| predicted protein [Neurospora crassa OR74A]
Length = 428
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKN 94
G TI+ ++ L+VGN+PF E + +FFN ++ L Q +G P K
Sbjct: 276 GDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQESGRP---------KG 326
Query: 95 FAFLEFRSIDETTQAMA-FDGINFKGQSLKIR--RPHD 129
FA++ F S+++ A +G + G+ +++ +P D
Sbjct: 327 FAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLDYAKPRD 364
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDETT 107
+YVGN+P+ +TED + E F Q + V+ QI+ K FAF++ + +E
Sbjct: 3 IYVGNLPYSITEDSLRELFEQ------FGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGE 56
Query: 108 QAM-AFDGINFKGQSL-----KIRRPHDYQPTPG 135
A+ +G G+++ K R P D +P G
Sbjct: 57 AAIEKLNGHELDGRTIVVNKAKPRAPRDSKPRSG 90
>gi|291575265|gb|ADE10198.1| ePABP2 [Cynoglossus semilaevis]
Length = 260
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 23 PETTVAAAAAAAVPVVGST----ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQ 78
PE + ++ P T I R +YVGN+ +G T DE+ FN
Sbjct: 52 PEMHLVTSSPHPAPFYNMTPEERIDADNRSIYVGNVDYGATADELEIHFN---------- 101
Query: 79 AAGNPVLACQINLD------KNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
A PV I D K FA++EF D A+ F+G+ LK+
Sbjct: 102 -ACGPVNRVTILCDRFSGHPKGFAYIEFSDRDSVQSAIGLHETLFRGRVLKV 152
>gi|388500070|gb|AFK38101.1| unknown [Lotus japonicus]
gi|388508218|gb|AFK42175.1| unknown [Lotus japonicus]
Length = 373
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQ-INLDKNFAFLEFRSI 103
+ ++++VG IP VTEDE +FF + + N ++ N + F F+ F S
Sbjct: 131 KTKKIFVGGIPSNVTEDEFRDFFTR------YGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
Query: 104 DETTQAMAF-DGINFKGQSLKIRRPHDYQPTP 134
D ++ + I+F G ++I++ +P P
Sbjct: 185 DAVDDLLSMGNKIDFAGTQVEIKKAEPKKPNP 216
>gi|291403571|ref|XP_002717950.1| PREDICTED: poly(A) binding protein, nuclear 1-like [Oryctolagus
cuniculus]
Length = 366
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 34 AVPVVGSTITR---QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
A PV+ S R AR +YVGN+ +G T +E+ + H G +L + +
Sbjct: 216 AGPVIMSIEERMEADARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFS 269
Query: 91 LD-KNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
K FA++EF + ++A D F+G+ +K+
Sbjct: 270 GHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 304
>gi|432884719|ref|XP_004074556.1| PREDICTED: uncharacterized protein LOC101155617 [Oryzias latipes]
Length = 445
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 3 VNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFG 57
+N ++N +AG P + +I A P++G S I R +YVGN+
Sbjct: 127 LNLPLVNRISAGLSPTSSVI----------AQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 176
Query: 58 VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
T D+++EFF Q + + AG+ + FAF+EF D +A+ F+G+ F
Sbjct: 177 TTADQLLEFFKQVGDVK-FVRMAGDETQPTR------FAFVEFVEQDSVARALTFNGVMF 229
Query: 118 KGQSLKI 124
+ LK+
Sbjct: 230 GDRPLKV 236
>gi|74007936|ref|XP_549135.2| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Canis
lupus familiaris]
Length = 597
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|17508587|ref|NP_493023.1| Protein R09B3.3 [Caenorhabditis elegans]
gi|3879016|emb|CAB03237.1| Protein R09B3.3 [Caenorhabditis elegans]
Length = 85
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 22/85 (25%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC--QINLDKNFAFLEF------ 100
+YVGN PF TED++ +F+Q ++S N + C + + FAF+EF
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVS-------NVRIVCDRETGRPRGFAFVEFTEEAAA 58
Query: 101 -RSIDETTQAMAFDGINFKGQSLKI 124
R++D+ F+G++F G++L++
Sbjct: 59 QRAVDQ------FNGVDFNGRALRV 77
>gi|196012776|ref|XP_002116250.1| hypothetical protein TRIADDRAFT_30657 [Trichoplax adhaerens]
gi|190581205|gb|EDV21283.1| hypothetical protein TRIADDRAFT_30657 [Trichoplax adhaerens]
Length = 139
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
AR +YVGN+ + T +E+ + H G +L + + K FA++EF
Sbjct: 9 DARSVYVGNVDYAATAEEL------EQHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 62
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
+ AMA D F+G+ +K+ +P TD
Sbjct: 63 ESVKTAMALDDSLFRGRQIKVSPKRTNRPGVSSTD 97
>gi|115497186|ref|NP_001068745.1| paraspeckle component 1 [Bos taurus]
gi|122145871|sp|Q1LZD9.1|PSPC1_BOVIN RecName: Full=Paraspeckle component 1
gi|94534895|gb|AAI16063.1| Paraspeckle component 1 [Bos taurus]
gi|296481730|tpg|DAA23845.1| TPA: paraspeckle component 1 [Bos taurus]
Length = 520
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TED+ F + G P IN D+ F F
Sbjct: 71 GEKTYTQRCRLFVGNLPTDITEDDFKRLFER----------YGEPSEVF-INRDRGFGFI 119
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 120 RLESRTLAEIAKA-ELDGTILKSRPLRIR 147
>gi|355681345|gb|AER96778.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Mustela
putorius furo]
Length = 582
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|449016079|dbj|BAM79481.1| similar to cleavage stimulation factor subunit 2 [Cyanidioschyzon
merolae strain 10D]
Length = 300
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------F 95
++R + +++GNIP+GVTED ++E Q PV++ +I DK +
Sbjct: 1 MSRGSCTVFIGNIPYGVTEDMLLERLQQV-----------GPVVSLRILYDKETGKPKGY 49
Query: 96 AFLEFRSIDETTQAMA--FDGINFKGQSLKI 124
F E+R + A+ + I F G+ L+I
Sbjct: 50 GFCEYRDPETAESAVRNLNERIEFGGRMLRI 80
>gi|403298766|ref|XP_003940178.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 597
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|332374616|gb|AEE62449.1| unknown [Dendroctonus ponderosae]
Length = 228
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 100 RSIYVGNVDYGATAEEL------EQHFHGCGSINRVTILCNRFDGHPKGFAYIEFGDRDS 153
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 154 VQTAMAMDESLFRGRQIKV 172
>gi|351709510|gb|EHB12429.1| Cleavage stimulation factor 64 kDa subunit [Heterocephalus glaber]
Length = 597
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|348570430|ref|XP_003471000.1| PREDICTED: cleavage stimulation factor subunit 2-like [Cavia
porcellus]
Length = 577
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLSVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|332861156|ref|XP_529072.3| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Pan
troglodytes]
gi|397478198|ref|XP_003810440.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Pan
paniscus]
gi|426396655|ref|XP_004064547.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Gorilla
gorilla gorilla]
Length = 597
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQ +++VGN+P + + E EFF Q + + G+ ++ + F F+ + +
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH----EVEKNAGFGFIIYAAE 217
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
+A+ FDG+ F G+ L ++
Sbjct: 218 KSAMKAVEFDGVEFHGRILTVK 239
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDK 93
G T+Q RR+YVGN+ + V E+ EF Q GN VL C+I L K
Sbjct: 69 GQKYTQQERRVYVGNLSYQVRWFELKEFMGQ----------VGN-VLNCEILNLPNGLSK 117
Query: 94 NFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
A +E+ + +E A+ F G+ + IR + G + + A G S
Sbjct: 118 GCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSE- 176
Query: 153 VPDSPHKIFIGGLP 166
PD ++F+G LP
Sbjct: 177 -PD--RQLFVGNLP 187
>gi|332254744|ref|XP_003276492.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2
[Nomascus leucogenys]
Length = 597
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|301788318|ref|XP_002929575.1| PREDICTED: cleavage stimulation factor subunit 2-like [Ailuropoda
melanoleuca]
Length = 582
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQ +++VGN+P + + E EFF Q + + G+ ++ + F F+ + +
Sbjct: 163 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH----EVEKNAGFGFIIYAAE 218
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
+A+ FDG+ F G+ L ++
Sbjct: 219 KSAMKAVEFDGVEFHGRILTVK 240
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQ +++VGN+P + + E EFF Q + + G+ ++ + F F+ + +
Sbjct: 160 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH----EVEKNAGFGFIIYAAE 215
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
+A+ FDG+ F G+ L ++
Sbjct: 216 KSAMKAVEFDGVEFHGRILTVK 237
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQ +++VGN+P + + E EFF Q + + G+ ++ + F F+ + +
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH----EVEKNAGFGFIIYAAE 217
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
+A+ FDG+ F G+ L ++
Sbjct: 218 KSAMKAVEFDGVEFHGRILTVK 239
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQ +++VGN+P + + E EFF Q + + G+ ++ + F F+ + +
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH----EVEKNAGFGFIIYAAE 217
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
+A+ FDG+ F G+ L ++
Sbjct: 218 KSAMKAVEFDGVEFHGRILTVK 239
>gi|296235968|ref|XP_002763125.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1
[Callithrix jacchus]
Length = 597
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|410988989|ref|XP_004000752.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
2 [Felis catus]
Length = 577
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|148909953|gb|ABR18062.1| unknown [Picea sitchensis]
Length = 331
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN---FAFLE 99
+R +R LYVGN+P + E E+ + F + P++ + + + F+E
Sbjct: 3 SRASRTLYVGNLPGDIREREVEDLFYKY-----------GPIVDIDLKIPPRPPGYCFIE 51
Query: 100 FRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVIS-TVVPDSP 157
F + A+ DG NF G L++ H + D + AG S V S
Sbjct: 52 FEDARDAEDAIRGRDGYNFDGNRLRVELAHGGRGQSSTNDRYSSYSSAGGRSGGVSRRSE 111
Query: 158 HKIFIGGLPN 167
+++ + GLP+
Sbjct: 112 YRVLVSGLPS 121
>gi|192764310|gb|ACF05699.1| betaCstF-64 variant 2 [Homo sapiens]
Length = 597
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|341884119|gb|EGT40054.1| hypothetical protein CAEBREN_26109 [Caenorhabditis brenneri]
Length = 401
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRS 102
++VGN+PF TED ++ FF++Q+ PV +I DK+ FAF+ F+
Sbjct: 255 IFVGNLPFETTEDALITFFSEQI----------GPVEGVRIVRDKDTGKGKGFAFVNFKQ 304
Query: 103 IDETTQAMAFDGINFKGQSLKI 124
+ A++ + I + + L++
Sbjct: 305 DSSVSLALSMETIKMEKRDLRL 326
>gi|347968945|ref|XP_001237407.3| AGAP002959-PA [Anopheles gambiae str. PEST]
gi|333467769|gb|EAU77058.3| AGAP002959-PA [Anopheles gambiae str. PEST]
Length = 913
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 38/139 (27%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQM--HLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
Q+R+++V N+ F VTE ++ E F + +A ++G + F +++ S
Sbjct: 667 QSRQVFVSNLSFEVTETDIREIFPDLAIESIELVASSSGK---------SRGFGYMQLAS 717
Query: 103 IDETTQAMAFDGINFKGQSL--------KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVP 154
+E +A++FD G+ + K RPH ++ +
Sbjct: 718 AEEVPKALSFDRRPLNGRPVFISNVARDKTTRPHQFKYSSSF------------------ 759
Query: 155 DSPHKIFIGGLPNYLNEDQ 173
P+K+FI GLP L +++
Sbjct: 760 -EPNKLFIKGLPFNLGQEE 777
>gi|296804902|ref|XP_002843299.1| U4/U6 snRNA-associated-splicing factor PRP24 [Arthroderma otae CBS
113480]
gi|238845901|gb|EEQ35563.1| U4/U6 snRNA-associated-splicing factor PRP24 [Arthroderma otae CBS
113480]
Length = 1278
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFA 96
V S + R +YV N+P+ TE +++E F G ++ P ++N + + FA
Sbjct: 958 VRSGAYEEGREIYVCNLPYKTTEGDLVELFTAY----GDVESVRIPT---KVNGETRGFA 1010
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKIR 125
F+ F + D++ A+A + FKG+ L +R
Sbjct: 1011 FVTFATKDQSNAALAMNEKTFKGRELNVR 1039
>gi|112983360|ref|NP_001037644.1| polyadenylate binding protein 2 [Bombyx mori]
gi|109706831|gb|ABG43002.1| polyadenylate binding protein 2 [Bombyx mori]
Length = 218
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFA 96
+ I R +YVGN+ +G T +E+ + H G +L + + K FA
Sbjct: 88 IEEKIEADNRSVYVGNVDYGATAEEL------EQHFHGCGSINRVTILCNKYDGHPKGFA 141
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKI 124
++EF D AMA D F+G+ +K+
Sbjct: 142 YIEFGDKDSVQTAMAMDESLFRGRQIKV 169
>gi|410929297|ref|XP_003978036.1| PREDICTED: uncharacterized protein LOC101067881 [Takifugu rubripes]
Length = 451
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 27 VAAAAAAAVPVVGS---TITRQARR-LYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAG 81
+AA+ ++ P++G+ T + RR +YVGN+ T D+++EFF +Q+ + AG
Sbjct: 141 LAASVSSQPPLMGNVDPTKVDEIRRTVYVGNLNSQTTTADQLLEFF-RQVGSVKFVRMAG 199
Query: 82 NPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + FAF+EF + +A+ F+G+ F + LKI
Sbjct: 200 DETQPTR------FAFVEFSEQESVARALTFNGVMFGDRPLKI 236
>gi|335306285|ref|XP_003360436.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Sus scrofa]
Length = 592
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|426257831|ref|XP_004022525.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Ovis
aries]
Length = 592
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|74007924|ref|XP_861405.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 5 [Canis
lupus familiaris]
Length = 577
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|291408103|ref|XP_002720432.1| PREDICTED: cleavage stimulation factor subunit 2 [Oryctolagus
cuniculus]
Length = 576
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|26336164|dbj|BAC31767.1| unnamed protein product [Mus musculus]
Length = 317
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 14 GQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFN 68
G IPA + P T P++G S I R +YVGN+ T D+++EFF
Sbjct: 10 GAIPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFK 68
Query: 69 QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
Q + + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 69 QVGEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 117
>gi|197100099|ref|NP_001125111.1| cleavage stimulation factor subunit 2 [Pongo abelii]
gi|71153230|sp|Q5RDA3.1|CSTF2_PONAB RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|55726993|emb|CAH90254.1| hypothetical protein [Pongo abelii]
Length = 577
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|332254742|ref|XP_003276491.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1
[Nomascus leucogenys]
Length = 577
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|297304342|ref|XP_001089558.2| PREDICTED: cleavage stimulation factor subunit 2-like [Macaca
mulatta]
gi|402910777|ref|XP_003918028.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 3 [Papio
anubis]
gi|355704983|gb|EHH30908.1| hypothetical protein EGK_20728 [Macaca mulatta]
gi|355757534|gb|EHH61059.1| hypothetical protein EGM_18986 [Macaca fascicularis]
Length = 597
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|374628484|ref|ZP_09700869.1| RNP-1 like RNA-binding protein [Methanoplanus limicola DSM 2279]
gi|373906597|gb|EHQ34701.1| RNP-1 like RNA-binding protein [Methanoplanus limicola DSM 2279]
Length = 83
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
++ ++YVGN+ VTE+E+ + F A +++ +I + FAF+E+ +I+
Sbjct: 2 ESHKVYVGNLAHYVTEEEIEDLF-----------AEFGDIMSVKIKPQEGFAFVEYSTIE 50
Query: 105 ETTQAM-AFDGINFKGQSLKIR 125
E A+ +G F G++LK+
Sbjct: 51 EAENAIHGTNGKEFSGRTLKVE 72
>gi|119224067|gb|AAI26544.1| CSTF2 protein [Bos taurus]
Length = 592
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|403298762|ref|XP_003940176.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403298764|ref|XP_003940177.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 577
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|4557493|ref|NP_001316.1| cleavage stimulation factor subunit 2 [Homo sapiens]
gi|332861154|ref|XP_003317595.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Pan
troglodytes]
gi|397478196|ref|XP_003810439.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Pan
paniscus]
gi|426396653|ref|XP_004064546.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Gorilla
gorilla gorilla]
gi|461847|sp|P33240.1|CSTF2_HUMAN RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|181139|gb|AAA35724.1| cleavage stimulation factor [Homo sapiens]
gi|17389334|gb|AAH17712.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Homo
sapiens]
gi|32879899|gb|AAP88780.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Homo
sapiens]
gi|61359609|gb|AAX41742.1| cleavage stimulation factor 3' pre-RNA subunit 2 [synthetic
construct]
gi|61359616|gb|AAX41743.1| cleavage stimulation factor 3' pre-RNA subunit 2 [synthetic
construct]
gi|119623223|gb|EAX02818.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, isoform
CRA_a [Homo sapiens]
gi|123981258|gb|ABM82458.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
[synthetic construct]
gi|123996091|gb|ABM85647.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
[synthetic construct]
gi|261860120|dbj|BAI46582.1| Cleavage stimulation factor 64 kDa subunit [synthetic construct]
gi|410256936|gb|JAA16435.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
gi|410289934|gb|JAA23567.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
Length = 577
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|395850633|ref|XP_003797884.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Otolemur garnettii]
Length = 596
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGMTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|403164772|ref|XP_003324844.2| hypothetical protein PGTG_06381 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165305|gb|EFP80425.2| hypothetical protein PGTG_06381 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 569
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 24 ETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP 83
+T A ++ V + +T TR ++VGN+ F T E+ FF ++ L AG
Sbjct: 159 KTREAVTSSRKVESIFTTATRSKHGVWVGNLLFTTTAQELARFFEPAGKVTRLNMPAGK- 217
Query: 84 VLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP 134
A + N FA+++F S + A+ G+ L I+R DY P
Sbjct: 218 -RAHEAN--SGFAYVDFDSAEAVDAALEKSECLLGGRKLLIKRSSDYSGRP 265
>gi|311276614|ref|XP_003135279.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Sus scrofa]
Length = 572
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|402910773|ref|XP_003918026.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Papio
anubis]
gi|402910775|ref|XP_003918027.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Papio
anubis]
Length = 577
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|431895723|gb|ELK05144.1| Cleavage stimulation factor 64 kDa subunit [Pteropus alecto]
Length = 577
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|390480015|ref|XP_003735829.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2
[Callithrix jacchus]
Length = 577
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|303248437|ref|ZP_07334696.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302490148|gb|EFL50067.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 96
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+++LYVGN+PF EDE+ F + + N ++ + + F F+E
Sbjct: 2 SKKLYVGNLPFSTNEDEIRNLFAAYGDVESV-----NLIVDRETGRLRGFGFVEMSPEGA 56
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
A DG F G+ L++ + QP G
Sbjct: 57 DAAMEALDGKAFGGRDLRVNEAQERQPRSG 86
>gi|21619877|gb|AAH33135.1| Similar to cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kD, partial [Homo sapiens]
Length = 559
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 1 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 49
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 50 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 88
>gi|291395458|ref|XP_002714054.1| PREDICTED: splicing factor, arginine/serine-rich 12 [Oryctolagus
cuniculus]
Length = 618
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 11 GAAGQIPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMME 65
+ G IPA + P A P++G S I R +YVGN+ T D+++E
Sbjct: 143 SSLGAIPAAALDP-NIAALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 201
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FF Q + + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 202 FFKQVGEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 32/129 (24%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEF 100
RRLYVGNIP T +E+ + F + GN V ++ DK FAF+
Sbjct: 73 RRLYVGNIPRTSTNEELAKIFGE----------CGN-VEKAEVMYDKYTKRSRRFAFVTM 121
Query: 101 RSIDETTQAM-AFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDS 156
++++ A+ +G G+ +K+ +P D +T+ A DS
Sbjct: 122 STVEDAQAAIEKMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFI-----------DS 170
Query: 157 PHKIFIGGL 165
P+K+++G L
Sbjct: 171 PYKVYVGNL 179
>gi|426257829|ref|XP_004022524.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Ovis
aries]
Length = 572
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|258405873|ref|YP_003198615.1| RNP-1 like RNA-binding protein [Desulfohalobium retbaense DSM 5692]
gi|257798100|gb|ACV69037.1| RNP-1 like RNA-binding protein [Desulfohalobium retbaense DSM 5692]
Length = 87
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKNFAFLEFRSID 104
+YVGN+PF TEDE+ + F Q + + + G P + F F+E
Sbjct: 4 IYVGNLPFSSTEDEVRDLFAQYGEVQSVKLISDRDTGRP---------RGFGFVEMEDGG 54
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQP 132
A DG F G+SL++ + +P
Sbjct: 55 ADKAIEALDGTTFGGRSLRVNEARERKP 82
>gi|452981005|gb|EME80765.1| hypothetical protein MYCFIDRAFT_139429 [Pseudocercospora fijiensis
CIRAD86]
Length = 301
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R +++GNIP+GV+E+++M+ F + + V + K F FLE+ D
Sbjct: 9 RVVFIGNIPYGVSEEQIMDIFGRAGQVVNF-----RLVYDKETGQPKGFGFLEYTDTDAA 63
Query: 107 TQAMA-FDGINFKGQSLKIRRPHD 129
A+ + + KG++L++ +D
Sbjct: 64 ASAVRNLNDFDLKGRTLRVDYSND 87
>gi|444728816|gb|ELW69258.1| Bcl-2-like protein 2 [Tupaia chinensis]
Length = 367
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 237 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 290
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
++A D F+G+ +K+ +P TD
Sbjct: 291 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR 325
>gi|27807239|ref|NP_777110.1| cleavage stimulation factor subunit 2 [Bos taurus]
gi|71153228|sp|Q8HXM1.1|CSTF2_BOVIN RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|24416593|gb|AAN05427.1| CstF-64 [Bos taurus]
gi|296470997|tpg|DAA13112.1| TPA: cleavage stimulation factor 64 kDa subunit [Bos taurus]
Length = 572
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|357166238|ref|XP_003580645.1| PREDICTED: uncharacterized protein LOC100844841 [Brachypodium
distachyon]
Length = 510
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLS----GLAQAAGNPVLACQINLDKNFAFLEFRS 102
R+++VGN+ V D + E+F+Q + G ++ G P K FA ++S
Sbjct: 228 RKIFVGNVHADVDVDRLYEYFSQFGEIEEGPLGFDKSTGKP---------KGFALFVYKS 278
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHD--YQPTPGVTDNAA 141
++ +A+ NF G+ L I++ D + TPG+ +AA
Sbjct: 279 VESARRALEEPMRNFDGKMLNIQKAIDGRTKGTPGMNTSAA 319
>gi|440901693|gb|ELR52585.1| Cleavage stimulation factor subunit 2 [Bos grunniens mutus]
Length = 619
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|359497129|ref|XP_003635431.1| PREDICTED: splicing factor U2af large subunit B-like, partial
[Vitis vinifera]
Length = 238
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 41/97 (42%)
Query: 155 DSPHKIFIGGLPNYLNEDQ----------------------------------------- 173
+ P +IF+GGLP Y E+Q
Sbjct: 6 EGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 65
Query: 174 AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQ 210
A A LNG+++GDK L V+RA+VG+ A +Q + Q
Sbjct: 66 ACAALNGLKMGDKTLTVRRATVGSGQAKSEQDNILAQ 102
>gi|147898871|ref|NP_001080179.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
laevis]
gi|27735464|gb|AAH41291.1| Cstf-64 protein [Xenopus laevis]
Length = 518
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLSVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|340055425|emb|CCC49744.1| putative RNA-binding protein, fragment, partial [Trypanosoma vivax
Y486]
Length = 853
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
I R++RR+ +GNIPF TED++ +F + + G +A P L K AF++F
Sbjct: 307 IVRESRRVRLGNIPFIATEDDVKQFASSHV---GPVEAVHIP-LTRDTRQSKGAAFVKFV 362
Query: 102 SIDETTQAMAF-DGINFKGQSLKI 124
+D+ +A+ G F G+ L++
Sbjct: 363 RVDDALRALTLCRGAIFMGRLLRV 386
>gi|57525681|ref|NP_001003613.1| splicing regulatory glutamine/lysine-rich protein 1 [Danio rerio]
gi|50417233|gb|AAH78219.1| Zgc:100974 [Danio rerio]
Length = 512
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 24 ETTVA--AAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGL 76
+T+VA +A +A P++G S + R +YVGN+ T D++++FF Q +
Sbjct: 139 DTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVK-F 197
Query: 77 AQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ AG+ + FAF+EF D +A+ ++G+ F + LKI
Sbjct: 198 VRMAGDETQPTR------FAFVEFADQDSVARALTYNGVMFGDRPLKI 239
>gi|297297505|ref|XP_001107287.2| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Macaca
mulatta]
Length = 355
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 230 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 283
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
++A D F+G+ +K+ +P TD
Sbjct: 284 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR 318
>gi|167517167|ref|XP_001742924.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778023|gb|EDQ91638.1| predicted protein [Monosiga brevicollis MX1]
Length = 231
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA 80
+ PE A AV ++G R+YVG IPF E E+ E F + Q A
Sbjct: 1 MTPEQHERAQRLKAVQLLG--------RVYVGGIPFDAGEQEIAEAFRP---FGAIQQCA 49
Query: 81 GNPVLACQINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKIRRPHDY-QPTPGVTD 138
A +N K F F+E+ + + A+ N KG++LKI RP++ Q P +
Sbjct: 50 FTYDQA--LNKHKGFCFVEYDAPEAALLALEQMTSYNIKGRTLKIGRPNNAPQALPYLET 107
Query: 139 NAAVAVPAG--VISTVVPD 155
AA A A +S++ PD
Sbjct: 108 LAAKAAEAHRIYVSSIHPD 126
>gi|351697106|gb|EHB00025.1| Polyadenylate-binding protein 2, partial [Heterocephalus glaber]
Length = 189
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 34 AVPVVGSTITR---QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
A PV+ S R AR +YVGN+ +G T +E+ + H G +L + +
Sbjct: 39 AGPVIMSIEERMEADARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFS 92
Query: 91 LD-KNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
K FA++EF + ++A D F+G+ +K+
Sbjct: 93 GHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 127
>gi|194373969|dbj|BAG62297.1| unnamed protein product [Homo sapiens]
Length = 553
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|395850631|ref|XP_003797883.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Otolemur garnettii]
Length = 576
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGMTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|344296752|ref|XP_003420068.1| PREDICTED: cleavage stimulation factor subunit 2-like [Loxodonta
africana]
Length = 582
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|348544131|ref|XP_003459535.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2
[Oreochromis niloticus]
Length = 284
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 98 RSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKES 151
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
AMA D F+G+ +K+ +P TD
Sbjct: 152 VRTAMALDESLFRGRQIKVGAKRTNRPGISTTDR 185
>gi|51258747|gb|AAH80037.1| Cstf-64-prov protein [Xenopus laevis]
Length = 498
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLSVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|380483681|emb|CCF40465.1| cutinase negative acting protein [Colletotrichum higginsianum]
Length = 401
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 8 LNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFF 67
+N +GQ PA P+ A A G T++ ++ L+VGN+PF V +D + FF
Sbjct: 279 MNIDFSGQKPAGEGNPQ----ARAFDRAQKHGDTVSPESDTLFVGNLPFDVDQDTVRAFF 334
Query: 68 NQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMA 111
++ ++ + P NL K F ++ F SID+ A A
Sbjct: 335 SEAAEVTSVRL----PTDPESGNL-KGFGYVSFNSIDDAKTAFA 373
>gi|449498377|ref|XP_002191180.2| PREDICTED: cleavage stimulation factor subunit 2 [Taeniopygia
guttata]
Length = 575
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLSVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|50552688|ref|XP_503754.1| YALI0E09889p [Yarrowia lipolytica]
gi|49649623|emb|CAG79345.1| YALI0E09889p [Yarrowia lipolytica CLIB122]
Length = 601
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 97 FLEFRSIDETTQAMAFDG--INFKGQSLKIRRPHDY-QPTPGVTDNAAVAV-PAGVISTV 152
+EF S + T A+A G IN+ G + IRRP +Y PTP ++ + ++ +++V
Sbjct: 317 LVEFFSAEMATLALALSGLGINYSGPPISIRRPSNYICPTPERSEVSRRSLDEEKEVASV 376
Query: 153 VPDSPHKIFIGGLPNYLNEDQ 173
V DS KI + +P + EDQ
Sbjct: 377 VEDSNTKIIVWDIPFNVEEDQ 397
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 34/163 (20%)
Query: 21 IIPETTVAAAAAAA-VPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA 79
I P+ +A +A A PV S + ARRLYVGNIP + E+ +
Sbjct: 45 IKPKRPIAVSAVTAEAPVATSDVA--ARRLYVGNIPRTLDSAELARIVEEH--------- 93
Query: 80 AGNPVLACQINLDK------NFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQP 132
V ++ DK FAF+ +++++ A+ +G G+ +K+
Sbjct: 94 --GAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTEIGGREIKV-------- 143
Query: 133 TPGVTDNAAVAVPAGVI---STVVPDSPHKIFIGGLPNYLNED 172
+T+ + + ++ + DSPHK+++G L + D
Sbjct: 144 --NITEKPLLTLDMSLLQAEESQFIDSPHKVYVGNLARTVTTD 184
>gi|357612937|gb|EHJ68241.1| polyadenylate binding protein 2 [Danaus plexippus]
Length = 217
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEF 100
I R +Y+GN+ +G T +E+ + H G +L + + K FA++EF
Sbjct: 91 IETDNRSVYIGNVDYGATAEEL------EQHFHGCGSINRVTILCNKFDGHPKGFAYIEF 144
Query: 101 RSIDETTQAMAFDGINFKGQSLKI 124
D AMA D F+G+ +K+
Sbjct: 145 GDKDSVQTAMAMDESLFRGRQIKV 168
>gi|46111387|ref|XP_382751.1| hypothetical protein FG02575.1 [Gibberella zeae PH-1]
Length = 554
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 109
++GN+ + VT D + +F L+G + ++ K F ++EF ++D QA
Sbjct: 87 HLGNLAYDVTNDAVADF------LTGCGVVNVRLIEDRELQRPKGFGYVEFETLDGLKQA 140
Query: 110 MAFDGINFKGQSLKIR 125
+A DG +F G+ +KI+
Sbjct: 141 LALDGESFGGRMIKIK 156
>gi|417398942|gb|JAA46504.1| Putative splicing factor rnps1 sr protein superfamily [Desmodus
rotundus]
Length = 323
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 198 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 251
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
++A D F+G+ +K+ +P TD
Sbjct: 252 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR 286
>gi|632500|gb|AAB50269.1| polyadenylation factor 64 kDa subunit [Xenopus laevis]
Length = 497
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLSVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|407004871|gb|EKE21139.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 109
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+++LY+GN+ + +TED++ E+F Q A V+ Q K FAF+E + +
Sbjct: 2 SKKLYIGNLLYEITEDDLKEYFGQ------AGSVASATVIRFQDGKSKGFAFVEMETEEA 55
Query: 106 TTQAM-AFDGINFKGQSL 122
+A+ +G ++KG+ +
Sbjct: 56 AQKAIDTLNGQDYKGRKI 73
>gi|428167652|gb|EKX36608.1| hypothetical protein GUITHDRAFT_117273 [Guillardia theta CCMP2712]
Length = 828
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFA 96
++ S + RR++VGN+P G + + N M +A + + + K FA
Sbjct: 374 LISSDPRKALRRIHVGNLPLGSSTTFLKHTINNAMQAEKIAISDSVADVYVNSSTTKRFA 433
Query: 97 FLEFRSIDETTQAMA-FDG-INFKGQSLKIRRP 127
+EFR+++E+ + +A +G + GQ L+ RP
Sbjct: 434 LVEFRTVEESNRCIAHLNGKVELFGQLLEFSRP 466
>gi|147907300|ref|NP_001080719.1| polyadenylate-binding protein 2-B [Xenopus laevis]
gi|82241535|sp|Q7ZXB8.1|PAB2B_XENLA RecName: Full=Polyadenylate-binding protein 2-B; Short=PABP-2-B;
Short=Poly(A)-binding protein 2-B; AltName: Full=Nuclear
poly(A)-binding protein 1-B; AltName:
Full=Poly(A)-binding protein II-B; Short=PABII-B;
AltName: Full=Polyadenylate-binding nuclear protein 1-B;
AltName: Full=XLnPABP2-B; AltName: Full=nPABP2-B;
AltName: Full=xPABPII-B
gi|27924235|gb|AAH45063.1| Pabpn1-prov protein [Xenopus laevis]
Length = 295
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 161 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKE 214
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 215 SVRTSLALDESLFRGRQIKV 234
>gi|398396524|ref|XP_003851720.1| hypothetical protein MYCGRDRAFT_73484 [Zymoseptoria tritici IPO323]
gi|339471600|gb|EGP86696.1| hypothetical protein MYCGRDRAFT_73484 [Zymoseptoria tritici IPO323]
Length = 321
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
+T + R +++GNIP+ V+E+++M+ F + + G V + K F FLE
Sbjct: 2 ATREKGGRVVFIGNIPYDVSEEQIMDIFGRTGQVVGFRL-----VYDKETQQPKGFGFLE 56
Query: 100 FRSIDETTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDN 139
+ D A+ + G++L++ +D + G T+N
Sbjct: 57 YTDADSAASAVRNLNDFELNGRTLRVDYSNDNR---GTTNN 94
>gi|290984354|ref|XP_002674892.1| predicted protein [Naegleria gruberi]
gi|284088485|gb|EFC42148.1| predicted protein [Naegleria gruberi]
Length = 155
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQ---MHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+R +YVGN+ +G +E+ F Q + ++ + GNP K FA++EF+
Sbjct: 31 SRSIYVGNVDYGSVAEELENHFKQAGDIIRITIKSDKMGNP---------KGFAYIEFKD 81
Query: 103 IDETTQAMAFDGINFKGQSLKI 124
A+ +G F+ + LK+
Sbjct: 82 KSSVENALQLNGSTFRNRELKV 103
>gi|195395200|ref|XP_002056224.1| GJ10336 [Drosophila virilis]
gi|194142933|gb|EDW59336.1| GJ10336 [Drosophila virilis]
Length = 427
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 26/133 (19%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEF 100
R+LYVGNIP V+ DE L + Q G V ++ DK FAF+
Sbjct: 60 RKLYVGNIPRTVSNDE----------LEKIVQEHG-AVEKAEVMYDKYSKRSRRFAFVTM 108
Query: 101 RSI-DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
+++ D A +G G+ +K+ + P T+ + V AG ST V DSP+K
Sbjct: 109 KTVEDANAAAEKLNGTEIGGREIKV----NITEKPLTTE--GLPVQAGE-STFV-DSPYK 160
Query: 160 IFIGGLPNYLNED 172
+++G L + D
Sbjct: 161 VYVGNLAKNVTSD 173
>gi|358391435|gb|EHK40839.1| hypothetical protein TRIATDRAFT_28798 [Trichoderma atroviride IMI
206040]
Length = 326
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 35/146 (23%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-----FAFLEFRS 102
RL V NI + +TE+++ E F + P+ Q+ D++ AF+ +
Sbjct: 90 RLRVENIHYDLTEEDLDELFRRI-----------GPISKLQLRYDRSGRSEGVAFVTYED 138
Query: 103 IDETTQAMA-FDGINFKGQSLKI--------RRPHDYQPTPGVTDNAAVAVPAGVISTVV 153
++ +A+ FDG N GQ +++ R P D PG + ++ P G ++
Sbjct: 139 KEDAAEAIKQFDGANANGQPIRLTALSSGPSRNPFDTAVMPGKPLSERISAPGGRSRSL- 197
Query: 154 PDSPHKIFIGGLPNYLNEDQAIAGLN 179
SPH+ Y ED A G++
Sbjct: 198 --SPHR-------RYDEEDAARRGID 214
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 26/133 (19%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEF 100
R+LYVGNIP V+ DE L + Q G V ++ DK FAF+
Sbjct: 60 RKLYVGNIPRTVSNDE----------LEKIVQEHG-AVEKAEVMYDKYSKRSRRFAFVTM 108
Query: 101 RSI-DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
+++ D A +G G+ +K+ + P T+ + V AG ST V DSP+K
Sbjct: 109 KTVEDANAAAEKLNGTEIGGREIKV----NITEKPLTTE--GLPVQAGE-STFV-DSPYK 160
Query: 160 IFIGGLPNYLNED 172
+++G L + D
Sbjct: 161 VYVGNLAKNVTSD 173
>gi|380798899|gb|AFE71325.1| cleavage stimulation factor subunit 2, partial [Macaca mulatta]
Length = 575
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNF 95
+ R R ++VGNIP+ TE+++ + F++ PV++ ++ D K +
Sbjct: 9 VDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYDRETGKPKGY 57
Query: 96 AFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F E++ + AM +G F G++L++
Sbjct: 58 GFCEYQDQETALSAMRNLNGREFSGRALRV 87
>gi|408391819|gb|EKJ71187.1| hypothetical protein FPSE_08693 [Fusarium pseudograminearum CS3096]
Length = 558
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 109
++GN+ + VT D + +F L+G + ++ K F ++EF ++D QA
Sbjct: 85 HLGNLAYDVTNDAVADF------LTGCGVVNVRLIEDRELQRPKGFGYVEFETLDGLKQA 138
Query: 110 MAFDGINFKGQSLKIR 125
+A DG +F G+ +KI+
Sbjct: 139 LALDGESFGGRMIKIK 154
>gi|166365958|ref|YP_001658231.1| RNA binding protein [Microcystis aeruginosa NIES-843]
gi|425466552|ref|ZP_18845850.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9809]
gi|166088331|dbj|BAG03039.1| RNA binding protein [Microcystis aeruginosa NIES-843]
gi|389830907|emb|CCI26790.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9809]
Length = 98
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQ-----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+YVGN+PF V +D+++E F + ++HL + + + FAF+E +
Sbjct: 3 IYVGNLPFEVDQDDVVEVFKEYGEIKRVHLP----------MDRETKRKRGFAFVEMETP 52
Query: 104 DETTQAM-AFDGINFKGQSLKIRRPHDYQP 132
++ +A+ A DG + G+ LK+ + + +P
Sbjct: 53 EQEAKAIAALDGAQWMGRELKVNQAREKEP 82
>gi|315434255|ref|NP_001186793.1| BCL2L2-PABPN1 protein [Homo sapiens]
gi|332223067|ref|XP_003260692.1| PREDICTED: polyadenylate-binding protein 2-like isoform 1 [Nomascus
leucogenys]
gi|338717165|ref|XP_003363601.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Equus
caballus]
gi|397473278|ref|XP_003808142.1| PREDICTED: polyadenylate-binding protein 2 [Pan paniscus]
gi|403264162|ref|XP_003924360.1| PREDICTED: polyadenylate-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410961928|ref|XP_003987530.1| PREDICTED: polyadenylate-binding protein 2 isoform 3 [Felis catus]
gi|426232740|ref|XP_004010379.1| PREDICTED: polyadenylate-binding protein 2 [Ovis aries]
gi|410267786|gb|JAA21859.1| BCL2L2-PABPN1 readthrough [Pan troglodytes]
gi|417399112|gb|JAA46586.1| Putative splicing factor rnps1 sr protein superfamily [Desmodus
rotundus]
Length = 333
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 198 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 251
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
++A D F+G+ +K+ +P TD
Sbjct: 252 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR 286
>gi|299469902|emb|CBN76756.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 774
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 24/108 (22%)
Query: 31 AAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
A+AA P ST+ YVGN+ VTED++ EFF A + + +I
Sbjct: 307 ASAAQPDPDSTV-------YVGNLDPSVTEDDIREFF-----------AECGAIASVRIP 348
Query: 91 LDKN------FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQP 132
DK AF+ F QA+ + KGQS+KIRR +P
Sbjct: 349 QDKETGKMRGIAFVAFAKHSGVLQALTLHMDDLKGQSVKIRRADTAKP 396
>gi|396480635|ref|XP_003841040.1| similar to multiple RNA-binding domain containing protein 1
[Leptosphaeria maculans JN3]
gi|312217614|emb|CBX97561.1| similar to multiple RNA-binding domain containing protein 1
[Leptosphaeria maculans JN3]
Length = 831
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 21/119 (17%)
Query: 17 PANVIIPETTVAAAAAAAVPVVGSTITRQAR-----RLYVGNIPFGVTEDEMMEFFN--- 68
PA PE + A A AA P V +T + R RL++ N+ + VTEDE+ E F
Sbjct: 274 PAPQDAPEESKAEAPAAEEPNVDATSAEEDRIRETGRLFLRNLHYEVTEDELREQFAKHG 333
Query: 69 --QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA-MAFDGINFKGQSLKI 124
Q++H+ L +A G K FAF++F++ D +A + D F+G+ L I
Sbjct: 334 PLQEVHVP-LNKADGK---------GKGFAFVQFQNHDHAVEAYLDNDNTIFQGRLLHI 382
>gi|149059243|gb|EDM10250.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Rattus
norvegicus]
Length = 610
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T A P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 151 IPAAALDPNIT-ALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 209
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 210 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 256
>gi|440911851|gb|ELR61479.1| Paraspeckle component 1, partial [Bos grunniens mutus]
Length = 465
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TED+ F + G P IN D+ F F
Sbjct: 18 GEKTYTQRCRLFVGNLPTDITEDDFKRLF----------ERYGEPSEVF-INRDRGFGFI 66
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 67 RLESRTLAEIAKA-ELDGTILKSRPLRIR 94
>gi|417403608|gb|JAA48603.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 647
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNF 95
+ R R ++VGNIP+ TE+++ + F++ PV++ ++ D K +
Sbjct: 11 VDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYDRETGKPKGY 59
Query: 96 AFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F E++ + AM +G F G++L++
Sbjct: 60 GFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|148235052|ref|NP_001080735.1| non-POU domain containing, octamer-binding [Xenopus laevis]
gi|28175300|gb|AAH45128.1| P54nrb protein [Xenopus laevis]
Length = 464
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRS 102
Q RL+VGN+P VTE+EM + F + +A I+ DK F F LE R+
Sbjct: 66 QRSRLFVGNLPSDVTEEEMRKLFEK------FGKAG-----EIFIHKDKGFGFIRLETRT 114
Query: 103 IDETTQAMAFDGINFKGQSLKIR 125
+ E +A D + +G+ L++R
Sbjct: 115 LAEIAKA-ELDNLPLRGKQLRVR 136
>gi|83642781|dbj|BAE54372.1| 54 kD nuclear RNA-binding protein [Xenopus laevis]
Length = 463
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF--LEFRS 102
Q RL+VGN+P VTE+EM + F + +A I+ DK F F LE R+
Sbjct: 65 QRSRLFVGNLPSDVTEEEMRKLFEK------FGKAG-----EIFIHKDKGFGFIRLETRT 113
Query: 103 IDETTQAMAFDGINFKGQSLKIR 125
+ E +A D + +G+ L++R
Sbjct: 114 LAEIAKA-ELDNLPLRGKQLRVR 135
>gi|350590070|ref|XP_003131163.3| PREDICTED: paraspeckle component 1 [Sus scrofa]
Length = 472
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TED+ F + G P IN D+ F F
Sbjct: 72 GEKTYTQRCRLFVGNLPTDITEDDFKRLFER----------YGEPSEVF-INRDRGFGFI 120
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 121 RLESRTLAEIAKA-ELDGTILKSRPLRIR 148
>gi|195145742|ref|XP_002013849.1| GL24357 [Drosophila persimilis]
gi|194102792|gb|EDW24835.1| GL24357 [Drosophila persimilis]
Length = 418
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|443702054|gb|ELU00216.1| hypothetical protein CAPTEDRAFT_169883 [Capitella teleta]
Length = 431
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 34 AVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK 93
A+P+ T + R L++GN+P +TED+ +FF + + +N K
Sbjct: 15 AIPLSEKKYTGRCR-LFLGNLPNEMTEDDFKDFFTPHGEFTEVF-----------VNPSK 62
Query: 94 NFAFLEF--RSIDETTQAMAFDGINFKGQSLKIR 125
F F+ RS E +A A DGIN KG++L+ R
Sbjct: 63 GFGFIRMDTRSNAEKAKA-AIDGINHKGRTLRCR 95
>gi|397469246|ref|XP_003806272.1| PREDICTED: RNA-binding protein with serine-rich domain 1-like [Pan
paniscus]
Length = 422
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + VT+D +ME F+ G + PV +L K +A++EF + DE
Sbjct: 311 KVHIGRLTRNVTKDHIMEIFS----TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 366
Query: 108 QAMA-FDGINFKGQSL 122
+A+ DG GQ +
Sbjct: 367 KALKHMDGGQIDGQEI 382
>gi|17137710|ref|NP_477453.1| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|5713194|gb|AAD47839.1|AF170082_1 cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|23171661|gb|AAF55577.2| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|205360993|gb|ACI03573.1| FI01908p [Drosophila melanogaster]
Length = 419
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|74140797|dbj|BAC29709.2| unnamed protein product [Mus musculus]
Length = 401
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 35 IPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 93
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 94 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|348544129|ref|XP_003459534.1| PREDICTED: polyadenylate-binding protein 2-like isoform 1
[Oreochromis niloticus]
Length = 232
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 98 RSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKES 151
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
AMA D F+G+ +K+ +P TD
Sbjct: 152 VRTAMALDESLFRGRQIKVGAKRTNRPGISTTDR 185
>gi|126010727|gb|AAI33552.1| PABPN1 protein [Bos taurus]
Length = 275
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 140 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 193
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 194 SVRTSLALDESLFRGRQIKV 213
>gi|417409417|gb|JAA51214.1| Putative splicing factor rnps1 sr protein superfamily, partial
[Desmodus rotundus]
Length = 293
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 140 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 193
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 194 SVRTSLALDESLFRGRQIKV 213
>gi|340517170|gb|EGR47415.1| predicted protein [Trichoderma reesei QM6a]
Length = 797
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 18/91 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFN-----QQMHLSGLAQAAGNPVLACQINLDKN 94
+TI+R +R L+V N+P+ TE+++ E F Q++HL A AG K
Sbjct: 305 ATISRTSR-LFVRNLPYTTTEEDLYEAFGKFGTIQEVHLPTNASGAG-----------KG 352
Query: 95 FAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124
FA + F + + A A DG+ F+G+ L I
Sbjct: 353 FALVLFDNPSDAVNAFQALDGVTFQGRILHI 383
>gi|195029099|ref|XP_001987412.1| GH21908 [Drosophila grimshawi]
gi|193903412|gb|EDW02279.1| GH21908 [Drosophila grimshawi]
Length = 224
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G + +E+ + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEY 149
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
A+A + F+G+ +K+ +P T+ A G + V H F G
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRSCCHSTFRG 207
>gi|201860272|ref|NP_001128480.1| polyadenylate-binding protein 2 [Rattus norvegicus]
gi|149063929|gb|EDM14199.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Rattus
norvegicus]
Length = 302
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 167 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 220
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 221 SVRTSLALDESLFRGRQIKV 240
>gi|83767572|dbj|BAE57711.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867601|gb|EIT76847.1| alternative splicing factor SRp55/B52/SRp75 [Aspergillus oryzae
3.042]
Length = 298
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLY+GN+P VT+ ++ E F+ H SG +I L F F+E+ +
Sbjct: 8 RLYLGNLPRNVTKQDIEEHFS--THGSG---------KITEIKLMNGFGFIEYEDAMDAR 56
Query: 108 QAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+ DG +FKG+ L + R P + PG D + P + +++ + G
Sbjct: 57 DVVP-DGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTV--------YRMMVSG 107
Query: 165 LPNYLNED 172
LP +D
Sbjct: 108 LPETSWQD 115
>gi|417409509|gb|JAA51255.1| Putative splicing factor rnps1 sr protein superfamily, partial
[Desmodus rotundus]
Length = 303
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 140 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 193
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 194 SVRTSLALDESLFRGRQIKV 213
>gi|126342916|ref|XP_001364467.1| PREDICTED: cleavage stimulation factor subunit 2-like [Monodelphis
domestica]
Length = 551
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLAVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|4758876|ref|NP_004634.1| polyadenylate-binding protein 2 [Homo sapiens]
gi|343780920|ref|NP_001230477.1| polyadenylate-binding protein 2 [Sus scrofa]
gi|360039231|ref|NP_001123909.2| polyadenylate-binding protein 2 [Canis lupus familiaris]
gi|114652132|ref|XP_001162168.1| PREDICTED: polyadenylate-binding protein 2 isoform 1 [Pan
troglodytes]
gi|296214561|ref|XP_002753680.1| PREDICTED: polyadenylate-binding protein 2 isoform 2 [Callithrix
jacchus]
gi|395859297|ref|XP_003801976.1| PREDICTED: polyadenylate-binding protein 2 [Otolemur garnettii]
gi|402875708|ref|XP_003901638.1| PREDICTED: polyadenylate-binding protein 2 [Papio anubis]
gi|426376431|ref|XP_004055004.1| PREDICTED: polyadenylate-binding protein 2 [Gorilla gorilla
gorilla]
gi|46403176|sp|Q86U42.3|PABP2_HUMAN RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|2895276|gb|AAC39596.1| poly(A) binding protein II [Homo sapiens]
gi|15012075|gb|AAH10939.1| Poly(A) binding protein, nuclear 1 [Homo sapiens]
gi|119586571|gb|EAW66167.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Homo sapiens]
gi|119586572|gb|EAW66168.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Homo sapiens]
gi|387539310|gb|AFJ70282.1| polyadenylate-binding protein 2 [Macaca mulatta]
Length = 306
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 171 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>gi|417399469|gb|JAA46738.1| Putative apoptosis regulator [Desmodus rotundus]
Length = 351
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 198 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 251
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 252 SVRTSLALDESLFRGRQIKV 271
>gi|50949479|emb|CAH10414.1| hypothetical protein [Homo sapiens]
Length = 331
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
S I R +YVGN+ T D+++EFF Q + + AG+ + FAF+
Sbjct: 59 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 111
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + +A+AF+G+ F + LKI
Sbjct: 112 EFADQNSVPRALAFNGVMFGDRPLKI 137
>gi|346321757|gb|EGX91356.1| nucleolin protein Nsr1, putative [Cordyceps militaris CM01]
Length = 438
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 3 VNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDE 62
V+ LN A PA E+ AA G T++ ++ L+VGN+PF +D
Sbjct: 247 VDGRALNLDYANAKPA-----ESKPQDRAADRASRHGDTLSAESETLFVGNLPFDTEQDA 301
Query: 63 MMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM 110
+ EFF + ++ + P NL K F ++ F SID+ A+
Sbjct: 302 VREFFGEVAEVASIRL----PTDPESGNL-KGFGYVTFNSIDDAKTAL 344
>gi|296475869|tpg|DAA17984.1| TPA: splicing factor, arginine/serine-rich 12-like [Bos taurus]
Length = 325
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
S I R +YVGN+ T D+++EFF Q + + AG+ + FAF+
Sbjct: 127 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 179
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + +A+AF+G+ F + LKI
Sbjct: 180 EFADQNSVPRALAFNGVMFGDRPLKI 205
>gi|148709763|gb|EDL41709.1| cleavage stimulation factor, 3' pre-RNA subunit 2, tau [Mus
musculus]
Length = 644
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 27 VAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA 86
++AA +++ V + R R ++VGNIP+ TE+++ + F++ + V
Sbjct: 8 LSAAIMSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRL-----VYD 62
Query: 87 CQINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
+ K + F E++ + AM +G F G++L++
Sbjct: 63 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 101
>gi|125774537|ref|XP_001358527.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
gi|54638266|gb|EAL27668.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|417409281|gb|JAA51155.1| Putative splicing factor rnps1 sr protein superfamily, partial
[Desmodus rotundus]
Length = 278
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 153 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 206
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 207 SVRTSLALDESLFRGRQIKV 226
>gi|209880680|ref|XP_002141779.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557385|gb|EEA07430.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 313
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 18/81 (22%)
Query: 51 VGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEFRSID 104
VGN+ F TEDE+ E +A PVL+ +I DK+ F+F E+R I+
Sbjct: 6 VGNVAFDATEDELREVM-----------SAVGPVLSIRIVYDKDTGLSRGFSFCEYRDIE 54
Query: 105 ETTQAMA-FDGINFKGQSLKI 124
A+ +G +G+++++
Sbjct: 55 TCIMAIKNLNGYELRGRAIRV 75
>gi|50510589|dbj|BAD32280.1| mKIAA0689 protein [Mus musculus]
Length = 643
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 27 VAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA 86
++AA +++ V + R R ++VGNIP+ TE+++ + F++ + V
Sbjct: 7 LSAAIMSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRL-----VYD 61
Query: 87 CQINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
+ K + F E++ + AM +G F G++L++
Sbjct: 62 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 100
>gi|9506945|ref|NP_062275.1| polyadenylate-binding protein 2 [Mus musculus]
gi|46396417|sp|Q8CCS6.3|PABP2_MOUSE RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|2351846|gb|AAC00210.1| poly(A) binding protein II [Mus musculus]
gi|33585929|gb|AAH55866.1| Poly(A) binding protein, nuclear 1 [Mus musculus]
gi|148704376|gb|EDL36323.1| poly(A) binding protein, nuclear 1, isoform CRA_b [Mus musculus]
Length = 302
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 167 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 220
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 221 SVRTSLALDESLFRGRQIKV 240
>gi|417399667|gb|JAA46825.1| Putative apoptosis regulator [Desmodus rotundus]
Length = 361
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 198 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 251
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 252 SVRTSLALDESLFRGRQIKV 271
>gi|380800735|gb|AFE72243.1| polyadenylate-binding protein 2, partial [Macaca mulatta]
Length = 273
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 138 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 191
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 192 SVRTSLALDESLFRGRQIKV 211
>gi|350296577|gb|EGZ77554.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 356
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKN 94
G TI+ ++ L+VGN+PF E + +FFN ++ L Q +G P K
Sbjct: 204 GDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQESGRP---------KG 254
Query: 95 FAFLEFRSIDETTQAMA-FDGINFKGQSLKIR--RPHD 129
FA++ F S+++ A +G + G+ +++ +P D
Sbjct: 255 FAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLDYAKPRD 292
>gi|336464486|gb|EGO52726.1| hypothetical protein NEUTE1DRAFT_91358 [Neurospora tetrasperma FGSC
2508]
Length = 356
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKN 94
G TI+ ++ L+VGN+PF E + +FFN ++ L Q +G P K
Sbjct: 204 GDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQESGRP---------KG 254
Query: 95 FAFLEFRSIDETTQAMA-FDGINFKGQSLKIR--RPHD 129
FA++ F S+++ A +G + G+ +++ +P D
Sbjct: 255 FAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLDYAKPRD 292
>gi|195497709|ref|XP_002096214.1| GE25546 [Drosophila yakuba]
gi|194182315|gb|EDW95926.1| GE25546 [Drosophila yakuba]
Length = 414
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|308810827|ref|XP_003082722.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116061191|emb|CAL56579.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 650
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-----FAFLEFRSI 103
++V IP V+E E+ E F AA ++ C++ D N +AF+ F +
Sbjct: 197 VFVKEIPASVSERELAETF-----------AACGRIVDCRMCRDANSNKFSYAFVAFETA 245
Query: 104 DETTQAMAFDGINFKGQSLKIRR 126
DE A++ D ++ G+++ +RR
Sbjct: 246 DEVQNALSLDKMSLHGKNIVVRR 268
>gi|26328001|dbj|BAC27741.1| unnamed protein product [Mus musculus]
Length = 292
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF
Sbjct: 166 DARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 219
Query: 104 DETTQAMAFDGINFKGQSLKI 124
+ ++A D F+G+ +K+
Sbjct: 220 ESVRTSLALDESLFRGRQIKV 240
>gi|28193136|emb|CAD62310.1| unnamed protein product [Homo sapiens]
Length = 298
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 173 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 226
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 227 SVRTSLALDESLFRGRQIKV 246
>gi|358421036|ref|XP_001254105.2| PREDICTED: cleavage stimulation factor subunit 2-like [Bos taurus]
Length = 331
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|354488039|ref|XP_003506178.1| PREDICTED: polyadenylate-binding protein 2-like [Cricetulus
griseus]
Length = 333
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 198 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 251
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDN 139
++A D F+G+ +K+ +P TD
Sbjct: 252 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDR 286
>gi|297694743|ref|XP_002824624.1| PREDICTED: polyadenylate-binding protein 2 isoform 1 [Pongo abelii]
Length = 296
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 171 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>gi|148704375|gb|EDL36322.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Mus musculus]
Length = 294
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF
Sbjct: 168 DARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 221
Query: 104 DETTQAMAFDGINFKGQSLKI 124
+ ++A D F+G+ +K+
Sbjct: 222 ESVRTSLALDESLFRGRQIKV 242
>gi|39645085|gb|AAH63761.1| Sfrs12 protein, partial [Mus musculus]
Length = 407
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 35 IPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 93
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 94 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|310789593|gb|EFQ25126.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 570
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSI 103
++GN+ + TE+ + EFF G +++ +I D K FA+ EF+ +
Sbjct: 94 HLGNLSYDATEETVNEFFE------------GCDIVSVRIIEDREQQRPKGFAYAEFKDL 141
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
+ QA+ DG F+G++++I+
Sbjct: 142 EGLKQALTLDGQTFQGRAIRIK 163
>gi|194332803|ref|NP_001123707.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
(Silurana) tropicalis]
gi|189442601|gb|AAI67314.1| LOC100170457 protein [Xenopus (Silurana) tropicalis]
Length = 498
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---- 92
V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 6 VRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYDRETG 54
Query: 93 --KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 55 KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|380792715|gb|AFE68233.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a,
partial [Macaca mulatta]
Length = 394
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
S I R +YVGN+ T D+++EFF Q + + AG+ + FAF+
Sbjct: 175 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 227
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + +A+AF+G+ F + LKI
Sbjct: 228 EFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|270010566|gb|EFA07014.1| hypothetical protein TcasGA2_TC009984 [Tribolium castaneum]
Length = 225
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 98 RSIYVGNVDYGATAEEL------EQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDRDS 151
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 152 VQTAMAMDESLFRGRPIKV 170
>gi|28557621|gb|AAO45216.1| RE27227p [Drosophila melanogaster]
Length = 437
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|26333193|dbj|BAC30314.1| unnamed protein product [Mus musculus]
Length = 318
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 35 IPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 93
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 94 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|406868506|gb|EKD21543.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 639
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR---SI 103
R ++ GN+P VTE E+ + F Q + + + ++ +N FAF+EF+ S+
Sbjct: 370 RSVFFGNLPSDVTEGEIHDIFQQFGGVCNITLHKSDSII--DVNEKNCFAFVEFQQQPSV 427
Query: 104 DETTQAMAFDGINFKGQSLKI 124
T AM G N +G++ KI
Sbjct: 428 SRTLSAMG--GFNLRGKTTKI 446
>gi|301617153|ref|XP_002938004.1| PREDICTED: paraspeckle component 1-like [Xenopus (Silurana)
tropicalis]
Length = 517
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE+E + F + G P IN D+ F F
Sbjct: 68 GEKSYTQRCRLFVGNLPTDITEEEFKKLF----------EKFGEPSEVF-INRDRGFGFI 116
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG+ K + L+IR
Sbjct: 117 RLESRTLAEIAKA-ELDGMILKNRPLRIR 144
>gi|27807029|ref|NP_776994.1| polyadenylate-binding protein 2 [Bos taurus]
gi|46396285|sp|Q28165.3|PABP2_BOVIN RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|1051125|emb|CAA62006.1| polyA binding protein II [Bos taurus]
gi|126920947|gb|AAI33559.1| Poly(A) binding protein, nuclear 1 [Bos taurus]
gi|296483592|tpg|DAA25707.1| TPA: polyadenylate-binding protein 2 [Bos taurus]
Length = 306
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 171 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>gi|281209343|gb|EFA83511.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 1109
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 18/87 (20%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI--NLD----KNFAFLEFR 101
R+YVG+IP+ V ED++ F+ + GN V++C + NL+ K F F+++
Sbjct: 874 RIYVGSIPWNVNEDQIKVIFS----------SIGN-VVSCSLMPNLESGRHKGFGFIDYD 922
Query: 102 SIDETTQAMA-FDGINFKGQSLKIRRP 127
+ A+A +G + G+ LK+ RP
Sbjct: 923 NSKSAEDAIATLNGYDIGGRQLKVGRP 949
>gi|57530169|ref|NP_001006433.1| cleavage stimulation factor subunit 2 [Gallus gallus]
gi|53128673|emb|CAG31323.1| hypothetical protein RCJMB04_5b8 [Gallus gallus]
Length = 475
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLSVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>gi|171913967|ref|ZP_02929437.1| RNP-1 like RNA-binding protein [Verrucomicrobium spinosum DSM 4136]
Length = 238
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLYVGN+ + +E ++ E FN SG + A V+ + K FAF+ S+DE
Sbjct: 128 RLYVGNLSYDASESDLFELFNG----SGRVKNA-EVVVNNRTQRSKGFAFVTMMSVDEAK 182
Query: 108 QAM-AFDGINFKGQSL 122
+A+ +G +F G+ L
Sbjct: 183 KAVDDLNGKDFMGRPL 198
>gi|442555271|ref|YP_007365096.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
gi|441492718|gb|AGC49412.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
Length = 88
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLE 99
A+ +YVGN+P+ TE+++ F++ H V+A ++ D+ F F+E
Sbjct: 2 AKSIYVGNLPWSATEEQVQSLFSEYGH-----------VMAVKLVSDRETGRARGFGFVE 50
Query: 100 FRSIDETTQAMAFDGINFKGQSLKI 124
T A D NF G++L++
Sbjct: 51 MEEPGATAAIEALDNANFGGRTLRV 75
>gi|358009812|pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF
Sbjct: 5 DARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 58
Query: 104 DETTQAMAFDGINFKGQSLKI 124
+ ++A D F+G+ +K+
Sbjct: 59 ESVRTSLALDESLFRGRQIKV 79
>gi|195343246|ref|XP_002038209.1| GM17877 [Drosophila sechellia]
gi|194133059|gb|EDW54627.1| GM17877 [Drosophila sechellia]
Length = 419
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|67537616|ref|XP_662582.1| hypothetical protein AN4978.2 [Aspergillus nidulans FGSC A4]
gi|40741866|gb|EAA61056.1| hypothetical protein AN4978.2 [Aspergillus nidulans FGSC A4]
gi|259482149|tpe|CBF76354.1| TPA: pre-RNA splicing factor Srp2, putative (AFU_orthologue;
AFUA_3G10100) [Aspergillus nidulans FGSC A4]
Length = 296
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR-SIDET 106
RLY+GN+P VT+ ++ E F+ H +G +I L F F+E+ ++D
Sbjct: 8 RLYLGNLPRNVTKQDIEEHFS--THGTG---------KITEIKLMNGFGFIEYEDAMDAR 56
Query: 107 TQAMAFDGINFKGQSLKI---RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
AF G +FKG+ L + R P + P TD + P I ++ I
Sbjct: 57 DIVPAFHGSDFKGERLTVQFARGPRRKENFPVPTDRPNLPRPRRTI--------FRMIIS 108
Query: 164 GLPNYLNED-QAIAGLNGMQL 183
GLP +D + A +G+ +
Sbjct: 109 GLPETSWQDLKDFARQSGLDV 129
>gi|28703790|gb|AAH47322.1| Similar to expressed sequence AI450757, partial [Homo sapiens]
Length = 386
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
S I R +YVGN+ T D+++EFF Q + + AG+ + FAF+
Sbjct: 175 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 227
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + +A+AF+G+ F + LKI
Sbjct: 228 EFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|326428919|gb|EGD74489.1| hypothetical protein PTSG_05853 [Salpingoeca sp. ATCC 50818]
Length = 481
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
++VGN+PF VTE+E+ F++ ++G+ + + VL + K FA++ F + +
Sbjct: 226 VFVGNLPFDVTEEELYAAFDEAGTVAGV-RVIRDKVL----RVGKGFAYVSFALEESVSL 280
Query: 109 AMAFDGINFKGQSLKIRR 126
A+ DG + + ++++R
Sbjct: 281 ALLLDGKKLRTREMRVQR 298
>gi|9910564|ref|NP_064477.1| splicing regulatory glutamine/lysine-rich protein 1 [Rattus
norvegicus]
gi|37537914|sp|Q9JKL7.1|SREK1_RAT RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=SR-related protein of 86 kDa; AltName:
Full=Serine/arginine-rich-splicing regulatory protein
86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12
gi|7158880|gb|AAF37578.1|AF234765_1 serine-arginine-rich splicing regulatory protein SRRP86 [Rattus
norvegicus]
Length = 494
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T A P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 35 IPAAALDPNIT-ALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 93
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 94 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|346468341|gb|AEO34015.1| hypothetical protein [Amblyomma maculatum]
Length = 273
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 109
+VGN+P GV + ++ E F+ G+ + V + + K + ++EF +D +A
Sbjct: 36 FVGNLPDGVVQSDIDEIFH------GIKIKSTRLVRDKETDKFKGYCYVEFFDLDSLKEA 89
Query: 110 MAFDGINFKGQSLKI 124
+ FD + +G+SL++
Sbjct: 90 LEFDSADLQGRSLRV 104
>gi|342879218|gb|EGU80475.1| hypothetical protein FOXB_09032 [Fusarium oxysporum Fo5176]
Length = 554
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 50 YVGNIPFGVTEDEMMEFFNQ----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
++GN+ + VT D + E+ + L + ++ K F ++EF ++D
Sbjct: 83 HLGNLSYDVTNDAVGEYLADCGVVNVRL----------IEDRELQRPKGFGYVEFETLDG 132
Query: 106 TTQAMAFDGINFKGQSLKIR 125
+A+ FDG NF G+ +KI+
Sbjct: 133 LKKALTFDGENFNGRMIKIK 152
>gi|194893839|ref|XP_001977950.1| GG17959 [Drosophila erecta]
gi|190649599|gb|EDV46877.1| GG17959 [Drosophila erecta]
Length = 672
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLYVGN+ +T+DE+ E F +S + NLDKNF FL+
Sbjct: 285 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 333
Query: 108 QA-MAFDGINFKGQSLKIR 125
+A A DG KG+ L++R
Sbjct: 334 KAKRALDGSMRKGRQLRVR 352
>gi|224080644|ref|XP_002306193.1| predicted protein [Populus trichocarpa]
gi|222849157|gb|EEE86704.1| predicted protein [Populus trichocarpa]
Length = 348
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
ARRLYVGN+ F +TED++ + F + L Q + C K F F++F +++
Sbjct: 69 ARRLYVGNLHFNITEDQLRQVF-EPFGAVELVQLPHDESGHC-----KGFGFVQFARLED 122
Query: 106 TTQAMAFDG-INFKGQSLKI 124
A+ +G + G+ +K+
Sbjct: 123 ARNALNLNGQVEIAGRPIKV 142
>gi|224103159|ref|XP_002312948.1| predicted protein [Populus trichocarpa]
gi|222849356|gb|EEE86903.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA 80
++ TT A+ P G ARRLY+GN+ F +TED++ + F + L Q
Sbjct: 77 LVQSTTAVASGGLIGPYTGG-----ARRLYIGNLHFNITEDQLRQVF-EPFGAVELVQLP 130
Query: 81 GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDG-INFKGQSLKI 124
+ C K F F++F +++ A+ +G + G+ +K+
Sbjct: 131 HDEGGHC-----KGFGFVQFARLEDARNALNLNGQVEIAGRPIKV 170
>gi|126717485|gb|AAI33469.1| PABPN1 protein [Bos taurus]
Length = 296
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 171 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>gi|443906773|gb|AGD79327.1| RH34608p1 [Drosophila melanogaster]
Length = 740
Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLYVGN+ +T+DE+ E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 108 QA-MAFDGINFKGQSLKIR 125
+A A DG KG+ L++R
Sbjct: 352 KAKRALDGSMRKGRQLRVR 370
>gi|440893202|gb|ELR46056.1| Polyadenylate-binding protein 2, partial [Bos grunniens mutus]
Length = 189
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 54 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 107
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 108 SVRTSLALDESLFRGRQIKV 127
>gi|340708632|ref|XP_003392926.1| PREDICTED: hrp65 protein-like [Bombus terrestris]
Length = 579
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 19/88 (21%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL--EFRSIDE 105
RLY+GN+ VTE+E+ + F Q +S L +N +KNFAFL ++R ++
Sbjct: 160 RLYIGNLSNDVTEEEIQQIFQQYGEISELF-----------VNKEKNFAFLRMDYR-VNA 207
Query: 106 TTQAMAFDG----INFKGQSLKIR-RPH 128
DG N KG++LK+R PH
Sbjct: 208 EKAKHELDGKNVFTNSKGRALKVRFAPH 235
>gi|189239479|ref|XP_975440.2| PREDICTED: similar to polyadenylate binding protein 2 [Tribolium
castaneum]
Length = 222
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 98 RSIYVGNVDYGATAEEL------EQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDRDS 151
Query: 106 TTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 152 VQTAMAMDESLFRGRPIKV 170
>gi|348516557|ref|XP_003445805.1| PREDICTED: polyadenylate-binding protein 2-like [Oreochromis
niloticus]
Length = 240
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDE 105
R +YVGN+ +G T DE+ ++H +G +L + + K FA++EF D
Sbjct: 60 RSIYVGNVDYGATADEL------EIHFNGCGPVNRVTILCDRFSGHPKGFAYIEFSDRDS 113
Query: 106 TTQAMAFDGINFKGQSLKI 124
A+ F+G+ LK+
Sbjct: 114 VQSAIGLHETLFRGRVLKV 132
>gi|148686566|gb|EDL18513.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Mus
musculus]
Length = 626
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 186 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 242
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 243 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 272
>gi|426246379|ref|XP_004016972.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Ovis aries]
Length = 632
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|74217177|dbj|BAC34905.2| unnamed protein product [Mus musculus]
Length = 513
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 151 IPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 209
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 210 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 256
>gi|47575772|ref|NP_001001230.1| polyadenylate-binding protein 2 [Xenopus (Silurana) tropicalis]
gi|82237242|sp|Q6NVP7.1|PABP2_XENTR RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|45708904|gb|AAH67958.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
gi|89268254|emb|CAJ82538.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
Length = 296
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 162 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKE 215
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 216 SVRTSLALDESLFRGRQIKV 235
>gi|376297103|ref|YP_005168333.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
gi|323459665|gb|EGB15530.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
Length = 86
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
+ +YVGNIPFG TE+++ F + +S + + + + F F+E D
Sbjct: 2 KSIYVGNIPFGATENDVRNLFGEYGDVSSVKL-----IQDHETGRFRGFGFVEMEDADAA 56
Query: 107 TQAMAFDGINFKGQSLKIRRPHDYQPTP 134
+ A DG G+ LK+ P P
Sbjct: 57 SAIEALDGHEMSGRPLKVNEAKPRAPRP 84
>gi|149059244|gb|EDM10251.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Rattus
norvegicus]
Length = 494
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T A P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 35 IPAAALDPNIT-ALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 93
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 94 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>gi|148686564|gb|EDL18511.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Mus
musculus]
Length = 223
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQ--QMHLSGLAQAAGNPVLACQINLDKNFA 96
S I R +YVGN+ T D+++EFF Q ++ +A P FA
Sbjct: 87 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPT---------RFA 137
Query: 97 FLEFRSIDETTQAMAFDGINFKGQSLKI 124
F+EF + +A+AF+G+ F + LKI
Sbjct: 138 FVEFADQNSVPRALAFNGVMFGDRPLKI 165
>gi|351713063|gb|EHB15982.1| Splicing factor, arginine/serine-rich 12 [Heterocephalus glaber]
Length = 535
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSIDET 106
+LYVGN+P+ DE+ FN H + A VL+ + ++ +AFL F S E
Sbjct: 205 KLYVGNLPWSTKPDELRNLFN---HFGIVVSAR---VLSDRKGGKNRTYAFLSFLSDAER 258
Query: 107 TQAMAFDGINFKGQSLKIRRPHDYQPT 133
A++ +G F + L ++R + +P+
Sbjct: 259 DAALSMNGTEFYDRMLVVKRGVEKRPS 285
>gi|193787205|dbj|BAG52411.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
S I R +YVGN+ T D+++EFF Q + + AG+ + FAF+
Sbjct: 175 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 227
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + +A+AF+G+ F + LKI
Sbjct: 228 EFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|329663695|ref|NP_001193066.1| splicing regulatory glutamine/lysine-rich protein 1 [Bos taurus]
Length = 632
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|440908499|gb|ELR58509.1| Splicing factor, arginine/serine-rich 12, partial [Bos grunniens
mutus]
Length = 534
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 69 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 125
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 126 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 155
>gi|59802584|gb|AAX07527.1| unknown [Prosthecobacter dejongeii]
Length = 111
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQ-----QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
++YVGN+PF E E+ FN MHL + A G P + FAF+ S
Sbjct: 6 KMYVGNLPFTAMESELRALFNDYGTVTDMHLP-MDHATGRP---------RGFAFVTMDS 55
Query: 103 IDETTQAM-AFDGINFKGQSLKIR--RPHDYQP 132
+A+ A +G +F G+SL I RP + +P
Sbjct: 56 AMAMNEAITALNGKDFGGRSLTINEARPKEDRP 88
>gi|320103893|ref|YP_004179484.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
gi|319751175|gb|ADV62935.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
Length = 104
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS-IDET 106
+LYVGN+P+ TED++++ F++ + + ++ + N + F F+E R+ E
Sbjct: 2 KLYVGNLPYDTTEDQLIDVFSEYGEV-----VSAQIMIDRETNRSRGFGFIEMRTGAQEA 56
Query: 107 TQAMAFDGINFKGQSLKIRRPHDYQP 132
+A+ +G +F G+SL + +P
Sbjct: 57 IEAL--NGQDFHGRSLTVNEARPREP 80
>gi|384249045|gb|EIE22527.1| hypothetical protein COCSUDRAFT_66269 [Coccomyxa subellipsoidea
C-169]
Length = 303
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 26/130 (20%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA--AGNPVLACQINLDKNFAFLEFRSID 104
R +YVGN+ V E+ +M F H + Q AG+P + D +AF+EF + +
Sbjct: 6 RTIYVGNVGKEVDENALMALFG---HCGTVTQIRIAGDP------SYDTRYAFIEFTTPE 56
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK-IFIG 163
E+ AM DG+ + +++ + A GV+ + PD + I IG
Sbjct: 57 ESQTAMMLDGMMVFERQIRV-------------NMARGGSGPGVVRSNDPDRVQRTIHIG 103
Query: 164 GLP-NYLNED 172
GLP + L+E+
Sbjct: 104 GLPFDELSEE 113
>gi|83314770|ref|XP_730505.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490246|gb|EAA22070.1| synthetic antigen of P.falciparum, putative [Plasmodium yoelii
yoelii]
Length = 617
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN----FAFLEFRSID 104
L++GNIPF ++E+E+ E LS + + + + ++DKN FAF E++ I+
Sbjct: 9 LWIGNIPFDLSENELHEI------LSRVGEVVN---VRIKYDIDKNVSKGFAFCEYKDIE 59
Query: 105 ETTQAMAF-DGINFKGQSLKI 124
A+ + +G +G+ LK+
Sbjct: 60 TCMLALKYLNGYEIRGRKLKL 80
>gi|345794152|ref|XP_544361.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Canis lupus familiaris]
Length = 626
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|218885302|ref|YP_002434623.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347730840|ref|ZP_08863950.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
gi|218756256|gb|ACL07155.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347520346|gb|EGY27481.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
Length = 88
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+++LYVGN+PF +E ++ F+ + +A ++ + + F F+E
Sbjct: 2 SKKLYVGNLPFSSSESDLRALFSNHGEVQSVAL-----IMDRETGRPRGFGFVEMDDDGA 56
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQP 132
A DG +F+G+SLK+ + P
Sbjct: 57 RAAMEALDGRDFQGRSLKVNEAQERAP 83
>gi|344242620|gb|EGV98723.1| Polyadenylate-binding protein 2 [Cricetulus griseus]
Length = 244
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 82 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 135
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 136 SVRTSLALDESLFRGRQIKV 155
>gi|301767860|ref|XP_002919343.1| PREDICTED: hypothetical protein LOC100466086 [Ailuropoda
melanoleuca]
gi|281341776|gb|EFB17360.1| hypothetical protein PANDA_007970 [Ailuropoda melanoleuca]
Length = 628
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|321477676|gb|EFX88634.1| hypothetical protein DAPPUDRAFT_206317 [Daphnia pulex]
Length = 222
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR ++VGN+ +G T +E+ + H G +L + + K FA++EF D
Sbjct: 96 ARSVFVGNVDYGATAEEL------EQHFHGCGSINRVTILCNKWDGQPKGFAYIEFGDKD 149
Query: 105 ETTQAMAFDGINFKGQSLKI 124
AMA D F+G+ +K+
Sbjct: 150 SVQTAMALDESLFRGRQIKV 169
>gi|350412928|ref|XP_003489819.1| PREDICTED: hrp65 protein-like [Bombus impatiens]
Length = 571
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 19/88 (21%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL--EFRSIDE 105
RLY+GN+ VTE+E+ + F Q +S L +N +KNFAFL ++R ++
Sbjct: 152 RLYIGNLSNDVTEEEIQQIFQQYGEISELF-----------VNKEKNFAFLRMDYR-VNA 199
Query: 106 TTQAMAFDG----INFKGQSLKIR-RPH 128
DG N KG++LK+R PH
Sbjct: 200 EKAKHELDGKNVFTNSKGRALKVRFAPH 227
>gi|297294417|ref|XP_001087835.2| PREDICTED: hypothetical protein LOC697731 isoform 1 [Macaca
mulatta]
Length = 516
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
S I R +YVGN+ T D+++EFF Q + + AG+ + FAF+
Sbjct: 175 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 227
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + +A+AF+G+ F + LKI
Sbjct: 228 EFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|410465997|ref|ZP_11319150.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409980981|gb|EKO37622.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 97
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLE 99
+++LYVGN+PF EDE+ + F AA V + ++ +D+ F F+E
Sbjct: 2 SKKLYVGNLPFSTNEDEIRDLF-----------AAYGDVTSVKLIVDRETGRLRGFGFVE 50
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
+G +F G+ L++ + QP G
Sbjct: 51 MGDDGADAAMQGLNGKDFGGRDLRVNEAEERQPRAG 86
>gi|281353092|gb|EFB28676.1| hypothetical protein PANDA_022375 [Ailuropoda melanoleuca]
Length = 152
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 23 PETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN 82
P + A + + + AR +YVGN+ +G T +E+ + H G
Sbjct: 6 PHHSFFFKAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL------EAHFHGCGSVNRV 59
Query: 83 PVLACQIN-LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+L + + K FA++EF + ++A D F+G+ +K+
Sbjct: 60 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 102
>gi|24642480|ref|NP_727962.1| no on or off transient A, isoform B [Drosophila melanogaster]
gi|22832361|gb|AAN09398.1| no on or off transient A, isoform B [Drosophila melanogaster]
Length = 742
Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLYVGN+ +T+DE+ E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 108 QAM-AFDGINFKGQSLKIR 125
+A A DG KG+ L++R
Sbjct: 352 KAKRALDGSMRKGRQLRVR 370
>gi|393222716|gb|EJD08200.1| hypothetical protein FOMMEDRAFT_138161 [Fomitiporia mediterranea
MF3/22]
Length = 670
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 19 NVIIPETTVAAAAAAAV-PVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA 77
N+ +P T + + A+ +GS AR +YVGN+P + DE++ +H L
Sbjct: 182 NLNVPMTPTSGYSPVALNAALGSAGNATARTVYVGNLPSTASVDELLNL----VHFGPLE 237
Query: 78 QAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT 137
P +C +FL+ + ++ GQ LKI +P+P
Sbjct: 238 SIRVLPEKSCVF-----LSFLDGATAAAFHADATVKKLSLHGQELKIGWG---KPSP--- 286
Query: 138 DNAAVAVPAGV-ISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVG 196
VP+ V +S ++ ++IGGL + E+Q L+ L D+ IV+ ++G
Sbjct: 287 ------VPSQVALSIQQSNASRNVYIGGLDENMTEEQLRDDLSRFGLIDQVKIVRDKNIG 340
>gi|410948709|ref|XP_003981073.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Felis catus]
Length = 626
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|195569859|ref|XP_002102926.1| GD19237 [Drosophila simulans]
gi|194198853|gb|EDX12429.1| GD19237 [Drosophila simulans]
Length = 419
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|196005405|ref|XP_002112569.1| hypothetical protein TRIADDRAFT_56724 [Trichoplax adhaerens]
gi|190584610|gb|EDV24679.1| hypothetical protein TRIADDRAFT_56724 [Trichoplax adhaerens]
Length = 316
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 37 VVGSTITRQA--RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-- 92
+ +TI+R+ R ++VGNIP+ TE+++ + F + PV++ ++ D
Sbjct: 1 MASATISRERSLRSVFVGNIPYEATEEQLKDIF-----------GSAGPVVSFRLVYDRE 49
Query: 93 ----KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F EF+ + AM G G+SL++
Sbjct: 50 SGKPKGYGFCEFQDKETALSAMRNLSGYELNGRSLRV 86
>gi|431907792|gb|ELK11399.1| Splicing factor, arginine/serine-rich 12 [Pteropus alecto]
Length = 630
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|195383378|ref|XP_002050403.1| GJ22134 [Drosophila virilis]
gi|194145200|gb|EDW61596.1| GJ22134 [Drosophila virilis]
Length = 224
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G + +E+ + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEY 149
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
A+A + F+G+ +K+ +P T+ A G + V H F G
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRG 207
>gi|194900156|ref|XP_001979623.1| GG22991 [Drosophila erecta]
gi|190651326|gb|EDV48581.1| GG22991 [Drosophila erecta]
Length = 416
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|301792821|ref|XP_002931377.1| PREDICTED: polyadenylate-binding protein 2-like [Ailuropoda
melanoleuca]
Length = 178
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 43 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 96
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 97 SVRTSLALDESLFRGRQIKV 116
>gi|194374387|dbj|BAG57089.1| unnamed protein product [Homo sapiens]
Length = 168
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 43 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 96
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 97 SVRTSLALDESLFRGRQIKV 116
>gi|348553835|ref|XP_003462731.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cavia porcellus]
Length = 556
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 19/87 (21%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-------DKNFAFLEFR 101
+YVG++P +TE+E+++ F+Q +PVL+ QI + +A++ +
Sbjct: 30 VYVGDLPANITEEELIKVFSQ-----------ASPVLSVQIKFPSRSVKGPRAYAYIAYS 78
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRRP 127
S D+ +A+ ++ F G+ ++ +P
Sbjct: 79 SADKVDEAIREYNHTKFAGKPCRVMKP 105
>gi|194743216|ref|XP_001954096.1| GF16912 [Drosophila ananassae]
gi|190627133|gb|EDV42657.1| GF16912 [Drosophila ananassae]
Length = 415
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|149063931|gb|EDM14201.1| poly(A) binding protein, nuclear 1, isoform CRA_c [Rattus
norvegicus]
Length = 194
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 59 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 112
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 113 SVRTSLALDESLFRGRQIKV 132
>gi|149063930|gb|EDM14200.1| poly(A) binding protein, nuclear 1, isoform CRA_b [Rattus
norvegicus]
Length = 184
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 59 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 112
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 113 SVRTSLALDESLFRGRQIKV 132
>gi|8918490|dbj|BAA97656.1| RNA-binding protein [Candida boidinii]
Length = 255
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKNFAFLEFRS 102
R +Y+GN+ + T DE+ + F ++ + + GNP K FA++EF
Sbjct: 124 RSVYIGNLDYAATPDELQKHFESCGSINRITIPTNKFTGNP---------KGFAYIEFSD 174
Query: 103 IDETTQAMAFDGINFKGQSLKI 124
QA++ + FKG++LKI
Sbjct: 175 ASYVPQALSLNDSLFKGRNLKI 196
>gi|448101244|ref|XP_004199515.1| Piso0_001296 [Millerozyma farinosa CBS 7064]
gi|359380937|emb|CCE81396.1| Piso0_001296 [Millerozyma farinosa CBS 7064]
Length = 213
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 26/90 (28%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSG----------LAQAAGNPVLACQINLDKNF 95
+R +Y+GN+ +G T E+ Q H SG L + +G+P K +
Sbjct: 88 SRSIYIGNVDYGATPLEL------QQHFSGCGVVNRVTIPLNKFSGSP---------KGY 132
Query: 96 AFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
A+LEF ID +A+A DG F+ + +K+
Sbjct: 133 AYLEFGDIDAVNKAIATLDGSTFRDREIKV 162
>gi|431907175|gb|ELK11241.1| Polyadenylate-binding protein 2 [Pteropus alecto]
Length = 208
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 73 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 126
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 127 SVRTSLALDESLFRGRQIKV 146
>gi|148686563|gb|EDL18510.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Mus
musculus]
Length = 519
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 79 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 135
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 136 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 165
>gi|428170953|gb|EKX39874.1| hypothetical protein GUITHDRAFT_154318 [Guillardia theta CCMP2712]
Length = 270
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 47 RRLYVGNIPFGVTEDEMMEFF-------NQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
RR+++G +PF TE ++ + F N ++ ++ ++ AG F FL
Sbjct: 25 RRVFLGGLPFKATEKDIKKMFESCGAIENIELPMNADSRPAG-------------FGFLT 71
Query: 100 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHK 159
F+ D +A+A DG G+ +K++ + + G P PD
Sbjct: 72 FKDADSVAKAVAMDGQELMGRWVKVKEADGTEGSAGKKPFTPNREP-----KPKPDGCTT 126
Query: 160 IFIGGLPNYLNED 172
IF+G L ++ED
Sbjct: 127 IFMGNLSWDVDED 139
>gi|195452858|ref|XP_002073531.1| GK14167 [Drosophila willistoni]
gi|194169616|gb|EDW84517.1| GK14167 [Drosophila willistoni]
Length = 401
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 10 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 58
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 59 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 90
>gi|218437654|ref|YP_002375983.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
gi|218170382|gb|ACK69115.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
Length = 110
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+YVGNIP+ VT+D++ E F + G + PV + + FAF++ + D+
Sbjct: 3 IYVGNIPYQVTQDDIKEVFGE----YGTVKQVKLPVDRESGRV-RGFAFVDLDTEDQENS 57
Query: 109 AM-AFDGINFKGQSLKIRR 126
A+ A DG + G+ LK+ +
Sbjct: 58 AIEALDGAEWMGRELKVSK 76
>gi|165761289|pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
gi|165761291|pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
gi|165761292|pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
gi|165761293|pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
gi|165761294|pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF
Sbjct: 4 DARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 57
Query: 104 DETTQAMAFDGINFKGQSLKI 124
+ ++A D F+G+ +K+
Sbjct: 58 ESVRTSLALDESLFRGRQIKV 78
>gi|194223833|ref|XP_001492097.2| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Equus caballus]
Length = 628
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|195455316|ref|XP_002074665.1| GK23192 [Drosophila willistoni]
gi|194170750|gb|EDW85651.1| GK23192 [Drosophila willistoni]
Length = 225
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G + +E+ + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEY 149
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGL 165
A+A + F+G+ +K+ +P T+ A G + V H F G
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGAR 209
Query: 166 PNYLNEDQAIAGLNG 180
+AI G G
Sbjct: 210 -------RAIRGYRG 217
>gi|195121132|ref|XP_002005075.1| GI19259 [Drosophila mojavensis]
gi|193910143|gb|EDW09010.1| GI19259 [Drosophila mojavensis]
Length = 224
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G + +E+ + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEY 149
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
A+A + F+G+ +K+ +P T+ A G + V H F G
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRG 207
>gi|194757557|ref|XP_001961031.1| GF13666 [Drosophila ananassae]
gi|190622329|gb|EDV37853.1| GF13666 [Drosophila ananassae]
Length = 224
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G + +E+ + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
A+A + F+G+ +K+ +P T+ A G + V H F G
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGTFRGRGARVSRACCHSTFRG 207
>gi|171474005|gb|AAX31042.2| SJCHGC09749 protein [Schistosoma japonicum]
gi|226468246|emb|CAX69800.1| Polyadenylate-binding protein 2 [Schistosoma japonicum]
gi|226489703|emb|CAX75002.1| Polyadenylate-binding protein 2 [Schistosoma japonicum]
gi|226489705|emb|CAX75003.1| Polyadenylate-binding protein 2 [Schistosoma japonicum]
gi|226489707|emb|CAX75004.1| Polyadenylate-binding protein 2 [Schistosoma japonicum]
Length = 214
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T DE+ + H G +L + K FA++EF + D
Sbjct: 86 RSVYVGNVDYGSTADEL------EAHFRGCGPINRVTILCNKFTGHPKGFAYIEFDTRDA 139
Query: 106 TTQAMAFDGINFKGQSLKI 124
A+A D +F+ + LK+
Sbjct: 140 VEAAIALDDSSFRSRQLKV 158
>gi|449513509|ref|XP_004164344.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 432
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
A ++YVG IP+ TED++ FF ++ + + + + + A L F++
Sbjct: 187 ATKVYVGGIPYYSTEDDICSFFESCGTITEI-----DCMKFPESGKFRGIAILSFKTEAA 241
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGL 165
+A+A DG + G LK+ QP G N A G++ + ++I+IG L
Sbjct: 242 AKRALACDGADMGGLFLKV------QPYKGTRKNRAADFSPGLV-----EGYNRIYIGNL 290
Query: 166 PNYLNED 172
+ ED
Sbjct: 291 SWDVTED 297
>gi|449459934|ref|XP_004147701.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 432
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
A ++YVG IP+ TED++ FF ++ + + + + + A L F++
Sbjct: 187 ATKVYVGGIPYYSTEDDICSFFESCGTITEI-----DCMKFPESGKFRGIAILSFKTEAA 241
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGL 165
+A+A DG + G LK+ QP G N A G++ + ++I+IG L
Sbjct: 242 AKRALACDGADMGGLFLKV------QPYKGTRKNRAADFSPGLV-----EGYNRIYIGNL 290
Query: 166 PNYLNED 172
+ ED
Sbjct: 291 SWDVTED 297
>gi|407835043|gb|EKF99127.1| hypothetical protein TCSYLVIO_009959 [Trypanosoma cruzi]
Length = 871
Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
I +++RR+ +GNIP+ TED++ +F + L G +A P L K AF++F
Sbjct: 312 IVQESRRIRLGNIPYIATEDDVKQFASS---LVGSVEAVHIP-LTKDTRQSKGAAFVKFV 367
Query: 102 SIDETTQAMAF-DGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAG 147
+++ +A++ G F G+ L++ D T + + A AG
Sbjct: 368 RVEDAVRALSLCRGAVFMGRLLRVSAAEDDPYTKKLESHGDAAAMAG 414
>gi|328768585|gb|EGF78631.1| hypothetical protein BATDEDRAFT_90384 [Batrachochytrium
dendrobatidis JAM81]
Length = 582
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 22 IPETTVAAAAAAAVPVV-GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA 80
P TT+A A A+P + G LYVGN+P E+E+ + F Q +
Sbjct: 423 FPGTTMATNNAGAIPFISGMDQNPPCNTLYVGNLPHDALEEELRQIFTVQ---------S 473
Query: 81 GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK--IRRPHDYQPTPGVTD 138
G L + + F+EF S+D T A+ N S K IR + P GV
Sbjct: 474 GFKRLCFRTRANGPMCFVEFESVDYATAALFQLYGNHLSNSTKGGIRLSYSKNPL-GVRQ 532
Query: 139 NAAVAVP 145
N + VP
Sbjct: 533 NRSAVVP 539
>gi|294873838|ref|XP_002766762.1| eukaryotic translation initiation factor 4B/4H, putative [Perkinsus
marinus ATCC 50983]
gi|239867925|gb|EEQ99479.1| eukaryotic translation initiation factor 4B/4H, putative [Perkinsus
marinus ATCC 50983]
Length = 373
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+YVG +P+ +EDE+ FF + + ++ + K F +L+F ++++
Sbjct: 67 VYVGGLPYSASEDELGFFFLDR----NITPVGVRIIMDRETKKSKGFGYLDFATVEDYEA 122
Query: 109 AMAFDGINFKGQSLKI 124
A+ G NF G+++++
Sbjct: 123 ALQMSGANFGGRTIRV 138
>gi|195037535|ref|XP_001990216.1| GH18352 [Drosophila grimshawi]
gi|193894412|gb|EDV93278.1| GH18352 [Drosophila grimshawi]
Length = 430
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|350594366|ref|XP_003134051.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1,
partial [Sus scrofa]
Length = 587
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 40 STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
S I R +YVGN+ T D+++EFF Q + + AG+ + FAF+
Sbjct: 213 SKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR------FAFV 265
Query: 99 EFRSIDETTQAMAFDGINFKGQSLKI 124
EF + +A+AF+G+ F + LKI
Sbjct: 266 EFADQNSVPRALAFNGVMFGDRPLKI 291
>gi|426246385|ref|XP_004016975.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 4 [Ovis aries]
Length = 515
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNIPFGVTE-DEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 51 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 107
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 108 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 137
>gi|354474059|ref|XP_003499249.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cricetulus griseus]
gi|344246968|gb|EGW03072.1| Splicing factor, arginine/serine-rich 12 [Cricetulus griseus]
Length = 611
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 170 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 226
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 227 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 256
>gi|119571716|gb|EAW51331.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Homo
sapiens]
Length = 623
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|402871715|ref|XP_003899799.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Papio anubis]
gi|387541364|gb|AFJ71309.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a
[Macaca mulatta]
Length = 626
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|195108753|ref|XP_001998957.1| GI23336 [Drosophila mojavensis]
gi|193915551|gb|EDW14418.1| GI23336 [Drosophila mojavensis]
Length = 428
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------K 93
S + + R ++VGNIP+ TE+++ E F++ PVL+ ++ D K
Sbjct: 9 SIMDKSMRSVFVGNIPYEATEEKLKEIFSE-----------VGPVLSLKLVFDRESGKPK 57
Query: 94 NFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
F F E++ + AM +G G++L++
Sbjct: 58 GFGFCEYKDQETALSAMRNLNGYEIGGRTLRV 89
>gi|426246381|ref|XP_004016973.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Ovis aries]
gi|426246383|ref|XP_004016974.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Ovis aries]
Length = 516
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNIPFGVTE-DEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 51 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 107
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 108 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 137
>gi|392427255|ref|YP_006468249.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
gi|391357218|gb|AFM42917.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
Length = 82
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
LYVGN+P+ T DE+ EFF+ H+ + + + + F F+E D
Sbjct: 4 LYVGNLPWNTTADELGEFFSNYGHVE-----SSRIITDRETGRSRGFGFIEVGEEDAERM 58
Query: 109 AMAFDGINFKGQSLKI 124
A +G +F G+ L +
Sbjct: 59 AQELNGKDFGGRPLTV 74
>gi|332233718|ref|XP_003266050.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Nomascus leucogenys]
Length = 626
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
>gi|226482504|emb|CAX73851.1| Polyadenylate-binding protein 2 [Schistosoma japonicum]
Length = 214
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G T DE+ + H G +L + K FA++EF + D
Sbjct: 86 RSVYVGNVDYGSTADEL------EAHFRGCGPINRVTILCNKFTGHPKGFAYIEFDTRDA 139
Query: 106 TTQAMAFDGINFKGQSLKI 124
A+A D +F+ + LK+
Sbjct: 140 VEAAIALDDSSFRSRQLKV 158
>gi|426384528|ref|XP_004058814.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Gorilla gorilla gorilla]
Length = 626
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 167 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 223
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 224 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 253
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,707,431,355
Number of Sequences: 23463169
Number of extensions: 155886659
Number of successful extensions: 455482
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 1679
Number of HSP's that attempted gapping in prelim test: 451919
Number of HSP's gapped (non-prelim): 3580
length of query: 231
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 93
effective length of database: 9,121,278,045
effective search space: 848278858185
effective search space used: 848278858185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)