BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2204
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 319 bits (818), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 188/261 (72%), Gaps = 53/261 (20%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T AVPVVGSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDT-----PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNE----------------- 171
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+
Sbjct: 178 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFN 237
Query: 172 ------------------------DQAIAGLNGMQLGDKKLIVQRASVGAK---NASGQQ 204
DQ+IAGLNGMQLGDKKLIVQRASVGAK NA+
Sbjct: 238 LVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT 297
Query: 205 APVQIQVPGLTQVGQAGPATE 225
V +QVPGL+ V +GP TE
Sbjct: 298 QSVMLQVPGLSNVVTSGPPTE 318
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/266 (60%), Positives = 179/266 (67%), Gaps = 53/266 (19%)
Query: 12 AAGQIPANVIIPETTV--AAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T A VPVVGS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASG------ 202
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+
Sbjct: 291 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPST 350
Query: 203 -QQAPVQIQVPGL--TQVGQAGPATE 225
Q PV +QVPGL +QV G TE
Sbjct: 351 INQTPVTLQVPGLMSSQVQMGGHPTE 376
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 152/261 (58%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N AAGQ+P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 153 EYKNMQAAGQVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 202
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 203 FFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 262
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D N+ + V ST+V DS +KIFIGGLPNYL E
Sbjct: 263 RPRDYQPSQNTFDMNSRMPV-----STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 317
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A + +
Sbjct: 318 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTNL 377
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 378 PNSASAIAGIDLSQGAGRATE 398
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 218 bits (556), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 149/261 (57%), Gaps = 56/261 (21%)
Query: 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMME 65
E N A+G +P + +AVPVVG ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 144 EYKNMQASGAVPR----------GSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 193
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL LAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 194 FFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 253
Query: 126 RPHDYQPTPGVTD-NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------- 171
RP DYQP+ D NA + V S++V DS +KIFIGGLPNYL E
Sbjct: 254 RPRDYQPSQNTFDMNARMPV-----SSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPL 308
Query: 172 ---------------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
DQAIAGLNGMQLGDK+L+VQ A +
Sbjct: 309 KAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHL 368
Query: 205 APVQIQVPGLTQVGQAGPATE 225
+ G+ AG ATE
Sbjct: 369 PNSASAIAGIDLSQGAGRATE 389
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 104/222 (46%), Gaps = 56/222 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 234 TRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMR 293
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP P + + AAV + G
Sbjct: 294 SVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNL-NLAAVGLTPGSAG 352
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 353 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 410
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQV 211
D A A LNG+++GDK L V+RA+ GA +Q + + V
Sbjct: 411 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHV 452
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 56/218 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 210 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 269
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVIS 150
S++E + AMA DGI F+G +K+RRP DY QP+P + + AAV + G
Sbjct: 270 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL-NLAAVGLTPGSAG 328
Query: 151 TVVPDSPHKIFIGGLPNYLNE--------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 329 GL--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 386
Query: 172 --DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ GA +Q +
Sbjct: 387 VTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESI 424
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 117/264 (44%), Gaps = 65/264 (24%)
Query: 10 TGAAGQIPA-NVIIPET-----TVAAAAAAAVPVV-----GSTITRQARRLYVGNIPFGV 58
T AAGQ+P N IP +A+ A+PV+ TR ARR+YVG +P
Sbjct: 191 TAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHA 250
Query: 59 TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
E + FF+ M + G G+ V+ IN +K FAF+E RS++E + AMA DGI F
Sbjct: 251 NEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIF 310
Query: 118 KGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPN 167
+G K+RRP DY P+ T + AAV + G + + P +IF+GGLP
Sbjct: 311 EGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGL--EGPDRIFVGGLPY 368
Query: 168 YLNE-----------------------------------------DQAIAGLNGMQLGDK 186
Y E D A A LNG+++GDK
Sbjct: 369 YFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 428
Query: 187 KLIVQRASVGAKNASGQQAPVQIQ 210
L V+RA+ G +Q V +
Sbjct: 429 TLTVRRANQGTTQPKPEQESVLLH 452
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 118/265 (44%), Gaps = 67/265 (25%)
Query: 10 TGAAGQIPA---------NVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGV 58
T AAGQ+P + + P + A +PV T TR ARR+YVG +P
Sbjct: 173 TDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTA 232
Query: 59 TEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117
E + FF+ M+ + G G+ V+ IN +K FAF+E RS++E + AMA DG+ F
Sbjct: 233 NEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIF 292
Query: 118 KGQSLKIRRPHDY-----------QPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
+G +K+RRP DY QP+P + A + P S+ + P +IF+GGLP
Sbjct: 293 EGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPG---SSGGLEGPDRIFVGGLP 349
Query: 167 NYLNEDQ-----------------------------------------AIAGLNGMQLGD 185
Y E Q A A LNG+++GD
Sbjct: 350 YYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGD 409
Query: 186 KKLIVQRASVGAKNASGQQAPVQIQ 210
K L V+RA+ G + +Q V +
Sbjct: 410 KTLTVRRANQGTTQPNPEQESVLLH 434
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 106/223 (47%), Gaps = 62/223 (27%)
Query: 35 VPVVGSTI------TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLAC 87
VP +G + TR ARR+YVG +P E + FFNQ M + G A G+ V+
Sbjct: 254 VPALGQPLAMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNV 313
Query: 88 QINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPTPGV 136
IN DK FAF+E RS++E + AMA DGI F+G +K+RRP DY QP P +
Sbjct: 314 YINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNL 373
Query: 137 TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------------- 171
+ AAV + G + + P +IF+GGLP Y E
Sbjct: 374 -NLAAVGLTPGAGGGL--EGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETG 430
Query: 172 ----------------DQAIAGLNGMQLGDKKLIVQRASVGAK 198
D A A LNG+QLGD+ L V+RA+ GA+
Sbjct: 431 NSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRANQGAE 473
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 100/214 (46%), Gaps = 54/214 (25%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + +FNQ M + G G+ VL IN DK FAF+E R
Sbjct: 203 TRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMR 262
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT---------PGVTDN-AAVAVPAGVIST 151
S++E + AMA DGI F+G +K+RRP DY P+ P N AAV + G
Sbjct: 263 SVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGG 322
Query: 152 VVPDSPHKIFIGGLPNYLNE---------------------------------------- 171
+ + P +IF+GGLP Y E
Sbjct: 323 L--EGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 380
Query: 172 -DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
D A A LNG+++GDK L V+RA+ G+ +Q
Sbjct: 381 TDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQ 414
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 107/239 (44%), Gaps = 54/239 (22%)
Query: 21 IIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQA 79
++P + A V + TR ARR+YVG +P E + FF+Q M + G
Sbjct: 229 MVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAG 288
Query: 80 AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT-- 137
G+ V+ IN +K FAF+E RS++E + AMA DGI +G +K+RRP DY P+ T
Sbjct: 289 PGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLG 348
Query: 138 --------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNE------------------ 171
+ AV + +G ST + P +IF+GGLP Y E
Sbjct: 349 PSQPNPNLNLGAVGLSSG--STGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNL 406
Query: 172 -----------------------DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA GA +Q V
Sbjct: 407 VKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEV 465
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 57/239 (23%)
Query: 12 AAGQIPANVIIPETTVAAAAAAAVPVVGST--ITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AG P +P T + + +P+ T TR ARR+YVG + E + FF+Q
Sbjct: 203 GAGMFPNMFPLP-TGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQ 261
Query: 70 QMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPH 128
M + G G+ V+ IN +K FAF+E RS++E + AM+ DGI F+G +K+RRP
Sbjct: 262 VMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPS 321
Query: 129 DYQPTPGVT----------DNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ----- 173
DY P+ T + AAV + G + + P +IF+GGLP Y E Q
Sbjct: 322 DYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL--EGPDRIFVGGLPYYFTESQVRELL 379
Query: 174 ------------------------------------AIAGLNGMQLGDKKLIVQRASVG 196
A A LNG+++GDK L V+RA+ G
Sbjct: 380 ESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG 438
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--FAFLEFRSIDE 105
RLYVGN+PF +T ++ E F + A N + D++ FAF+ S++E
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAE-------AGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167
Query: 106 TTQAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
+A+ FDG G+++K+ P P G + + + + V DSPHK+++
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPE--VPRGGEREVMSAKIRSTYQGFV--DSPHKLYVAN 223
Query: 165 L 165
L
Sbjct: 224 L 224
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A +PV + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis
elegans GN=rsp-7 PE=3 SV=3
Length = 452
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFRSIDE 105
R +YVGN+P GV +E++E FN A+ A P L C +A++EF
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCA------YAYVEFSQQAS 216
Query: 106 TTQAMAFDGINFKGQSLKIR 125
A+ DG FK + LKI+
Sbjct: 217 VCNALQNDGFEFKERPLKIQ 236
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL V IP ED + F + + + + ++NFA LE +
Sbjct: 195 SRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPETKHFSSVNVCKEENFAILEVAT 254
Query: 103 IDETTQAMAFDGINFKGQ-SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
++ T ++ LK +R +Y P +T + V DS KI+
Sbjct: 255 PEDATFLWGLQSESYSNDVFLKFQRIQNYI-VPQITPEVSQKRSDDYAKNDVLDSKDKIY 313
Query: 162 IGGLPNYLNEDQAIAGLN 179
I LP L EDQ + L
Sbjct: 314 ISNLPLNLGEDQVVELLK 331
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TED+ F + G P IN D+ F F
Sbjct: 71 GEKTYTQRCRLFVGNLPTDITEDDFKRLFER----------YGEPSEVF-INRDRGFGFI 119
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 120 RLESRTLAEIAKA-ELDGTILKSRPLRIR 147
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDK 93
G T+Q RR+YVGN+ + V E+ EF Q GN VL C+I L K
Sbjct: 69 GQKYTQQERRVYVGNLSYQVRWFELKEFMGQ----------VGN-VLNCEILNLPNGLSK 117
Query: 94 NFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
A +E+ + +E A+ F G+ + IR + G + + A G S
Sbjct: 118 GCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSE- 176
Query: 153 VPDSPHKIFIGGLP 166
PD ++F+G LP
Sbjct: 177 -PD--RQLFVGNLP 187
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
RQ +++VGN+P + + E EFF Q + + G+ ++ + F F+ + +
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH----EVEKNAGFGFIIYAAE 217
Query: 104 DETTQAMAFDGINFKGQSLKIR 125
+A+ FDG+ F G+ L ++
Sbjct: 218 KSAMKAVEFDGVEFHGRILTVK 239
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 33 AAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD 92
A + V + R R ++VGNIP+ TE+++ + F++ PV++ ++ D
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV-----------GPVVSFRLVYD 50
Query: 93 ------KNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 124
K + F E++ + AM +G F G++L++
Sbjct: 51 RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 161 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKE 214
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 215 SVRTSLALDESLFRGRQIKV 234
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 171 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 167 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 220
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 221 SVRTSLALDESLFRGRQIKV 240
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + + K FA++EF +
Sbjct: 171 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 225 SVRTSLALDESLFRGRQIKV 244
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T A P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 35 IPAAALDPNIT-ALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 93
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 94 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 162 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKE 215
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 216 SVRTSLALDESLFRGRQIKV 235
>sp|Q04047|NONA_DROME Protein no-on-transient A OS=Drosophila melanogaster GN=nonA PE=1
SV=2
Length = 700
Score = 41.2 bits (95), Expect = 0.006, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLYVGN+ +T+DE+ E F +S + NLDKNF FL+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVDYHPNAE 351
Query: 108 QA-MAFDGINFKGQSLKIR 125
+A A DG KG+ L++R
Sbjct: 352 KAKRALDGSMRKGRQLRVR 370
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 16 IPANVIIPETTVAAAAAAAVPVVG----STITRQARRLYVGNI-PFGVTEDEMMEFFNQQ 70
IPA + P T P++G S I R +YVGN+ T D+++EFF Q
Sbjct: 35 IPAAALDPNITTLGEIPQP-PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQV 93
Query: 71 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
+ + AG+ + FAF+EF + +A+AF+G+ F + LKI
Sbjct: 94 GEVK-FVRMAGDETQPTR------FAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSID 104
AR +YVGN+ +G T +E+ + H G +L + K FA++EF +
Sbjct: 162 ARSIYVGNVDYGATAEEL------EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKE 215
Query: 105 ETTQAMAFDGINFKGQSLKI 124
++A D F+G+ +K+
Sbjct: 216 SVRTSLALDESLFRGRQIKV 235
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 36 PVVG----STITRQARRLYVGNIPFGVTE-DEMMEFFNQQMHLSGLAQAAGNPVLACQIN 90
P++G S I R +YVGN+ T D+++EFF Q + + AG+ +
Sbjct: 51 PLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVK-FVRMAGDETQPTR-- 107
Query: 91 LDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKI 124
FAF+EF + +A+AF+G+ F + LKI
Sbjct: 108 ----FAFVEFADQNSVPRALAFNGVMFGDRPLKI 137
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE++ F + G P IN D+ F F
Sbjct: 73 GEKTYTQRCRLFVGNLPTDITEEDFKRLFER----------YGEPSEVF-INRDRGFGFI 121
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 122 RLESRTLAEIAKA-ELDGTILKSRPLRIR 149
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE++ F + G P IN D+ F F
Sbjct: 73 GEKTYTQRCRLFVGNLPTDITEEDFKRLFER----------YGEPSEVF-INRDRGFGFI 121
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 122 RLESRTLAEIAKA-ELDGTILKSRPLRIR 149
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDE 105
R +YVGN+ +G + +E+ + H G +L + + K FA++EF S +
Sbjct: 96 RSVYVGNVDYGASAEEL------EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEF 149
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
A+A + F+G+ +K+ +P T+ A G + V H F G
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRG 207
>sp|Q5NVM8|RNPS1_PONAB RNA-binding protein with serine-rich domain 1 OS=Pongo abelii
GN=RNPS1 PE=2 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + VT+D +ME F+ G + PV +L K +A++EF + DE
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFS----TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
Query: 108 QAMA-FDGINFKGQSL 122
+A+ DG GQ +
Sbjct: 218 KALKHMDGGQIDGQEI 233
>sp|Q99M28|RNPS1_MOUSE RNA-binding protein with serine-rich domain 1 OS=Mus musculus
GN=Rnps1 PE=2 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + VT+D +ME F+ G + PV +L K +A++EF + DE
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFS----TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
Query: 108 QAMA-FDGINFKGQSL 122
+A+ DG GQ +
Sbjct: 218 KALKHMDGGQIDGQEI 233
>sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1 OS=Macaca
fascicularis GN=RNPS1 PE=2 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + VT+D +ME F+ G + PV +L K +A++EF + DE
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFS----TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
Query: 108 QAMA-FDGINFKGQSL 122
+A+ DG GQ +
Sbjct: 218 KALKHMDGGQIDGQEI 233
>sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 OS=Homo sapiens
GN=RNPS1 PE=1 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + VT+D +ME F+ G + PV +L K +A++EF + DE
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFS----TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
Query: 108 QAMA-FDGINFKGQSL 122
+A+ DG GQ +
Sbjct: 218 KALKHMDGGQIDGQEI 233
>sp|A6QR16|RNPS1_BOVIN RNA-binding protein with serine-rich domain 1 OS=Bos taurus
GN=RNPS1 PE=2 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + VT+D +ME F+ G + PV +L K +A++EF + DE
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFS----TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
Query: 108 QAMA-FDGINFKGQSL 122
+A+ DG GQ +
Sbjct: 218 KALKHMDGGQIDGQEI 233
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1 OS=Rattus norvegicus
GN=Rnps1 PE=2 SV=1
Length = 305
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + VT+D +ME F+ G + PV +L K +A++EF + DE
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFS----TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
Query: 108 QAMA-FDGINFKGQSL 122
+A+ DG GQ +
Sbjct: 218 KALKHMDGGQIDGQEI 233
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE++ F + G P IN D+ F F
Sbjct: 74 GEKTYTQRCRLFVGNLPTDITEEDFKRLF----------ERYGEPSEVF-INRDRGFGFI 122
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 123 RLESRTLAEIAKA-ELDGTILKSRPLRIR 150
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE++ F + G P IN D+ F F
Sbjct: 73 GEKSYTQRCRLFVGNLPTDITEEDFKRLFER----------YGEPSEVF-INRDRGFGFI 121
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E +A DG K + L+IR
Sbjct: 122 RLESRTLAEIAKA-ELDGTILKSRPLRIR 149
>sp|A7TQR2|RRT5_VANPO Regulator of rDNA transcription protein 5 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=RRT5 PE=3
SV=1
Length = 333
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK--NFAFLEFRSIDE 105
R+Y+ N+ + TEDE++E+ LS L + V + N K A+ +F + ++
Sbjct: 32 RIYISNLDYSSTEDELIEYLKDYKPLSVL--VPSHTVRGFRSNHVKPLGIAYADFETPEK 89
Query: 106 TTQAM-AFDGINFKGQSLKIR 125
+A+ A + NFK ++LK++
Sbjct: 90 AREAVEALNETNFKNRNLKVK 110
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE+EM + F + AG I+ DK F F
Sbjct: 68 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK-------YGKAGEVF----IHKDKGFGFI 116
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E + + D + +G+ L++R
Sbjct: 117 RLETRTLAEIAK-VELDNMPLRGKQLRVR 144
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 19/74 (25%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRS 102
++VGNIP+ V+E +M E FNQ PV ++ LD K + F EF
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQ-----------VGPVKTFKLVLDPETGSGKGYGFCEF-- 55
Query: 103 IDETTQAMAFDGIN 116
D T AMA +N
Sbjct: 56 FDSETTAMAVRKLN 69
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE+EM + F + AG I+ DK F F
Sbjct: 66 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK-------YGKAGEVF----IHKDKGFGFI 114
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E + + D + +G+ L++R
Sbjct: 115 RLETRTLAEIAK-VELDNMPLRGKQLRVR 142
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE+EM + F + AG I+ DK F F
Sbjct: 66 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK-------YGKAGEVF----IHKDKGFGFI 114
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E + + D + +G+ L++R
Sbjct: 115 RLETRTLAEIAK-VELDNMPLRGKQLRVR 142
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF- 97
G Q RL+VGN+P +TE+EM + F + AG I+ DK F F
Sbjct: 71 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEK-------YGKAGEVF----IHKDKGFGFI 119
Query: 98 -LEFRSIDETTQAMAFDGINFKGQSLKIR 125
LE R++ E + + D + +G+ L++R
Sbjct: 120 RLETRTLAEIAK-VELDNMPLRGKQLRVR 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,468,151
Number of Sequences: 539616
Number of extensions: 3671036
Number of successful extensions: 10891
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 10698
Number of HSP's gapped (non-prelim): 281
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)