Query psy2204
Match_columns 231
No_of_seqs 193 out of 2085
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 18:52:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-23 2.7E-28 193.9 20.7 162 37-198 166-377 (509)
2 TIGR01659 sex-lethal sex-letha 99.9 2.3E-22 5E-27 176.6 13.7 125 42-198 103-277 (346)
3 TIGR01645 half-pint poly-U bin 99.9 7.5E-22 1.6E-26 182.6 14.9 133 43-196 104-284 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7E-21 1.5E-25 167.7 14.1 121 45-197 2-172 (352)
5 TIGR01622 SF-CC1 splicing fact 99.9 1.8E-20 3.8E-25 170.8 15.8 134 41-194 84-264 (457)
6 KOG0148|consensus 99.8 5E-20 1.1E-24 151.7 13.7 141 46-196 62-238 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.9E-19 1.7E-23 154.7 15.9 73 45-128 88-169 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.7E-18 3.6E-23 159.0 18.5 145 41-196 270-480 (481)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 9.2E-19 2E-23 160.7 16.2 131 45-196 1-174 (481)
10 KOG0117|consensus 99.8 1.3E-18 2.8E-23 151.8 14.8 71 44-125 81-159 (506)
11 KOG0109|consensus 99.8 2.8E-19 6E-24 148.6 9.9 115 47-197 3-151 (346)
12 TIGR01628 PABP-1234 polyadenyl 99.8 1.8E-18 3.9E-23 161.6 15.6 119 48-196 2-167 (562)
13 KOG0131|consensus 99.8 8.1E-19 1.8E-23 137.0 9.7 122 44-196 7-177 (203)
14 TIGR01628 PABP-1234 polyadenyl 99.8 1.4E-18 3E-23 162.4 9.5 139 44-196 176-364 (562)
15 TIGR01648 hnRNP-R-Q heterogene 99.8 1.4E-17 3E-22 154.0 15.3 115 45-197 57-223 (578)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 5.8E-17 1.3E-21 149.5 14.9 82 43-129 292-374 (509)
17 TIGR01648 hnRNP-R-Q heterogene 99.7 5.1E-17 1.1E-21 150.3 14.4 130 43-198 135-309 (578)
18 PLN03134 glycine-rich RNA-bind 99.7 3.9E-17 8.5E-22 126.8 9.4 87 40-131 28-115 (144)
19 KOG0120|consensus 99.7 4.9E-17 1.1E-21 146.4 10.9 220 6-226 136-401 (500)
20 KOG0145|consensus 99.7 1.4E-16 3E-21 130.9 12.1 123 42-196 37-209 (360)
21 KOG0144|consensus 99.7 1.2E-16 2.6E-21 139.1 10.1 134 38-196 26-206 (510)
22 KOG0127|consensus 99.7 2.3E-16 5E-21 140.7 11.7 139 47-196 6-196 (678)
23 TIGR01622 SF-CC1 splicing fact 99.7 2.2E-15 4.7E-20 137.4 16.0 72 46-128 186-264 (457)
24 PLN03120 nucleic acid binding 99.6 2.9E-15 6.2E-20 125.0 10.4 77 46-133 4-83 (260)
25 PF00076 RRM_1: RNA recognitio 99.6 1.8E-15 4E-20 102.1 6.6 64 49-123 1-70 (70)
26 KOG0127|consensus 99.6 1.8E-14 4E-19 128.8 13.5 74 46-130 117-196 (678)
27 KOG0105|consensus 99.6 1.6E-14 3.4E-19 113.5 11.2 119 43-172 3-130 (241)
28 KOG0125|consensus 99.6 7.2E-15 1.6E-19 124.2 8.6 85 37-132 87-176 (376)
29 KOG0121|consensus 99.6 7.5E-15 1.6E-19 108.8 6.7 79 42-131 32-117 (153)
30 KOG0124|consensus 99.6 1.7E-15 3.6E-20 129.7 3.4 136 46-196 113-290 (544)
31 KOG0110|consensus 99.6 1.6E-14 3.5E-19 132.5 9.6 125 49-196 518-693 (725)
32 KOG0145|consensus 99.5 1.5E-13 3.3E-18 113.1 13.1 149 42-195 123-357 (360)
33 PLN03121 nucleic acid binding 99.5 5.4E-14 1.2E-18 115.7 10.4 78 44-132 3-83 (243)
34 KOG0107|consensus 99.5 4.1E-14 8.8E-19 110.2 7.1 73 46-129 10-84 (195)
35 KOG0148|consensus 99.5 7.3E-14 1.6E-18 115.5 8.4 79 41-130 159-238 (321)
36 KOG0149|consensus 99.5 3.2E-14 7E-19 115.5 5.6 76 46-126 12-87 (247)
37 KOG0117|consensus 99.5 4.8E-14 1E-18 123.5 6.9 108 10-130 223-331 (506)
38 PLN03213 repressor of silencin 99.5 9.5E-14 2.1E-18 123.1 8.9 76 42-128 6-86 (759)
39 PF14259 RRM_6: RNA recognitio 99.5 5.6E-14 1.2E-18 95.3 5.8 64 49-123 1-70 (70)
40 TIGR01645 half-pint poly-U bin 99.5 1.3E-13 2.8E-18 128.2 8.4 75 44-129 202-283 (612)
41 KOG4205|consensus 99.4 1.6E-13 3.5E-18 118.2 7.1 129 45-199 5-179 (311)
42 KOG4206|consensus 99.4 1.5E-12 3.3E-17 105.4 11.9 79 44-130 7-90 (221)
43 COG0724 RNA-binding proteins ( 99.4 8.8E-13 1.9E-17 110.0 10.9 129 46-179 115-247 (306)
44 smart00362 RRM_2 RNA recogniti 99.4 9.4E-13 2E-17 88.0 8.9 67 48-125 1-72 (72)
45 TIGR01659 sex-lethal sex-letha 99.4 8.8E-13 1.9E-17 116.1 9.6 75 45-130 192-275 (346)
46 KOG0123|consensus 99.4 1.1E-12 2.3E-17 116.3 9.9 131 41-196 71-246 (369)
47 KOG0114|consensus 99.4 9.6E-13 2.1E-17 94.2 7.7 75 45-130 17-95 (124)
48 KOG0113|consensus 99.4 1.1E-12 2.4E-17 109.8 8.2 82 41-127 96-178 (335)
49 KOG0123|consensus 99.4 2.9E-12 6.2E-17 113.6 10.6 110 47-196 2-153 (369)
50 KOG0111|consensus 99.4 8.2E-13 1.8E-17 106.4 5.0 84 41-135 5-95 (298)
51 KOG0147|consensus 99.3 6.1E-13 1.3E-17 119.2 4.4 145 40-196 173-358 (549)
52 KOG0122|consensus 99.3 2.4E-12 5.1E-17 105.2 7.3 82 44-130 187-269 (270)
53 KOG4207|consensus 99.3 2.5E-12 5.3E-17 102.8 7.1 75 43-128 10-91 (256)
54 KOG0108|consensus 99.3 2.4E-12 5.3E-17 115.4 7.4 80 47-131 19-99 (435)
55 cd00590 RRM RRM (RNA recogniti 99.3 2E-11 4.3E-16 81.9 9.1 67 48-125 1-73 (74)
56 KOG0147|consensus 99.3 4E-12 8.7E-17 114.0 7.2 79 42-125 274-353 (549)
57 KOG0126|consensus 99.3 2E-13 4.3E-18 107.0 -1.7 85 42-131 31-116 (219)
58 smart00360 RRM RNA recognition 99.3 3.3E-11 7.1E-16 80.0 7.9 64 51-125 1-71 (71)
59 KOG4212|consensus 99.2 9.6E-11 2.1E-15 102.8 12.0 75 44-128 42-122 (608)
60 PF13893 RRM_5: RNA recognitio 99.2 3E-11 6.4E-16 78.5 6.4 54 63-127 1-56 (56)
61 KOG0153|consensus 99.2 1.1E-10 2.3E-15 99.8 10.3 81 38-129 220-302 (377)
62 KOG0146|consensus 99.2 1.9E-11 4.1E-16 101.2 5.5 77 41-128 14-99 (371)
63 KOG0144|consensus 99.2 3.7E-11 8E-16 105.2 6.3 79 45-134 123-210 (510)
64 KOG0106|consensus 99.2 8.1E-11 1.7E-15 96.0 7.6 131 47-193 2-168 (216)
65 KOG0130|consensus 99.1 8.9E-11 1.9E-15 88.0 5.6 81 43-128 69-150 (170)
66 KOG0132|consensus 99.1 1.9E-10 4.1E-15 106.9 7.4 78 45-133 420-498 (894)
67 KOG4211|consensus 99.1 1.6E-09 3.5E-14 96.4 12.5 123 44-188 8-134 (510)
68 smart00361 RRM_1 RNA recogniti 99.1 3.1E-10 6.7E-15 77.2 5.4 62 60-125 2-70 (70)
69 KOG0109|consensus 99.0 2.9E-10 6.4E-15 95.2 4.4 75 43-130 75-150 (346)
70 KOG1190|consensus 99.0 3E-08 6.5E-13 86.7 15.1 138 46-194 297-489 (492)
71 KOG4661|consensus 98.9 1.1E-09 2.3E-14 99.0 6.0 82 44-130 403-485 (940)
72 KOG1457|consensus 98.9 4.4E-09 9.6E-14 85.2 8.9 76 44-128 32-116 (284)
73 KOG0129|consensus 98.9 6.6E-09 1.4E-13 93.1 9.6 133 39-179 252-392 (520)
74 KOG1548|consensus 98.9 1.3E-08 2.7E-13 87.3 10.5 81 45-128 133-219 (382)
75 KOG0415|consensus 98.9 2.3E-09 5.1E-14 92.0 5.5 82 42-128 235-317 (479)
76 KOG4212|consensus 98.9 5E-09 1.1E-13 92.2 7.1 76 40-126 530-607 (608)
77 KOG0131|consensus 98.9 3.7E-09 7.9E-14 83.2 5.4 82 45-130 95-177 (203)
78 KOG0146|consensus 98.8 5.4E-09 1.2E-13 86.8 3.9 84 42-130 281-365 (371)
79 KOG4205|consensus 98.8 5.2E-09 1.1E-13 90.4 3.8 83 46-133 97-179 (311)
80 KOG0124|consensus 98.8 1.5E-08 3.2E-13 87.5 6.5 74 44-128 208-288 (544)
81 KOG0110|consensus 98.7 2E-08 4.4E-13 92.9 5.0 75 46-131 613-694 (725)
82 KOG4208|consensus 98.7 2.5E-08 5.5E-13 80.0 4.9 81 42-127 45-127 (214)
83 KOG4209|consensus 98.6 1.9E-08 4.1E-13 83.8 3.5 84 41-130 96-180 (231)
84 KOG0116|consensus 98.6 1.1E-07 2.4E-12 85.1 7.9 80 44-129 286-366 (419)
85 KOG4454|consensus 98.6 1.7E-08 3.8E-13 81.6 1.9 72 44-126 7-83 (267)
86 KOG4660|consensus 98.6 6.3E-08 1.4E-12 87.6 5.2 70 43-123 72-143 (549)
87 KOG0226|consensus 98.6 8.7E-08 1.9E-12 79.2 5.1 79 45-128 189-268 (290)
88 KOG0151|consensus 98.6 1.9E-07 4.2E-12 86.5 7.9 73 45-128 173-255 (877)
89 KOG0533|consensus 98.5 3E-07 6.6E-12 76.7 7.3 74 43-127 80-159 (243)
90 KOG0120|consensus 98.5 4.3E-07 9.3E-12 82.6 8.1 82 42-128 285-367 (500)
91 KOG2193|consensus 98.3 1.4E-07 3.1E-12 82.8 0.5 113 47-193 2-154 (584)
92 KOG1190|consensus 98.2 3.7E-05 8E-10 67.7 13.6 69 48-127 152-225 (492)
93 KOG1457|consensus 98.2 1.5E-06 3.3E-11 70.7 4.3 65 45-118 209-274 (284)
94 PF11608 Limkain-b1: Limkain b 98.2 1.5E-05 3.3E-10 55.3 8.2 67 48-128 4-75 (90)
95 KOG1456|consensus 98.1 9.3E-05 2E-09 64.6 13.4 143 41-194 282-443 (494)
96 KOG0112|consensus 98.0 3.4E-06 7.4E-11 80.3 2.6 136 40-204 366-539 (975)
97 PLN03134 glycine-rich RNA-bind 97.9 8E-05 1.7E-09 57.7 9.3 43 155-197 32-115 (144)
98 KOG0106|consensus 97.8 1.1E-05 2.4E-10 66.1 2.9 70 43-125 96-166 (216)
99 KOG4206|consensus 97.7 0.00022 4.8E-09 58.3 7.8 77 40-127 140-219 (221)
100 KOG0128|consensus 97.6 7.2E-06 1.6E-10 77.7 -1.2 77 38-120 659-736 (881)
101 PF08777 RRM_3: RNA binding mo 97.6 0.00015 3.2E-09 53.2 5.8 55 48-113 3-58 (105)
102 KOG4211|consensus 97.6 0.00014 3.1E-09 65.4 6.5 70 44-125 101-177 (510)
103 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00021 4.6E-09 45.7 5.6 52 47-110 2-53 (53)
104 KOG1365|consensus 97.6 0.00021 4.4E-09 62.7 7.1 121 48-172 163-295 (508)
105 PF04059 RRM_2: RNA recognitio 97.6 0.00057 1.2E-08 49.3 8.1 75 47-128 2-85 (97)
106 KOG1456|consensus 97.6 0.00081 1.8E-08 58.8 10.3 72 45-127 30-104 (494)
107 KOG0105|consensus 97.5 0.00037 8.1E-09 55.5 7.0 69 38-118 107-176 (241)
108 COG5175 MOT2 Transcriptional r 97.5 0.00026 5.6E-09 61.1 6.0 76 46-128 114-201 (480)
109 KOG1995|consensus 97.4 0.00023 5.1E-09 61.8 5.5 90 40-129 60-153 (351)
110 KOG1548|consensus 97.3 0.0018 4E-08 56.1 9.2 79 39-128 258-350 (382)
111 KOG4307|consensus 97.3 0.00071 1.5E-08 63.4 6.9 73 47-125 868-942 (944)
112 KOG4210|consensus 97.3 0.0006 1.3E-08 58.7 5.9 142 44-201 86-269 (285)
113 KOG1855|consensus 97.2 0.0002 4.3E-09 63.5 2.9 61 43-114 228-307 (484)
114 KOG0125|consensus 97.1 0.0008 1.7E-08 57.9 5.2 45 154-198 93-176 (376)
115 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0019 4.1E-08 46.8 6.3 70 46-127 6-89 (100)
116 KOG4210|consensus 97.1 0.00031 6.7E-09 60.5 2.4 75 45-130 183-264 (285)
117 KOG1365|consensus 97.1 0.001 2.3E-08 58.3 5.6 78 45-125 279-357 (508)
118 PF00076 RRM_1: RNA recognitio 97.1 0.0007 1.5E-08 44.7 3.7 30 160-189 1-70 (70)
119 KOG0121|consensus 97.1 0.00043 9.4E-09 51.9 2.6 39 156-194 35-114 (153)
120 PLN03213 repressor of silencin 97.0 0.00074 1.6E-08 61.1 4.4 40 157-196 10-88 (759)
121 KOG2416|consensus 97.0 0.00087 1.9E-08 61.7 4.8 81 38-128 436-520 (718)
122 KOG3152|consensus 97.0 0.00039 8.5E-09 57.9 2.3 77 45-121 73-157 (278)
123 KOG0129|consensus 96.8 0.0027 5.9E-08 57.7 6.2 70 39-113 363-433 (520)
124 KOG4849|consensus 96.8 0.0029 6.2E-08 55.0 6.0 71 45-124 79-156 (498)
125 KOG0108|consensus 96.8 0.0016 3.4E-08 59.1 4.3 39 158-196 19-98 (435)
126 KOG0111|consensus 96.7 0.0013 2.9E-08 53.7 3.1 42 156-197 9-91 (298)
127 KOG0107|consensus 96.6 0.0029 6.3E-08 50.0 4.3 41 157-197 10-86 (195)
128 PF08952 DUF1866: Domain of un 96.6 0.0066 1.4E-07 46.8 5.8 53 62-127 52-104 (146)
129 KOG4676|consensus 96.5 0.0026 5.6E-08 56.0 3.9 77 47-125 8-84 (479)
130 PLN03120 nucleic acid binding 96.5 0.004 8.6E-08 52.6 4.7 38 157-195 4-79 (260)
131 KOG2202|consensus 96.5 0.0021 4.4E-08 53.7 2.7 56 61-127 83-145 (260)
132 KOG0114|consensus 96.3 0.0058 1.3E-07 44.3 3.9 41 155-195 16-94 (124)
133 KOG2314|consensus 96.2 0.0091 2E-07 55.0 5.3 71 44-125 56-139 (698)
134 KOG0226|consensus 96.1 0.0089 1.9E-07 49.9 4.7 130 47-197 97-271 (290)
135 KOG0112|consensus 96.1 0.0093 2E-07 57.6 5.2 81 38-129 447-530 (975)
136 KOG0126|consensus 96.0 0.0021 4.5E-08 51.1 0.6 37 158-194 36-113 (219)
137 COG0724 RNA-binding proteins ( 95.9 0.012 2.5E-07 48.5 4.7 38 157-194 115-193 (306)
138 KOG2253|consensus 95.9 0.0079 1.7E-07 56.3 3.6 67 45-125 39-106 (668)
139 PF14259 RRM_6: RNA recognitio 95.7 0.017 3.6E-07 38.3 3.9 21 160-180 1-21 (70)
140 KOG0128|consensus 95.7 0.0051 1.1E-07 59.0 1.8 75 46-126 736-811 (881)
141 smart00362 RRM_2 RNA recogniti 95.5 0.026 5.6E-07 36.4 4.2 18 173-190 54-71 (72)
142 KOG4285|consensus 95.1 0.17 3.6E-06 43.5 8.6 65 53-129 204-269 (350)
143 KOG1996|consensus 95.0 0.072 1.6E-06 45.5 6.2 61 61-127 301-364 (378)
144 cd00590 RRM RRM (RNA recogniti 94.9 0.056 1.2E-06 35.0 4.5 19 173-191 55-73 (74)
145 PF10309 DUF2414: Protein of u 94.7 0.21 4.5E-06 32.9 6.5 56 47-112 6-62 (62)
146 KOG0130|consensus 94.4 0.052 1.1E-06 41.3 3.4 26 173-198 129-154 (170)
147 KOG4307|consensus 94.3 0.053 1.2E-06 51.3 4.2 82 41-127 429-511 (944)
148 PF11767 SET_assoc: Histone ly 94.2 0.25 5.4E-06 32.9 6.2 54 57-124 11-65 (66)
149 KOG2135|consensus 93.8 0.046 1E-06 49.4 2.6 74 45-129 371-445 (526)
150 PF04847 Calcipressin: Calcipr 93.7 0.19 4.1E-06 40.5 5.8 59 59-128 8-69 (184)
151 PF13893 RRM_5: RNA recognitio 93.6 0.11 2.4E-06 32.8 3.5 21 173-193 36-56 (56)
152 KOG0122|consensus 93.5 0.13 2.8E-06 42.9 4.5 42 155-196 187-269 (270)
153 KOG4676|consensus 93.2 0.024 5.1E-07 50.2 -0.2 63 45-118 150-214 (479)
154 PF11608 Limkain-b1: Limkain b 93.1 0.11 2.3E-06 36.4 3.0 36 159-194 4-75 (90)
155 PLN03121 nucleic acid binding 92.5 0.27 6E-06 41.1 5.2 38 157-194 5-79 (243)
156 PF03880 DbpA: DbpA RNA bindin 92.2 0.47 1E-05 32.2 5.3 61 57-126 12-73 (74)
157 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.07 1.5E-06 42.7 1.3 68 44-119 5-82 (176)
158 KOG2068|consensus 91.9 0.042 9.2E-07 47.7 -0.2 71 47-128 78-161 (327)
159 KOG4207|consensus 91.9 0.17 3.7E-06 41.3 3.2 26 173-198 70-95 (256)
160 KOG0149|consensus 91.9 0.21 4.7E-06 41.4 3.9 44 157-201 12-96 (247)
161 PF08675 RNA_bind: RNA binding 91.8 0.32 7E-06 33.9 4.0 53 48-113 10-63 (87)
162 KOG2318|consensus 91.8 1.1 2.3E-05 41.9 8.5 84 35-125 163-303 (650)
163 KOG0132|consensus 91.6 0.19 4E-06 48.3 3.6 44 157-200 421-499 (894)
164 KOG0113|consensus 91.5 0.45 9.7E-06 40.9 5.4 41 154-194 98-179 (335)
165 KOG2591|consensus 91.3 0.29 6.2E-06 45.4 4.4 69 45-123 174-245 (684)
166 KOG4574|consensus 91.1 0.16 3.6E-06 49.1 2.7 70 49-129 301-373 (1007)
167 KOG0151|consensus 90.8 0.64 1.4E-05 44.4 6.2 73 157-229 174-297 (877)
168 KOG0115|consensus 90.6 0.29 6.3E-06 41.1 3.4 59 47-112 32-92 (275)
169 PF07576 BRAP2: BRCA1-associat 89.6 2.6 5.7E-05 31.0 7.5 67 43-119 10-81 (110)
170 smart00360 RRM RNA recognition 89.3 0.46 1E-05 30.1 3.0 19 173-191 53-71 (71)
171 PF07292 NID: Nmi/IFP 35 domai 86.5 1.3 2.7E-05 31.3 3.9 78 96-195 1-80 (88)
172 PF15023 DUF4523: Protein of u 86.4 2.8 6E-05 32.4 6.0 74 43-129 83-161 (166)
173 KOG0533|consensus 84.8 1.7 3.7E-05 36.6 4.6 41 156-196 82-162 (243)
174 KOG0153|consensus 83.5 4.8 0.0001 35.4 6.9 42 154-195 225-302 (377)
175 smart00361 RRM_1 RNA recogniti 82.0 1.4 3E-05 29.3 2.5 19 173-191 52-70 (70)
176 KOG4410|consensus 81.9 2.5 5.5E-05 36.2 4.5 47 47-103 331-377 (396)
177 KOG0804|consensus 81.0 6.5 0.00014 35.9 6.9 64 46-119 74-142 (493)
178 KOG4660|consensus 80.8 1.4 3.1E-05 40.8 2.9 34 156-189 74-143 (549)
179 KOG4661|consensus 60.3 7.6 0.00016 36.6 2.7 22 173-194 462-483 (940)
180 PF04059 RRM_2: RNA recognitio 59.1 13 0.00028 26.7 3.2 15 158-172 2-16 (97)
181 KOG4483|consensus 58.5 45 0.00098 30.2 7.0 60 43-113 388-447 (528)
182 PF03880 DbpA: DbpA RNA bindin 56.1 9 0.0002 25.7 1.9 29 164-193 46-74 (74)
183 KOG4019|consensus 52.1 18 0.00039 29.0 3.2 79 44-129 8-89 (193)
184 KOG4209|consensus 51.7 15 0.00033 30.7 3.0 23 173-196 158-180 (231)
185 KOG3152|consensus 48.3 19 0.00041 30.6 2.9 15 158-172 75-89 (278)
186 KOG4454|consensus 44.6 4 8.7E-05 33.8 -1.5 77 43-125 77-158 (267)
187 COG5353 Uncharacterized protei 44.0 79 0.0017 24.6 5.5 64 44-107 85-156 (161)
188 KOG4008|consensus 42.9 33 0.00071 28.8 3.5 34 41-74 35-68 (261)
189 PF10567 Nab6_mRNP_bdg: RNA-re 42.0 29 0.00064 30.0 3.2 54 44-108 13-79 (309)
190 KOG2193|consensus 40.9 1.3 2.9E-05 39.9 -5.1 74 45-126 79-153 (584)
191 KOG1546|consensus 39.2 1.7E+02 0.0038 25.9 7.5 95 32-127 50-146 (362)
192 KOG1995|consensus 39.1 14 0.00031 32.6 0.9 24 173-196 131-154 (351)
193 KOG0116|consensus 38.2 54 0.0012 30.0 4.5 15 158-172 289-303 (419)
194 PF03439 Spt5-NGN: Early trans 37.5 74 0.0016 21.9 4.3 34 83-116 33-68 (84)
195 PF07292 NID: Nmi/IFP 35 domai 37.1 26 0.00056 24.7 1.8 27 42-68 48-74 (88)
196 PF03468 XS: XS domain; Inter 36.8 61 0.0013 24.0 3.9 44 58-113 29-77 (116)
197 KOG0415|consensus 34.4 52 0.0011 29.4 3.6 22 173-194 296-317 (479)
198 PF08952 DUF1866: Domain of un 33.4 58 0.0013 25.2 3.4 24 173-196 84-107 (146)
199 KOG2295|consensus 31.9 7.1 0.00015 36.6 -2.1 63 47-120 232-301 (648)
200 KOG0156|consensus 31.9 1E+02 0.0022 28.8 5.4 59 50-122 36-97 (489)
201 PTZ00481 Membrane attack compl 31.8 37 0.00079 31.2 2.3 69 51-119 210-283 (524)
202 PF08544 GHMP_kinases_C: GHMP 29.8 1.7E+02 0.0036 19.3 5.9 29 84-112 48-79 (85)
203 PF15407 Spo7_2_N: Sporulation 29.3 24 0.00052 23.5 0.6 29 42-70 23-51 (67)
204 PF15513 DUF4651: Domain of un 28.4 46 0.001 21.8 1.8 13 61-73 9-21 (62)
205 PF11411 DNA_ligase_IV: DNA li 27.9 38 0.00083 19.6 1.2 15 57-71 20-34 (36)
206 PF14893 PNMA: PNMA 27.4 54 0.0012 29.0 2.6 27 44-70 16-42 (331)
207 COG5175 MOT2 Transcriptional r 27.2 62 0.0013 28.7 2.8 22 173-194 180-201 (480)
208 KOG1996|consensus 24.8 87 0.0019 27.3 3.3 23 173-195 344-366 (378)
209 TIGR03636 L23_arch archaeal ri 21.3 2.5E+02 0.0055 19.1 4.5 53 48-109 15-70 (77)
210 PTZ00380 microtubule-associate 21.0 1.8E+02 0.004 21.7 4.0 13 93-105 97-109 (121)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.2e-23 Score=193.85 Aligned_cols=162 Identities=52% Similarity=0.765 Sum_probs=126.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhcccc-CCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCC
Q psy2204 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA-AGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI 115 (231)
Q Consensus 37 ~~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~-~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~ 115 (231)
.+.+...+..|+|||||||+++|+++|+++|+.++........ ++..|.++.+.+++|||||+|.+.++|..||+|||.
T Consensus 166 ~~~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 166 PYQQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred ccCccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 3567788899999999999999999999999998755443221 244788899999999999999999999999999999
Q ss_pred eecCceEEEeCCCCCCCCCCCCCCCcccCCC--------CcccCcCCCCCCcEEEcCCCCCCCHH---------------
Q psy2204 116 NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA--------GVISTVVPDSPHKIFIGGLPNYLNED--------------- 172 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ifV~nLp~~~tee--------------- 172 (231)
.|.|+.|+|.++..+.+.+............ ........+..++|||+|||+.+|++
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 9999999999888776433221111000000 00112234566899999999999998
Q ss_pred --------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 --------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 --------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
.||..|||+.|+|+.|+|++|..+..
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~ 377 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN 377 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCC
Confidence 89999999999999999999976544
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.88 E-value=2.3e-22 Score=176.59 Aligned_cols=125 Identities=23% Similarity=0.438 Sum_probs=104.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.....++|||+|||+++|+++|+++|+.|| .|+++++ .++||||||+|.++++|.+|| +||+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G-----------~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG 171 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIG-----------PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG 171 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC
Confidence 344678999999999999999999999999 5555554 445799999999999999999 9999
Q ss_pred CeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH----------------------
Q psy2204 115 INFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------------------- 172 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee---------------------- 172 (231)
..+.+++|+|.++++... ....++|||+|||.++|++
T Consensus 172 ~~l~gr~i~V~~a~p~~~---------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~ 230 (346)
T TIGR01659 172 ITVRNKRLKVSYARPGGE---------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL 230 (346)
T ss_pred CccCCceeeeeccccccc---------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC
Confidence 999999999998753211 0123689999999999998
Q ss_pred -------------------HHHHHhCCCeeCC--eEEEEEEeecCcc
Q psy2204 173 -------------------QAIAGLNGMQLGD--KKLIVQRASVGAK 198 (231)
Q Consensus 173 -------------------~Ai~~lnG~~i~g--r~l~V~~a~~~~~ 198 (231)
+||+.||++.+.+ +.|+|++|....+
T Consensus 231 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 231 TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 9999999999876 7999999986544
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=7.5e-22 Score=182.60 Aligned_cols=133 Identities=25% Similarity=0.452 Sum_probs=107.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
....++||||||++++++++|+++|++|| .|.++++ .++||||||+|.+.++|.+|| .|||.
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG-----------~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~ 172 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFG-----------PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ 172 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccC-----------CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCe
Confidence 34567999999999999999999999999 5555554 456899999999999999999 99999
Q ss_pred eecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-----------------------
Q psy2204 116 NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED----------------------- 172 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee----------------------- 172 (231)
.+.||.|+|.++........... .. .......++|||+|||.+++++
T Consensus 173 ~i~GR~IkV~rp~~~p~a~~~~~---------~~-~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t 242 (612)
T TIGR01645 173 MLGGRNIKVGRPSNMPQAQPIID---------MV-QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG 242 (612)
T ss_pred EEecceeeecccccccccccccc---------cc-cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC
Confidence 99999999997654321110000 00 0011234789999999999998
Q ss_pred ------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+||..|||++|+|+.|+|.++...
T Consensus 243 gksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 243 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999999999999854
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=7e-21 Score=167.74 Aligned_cols=121 Identities=17% Similarity=0.411 Sum_probs=102.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
+..+|||+|||+++|+++|+++|+.|| +|.++++. +++|||||+|.+.++|.+|| .|||..+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G-----------~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l 70 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIG-----------EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL 70 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccC-----------CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE
Confidence 457999999999999999999999999 66666664 35699999999999999999 9999999
Q ss_pred cCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------
Q psy2204 118 KGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------- 172 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------- 172 (231)
.|+.|+|.+.++.... ....+|||+|||..++++
T Consensus 71 ~g~~i~v~~a~~~~~~---------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~ 129 (352)
T TIGR01661 71 QNKTIKVSYARPSSDS---------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGL 129 (352)
T ss_pred CCeeEEEEeecccccc---------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCC
Confidence 9999999977543211 123589999999999997
Q ss_pred ----------------HHHHHhCCCeeCC--eEEEEEEeecCc
Q psy2204 173 ----------------QAIAGLNGMQLGD--KKLIVQRASVGA 197 (231)
Q Consensus 173 ----------------~Ai~~lnG~~i~g--r~l~V~~a~~~~ 197 (231)
+|++.|||..+.| +.|+|+++....
T Consensus 130 ~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 130 SKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 8999999999987 778999987554
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.85 E-value=1.8e-20 Score=170.81 Aligned_cols=134 Identities=20% Similarity=0.336 Sum_probs=106.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHHHhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAMAFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al~lng 114 (231)
..++..++|||+|||+++++++|+++|++|| .|.++++. +++|||||+|.+.++|.+||.|+|
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G-----------~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g 152 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVG-----------KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTG 152 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 3456789999999999999999999999999 56666554 458999999999999999999999
Q ss_pred CeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH----------------------
Q psy2204 115 INFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------------------- 172 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee---------------------- 172 (231)
..|.|++|.|............... . . .......++|||+|||+.+|++
T Consensus 153 ~~~~g~~i~v~~~~~~~~~~~~~~~-------~-~-~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~ 223 (457)
T TIGR01622 153 QMLLGRPIIVQSSQAEKNRAAKAAT-------H-Q-PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE 223 (457)
T ss_pred CEECCeeeEEeecchhhhhhhhccc-------c-c-CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 9999999999865432211110000 0 0 0001225899999999999998
Q ss_pred -------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 173 -------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 173 -------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.|+..|||..|.|+.|+|.++.
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 8999999999999999999976
No 6
>KOG0148|consensus
Probab=99.84 E-value=5e-20 Score=151.69 Aligned_cols=141 Identities=13% Similarity=0.279 Sum_probs=115.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
-.-+|||.|..+++.++|++.|.+||.|+... .|+|..+.++|||+||.|.+.++|++|| .|||..|.+|.|+-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~ak-----virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAK-----VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccce-----EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 45799999999999999999999999888764 6788899999999999999999999999 99999999999999
Q ss_pred eCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------------------
Q psy2204 125 RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------------------- 172 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------------------- 172 (231)
.|+..+....+.. ......+-+....+.++||||||+..+||+
T Consensus 137 NWATRKp~e~n~~-----~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkE 211 (321)
T KOG0148|consen 137 NWATRKPSEMNGK-----PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKE 211 (321)
T ss_pred cccccCccccCCC-----CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchh
Confidence 9887543111110 011122222233456899999999999998
Q ss_pred ---HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ---QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ---~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.||..|||.+|+|..++|.|-+.+
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999999999999999997644
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=7.9e-19 Score=154.69 Aligned_cols=73 Identities=23% Similarity=0.509 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
..++|||+|||+++++++|+++|+.|| .|..+++ ..++|||||+|.+.++|.+|| .|||..+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G-----------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~ 156 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFG-----------QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP 156 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccC-----------CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc
Confidence 456899999999999999999999999 4544444 345799999999999999999 9999999
Q ss_pred cC--ceEEEeCCC
Q psy2204 118 KG--QSLKIRRPH 128 (231)
Q Consensus 118 ~g--r~i~V~~~~ 128 (231)
.| ++|.|.++.
T Consensus 157 ~g~~~~i~v~~a~ 169 (352)
T TIGR01661 157 SGCTEPITVKFAN 169 (352)
T ss_pred CCCceeEEEEECC
Confidence 87 567777654
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.81 E-value=1.7e-18 Score=159.01 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=108.7
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 41 TITRQARRLYVGNIPF-GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~-~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
.....+++|||+||++ .+|+++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|| .|||..|
T Consensus 270 ~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG-----------~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l 338 (481)
T TIGR01649 270 AGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG-----------NVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKL 338 (481)
T ss_pred CCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3445778999999998 699999999999999 8888888766 699999999999999999 9999999
Q ss_pred cCceEEEeCCCCCCCCCCC----CCC----------CcccCCCC--cccCcCCCCCCcEEEcCCCCCCCHH---------
Q psy2204 118 KGQSLKIRRPHDYQPTPGV----TDN----------AAVAVPAG--VISTVVPDSPHKIFIGGLPNYLNED--------- 172 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~~----~~~----------~~~~~~~~--~~~~~~~~~~~~ifV~nLp~~~tee--------- 172 (231)
.|++|+|.+++........ ... ...+.... ..........++|||+|||.++|++
T Consensus 339 ~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~ 418 (481)
T TIGR01649 339 FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAEN 418 (481)
T ss_pred CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhc
Confidence 9999999976543211000 000 00000000 0000111234689999999999998
Q ss_pred --------------------------------HHHHHhCCCeeCCeE------EEEEEeecC
Q psy2204 173 --------------------------------QAIAGLNGMQLGDKK------LIVQRASVG 196 (231)
Q Consensus 173 --------------------------------~Ai~~lnG~~i~gr~------l~V~~a~~~ 196 (231)
+|+..|||+.|.++. |+|.+++++
T Consensus 419 G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 419 GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 899999999999885 999998753
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.80 E-value=9.2e-19 Score=160.71 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=105.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-H--hCCCeecCce
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-A--FDGINFKGQS 121 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~--lng~~l~gr~ 121 (231)
++|+|||+|||+++++++|+++|+.|| .|.++.+.++|+||||+|++.++|.+|+ . +++..+.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG-----------~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~ 69 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFG-----------PVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQP 69 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcC-----------CeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeE
Confidence 478999999999999999999999999 8999999999999999999999999999 4 5889999999
Q ss_pred EEEeCCCCCC-CCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH----------------------------
Q psy2204 122 LKIRRPHDYQ-PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------------------------- 172 (231)
Q Consensus 122 i~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee---------------------------- 172 (231)
|+|.++.... ...... . ..........+|||+||++.+|++
T Consensus 70 l~v~~s~~~~~~~~~~~---------~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afV 139 (481)
T TIGR01649 70 AFFNYSTSQEIKRDGNS---------D-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALV 139 (481)
T ss_pred EEEEecCCcccccCCCC---------c-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEE
Confidence 9999876432 111100 0 000001122479999999999999
Q ss_pred ---------HHHHHhCCCeeCC--eEEEEEEeecC
Q psy2204 173 ---------QAIAGLNGMQLGD--KKLIVQRASVG 196 (231)
Q Consensus 173 ---------~Ai~~lnG~~i~g--r~l~V~~a~~~ 196 (231)
+|++.|||..|.| +.|+|.|++..
T Consensus 140 ef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 140 EFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 9999999999965 58999998753
No 10
>KOG0117|consensus
Probab=99.80 E-value=1.3e-18 Score=151.75 Aligned_cols=71 Identities=24% Similarity=0.538 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.....||||.||.++.|++|..+|++.| +|.+++++++ ||||||+|.+.++|.+|| .||+.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG-----------~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIG-----------KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE 149 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcc-----------ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc
Confidence 4567999999999999999999999999 7777777665 899999999999999999 999999
Q ss_pred ec-CceEEEe
Q psy2204 117 FK-GQSLKIR 125 (231)
Q Consensus 117 l~-gr~i~V~ 125 (231)
|. |+.|.|.
T Consensus 150 ir~GK~igvc 159 (506)
T KOG0117|consen 150 IRPGKLLGVC 159 (506)
T ss_pred ccCCCEeEEE
Confidence 95 8888876
No 11
>KOG0109|consensus
Probab=99.80 E-value=2.8e-19 Score=148.63 Aligned_cols=115 Identities=24% Similarity=0.502 Sum_probs=103.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEe
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 125 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~ 125 (231)
.+|||||||.++++.+|+.+|++|| +|+.+++. |+||||..++...++.|| .|+|..|+|..|+|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~yg-----------kVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYG-----------KVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhC-----------ceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEE
Confidence 4799999999999999999999999 78888888 689999999999999999 899999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH---------------------------------
Q psy2204 126 RPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED--------------------------------- 172 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee--------------------------------- 172 (231)
.++++. ....||+|+||.+.++.+
T Consensus 70 aSksKs-----------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~ 126 (346)
T KOG0109|consen 70 ASKSKS-----------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAV 126 (346)
T ss_pred eccccC-----------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchH
Confidence 877542 124789999999988776
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
+||.+|||++|.|++++|+.++.+.
T Consensus 127 ~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred HHHhcccccccccceeeeeeecccc
Confidence 9999999999999999999987553
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.79 E-value=1.8e-18 Score=161.61 Aligned_cols=119 Identities=24% Similarity=0.417 Sum_probs=100.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
+|||||||+++||++|+++|++|| .|.+++++ +++|||||+|.+.++|.+|| .+|+..+.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G-----------~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk 70 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFG-----------PVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK 70 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 799999999999999999999999 66666664 44689999999999999999 9999999999
Q ss_pred eEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH----------------------------
Q psy2204 121 SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------------------------- 172 (231)
Q Consensus 121 ~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee---------------------------- 172 (231)
+|+|.+....... ......+|||+|||.+++++
T Consensus 71 ~i~i~~s~~~~~~-------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~ 131 (562)
T TIGR01628 71 PIRIMWSQRDPSL-------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGY 131 (562)
T ss_pred eEEeecccccccc-------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccE
Confidence 9999986421100 01123679999999999998
Q ss_pred ------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|++.|||..+.|+.|.|.+....
T Consensus 132 afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 132 GFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred EEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 899999999999999999876543
No 13
>KOG0131|consensus
Probab=99.78 E-value=8.1e-19 Score=137.04 Aligned_cols=122 Identities=28% Similarity=0.479 Sum_probs=105.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
....+||||||+..++++.|.++|-+.| +|+++.+.++ +||||++|.++|+|+.|+ -||...
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqag-----------pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk 75 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAG-----------PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK 75 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcC-----------ceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH
Confidence 4567999999999999999999999999 8888888765 699999999999999999 999999
Q ss_pred ecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH------------------------
Q psy2204 117 FKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------ 172 (231)
Q Consensus 117 l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------ 172 (231)
|.||+|+|..+...... .+...+|||+||.+++++.
T Consensus 76 LYgrpIrv~kas~~~~n--------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t 135 (203)
T KOG0131|consen 76 LYGRPIRVNKASAHQKN--------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT 135 (203)
T ss_pred hcCceeEEEeccccccc--------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccC
Confidence 99999999977521111 2233789999999988887
Q ss_pred ------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.|+..|||..+..|+|+|..+...
T Consensus 136 g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 136 GNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred CCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 899999999999999999988644
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.76 E-value=1.4e-18 Score=162.35 Aligned_cols=139 Identities=19% Similarity=0.356 Sum_probs=106.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-----cCCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-----~~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
...++|||+||++++|+++|+++|+.|| .|.++.+ .+.+|||||+|.+.++|.+|+ .+||..+
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG-----------~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFG-----------EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcC-----------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 3456899999999999999999999999 4555544 345799999999999999999 9999999
Q ss_pred c----CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH---------------------
Q psy2204 118 K----GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED--------------------- 172 (231)
Q Consensus 118 ~----gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee--------------------- 172 (231)
. |+.|.|.+.............. ...............+|||+||+.++|++
T Consensus 245 ~~~~~g~~l~v~~a~~k~er~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~ 321 (562)
T TIGR01628 245 GLAKEGKKLYVGRAQKRAEREAELRRK---FEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE 321 (562)
T ss_pred cccccceeeEeecccChhhhHHHHHhh---HHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC
Confidence 9 9999998776443221100000 00000011112234689999999999998
Q ss_pred -------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 -------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 -------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|+.+|||+.++|+.|+|.+|...
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 899999999999999999999754
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.76 E-value=1.4e-17 Score=154.00 Aligned_cols=115 Identities=23% Similarity=0.458 Sum_probs=94.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-----cCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-----~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
...+|||+|||++++|++|+++|++|| .|.++++ .++||||||+|.+.++|.+|| .||+..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G-----------~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAG-----------PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhC-----------CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 457999999999999999999999999 5555555 466899999999999999999 99999885
Q ss_pred -CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------
Q psy2204 119 -GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------- 172 (231)
Q Consensus 119 -gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------- 172 (231)
|+.|.|..+. ..++|||+|||.+++++
T Consensus 126 ~Gr~l~V~~S~---------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~k 178 (578)
T TIGR01648 126 PGRLLGVCISV---------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADK 178 (578)
T ss_pred CCccccccccc---------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccccc
Confidence 7777665432 13679999999888875
Q ss_pred ------------------HHHHHhCC--CeeCCeEEEEEEeecCc
Q psy2204 173 ------------------QAIAGLNG--MQLGDKKLIVQRASVGA 197 (231)
Q Consensus 173 ------------------~Ai~~lnG--~~i~gr~l~V~~a~~~~ 197 (231)
.|+..|+. ..+.|+.|+|+|+.+..
T Consensus 179 gKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 179 KKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 56666653 46789999999998654
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.73 E-value=5.8e-17 Score=149.54 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+...++++|||||+|.+.++|..|| .|||..|.|+.
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~-----~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN-----LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-----EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34568999999999999999999999999443331 1222233456899999999999999999 99999999999
Q ss_pred EEEeCCCC
Q psy2204 122 LKIRRPHD 129 (231)
Q Consensus 122 i~V~~~~~ 129 (231)
|.|.++..
T Consensus 367 l~v~~a~~ 374 (509)
T TIGR01642 367 LHVQRACV 374 (509)
T ss_pred EEEEECcc
Confidence 99997753
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=5.1e-17 Score=150.26 Aligned_cols=130 Identities=22% Similarity=0.315 Sum_probs=101.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeE-------ecCCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQ-------INLDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~-------~~~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
+...++|||+|||+++|+++|+++|++++.. ++++. ..+++|||||+|.+.++|.+|+ .|+.
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~eg----------vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEG----------VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCC----------ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 3456899999999999999999999998621 22221 2356899999999999999999 7753
Q ss_pred --CeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------
Q psy2204 115 --INFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------- 172 (231)
Q Consensus 115 --~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------- 172 (231)
..++|+.|.|.++.+..... .......++|||+||+.++|++
T Consensus 205 gki~l~Gr~I~VdwA~p~~~~d----------------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEEEVD----------------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred cceEecCceEEEEeeccccccc----------------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 46889999999876432110 0011234789999999999998
Q ss_pred ---------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 ---------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 ---------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
+|++.|||.+|.|+.|+|+||.+..+
T Consensus 269 rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 269 RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 89999999999999999999986533
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=3.9e-17 Score=126.75 Aligned_cols=87 Identities=15% Similarity=0.428 Sum_probs=69.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.+....+++|||+||++++|+++|+++|++||.|..+. .+.+....++||||||+|.+.++|++|| .||+..+.
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~-----i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK-----VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE-----EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34455678999999999999999999999999433321 1222223456899999999999999999 89999999
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
|+.|+|.+++...
T Consensus 103 Gr~l~V~~a~~~~ 115 (144)
T PLN03134 103 GRHIRVNPANDRP 115 (144)
T ss_pred CEEEEEEeCCcCC
Confidence 9999999876543
No 19
>KOG0120|consensus
Probab=99.71 E-value=4.9e-17 Score=146.37 Aligned_cols=220 Identities=57% Similarity=0.857 Sum_probs=176.3
Q ss_pred hhhccccCCCCCCcccCCccchhHhhhhcCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccC-CCCe
Q psy2204 6 EVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAA-GNPV 84 (231)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~-~~~i 84 (231)
+++++.+.||+|+..--+.... .-+..+.+..++.+..+.+.+||+++++.++++....+|..--....+.+-+ |..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~ 214 (500)
T KOG0120|consen 136 LYKNFNATGQVPGDLSNPKKSL-KLPQLPTPPMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSF 214 (500)
T ss_pred hhhhccccCCCCCCcccccccc-ccccCCCCccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCce
Confidence 5677888888877744222111 1334555678889999999999999999999999999999876666665554 5789
Q ss_pred eeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEEEeCCCCCCCCCCCCCCCcc--cCCCCcccCcCCCCCCcEEE
Q psy2204 85 LACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAV--AVPAGVISTVVPDSPHKIFI 162 (231)
Q Consensus 85 ~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~V~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ifV 162 (231)
+.+.+...++++|++|.+.+++..|+.+++..+.|+.+++..+..+...+.+...... ..........+.+.+++|||
T Consensus 215 ~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v 294 (500)
T KOG0120|consen 215 VSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFV 294 (500)
T ss_pred eeeeecccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhh
Confidence 9999999999999999999999999999999999999999999998887766554322 22223455667788899999
Q ss_pred cCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeecCccccc
Q psy2204 163 GGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASVGAKNAS 201 (231)
Q Consensus 163 ~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~~~~ 201 (231)
++||..+++. .||..|||+.++++.|.|++|..+.+...
T Consensus 295 ~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~ 374 (500)
T KOG0120|consen 295 GGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNAN 374 (500)
T ss_pred ccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhcc
Confidence 9999999998 89999999999999999999998877766
Q ss_pred CCCCccccccCCcccC--CCCCCCccc
Q psy2204 202 GQQAPVQIQVPGLTQV--GQAGPATEC 226 (231)
Q Consensus 202 ~~~~~~~~q~~~~~~~--~~~~~~~~~ 226 (231)
....-.+.+++++... .+.|+||.+
T Consensus 375 ~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 375 VNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ccCCccccccccchhhhcccCCCcchh
Confidence 4444333478888776 888888875
No 20
>KOG0145|consensus
Probab=99.71 E-value=1.4e-16 Score=130.89 Aligned_cols=123 Identities=20% Similarity=0.461 Sum_probs=103.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCC------cEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK------NFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k------g~aFV~F~~~~~a~~Al-~lng 114 (231)
..+....|.|.-||.++|++||+.+|...| +|+++++.++| ||+||.|-+++||++|+ .|||
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiG-----------eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNG 105 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIG-----------EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNG 105 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhccc-----------ceeeeeeeeccccccccccceeeecChHHHHHHHhhhcc
Confidence 344455699999999999999999999999 66666666654 99999999999999999 9999
Q ss_pred CeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH----------------------
Q psy2204 115 INFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------------------- 172 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee---------------------- 172 (231)
..|..+.|+|.++++.... .. ...|||.+||..+|..
T Consensus 106 LrLQ~KTIKVSyARPSs~~--------------------Ik-~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 106 LRLQNKTIKVSYARPSSDS--------------------IK-DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred eeeccceEEEEeccCChhh--------------------hc-ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 9999999999988753311 11 1469999999999986
Q ss_pred -------------------HHHHHhCCCeeCC--eEEEEEEeecC
Q psy2204 173 -------------------QAIAGLNGMQLGD--KKLIVQRASVG 196 (231)
Q Consensus 173 -------------------~Ai~~lnG~~i~g--r~l~V~~a~~~ 196 (231)
+||..|||..-.| ..|.|+||+..
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 9999999998776 78999999855
No 21
>KOG0144|consensus
Probab=99.69 E-value=1.2e-16 Score=139.07 Aligned_cols=134 Identities=22% Similarity=0.366 Sum_probs=105.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC-
Q psy2204 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGI- 115 (231)
Q Consensus 38 ~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~- 115 (231)
..+.++.+.-+||||.||..++|+||+++|++||.|.++. .|+|..+..+||||||.|.+.++|.+|+ .|+..
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ein-----l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEIN-----LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEE-----eecccccCcccceEEEEeccHHHHHHHHHHhhccc
Confidence 3445556778999999999999999999999999777664 4555566666899999999999999999 77655
Q ss_pred eecC--ceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH---------------------
Q psy2204 116 NFKG--QSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED--------------------- 172 (231)
Q Consensus 116 ~l~g--r~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee--------------------- 172 (231)
.|.| .+|.|+++....++ ....+||||+-|+..+||+
T Consensus 101 tlpG~~~pvqvk~Ad~E~er--------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~ 160 (510)
T KOG0144|consen 101 TLPGMHHPVQVKYADGERER--------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP 160 (510)
T ss_pred ccCCCCcceeecccchhhhc--------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc
Confidence 5555 45677766533222 1124799999999999987
Q ss_pred -------------------HHHHHhCCCe-eCC--eEEEEEEeecC
Q psy2204 173 -------------------QAIAGLNGMQ-LGD--KKLIVQRASVG 196 (231)
Q Consensus 173 -------------------~Ai~~lnG~~-i~g--r~l~V~~a~~~ 196 (231)
.||++|||.. +.| ..|.|+||.+.
T Consensus 161 ~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 161 DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 8999999964 565 89999999754
No 22
>KOG0127|consensus
Probab=99.68 E-value=2.3e-16 Score=140.74 Aligned_cols=139 Identities=21% Similarity=0.361 Sum_probs=105.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
.||||++||+.++.++|.++|+.+| +|..+.+. .+|||+||.|.-.+|+.+|+ +.++..|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vG-----------Pik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~G 74 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVG-----------PIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEG 74 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhccc-----------CcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccc
Confidence 6999999999999999999999999 56555443 44899999999999999999 999999999
Q ss_pred ceEEEeCCCCCCCCCCCCCCC--cccCCCCc---ccCcCCCCCCcEEEcCCCCCCCHH----------------------
Q psy2204 120 QSLKIRRPHDYQPTPGVTDNA--AVAVPAGV---ISTVVPDSPHKIFIGGLPNYLNED---------------------- 172 (231)
Q Consensus 120 r~i~V~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~ifV~nLp~~~tee---------------------- 172 (231)
|.|.|..++.+.......... ...-+... ..........+|.|+|||+.+.++
T Consensus 75 r~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d 154 (678)
T KOG0127|consen 75 RILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD 154 (678)
T ss_pred eecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC
Confidence 999999776543332111110 00000000 001112234689999999999988
Q ss_pred ------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.|+..|||.+|.||+|-|.||...
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 999999999999999999999744
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.66 E-value=2.2e-15 Score=137.43 Aligned_cols=72 Identities=28% Similarity=0.604 Sum_probs=65.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.++|||+|||+++|+++|+++|+.|| .|..+.+. +.+|||||+|.+.++|.+|+ .|||..+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G-----------~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~ 254 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFG-----------DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA 254 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC
Confidence 68999999999999999999999999 56666554 55799999999999999999 99999999
Q ss_pred CceEEEeCCC
Q psy2204 119 GQSLKIRRPH 128 (231)
Q Consensus 119 gr~i~V~~~~ 128 (231)
|+.|.|.++.
T Consensus 255 g~~i~v~~a~ 264 (457)
T TIGR01622 255 GRPIKVGYAQ 264 (457)
T ss_pred CEEEEEEEcc
Confidence 9999999854
No 24
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2.9e-15 Score=125.00 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---CcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---KNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
.++|||+||++.+|+++|+++|+.|| .|.++++.++ +|||||+|++.++++.||.|||..|.||.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G-----------~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V 72 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSG-----------DIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSV 72 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceE
Confidence 57999999999999999999999999 7777777554 699999999999999999999999999999
Q ss_pred EEeCCCCCCCC
Q psy2204 123 KIRRPHDYQPT 133 (231)
Q Consensus 123 ~V~~~~~~~~~ 133 (231)
+|.....+...
T Consensus 73 ~Vt~a~~~~~p 83 (260)
T PLN03120 73 TITPAEDYQLP 83 (260)
T ss_pred EEEeccCCCCC
Confidence 99988766543
No 25
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=1.8e-15 Score=102.08 Aligned_cols=64 Identities=34% Similarity=0.687 Sum_probs=57.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 49 lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
|||+|||+++|+++|+++|++|| .+..+++.. .++||||+|.+.++|++|+ .+||..+.|++|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g-----------~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG-----------KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS-----------TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh-----------hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 79999999999999999999999 566655544 3799999999999999999 899999999988
Q ss_pred E
Q psy2204 123 K 123 (231)
Q Consensus 123 ~ 123 (231)
+
T Consensus 70 r 70 (70)
T PF00076_consen 70 R 70 (70)
T ss_dssp E
T ss_pred C
Confidence 5
No 26
>KOG0127|consensus
Probab=99.59 E-value=1.8e-14 Score=128.75 Aligned_cols=74 Identities=23% Similarity=0.454 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
.-+|+|.||||.+.+.+|+.+|+.|| .|+.+.|.+. .|||||.|....+|.+|| .+|+..|.|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G-----------~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~g 185 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFG-----------KVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDG 185 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcc-----------eEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecC
Confidence 45899999999999999999999999 6777777644 499999999999999999 999999999
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
|+|-|.|+-..
T Consensus 186 R~VAVDWAV~K 196 (678)
T KOG0127|consen 186 RPVAVDWAVDK 196 (678)
T ss_pred ceeEEeeeccc
Confidence 99999987644
No 27
>KOG0105|consensus
Probab=99.59 E-value=1.6e-14 Score=113.48 Aligned_cols=119 Identities=23% Similarity=0.390 Sum_probs=88.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---CcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---KNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.+.+++|||||||.++.+.+|.++|.+|| .|+.+.+... ..||||+|++..+|+.|| .-+|..++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg-----------~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYG-----------RIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhc-----------ceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 46788999999999999999999999999 7888777543 479999999999999999 99999999
Q ss_pred CceEEEeCCCCCCCCCCCCCCCcccC-----CCCcccCcCCCCCCcEEEcCCCCCCCHH
Q psy2204 119 GQSLKIRRPHDYQPTPGVTDNAAVAV-----PAGVISTVVPDSPHKIFIGGLPNYLNED 172 (231)
Q Consensus 119 gr~i~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ifV~nLp~~~tee 172 (231)
|..|+|.+++.............-.- .-+........+..+|.|.+||.+-+|.
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQ 130 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQ 130 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchH
Confidence 99999999886542211000000000 0001111123345689999999999998
No 28
>KOG0125|consensus
Probab=99.57 E-value=7.2e-15 Score=124.21 Aligned_cols=85 Identities=21% Similarity=0.402 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC----CCcEEEEEecCHHHHHHHH-H
Q psy2204 37 VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL----DKNFAFLEFRSIDETTQAM-A 111 (231)
Q Consensus 37 ~~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~----~kg~aFV~F~~~~~a~~Al-~ 111 (231)
...++.....++|+|+||||...|.||+.+|++|| +|+||.|.- +||||||+|++.+||++|- +
T Consensus 87 st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG-----------~VldVEIIfNERGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 87 STNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFG-----------KVLDVEIIFNERGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCcCCCCCCCceeEeecCCccccCccHHHHHHhhC-----------ceeeEEEEeccCCCCccceEEecChhhHHHHHHH
Confidence 33345555669999999999999999999999999 777777753 3899999999999999999 9
Q ss_pred hCCCeecCceEEEeCCCCCCC
Q psy2204 112 FDGINFKGQSLKIRRPHDYQP 132 (231)
Q Consensus 112 lng~~l~gr~i~V~~~~~~~~ 132 (231)
|||+.+.||+|+|+.+..+..
T Consensus 156 LHgt~VEGRkIEVn~ATarV~ 176 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATARVH 176 (376)
T ss_pred hhcceeeceEEEEeccchhhc
Confidence 999999999999998776543
No 29
>KOG0121|consensus
Probab=99.56 E-value=7.5e-15 Score=108.78 Aligned_cols=79 Identities=25% Similarity=0.495 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng 114 (231)
+.+.+.+||||||++.++|++|.++|+++| .|..+-++.+ .|||||+|.+.++|..|+ -++|
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG-----------~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisg 100 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCG-----------DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISG 100 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhcc-----------chheeEeccccCCcCccceEEEEEecchhHHHHHHHhcc
Confidence 456788999999999999999999999999 5666655544 499999999999999999 9999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
+.|+.|.|++.+...+.
T Consensus 101 trLddr~ir~D~D~GF~ 117 (153)
T KOG0121|consen 101 TRLDDRPIRIDWDAGFV 117 (153)
T ss_pred Ccccccceeeeccccch
Confidence 99999999999776554
No 30
>KOG0124|consensus
Probab=99.56 E-value=1.7e-15 Score=129.73 Aligned_cols=136 Identities=23% Similarity=0.388 Sum_probs=106.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
..+||||.|.+++.|+-||..|..||-|.++. --.+--++++||||||+|+-.|.|.-|+ .|||..+.||.|+|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSIn-----MSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKV 187 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSIN-----MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 187 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceee-----cccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccc
Confidence 36899999999999999999999999444432 1222334678999999999999999999 99999999999999
Q ss_pred eCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------------------
Q psy2204 125 RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------------------- 172 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------------------- 172 (231)
.++.+.......- ..-.......++|||..+..+++++
T Consensus 188 grPsNmpQAQpiI----------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfi 257 (544)
T KOG0124|consen 188 GRPSNMPQAQPII----------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFI 257 (544)
T ss_pred cCCCCCcccchHH----------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeE
Confidence 9876432111000 0001112345799999999999998
Q ss_pred ---------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ---------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ---------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+||..||=+.++|..|||-++...
T Consensus 258 Ey~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 258 EYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred EeccccchHHHhhhcchhhcccceEecccccCC
Confidence 999999999999999999887543
No 31
>KOG0110|consensus
Probab=99.55 E-value=1.6e-14 Score=132.45 Aligned_cols=125 Identities=22% Similarity=0.422 Sum_probs=100.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---------CcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---------KNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 49 lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---------kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
|||.||++++|.++|.+.|...| .|+++.|.+. .|||||+|.+.++|..|+ .|+|+.|+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G-----------~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld 586 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQG-----------TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD 586 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcC-----------eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec
Confidence 99999999999999999999999 5555555433 399999999999999999 99999999
Q ss_pred CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------------
Q psy2204 119 GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------------- 172 (231)
Q Consensus 119 gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------------- 172 (231)
|+.|.|+.+...... ..... .......++|.|+|||+..+..
T Consensus 587 GH~l~lk~S~~k~~~-~~gK~-----------~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~ 654 (725)
T KOG0110|consen 587 GHKLELKISENKPAS-TVGKK-----------KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAH 654 (725)
T ss_pred CceEEEEeccCcccc-ccccc-----------cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhh
Confidence 999999987722111 00000 0001124799999999998877
Q ss_pred ---------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ---------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ---------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.|+..|.++.+.||+|.++||...
T Consensus 655 rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 655 RGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 889999999999999999999743
No 32
>KOG0145|consensus
Probab=99.54 E-value=1.5e-13 Score=113.12 Aligned_cols=149 Identities=22% Similarity=0.303 Sum_probs=107.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
.......|||++||..+|..||.++|+.||.|.... .+++-.++.+||.+||.|...++|+.|| .|||..-.|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSR-----iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSR-----ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhh-----hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 334556899999999999999999999999776542 3445555778999999999999999999 9999988774
Q ss_pred --eEEEeCCCCCCCCCCC-----------------CCCCccc---------------CCC----------CcccCcCCCC
Q psy2204 121 --SLKIRRPHDYQPTPGV-----------------TDNAAVA---------------VPA----------GVISTVVPDS 156 (231)
Q Consensus 121 --~i~V~~~~~~~~~~~~-----------------~~~~~~~---------------~~~----------~~~~~~~~~~ 156 (231)
+|.|+++..-...... -.....+ ++. +..-......
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 6888876532211110 0000000 000 0001112233
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
..+|||-||..+.+|. .||..|||+.+++|.|.|+|.+.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 4699999999998877 89999999999999999999864
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.4e-14 Score=115.72 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---CcEEEEEecCHHHHHHHHHhCCCeecCc
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---KNFAFLEFRSIDETTQAMAFDGINFKGQ 120 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---kg~aFV~F~~~~~a~~Al~lng~~l~gr 120 (231)
....+|||+||++.+|+++|++||+.|| .|.++++.++ ++||||+|++.++++.|+.|||..|.++
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G-----------~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~ 71 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCG-----------AIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQ 71 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcC-----------CeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCc
Confidence 4567999999999999999999999999 7778777665 5899999999999999999999999999
Q ss_pred eEEEeCCCCCCC
Q psy2204 121 SLKIRRPHDYQP 132 (231)
Q Consensus 121 ~i~V~~~~~~~~ 132 (231)
+|.|.....+..
T Consensus 72 ~I~It~~~~y~~ 83 (243)
T PLN03121 72 RVCITRWGQYED 83 (243)
T ss_pred eEEEEeCccccc
Confidence 999997766554
No 34
>KOG0107|consensus
Probab=99.51 E-value=4.1e-14 Score=110.19 Aligned_cols=73 Identities=23% Similarity=0.454 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
..+||||||+.++++.||...|..|| .+.+|.+.+. .|||||||++..||..|+ .|||+.|.|..|+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG-----------~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~r 78 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYG-----------PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIR 78 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcC-----------cceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEE
Confidence 57899999999999999999999999 7888877654 699999999999999999 9999999999999
Q ss_pred EeCCCC
Q psy2204 124 IRRPHD 129 (231)
Q Consensus 124 V~~~~~ 129 (231)
|...+.
T Consensus 79 VE~S~G 84 (195)
T KOG0107|consen 79 VELSTG 84 (195)
T ss_pred EEeecC
Confidence 986653
No 35
>KOG0148|consensus
Probab=99.50 E-value=7.3e-14 Score=115.50 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
.++.+..+|||||++..+||++|++.|+.|| .|.+|++-+++||+||.|++.|+|.+|| .+|++++.|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG-----------~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G 227 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFG-----------PIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGG 227 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCC-----------cceEEEEecccceEEEEecchhhHHHHHHHhcCceeCc
Confidence 4566788999999999999999999999999 9999999999999999999999999999 999999999
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
..+++.|.++.
T Consensus 228 ~~VkCsWGKe~ 238 (321)
T KOG0148|consen 228 QLVRCSWGKEG 238 (321)
T ss_pred eEEEEeccccC
Confidence 99999988753
No 36
>KOG0149|consensus
Probab=99.49 E-value=3.2e-14 Score=115.52 Aligned_cols=76 Identities=14% Similarity=0.303 Sum_probs=67.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEEEe
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~V~ 125 (231)
-.+||||+|+|.++.+.|+++|++||.|.+.+ .|.|..++|+||||||+|.+.++|.+|++--.-.++||+..++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eav-----vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAV-----VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEE-----EEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccc
Confidence 36899999999999999999999999888776 5677788899999999999999999999666678999998887
Q ss_pred C
Q psy2204 126 R 126 (231)
Q Consensus 126 ~ 126 (231)
.
T Consensus 87 l 87 (247)
T KOG0149|consen 87 L 87 (247)
T ss_pred h
Confidence 3
No 37
>KOG0117|consensus
Probab=99.49 E-value=4.8e-14 Score=123.46 Aligned_cols=108 Identities=17% Similarity=0.297 Sum_probs=95.0
Q ss_pred cccCCCCCCcccCCccchhHhhhhcCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe
Q psy2204 10 TGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~ 89 (231)
|.....+|.+..++.+.++..||.+....+......-+-|||.||+.++|++.|+++|++|| .|..|+.
T Consensus 223 ~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G-----------~veRVkk 291 (506)
T KOG0117|consen 223 MARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFG-----------KVERVKK 291 (506)
T ss_pred HHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhcc-----------ceEEeec
Confidence 33455589999999999999999998888877666778899999999999999999999999 6777666
Q ss_pred cCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEeCCCCC
Q psy2204 90 NLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDY 130 (231)
Q Consensus 90 ~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~~~~~ 130 (231)
. |.||||+|.+.++|.+|| .+||++|+|..|.|..+++.
T Consensus 292 ~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 292 P--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred c--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 6 459999999999999999 99999999999999877643
No 38
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=9.5e-14 Score=123.05 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=66.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC--CcEEEEEecCH--HHHHHHH-HhCCCe
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD--KNFAFLEFRSI--DETTQAM-AFDGIN 116 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~--kg~aFV~F~~~--~~a~~Al-~lng~~ 116 (231)
......+||||||++++++++|+..|..|| .|.++.+.+. ||||||+|.+. .++.+|| .|||..
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFG-----------sVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMG-----------TVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 344567999999999999999999999999 5666555443 89999999987 7899999 999999
Q ss_pred ecCceEEEeCCC
Q psy2204 117 FKGQSLKIRRPH 128 (231)
Q Consensus 117 l~gr~i~V~~~~ 128 (231)
+.||.|+|..++
T Consensus 75 WKGR~LKVNKAK 86 (759)
T PLN03213 75 WKGGRLRLEKAK 86 (759)
T ss_pred ecCceeEEeecc
Confidence 999999999666
No 39
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=5.6e-14 Score=95.33 Aligned_cols=64 Identities=30% Similarity=0.656 Sum_probs=56.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 49 lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
|||+|||+++++++|+++|+.|| .|..+++.++ +++|||+|.+.++|.+|+ .+++..++|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g-----------~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG-----------PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS-----------BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC-----------CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999 6777777655 699999999999999999 888899999987
Q ss_pred E
Q psy2204 123 K 123 (231)
Q Consensus 123 ~ 123 (231)
+
T Consensus 70 ~ 70 (70)
T PF14259_consen 70 R 70 (70)
T ss_dssp E
T ss_pred C
Confidence 5
No 40
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.46 E-value=1.3e-13 Score=128.22 Aligned_cols=75 Identities=19% Similarity=0.486 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
...++|||+||++++++++|+++|+.|| .|.++++. ++||||||+|.+.++|.+|| .||+..
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG-----------~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e 270 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFG-----------EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD 270 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcC-----------CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe
Confidence 3457999999999999999999999999 55555553 45899999999999999999 999999
Q ss_pred ecCceEEEeCCCC
Q psy2204 117 FKGQSLKIRRPHD 129 (231)
Q Consensus 117 l~gr~i~V~~~~~ 129 (231)
|.|+.|+|.++..
T Consensus 271 lgGr~LrV~kAi~ 283 (612)
T TIGR01645 271 LGGQYLRVGKCVT 283 (612)
T ss_pred eCCeEEEEEecCC
Confidence 9999999997764
No 41
>KOG4205|consensus
Probab=99.45 E-value=1.6e-13 Score=118.16 Aligned_cols=129 Identities=22% Similarity=0.391 Sum_probs=103.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~lng~~l~ 118 (231)
+..+||||+|+|+++++.|+++|.+|| .+.++.+++ .+||+||+|.+.+.+.++|...-+.|+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~G-----------ev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~d 73 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFG-----------EVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLD 73 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccC-----------ceeeEEEeccCCCCCcccccceecCCCcchheeecccccccC
Confidence 778999999999999999999999999 555555544 479999999999999999988888999
Q ss_pred CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------------
Q psy2204 119 GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------------- 172 (231)
Q Consensus 119 gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------------- 172 (231)
||.|.+.++.++........ .....+|||++||.+++++
T Consensus 74 gr~ve~k~av~r~~~~~~~~---------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~ 138 (311)
T KOG4205|consen 74 GRSVEPKRAVSREDQTKVGR---------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP 138 (311)
T ss_pred CccccceeccCccccccccc---------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc
Confidence 99999987765543321111 1134799999999999998
Q ss_pred --------------HHHHHhCCCeeCCeEEEEEEeecCccc
Q psy2204 173 --------------QAIAGLNGMQLGDKKLIVQRASVGAKN 199 (231)
Q Consensus 173 --------------~Ai~~lnG~~i~gr~l~V~~a~~~~~~ 199 (231)
+.+....-+.|.|+.+.|++|.+....
T Consensus 139 rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 139 RGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ccceeeEeccccccceecccceeeecCceeeEeeccchhhc
Confidence 445556678899999999999866443
No 42
>KOG4206|consensus
Probab=99.44 E-value=1.5e-12 Score=105.38 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 44 RQARRLYVGNIPFGVTEDEMME----FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~----~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.+..||||.||+..+..++|+. +|++||++. .|+..+..+-||-|||.|.+.+.|..|+ .|+|..|.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il--------dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy 78 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL--------DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY 78 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeE--------EEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc
Confidence 3445999999999999999988 999999544 3444455666899999999999999999 99999999
Q ss_pred CceEEEeCCCCC
Q psy2204 119 GQSLKIRRPHDY 130 (231)
Q Consensus 119 gr~i~V~~~~~~ 130 (231)
|++++|++++..
T Consensus 79 gK~mriqyA~s~ 90 (221)
T KOG4206|consen 79 GKPMRIQYAKSD 90 (221)
T ss_pred CchhheecccCc
Confidence 999999988643
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=8.8e-13 Score=109.95 Aligned_cols=129 Identities=22% Similarity=0.475 Sum_probs=87.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
.++|||+|||+++|+++|+++|..||.+..+. ...+..+++.+|||||+|.+.+++..|+ .+++..|.|++|.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~-----~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR-----LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE-----eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEe
Confidence 68999999999999999999999999554432 1122234566899999999999999999 99999999999999
Q ss_pred eCCCC-CCCCCCCCC--CCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHHHHHHHhC
Q psy2204 125 RRPHD-YQPTPGVTD--NAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLN 179 (231)
Q Consensus 125 ~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee~Ai~~ln 179 (231)
..... ......... .....................+++++++..++.+.....+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (306)
T COG0724 190 QKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK 247 (306)
T ss_pred eccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc
Confidence 98542 111111100 00000000111122233456889999999998874443333
No 44
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=9.4e-13 Score=87.99 Aligned_cols=67 Identities=36% Similarity=0.723 Sum_probs=60.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCC----cEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK----NFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k----g~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
+|||+|||.++++++|+++|+.|| .+..+.+..++ ++|||+|.+.++|.+|+ .+++..+.|+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g-----------~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG-----------PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC-----------CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 589999999999999999999999 67777666554 99999999999999999 999999999998
Q ss_pred EEe
Q psy2204 123 KIR 125 (231)
Q Consensus 123 ~V~ 125 (231)
.|+
T Consensus 70 ~v~ 72 (72)
T smart00362 70 RVE 72 (72)
T ss_pred eeC
Confidence 874
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.41 E-value=8.8e-13 Score=116.11 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
..++|||+|||+++|+++|+++|++|| .|+.+++. +.|+||||+|.+.++|++|| .||+..+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG-----------~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYG-----------QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcC-----------CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 456899999999999999999999999 55555544 44699999999999999999 9999999
Q ss_pred cC--ceEEEeCCCCC
Q psy2204 118 KG--QSLKIRRPHDY 130 (231)
Q Consensus 118 ~g--r~i~V~~~~~~ 130 (231)
.+ ++|+|.++...
T Consensus 261 ~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 261 EGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCceeEEEEECCcc
Confidence 76 68888877643
No 46
>KOG0123|consensus
Probab=99.41 E-value=1.1e-12 Score=116.34 Aligned_cols=131 Identities=19% Similarity=0.391 Sum_probs=98.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC----CcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~----kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
++.++...|||.||++++|..+|.++|+.|| .|+++++..+ ||| ||+|+++++|++|| .+||.
T Consensus 71 ~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g-----------~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ 138 (369)
T KOG0123|consen 71 WSQRDPSLVFIKNLDESIDNKSLYDTFSEFG-----------NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGM 138 (369)
T ss_pred hhccCCceeeecCCCcccCcHHHHHHHHhhc-----------CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCc
Confidence 4455555699999999999999999999999 6777776543 799 99999999999999 99999
Q ss_pred eecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-----------------------
Q psy2204 116 NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED----------------------- 172 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee----------------------- 172 (231)
.+.|++|.|........+....... ...-..+||.|++.+.+++
T Consensus 139 ll~~kki~vg~~~~~~er~~~~~~~-------------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 139 LLNGKKIYVGLFERKEEREAPLGEY-------------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred ccCCCeeEEeeccchhhhcccccch-------------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 9999999998554333222111110 0111234444554444443
Q ss_pred -----------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 -----------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 -----------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.|+..|||..+.+..+.|..+..+
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 899999999999999999988764
No 47
>KOG0114|consensus
Probab=99.41 E-value=9.6e-13 Score=94.21 Aligned_cols=75 Identities=24% Similarity=0.409 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---CcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---KNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
-.|-|||.|||+++|.++..++|.+|| .|+.++++-. +|-|||.|++..+|++|+ .|+|..+.++
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg-----------~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYG-----------TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhccc-----------ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 357899999999999999999999999 8888888654 799999999999999999 9999999999
Q ss_pred eEEEeCCCCC
Q psy2204 121 SLKIRRPHDY 130 (231)
Q Consensus 121 ~i~V~~~~~~ 130 (231)
.|.|-+....
T Consensus 86 yl~vlyyq~~ 95 (124)
T KOG0114|consen 86 YLVVLYYQPE 95 (124)
T ss_pred eEEEEecCHH
Confidence 9999877643
No 48
>KOG0113|consensus
Probab=99.39 E-value=1.1e-12 Score=109.83 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
...++-+||||+-|+++++|+.|+..|+.||.|..+. .|.+..++++||||||+|+++.++..|. ..+|..|+|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir-----lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR-----LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEE-----EeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 3456779999999999999999999999999777664 4556667788999999999999999999 999999999
Q ss_pred ceEEEeCC
Q psy2204 120 QSLKIRRP 127 (231)
Q Consensus 120 r~i~V~~~ 127 (231)
+.|.|..-
T Consensus 171 rri~VDvE 178 (335)
T KOG0113|consen 171 RRILVDVE 178 (335)
T ss_pred cEEEEEec
Confidence 99998743
No 49
>KOG0123|consensus
Probab=99.38 E-value=2.9e-12 Score=113.62 Aligned_cols=110 Identities=27% Similarity=0.425 Sum_probs=93.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC---CCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~---~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
..|||| +++|+..|+++|+.+|. ++++++++ +-|||||.|.+.++|.+|| +||...++|++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~-----------v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGP-----------VLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCC-----------ceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 369999 99999999999999994 54444444 4699999999999999999 999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH------------------------------
Q psy2204 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------------ 172 (231)
Q Consensus 123 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------------ 172 (231)
+|.|.... +..|||.||+.+++..
T Consensus 68 rim~s~rd--------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~FV~ 121 (369)
T KOG0123|consen 68 RIMWSQRD--------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGYFVQ 121 (369)
T ss_pred EeehhccC--------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceeeEEE
Confidence 99987521 1229999999988877
Q ss_pred --------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 --------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 --------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+||+.|||..+.|++|.|......
T Consensus 122 f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 122 FESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999999999876543
No 50
>KOG0111|consensus
Probab=99.35 E-value=8.2e-13 Score=106.44 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
.+....|+||||+|..+++|.-|...|-.|| .|.++++ .++||||||+|.-.|||..|| .||
T Consensus 5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFG-----------DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn 73 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFG-----------DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN 73 (298)
T ss_pred cccccceeEEeccchHHHHHHHHHhcccccc-----------chhhcccccchhcccccceeEEEeeccchhHHHhhcCc
Confidence 3456789999999999999999999999999 5666655 456999999999999999999 999
Q ss_pred CCeecCceEEEeCCCCCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQPTPG 135 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~~~~~ 135 (231)
+.+|.||.|+|.++++..-..+
T Consensus 74 esEL~GrtirVN~AkP~kikeg 95 (298)
T KOG0111|consen 74 ESELFGRTIRVNLAKPEKIKEG 95 (298)
T ss_pred hhhhcceeEEEeecCCccccCC
Confidence 9999999999998886654443
No 51
>KOG0147|consensus
Probab=99.35 E-value=6.1e-13 Score=119.22 Aligned_cols=145 Identities=17% Similarity=0.278 Sum_probs=107.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
...+++.|++|+-.|....++-+|.+||+.+|+|..+- .|.+-...+.||.|||+|.+.+++..||.|.|+.+.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVr-----iI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg 247 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVR-----IIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLG 247 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeE-----eeccccchhhcceeEEEEecccchhhHhhhcCCcccC
Confidence 45678899999999999999999999999999444332 2222222445899999999999999999999999999
Q ss_pred ceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH---------------------------
Q psy2204 120 QSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED--------------------------- 172 (231)
Q Consensus 120 r~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee--------------------------- 172 (231)
.+|.|+......+... ....+. ........-++|||+||.+.++++
T Consensus 248 ~pv~vq~sEaeknr~a-~~s~a~------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~sk 320 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAA-NASPAL------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSK 320 (549)
T ss_pred ceeEecccHHHHHHHH-hccccc------cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccccccc
Confidence 9999985542222100 000010 000111122449999999999999
Q ss_pred --------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 --------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 --------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|+..|||++|.||.|+|..-+..
T Consensus 321 gfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 321 GFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred CcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 899999999999999999876544
No 52
>KOG0122|consensus
Probab=99.34 E-value=2.4e-12 Score=105.21 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
+++.+|=|.||+.+++|++|+++|..||.+..+. ...+..++..||||||.|.+.++|.+|| .|||.-++.--|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy-----lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVY-----LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeE-----EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 4678899999999999999999999999655543 3445556777999999999999999999 999999999999
Q ss_pred EEeCCCCC
Q psy2204 123 KIRRPHDY 130 (231)
Q Consensus 123 ~V~~~~~~ 130 (231)
+|.|+++.
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99998764
No 53
>KOG4207|consensus
Probab=99.34 E-value=2.5e-12 Score=102.78 Aligned_cols=75 Identities=24% Similarity=0.449 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
.....+|-|-||-+-++.++|+.+|++|| .|-||.|.++ +|||||.|.+..+|+.|+ .|+|.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG-----------~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~ 78 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYG-----------RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA 78 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhC-----------cccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence 34566899999999999999999999999 6777777655 799999999999999999 99999
Q ss_pred eecCceEEEeCCC
Q psy2204 116 NFKGQSLKIRRPH 128 (231)
Q Consensus 116 ~l~gr~i~V~~~~ 128 (231)
+|+|+.|.|+.++
T Consensus 79 ~ldgRelrVq~ar 91 (256)
T KOG4207|consen 79 VLDGRELRVQMAR 91 (256)
T ss_pred eeccceeeehhhh
Confidence 9999999999665
No 54
>KOG0108|consensus
Probab=99.33 E-value=2.4e-12 Score=115.41 Aligned_cols=80 Identities=23% Similarity=0.501 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEe
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 125 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~ 125 (231)
+.+||||+|+++++++|.++|+..|.|.++. .+.|...++.|||||++|.+.+++.+|+ .|||.++.||+|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~-----~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFR-----LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceee-----ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEee
Confidence 8999999999999999999999999666664 4555566777999999999999999999 999999999999999
Q ss_pred CCCCCC
Q psy2204 126 RPHDYQ 131 (231)
Q Consensus 126 ~~~~~~ 131 (231)
++....
T Consensus 94 ~~~~~~ 99 (435)
T KOG0108|consen 94 YASNRK 99 (435)
T ss_pred cccccc
Confidence 876543
No 55
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=2e-11 Score=81.91 Aligned_cols=67 Identities=36% Similarity=0.677 Sum_probs=60.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
+|||+|||..+++++|+++|+.|| .+..+.+..+ +++|||+|.+.++|..|+ .+++..+.|+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g-----------~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~ 69 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFG-----------KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRP 69 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcC-----------CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 589999999999999999999999 6666666544 699999999999999999 99999999999
Q ss_pred EEEe
Q psy2204 122 LKIR 125 (231)
Q Consensus 122 i~V~ 125 (231)
+.|.
T Consensus 70 ~~v~ 73 (74)
T cd00590 70 LRVE 73 (74)
T ss_pred EEEe
Confidence 9886
No 56
>KOG0147|consensus
Probab=99.31 E-value=4e-12 Score=114.04 Aligned_cols=79 Identities=27% Similarity=0.538 Sum_probs=65.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
...+.++||||||.++++++.|+.+|+.||.|..+. ..++..+++.|||+||+|.+.++|++|+ .|||.+|-||
T Consensus 274 ~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~-----l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr 348 (549)
T KOG0147|consen 274 FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQ-----LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR 348 (549)
T ss_pred cccchhhhhhcccccCchHHHHhhhccCcccceeee-----eccccccccccCcceEEEecHHHHHHHHHHhccceecCc
Confidence 344555699999999999999999999999554432 2233346677999999999999999999 9999999999
Q ss_pred eEEEe
Q psy2204 121 SLKIR 125 (231)
Q Consensus 121 ~i~V~ 125 (231)
.|+|.
T Consensus 349 ~ikV~ 353 (549)
T KOG0147|consen 349 LIKVS 353 (549)
T ss_pred eEEEE
Confidence 99987
No 57
>KOG0126|consensus
Probab=99.29 E-value=2e-13 Score=106.96 Aligned_cols=85 Identities=21% Similarity=0.484 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
.-+++.-|||||||+++||.+|..+|++||.+..+. .|++.+++++|||||+-|++..+..-|+ .|||..+.||
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin-----LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN-----LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEE-----EEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 445677899999999999999999999999666554 4566667777999999999999999999 9999999999
Q ss_pred eEEEeCCCCCC
Q psy2204 121 SLKIRRPHDYQ 131 (231)
Q Consensus 121 ~i~V~~~~~~~ 131 (231)
.|+|..-..|.
T Consensus 106 tirVDHv~~Yk 116 (219)
T KOG0126|consen 106 TIRVDHVSNYK 116 (219)
T ss_pred eEEeeeccccc
Confidence 99998655544
No 58
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=3.3e-11 Score=80.04 Aligned_cols=64 Identities=38% Similarity=0.691 Sum_probs=56.1
Q ss_pred EcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 51 VGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 51 VgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
|+|||..+++++|+++|+.|| .|..+.+.++ ++||||+|.+.++|.+|+ .+++..+.|+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g-----------~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 69 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG-----------KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLK 69 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC-----------CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEE
Confidence 689999999999999999999 5655555443 689999999999999999 9999999999988
Q ss_pred Ee
Q psy2204 124 IR 125 (231)
Q Consensus 124 V~ 125 (231)
|+
T Consensus 70 v~ 71 (71)
T smart00360 70 VK 71 (71)
T ss_pred eC
Confidence 74
No 59
>KOG4212|consensus
Probab=99.24 E-value=9.6e-11 Score=102.79 Aligned_cols=75 Identities=16% Similarity=0.432 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-----cCCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-----~~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
.-.|.+||.|||++..+++|+++|..-.. .|..|.+ .+.||||.|||+++|.++||+ .||..++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvG----------ev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVG----------EVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcC----------ceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 34577999999999999999999985431 4555544 566899999999999999999 9999999
Q ss_pred cCceEEEeCCC
Q psy2204 118 KGQSLKIRRPH 128 (231)
Q Consensus 118 ~gr~i~V~~~~ 128 (231)
.||+|.|+...
T Consensus 112 ~GR~l~vKEd~ 122 (608)
T KOG4212|consen 112 NGRELVVKEDH 122 (608)
T ss_pred cCceEEEeccC
Confidence 99999998544
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=3e-11 Score=78.46 Aligned_cols=54 Identities=30% Similarity=0.572 Sum_probs=49.4
Q ss_pred HHHHHHHhhhhhhccccCCCCeeeeEecCCC-cEEEEEecCHHHHHHHH-HhCCCeecCceEEEeCC
Q psy2204 63 MMEFFNQQMHLSGLAQAAGNPVLACQINLDK-NFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRP 127 (231)
Q Consensus 63 L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k-g~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~~ 127 (231)
|+++|++|| .|.++.+.+++ ++|||+|.+.++|.+|+ .|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG-----------~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG-----------EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS------------EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcc-----------cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999 89999888887 99999999999999999 99999999999999863
No 61
>KOG0153|consensus
Probab=99.20 E-value=1.1e-10 Score=99.83 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=75.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH--HhCCC
Q psy2204 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM--AFDGI 115 (231)
Q Consensus 38 ~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al--~lng~ 115 (231)
..+......++||||+|...++|.+|+++|.+|| .|+++.+...++||||+|.+.++|+.|. .+|..
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyG-----------eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~l 288 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYG-----------EIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKL 288 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcC-----------CeeeEEeecccccceeeehhhHHHHHHHHhhccee
Confidence 5566777889999999999999999999999999 8999999999999999999999999998 88888
Q ss_pred eecCceEEEeCCCC
Q psy2204 116 NFKGQSLKIRRPHD 129 (231)
Q Consensus 116 ~l~gr~i~V~~~~~ 129 (231)
.++|++|+|.|.++
T Consensus 289 vI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 289 VINGFRLKIKWGRP 302 (377)
T ss_pred eecceEEEEEeCCC
Confidence 89999999998887
No 62
>KOG0146|consensus
Probab=99.20 E-value=1.9e-11 Score=101.25 Aligned_cols=77 Identities=26% Similarity=0.429 Sum_probs=61.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-----cCCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-----~~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
....+.|+||||-|...-.|+|++.+|..|| .|.++.+ +.+||||||.|.+..+|..|| .|+|
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG-----------~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFG-----------NIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHG 82 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccC-----------CcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcc
Confidence 3334779999999999999999999999999 4555444 445999999999999999999 9999
Q ss_pred Cee-cC--ceEEEeCCC
Q psy2204 115 INF-KG--QSLKIRRPH 128 (231)
Q Consensus 115 ~~l-~g--r~i~V~~~~ 128 (231)
..- .| ..|.|+++.
T Consensus 83 SqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 83 SQTMPGASSSLVVKFAD 99 (371)
T ss_pred cccCCCCccceEEEecc
Confidence 854 33 456666554
No 63
>KOG0144|consensus
Probab=99.18 E-value=3.7e-11 Score=105.18 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHH-HhCCCe-e
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAM-AFDGIN-F 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al-~lng~~-l 117 (231)
..|+||||-|+..+||.|++++|++|| .|+++++.+ +||||||.|++.+.|..|| .|||.. +
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG-----------~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFG-----------HIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhC-----------ccchhhheecccccccceeEEEEehHHHHHHHHHhhccceee
Confidence 478999999999999999999999999 566666654 5899999999999999999 999984 3
Q ss_pred cC--ceEEEeCCCCCCCCC
Q psy2204 118 KG--QSLKIRRPHDYQPTP 134 (231)
Q Consensus 118 ~g--r~i~V~~~~~~~~~~ 134 (231)
.| .+|.|+++...+++.
T Consensus 192 eGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccCCCceEEEecccCCCch
Confidence 44 689999887665553
No 64
>KOG0106|consensus
Probab=99.17 E-value=8.1e-11 Score=96.03 Aligned_cols=131 Identities=18% Similarity=0.388 Sum_probs=95.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEe
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 125 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~ 125 (231)
.++|||+|++.+.+.+|..||..|| .+.++.+. .||+||+|.+..+|..|+ .+|+..|.|-.+.|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg-----------~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve 68 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYG-----------KIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVE 68 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcc-----------ccccceee--cccceeccCchhhhhcccchhcCceecceeeeee
Confidence 4799999999999999999999999 56665554 589999999999999999 999999999888888
Q ss_pred CCCCCCCCCCCCCCCcccCCCCccc--CcCCCCCCcEEEcCCCCCCCHH-------------------------------
Q psy2204 126 RPHDYQPTPGVTDNAAVAVPAGVIS--TVVPDSPHKIFIGGLPNYLNED------------------------------- 172 (231)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ifV~nLp~~~tee------------------------------- 172 (231)
+++......+..... . ..+... .....+...++|.+++..+.|.
T Consensus 69 ~~r~~~~~~g~~~~g-~--r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 69 HARGKRRGRGRPRGG-D--RRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQED 145 (216)
T ss_pred cccccccccCCCCCC-C--ccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhh
Confidence 777432111110000 0 000000 0112234567777777777554
Q ss_pred --HHHHHhCCCeeCCeEEEEEEe
Q psy2204 173 --QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 173 --~Ai~~lnG~~i~gr~l~V~~a 193 (231)
.|++.|+|..+.++.|++...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 999999999999999999554
No 65
>KOG0130|consensus
Probab=99.13 E-value=8.9e-11 Score=88.01 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
+-..--|||.++...+||++|.+.|..||.|..+- .-++.+++.-||||+|+|++.++|.+|+ .+||..|.|.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNih-----LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH-----LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhccccccee-----eccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 33445699999999999999999999999443321 1123333444899999999999999999 99999999999
Q ss_pred EEEeCCC
Q psy2204 122 LKIRRPH 128 (231)
Q Consensus 122 i~V~~~~ 128 (231)
|.|.|+-
T Consensus 144 v~VDw~F 150 (170)
T KOG0130|consen 144 VSVDWCF 150 (170)
T ss_pred eeEEEEE
Confidence 9999764
No 66
>KOG0132|consensus
Probab=99.10 E-value=1.9e-10 Score=106.88 Aligned_cols=78 Identities=21% Similarity=0.393 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
-+||||||.|+.++++.||.++|+.|| .|.++.+..+++||||......+|.+|+ +|+...+.++.|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefG-----------eiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik 488 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFG-----------EIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIK 488 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcc-----------cceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeE
Confidence 469999999999999999999999999 8999999999999999999999999999 9999999999999
Q ss_pred EeCCCCCCCC
Q psy2204 124 IRRPHDYQPT 133 (231)
Q Consensus 124 V~~~~~~~~~ 133 (231)
|.|+..+-..
T Consensus 489 i~Wa~g~G~k 498 (894)
T KOG0132|consen 489 IAWAVGKGPK 498 (894)
T ss_pred EeeeccCCcc
Confidence 9998765433
No 67
>KOG4211|consensus
Probab=99.09 E-value=1.6e-09 Score=96.42 Aligned_cols=123 Identities=19% Similarity=0.304 Sum_probs=91.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe----cCCCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI----NLDKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~----~~~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
.....|-+.+|||++|++||++||+.++ |.++.+ .+..|-|||+|++++++++||+.+...+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~------------I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~ 75 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG------------IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGH 75 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc------------eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCC
Confidence 3445677889999999999999999985 555544 455799999999999999999999999999
Q ss_pred ceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHHHHHHHhCCCeeCCeEE
Q psy2204 120 QSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKKL 188 (231)
Q Consensus 120 r~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee~Ai~~lnG~~i~gr~l 188 (231)
|-|.|-........ |...+.+..+. .....|-+++||+.||+++..+.|.|++|...-|
T Consensus 76 RYIEVf~~~~~e~d-------~~~~~~g~~s~---~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi 134 (510)
T KOG4211|consen 76 RYIEVFTAGGAEAD-------WVMRPGGPNSS---ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGI 134 (510)
T ss_pred ceEEEEccCCcccc-------ccccCCCCCCC---CCCceEEecCCCccCcHHHHHHHhcCCcccccce
Confidence 99999866432211 11111111111 1224677899999999998888888888766533
No 68
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=3.1e-10 Score=77.19 Aligned_cols=62 Identities=13% Similarity=0.313 Sum_probs=46.8
Q ss_pred HHHHHHHHH----HhhhhhhccccCCCCeeeeEe--cCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEe
Q psy2204 60 EDEMMEFFN----QQMHLSGLAQAAGNPVLACQI--NLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 125 (231)
Q Consensus 60 e~~L~~~F~----~~G~~~~~~~~~~~~i~~~~~--~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~ 125 (231)
+++|+++|+ .||.+.++.. .+.+... .+++|||||+|.+.++|.+|+ .|||..+.||.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~----v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINK----IYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEE----EEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999999 9995443310 0111112 456899999999999999999 999999999999863
No 69
>KOG0109|consensus
Probab=99.01 E-value=2.9e-10 Score=95.18 Aligned_cols=75 Identities=27% Similarity=0.578 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
++.+.+|+||||.+.++.+||+..|++|| +++.+++. |+|+||.|.-.++|..|+ .||+.+|.|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~yg-----------pviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYG-----------PVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccC-----------Cceeeeee--cceeEEEEeeccchHHHHhcccccccccce
Confidence 56788999999999999999999999999 88888887 689999999999999999 99999999999
Q ss_pred EEEeCCCCC
Q psy2204 122 LKIRRPHDY 130 (231)
Q Consensus 122 i~V~~~~~~ 130 (231)
++|+.+..+
T Consensus 142 m~vq~stsr 150 (346)
T KOG0109|consen 142 MHVQLSTSR 150 (346)
T ss_pred eeeeeeccc
Confidence 999966544
No 70
>KOG1190|consensus
Probab=98.96 E-value=3e-08 Score=86.68 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=98.8
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCC-cEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 46 ARRLYVGNIPF-GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK-NFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 46 ~r~lfVgNLp~-~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k-g~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
...|.|.||.. .+|.+.|..+|.-|| .|..+++..+| --|.|.|.+...|.-|+ .|+|..++|++|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYG-----------dVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~l 365 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYG-----------DVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKL 365 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhc-----------ceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceE
Confidence 56788999986 569999999999999 89999887664 68999999999999999 999999999999
Q ss_pred EEeCCCCCCCCC---CCCC---------CCcccCCC-Cc-ccCcCCCCCCcEEEcCCCCCCCHH----------------
Q psy2204 123 KIRRPHDYQPTP---GVTD---------NAAVAVPA-GV-ISTVVPDSPHKIFIGGLPNYLNED---------------- 172 (231)
Q Consensus 123 ~V~~~~~~~~~~---~~~~---------~~~~~~~~-~~-~~~~~~~~~~~ifV~nLp~~~tee---------------- 172 (231)
+|..++-..-.. +... .+..++.. +. .-...-....+|.+.|+|.+++||
T Consensus 366 rvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkaf 445 (492)
T KOG1190|consen 366 RVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAF 445 (492)
T ss_pred EEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEee
Confidence 999775322110 0000 00001100 00 000011223588899999999999
Q ss_pred ---------------------HHHHHhCCCeeCCe-EEEEEEee
Q psy2204 173 ---------------------QAIAGLNGMQLGDK-KLIVQRAS 194 (231)
Q Consensus 173 ---------------------~Ai~~lnG~~i~gr-~l~V~~a~ 194 (231)
.|+..++.+.+++. .|||+|+.
T Consensus 446 kff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 446 KFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred eecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 55666777788764 88998876
No 71
>KOG4661|consensus
Probab=98.95 E-value=1.1e-09 Score=99.03 Aligned_cols=82 Identities=12% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
..+|.|||.+|...+...+|+.+|++||+|.... .|...+..--+.|+||++.+.++|.+|| .|+.++|+||.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAK-----VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmI 477 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAK-----VVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMI 477 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceecee-----eeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceee
Confidence 4569999999999999999999999999766543 3334444444799999999999999999 999999999999
Q ss_pred EEeCCCCC
Q psy2204 123 KIRRPHDY 130 (231)
Q Consensus 123 ~V~~~~~~ 130 (231)
.|..+++.
T Consensus 478 SVEkaKNE 485 (940)
T KOG4661|consen 478 SVEKAKNE 485 (940)
T ss_pred eeeecccC
Confidence 99977654
No 72
>KOG1457|consensus
Probab=98.95 E-value=4.4e-09 Score=85.25 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=58.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-cCC----CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLD----KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-~~~----kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
..-|||||.+||.++...||+.+|..|-.- +-.-+++ .+. +-+||+.|.+..+|..|+ .|||..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GY---------EgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrF 102 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGY---------EGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRF 102 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCc---------cceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeee
Confidence 346899999999999999999999987411 1111222 222 479999999999999999 9999999
Q ss_pred c---CceEEEeCCC
Q psy2204 118 K---GQSLKIRRPH 128 (231)
Q Consensus 118 ~---gr~i~V~~~~ 128 (231)
+ +..|+|..++
T Consensus 103 DpE~~stLhiElAK 116 (284)
T KOG1457|consen 103 DPETGSTLHIELAK 116 (284)
T ss_pred ccccCceeEeeehh
Confidence 6 5677776443
No 73
>KOG0129|consensus
Probab=98.91 E-value=6.6e-09 Score=93.13 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=84.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCc---EEEEEecCHHHHHHHH-HhCC
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN---FAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg---~aFV~F~~~~~a~~Al-~lng 114 (231)
+....+-+|+||||+||++++|++|...|..||. +..++............+| |+|+.|+++.++...| +..-
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 3455667899999999999999999999999993 3333332233333344577 9999999999999887 3322
Q ss_pred CeecCce--EEEeCCCCCCCCCCCCCCCcccCCCC--cccCcCCCCCCcEEEcCCCCCCCHHHHHHHhC
Q psy2204 115 INFKGQS--LKIRRPHDYQPTPGVTDNAAVAVPAG--VISTVVPDSPHKIFIGGLPNYLNEDQAIAGLN 179 (231)
Q Consensus 115 ~~l~gr~--i~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ifV~nLp~~~tee~Ai~~ln 179 (231)
...+ ++|.-++-+.. ..+-.+|...... ...+...|..+|||||+||.-++.++...-|+
T Consensus 329 ---~~~~~yf~vss~~~k~k--~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd 392 (520)
T KOG0129|consen 329 ---GEGNYYFKVSSPTIKDK--EVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIME 392 (520)
T ss_pred ---cccceEEEEecCccccc--ceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHH
Confidence 3333 33443322221 1222333332221 12334456678999999999999984444444
No 74
>KOG1548|consensus
Probab=98.90 E-value=1.3e-08 Score=87.28 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-----cCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-----~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
-...|||+|||.++|.+++.++|++||.|.+-.+. + --.+++ ++-||=|.+.|.-.+++.-|+ .|++..|.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t-~--epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQT-G--EPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCC-C--CeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34569999999999999999999999955432111 1 112222 233799999999999999999 99999999
Q ss_pred CceEEEeCCC
Q psy2204 119 GQSLKIRRPH 128 (231)
Q Consensus 119 gr~i~V~~~~ 128 (231)
|+.|+|.+++
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999775
No 75
>KOG0415|consensus
Probab=98.89 E-value=2.3e-09 Score=92.01 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
...+.+.|||.-|++-+|+++|.-+|+.||+|.+.. .|.+.+++-+--||||+|++.+++++|. +|+...+++|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sce-----VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCE-----VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeee-----EEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 445678999999999999999999999999655442 4455555555689999999999999999 9999999999
Q ss_pred eEEEeCCC
Q psy2204 121 SLKIRRPH 128 (231)
Q Consensus 121 ~i~V~~~~ 128 (231)
.|.|.++.
T Consensus 310 RIHVDFSQ 317 (479)
T KOG0415|consen 310 RIHVDFSQ 317 (479)
T ss_pred eEEeehhh
Confidence 99998654
No 76
>KOG4212|consensus
Probab=98.87 E-value=5e-09 Score=92.18 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=64.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
....+.+.+|||.|||+++|++-|++-|..|| .+...+++.+ +.-+.|.|.++++|++|+ .|||..|
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G-----------~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l 598 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIG-----------HVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRL 598 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhcc-----------ceehhhhhccCCccceEEecCHHHHHHHHHHhccCcc
Confidence 45667888999999999999999999999999 5665555322 334489999999999999 9999999
Q ss_pred cCceEEEeC
Q psy2204 118 KGQSLKIRR 126 (231)
Q Consensus 118 ~gr~i~V~~ 126 (231)
.||.|+|.+
T Consensus 599 ~Gr~I~V~y 607 (608)
T KOG4212|consen 599 DGRNIKVTY 607 (608)
T ss_pred cCceeeeee
Confidence 999999975
No 77
>KOG0131|consensus
Probab=98.86 E-value=3.7e-09 Score=83.20 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
-+.+||||||.++++|..|.+.|+.||.+.+.= +...+..+...++||||.|.+.+.+.+|+ .+||+.+..|+|.
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P----~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPP----KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCC----cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 346899999999999999999999999655421 12334455667899999999999999999 9999999999999
Q ss_pred EeCCCCC
Q psy2204 124 IRRPHDY 130 (231)
Q Consensus 124 V~~~~~~ 130 (231)
|.++...
T Consensus 171 v~ya~k~ 177 (203)
T KOG0131|consen 171 VSYAFKK 177 (203)
T ss_pred EEEEEec
Confidence 9977543
No 78
>KOG0146|consensus
Probab=98.77 E-value=5.4e-09 Score=86.80 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
...+...|||-.||.+..+.||...|-.||+|.+.+ ..+|.-+..+|.|+||.|.+..++..|| .|||..+.-+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaK-----VFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAK-----VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeee-----eeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 445678999999999999999999999999777653 4566666778999999999999999999 9999999999
Q ss_pred eEEEeCCCCC
Q psy2204 121 SLKIRRPHDY 130 (231)
Q Consensus 121 ~i~V~~~~~~ 130 (231)
+|+|...+++
T Consensus 356 RLKVQLKRPk 365 (371)
T KOG0146|consen 356 RLKVQLKRPK 365 (371)
T ss_pred hhhhhhcCcc
Confidence 9998855543
No 79
>KOG4205|consensus
Probab=98.77 E-value=5.2e-09 Score=90.39 Aligned_cols=83 Identities=18% Similarity=0.406 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEEEe
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~V~ 125 (231)
.+++|||.||+++++++++++|.+||.|..+. ...+....+.+||+||.|.+++++++++....+.|.|+.+.|.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~-----~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV-----IMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeE-----EeecccccccccceeeEeccccccceecccceeeecCceeeEe
Confidence 56899999999999999999999999555443 3344455666899999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy2204 126 RPHDYQPT 133 (231)
Q Consensus 126 ~~~~~~~~ 133 (231)
++.++...
T Consensus 172 rA~pk~~~ 179 (311)
T KOG4205|consen 172 RAIPKEVM 179 (311)
T ss_pred eccchhhc
Confidence 88766544
No 80
>KOG0124|consensus
Probab=98.76 E-value=1.5e-08 Score=87.50 Aligned_cols=74 Identities=19% Similarity=0.503 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
+.-++|||..+.++.+|+||+.+|+-|| +|+.+++.+ +|||+|++|.+..+...|| .||=..
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG-----------~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD 276 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFG-----------EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD 276 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhc-----------ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhh
Confidence 5568999999999999999999999999 788777743 5899999999999999999 999999
Q ss_pred ecCceEEEeCCC
Q psy2204 117 FKGQSLKIRRPH 128 (231)
Q Consensus 117 l~gr~i~V~~~~ 128 (231)
|.|..|+|.+..
T Consensus 277 LGGQyLRVGk~v 288 (544)
T KOG0124|consen 277 LGGQYLRVGKCV 288 (544)
T ss_pred cccceEeccccc
Confidence 999999998554
No 81
>KOG0110|consensus
Probab=98.68 E-value=2e-08 Score=92.89 Aligned_cols=75 Identities=21% Similarity=0.422 Sum_probs=67.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
..+|+|.|||+..+..+++++|..|| .++++++.+. +|||||+|-+..+|.+|+ .|.++.|.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFG-----------qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly 681 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFG-----------QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY 681 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhccc-----------ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee
Confidence 57899999999999999999999999 6777766543 899999999999999999 99999999
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
||.|.+.|++...
T Consensus 682 GRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 682 GRRLVLEWAKSDN 694 (725)
T ss_pred chhhheehhccch
Confidence 9999999987543
No 82
>KOG4208|consensus
Probab=98.68 E-value=2.5e-08 Score=79.96 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=63.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhh-hhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~-~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
.....--+||+.+|+.+.+.++..+|.+||. +..+. .-++.+++.+||||||+|++++.|+-|- .||+..|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r-----lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR-----LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEE-----eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 3344557899999999999999999999952 22110 0133344556899999999999999999 999999999
Q ss_pred ceEEEeCC
Q psy2204 120 QSLKIRRP 127 (231)
Q Consensus 120 r~i~V~~~ 127 (231)
+-|.|..-
T Consensus 120 ~lL~c~vm 127 (214)
T KOG4208|consen 120 HLLECHVM 127 (214)
T ss_pred heeeeEEe
Confidence 99998843
No 83
>KOG4209|consensus
Probab=98.65 E-value=1.9e-08 Score=83.78 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-cCCCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-~~~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
..+-+.+.+||||+.+.+|.+++...|+.||.+..++ |...+. ...|||+||+|.+.+.+.+++.|||..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~t------i~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~ 169 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVT------VPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG 169 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCcccee------eeccccCCCcceeEEEecccHhhhHHHhhcCCccccc
Confidence 4556778999999999999999999999999776552 333333 456999999999999999999999999999
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
+.|.|...+..
T Consensus 170 ~~i~vt~~r~~ 180 (231)
T KOG4209|consen 170 PAIEVTLKRTN 180 (231)
T ss_pred ccceeeeeeee
Confidence 99999865543
No 84
>KOG0116|consensus
Probab=98.62 E-value=1.1e-07 Score=85.14 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-cCCCcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
+...+|||+|||++++.++|+++|..||.|... .|..... .+...||||+|.+.+++..+|.-+-..+.+++|
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~------~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl 359 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEG------GIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKL 359 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhccccccc------ceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeE
Confidence 344679999999999999999999999955432 1111110 222389999999999999999777889999999
Q ss_pred EEeCCCC
Q psy2204 123 KIRRPHD 129 (231)
Q Consensus 123 ~V~~~~~ 129 (231)
.|...+.
T Consensus 360 ~Veek~~ 366 (419)
T KOG0116|consen 360 NVEEKRP 366 (419)
T ss_pred EEEeccc
Confidence 9985543
No 85
>KOG4454|consensus
Probab=98.60 E-value=1.7e-08 Score=81.60 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCC----cEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK----NFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k----g~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
...|+|||+|+...++|+-|.++|-+.| +|+.+.|...+ .||||+|+++-++.-|+ .+||..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaG-----------PV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAG-----------PVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccC-----------ceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 3467999999999999999999999999 77777775432 49999999999999999 99999999
Q ss_pred CceEEEeC
Q psy2204 119 GQSLKIRR 126 (231)
Q Consensus 119 gr~i~V~~ 126 (231)
+++|.+..
T Consensus 76 ~~e~q~~~ 83 (267)
T KOG4454|consen 76 EDEEQRTL 83 (267)
T ss_pred cchhhccc
Confidence 99988873
No 86
>KOG4660|consensus
Probab=98.58 E-value=6.3e-08 Score=87.57 Aligned_cols=70 Identities=20% Similarity=0.390 Sum_probs=62.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
.-..++|+|-|||..+++++|+.+|+.|| +|+.++..++ ++..||+|.|..+|+.|+ +||+.++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yG-----------eir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYG-----------EIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhc-----------chhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 34668999999999999999999999999 5555555443 699999999999999999 9999999999
Q ss_pred eEE
Q psy2204 121 SLK 123 (231)
Q Consensus 121 ~i~ 123 (231)
.|+
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 988
No 87
>KOG0226|consensus
Probab=98.56 E-value=8.7e-08 Score=79.15 Aligned_cols=79 Identities=18% Similarity=0.367 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
...+||+|.|.-+++++-|-..|.+|=...... .|++.++.++|||+||.|.+..++..|+ +|||+.++.|.|+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~ak-----viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAK-----VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhcc-----ccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 446899999999999999999999886544433 5788899999999999999999999999 9999999999999
Q ss_pred EeCCC
Q psy2204 124 IRRPH 128 (231)
Q Consensus 124 V~~~~ 128 (231)
++...
T Consensus 264 lRkS~ 268 (290)
T KOG0226|consen 264 LRKSE 268 (290)
T ss_pred hhhhh
Confidence 88543
No 88
>KOG0151|consensus
Probab=98.56 E-value=1.9e-07 Score=86.52 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---------CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---------KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---------kg~aFV~F~~~~~a~~Al-~lng 114 (231)
....|||+||++.++++.|...|..|| +|.+++++-. +.|+||-|-+..|+++|+ .|+|
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfg-----------PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFG-----------PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccC-----------cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 456799999999999999999999999 7777777533 589999999999999999 9999
Q ss_pred CeecCceEEEeCCC
Q psy2204 115 INFKGQSLKIRRPH 128 (231)
Q Consensus 115 ~~l~gr~i~V~~~~ 128 (231)
..+.+..+++.|.+
T Consensus 242 ~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 242 IIVMEYEMKLGWGK 255 (877)
T ss_pred eeeeeeeeeecccc
Confidence 99999999999885
No 89
>KOG0533|consensus
Probab=98.52 E-value=3e-07 Score=76.69 Aligned_cols=74 Identities=20% Similarity=0.447 Sum_probs=62.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-----cCCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-----~~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
+.-+.+|+|.||++.+++++|+++|..|| .+..+-+ +++.|.|-|.|...+||..|+ .+|+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~-----------~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFG-----------ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA 148 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhc-----------cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc
Confidence 33446799999999999999999999998 3443333 444699999999999999999 999999
Q ss_pred ecCceEEEeCC
Q psy2204 117 FKGQSLKIRRP 127 (231)
Q Consensus 117 l~gr~i~V~~~ 127 (231)
++|+.+++...
T Consensus 149 ldG~~mk~~~i 159 (243)
T KOG0533|consen 149 LDGRPMKIEII 159 (243)
T ss_pred cCCceeeeEEe
Confidence 99999888733
No 90
>KOG0120|consensus
Probab=98.49 E-value=4.3e-07 Score=82.61 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
......++|||+||...++.+++++...||.+..+. -+.+...+-+|||||.+|.+......|+ .|||..+.++
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~-----lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR-----LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhhe-----eecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 345567999999999999999999999999554442 2333344566999999999999999999 9999999999
Q ss_pred eEEEeCCC
Q psy2204 121 SLKIRRPH 128 (231)
Q Consensus 121 ~i~V~~~~ 128 (231)
+|.|+++.
T Consensus 360 ~lvvq~A~ 367 (500)
T KOG0120|consen 360 KLVVQRAI 367 (500)
T ss_pred eeEeehhh
Confidence 99998554
No 91
>KOG2193|consensus
Probab=98.31 E-value=1.4e-07 Score=82.83 Aligned_cols=113 Identities=25% Similarity=0.379 Sum_probs=88.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC-eecCceEEE
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGI-NFKGQSLKI 124 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~-~l~gr~i~V 124 (231)
+.+|+|||.+..+.++|+.+|...- .-.+-.+....||+||.+.+..++.+|+ .++|+ ++.|+++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-----------~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-----------IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-----------CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeec
Confidence 4799999999999999999998652 1223333444699999999999999999 88887 678988888
Q ss_pred eCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------------------
Q psy2204 125 RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------------------- 172 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------------------- 172 (231)
...-+... ..+++-|.|+|....|+
T Consensus 71 ~~sv~kkq-----------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~ 127 (584)
T KOG2193|consen 71 EHSVPKKQ-----------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYS 127 (584)
T ss_pred cchhhHHH-----------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHH
Confidence 75543221 13567777888777777
Q ss_pred ------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 173 ------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 173 ------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
.||..|||..+....++|.+-
T Consensus 128 ~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 128 AQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 899999999999999988764
No 92
>KOG1190|consensus
Probab=98.23 E-value=3.7e-05 Score=67.66 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=56.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeee-EecCCCcE-EEEEecCHHHHHHHH-HhCCCeecC--ceE
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC-QINLDKNF-AFLEFRSIDETTQAM-AFDGINFKG--QSL 122 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~-~~~~~kg~-aFV~F~~~~~a~~Al-~lng~~l~g--r~i 122 (231)
+++|+|+-+-++-+-|..+|++|| .|..+ .+.++.+| |.|.|.+.++|..|- .|+|..+.. ..|
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG-----------~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtL 220 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFG-----------FVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTL 220 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcc-----------eeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEE
Confidence 578999999999999999999999 44443 34566676 999999999999998 999998854 346
Q ss_pred EEeCC
Q psy2204 123 KIRRP 127 (231)
Q Consensus 123 ~V~~~ 127 (231)
+|.++
T Consensus 221 rId~S 225 (492)
T KOG1190|consen 221 RIDFS 225 (492)
T ss_pred Eeehh
Confidence 66533
No 93
>KOG1457|consensus
Probab=98.21 E-value=1.5e-06 Score=70.74 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.--+|||.||..+++|++|+.+|+.|- |..+..++-.-.-..||++|++.+.|..|| .|.|..+.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~---------gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYP---------GFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCC---------CceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 336899999999999999999999994 546666655444568999999999999999 99987663
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.19 E-value=1.5e-05 Score=55.35 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=46.9
Q ss_pred eEEEcCCCCCCCHHHH----HHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 48 RLYVGNIPFGVTEDEM----MEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L----~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
.|||.|||.+.+...| +.++..|| ..|..+. .+.|+|.|.+.+.|.+|. .|+|..+.|++|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCG----------GkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCG----------GKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT------------EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccC----------CEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 6899999999887654 66666776 3677662 589999999999999999 999999999999
Q ss_pred EEeCCC
Q psy2204 123 KIRRPH 128 (231)
Q Consensus 123 ~V~~~~ 128 (231)
.|++..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999774
No 95
>KOG1456|consensus
Probab=98.11 E-value=9.3e-05 Score=64.57 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=102.6
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCC-cEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 41 TITRQARRLYVGNIPFG-VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK-NFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~-~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k-g~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
....++.-+-|-+|... +.-+.|..+|..|| .|..+++++.| |-|.|++-+...+++|+ -||+..+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG-----------NV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~l 350 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG-----------NVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPL 350 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcC-----------ceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCcc
Confidence 44445677889999985 46678999999999 89999998875 99999999999999999 9999999
Q ss_pred cCceEEEeCCCCCCCCCC----C------------CCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHHHHHHHhCCC
Q psy2204 118 KGQSLKIRRPHDYQPTPG----V------------TDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNGM 181 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee~Ai~~lnG~ 181 (231)
.|.+|.|..++...-.+. . +++..+..+.....+......+.|..-|.|..+|||.-+.-+|-+
T Consensus 351 fG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek 430 (494)
T KOG1456|consen 351 FGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEK 430 (494)
T ss_pred ccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhc
Confidence 999999986653211110 0 001111111122223334445678788999999999999989988
Q ss_pred eeCCeEEEEEEee
Q psy2204 182 QLGDKKLIVQRAS 194 (231)
Q Consensus 182 ~i~gr~l~V~~a~ 194 (231)
...-.+++|--.+
T Consensus 431 ~v~~~svkvFp~k 443 (494)
T KOG1456|consen 431 DVPPTSVKVFPLK 443 (494)
T ss_pred CCCcceEEeeccc
Confidence 8875555554443
No 96
>KOG0112|consensus
Probab=97.99 E-value=3.4e-06 Score=80.26 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=91.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
-.....+++||+|||+..+++.+|+..|..+|++.++ .|..-.+...-.|+||.|.+.+.+..|. ++.+..|.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~V------DiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEV------DIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhcccccc------ccccCCCCcccchhhhhhhccccCcccchhhcCCccc
Confidence 3455678999999999999999999999999944433 2222223333579999999999999998 88888776
Q ss_pred CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------------
Q psy2204 119 GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------------- 172 (231)
Q Consensus 119 gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------------- 172 (231)
.-.+++......... .+.+|+++|..-+...
T Consensus 440 ~g~~r~glG~~kst~-----------------------ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi 496 (975)
T KOG0112|consen 440 NGTHRIGLGQPKSTP-----------------------TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYI 496 (975)
T ss_pred cCccccccccccccc-----------------------ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceee
Confidence 444444433211000 1122222222222111
Q ss_pred ---------HHHHHhCCCeeCC--eEEEEEEeecCcccccCCC
Q psy2204 173 ---------QAIAGLNGMQLGD--KKLIVQRASVGAKNASGQQ 204 (231)
Q Consensus 173 ---------~Ai~~lnG~~i~g--r~l~V~~a~~~~~~~~~~~ 204 (231)
.|+..|-|..|++ ++|+|.+|...+.....++
T Consensus 497 ~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~Pqq~~ 539 (975)
T KOG0112|consen 497 QYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGATPQQNL 539 (975)
T ss_pred ecccCccchhhHHHHhcCcCCCCCcccccccccCCCCChhhhc
Confidence 8999999999996 8899999997766555333
No 97
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.95 E-value=8e-05 Score=57.74 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=38.4
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||+++|++ .|+..|||..|.|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345799999999999998 899999999999999999999
Q ss_pred ecCc
Q psy2204 194 SVGA 197 (231)
Q Consensus 194 ~~~~ 197 (231)
....
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7553
No 98
>KOG0106|consensus
Probab=97.84 E-value=1.1e-05 Score=66.09 Aligned_cols=70 Identities=26% Similarity=0.507 Sum_probs=60.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
......++|-|+...+.+.+|.+.|..+| .+..... ..+++||+|++.+++.+|| .+++..+.++.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g-----------~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~ 162 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAG-----------EVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRR 162 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccC-----------CCchhhh--hccccceeehhhhhhhhcchhccchhhcCce
Confidence 45567899999999999999999999999 4432222 4799999999999999999 99999999999
Q ss_pred EEEe
Q psy2204 122 LKIR 125 (231)
Q Consensus 122 i~V~ 125 (231)
|.+.
T Consensus 163 l~~~ 166 (216)
T KOG0106|consen 163 ISVE 166 (216)
T ss_pred eeec
Confidence 9994
No 99
>KOG4206|consensus
Probab=97.67 E-value=0.00022 Score=58.28 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=63.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
.....+.+.||+.|||.+++.+.|..+|++|. -...+++... ++.|||+|.+...+..|. .+.+..+
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~-----------g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFP-----------GFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCc-----------ccceeEeccCCCceeEEecchhhhhHHHhhhhcccee
Confidence 34456778999999999999999999999997 5667777664 699999999999999999 8888877
Q ss_pred c-CceEEEeCC
Q psy2204 118 K-GQSLKIRRP 127 (231)
Q Consensus 118 ~-gr~i~V~~~ 127 (231)
. ...+.|.++
T Consensus 209 t~~~~m~i~~a 219 (221)
T KOG4206|consen 209 TKKNTMQITFA 219 (221)
T ss_pred ccCceEEeccc
Confidence 6 666666654
No 100
>KOG0128|consensus
Probab=97.64 E-value=7.2e-06 Score=77.75 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=57.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCee-eeEecCCCcEEEEEecCHHHHHHHHHhCCCe
Q psy2204 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVL-ACQINLDKNFAFLEFRSIDETTQAMAFDGIN 116 (231)
Q Consensus 38 ~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~-~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~ 116 (231)
..+...++..++||+||+..+.+++|...|..+|.+..+ .|. .+.-.+-||+||++|...+++.+|++++...
T Consensus 659 vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~v------qi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 659 VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVV------QIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhH------HHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 334444666789999999999999999999999854433 222 1222344799999999999999999777777
Q ss_pred ecCc
Q psy2204 117 FKGQ 120 (231)
Q Consensus 117 l~gr 120 (231)
+.|+
T Consensus 733 ~~gK 736 (881)
T KOG0128|consen 733 FFGK 736 (881)
T ss_pred hhhh
Confidence 7664
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.62 E-value=0.00015 Score=53.20 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=37.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
-|+|.+++..++.++|++.|+.|| .|.-|++.+.-..|||.|.+.++|.+|+ .+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g-----------~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFG-----------EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS-------------EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcC-----------CcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 478888999999999999999999 8888999888889999999999999998 443
No 102
>KOG4211|consensus
Probab=97.61 E-value=0.00014 Score=65.41 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=55.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeee-------EecCCCcEEEEEecCHHHHHHHHHhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC-------QINLDKNFAFLEFRSIDETTQAMAFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~-------~~~~~kg~aFV~F~~~~~a~~Al~lng~~ 116 (231)
...-.|=+.+||+.||++||.+||+.. .|+.. .-.+..|-|||.|++.+.|++||..|...
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL------------~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~ 168 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGL------------EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHREN 168 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCC------------cccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHh
Confidence 344567789999999999999999964 33332 22344689999999999999999888888
Q ss_pred ecCceEEEe
Q psy2204 117 FKGQSLKIR 125 (231)
Q Consensus 117 l~gr~i~V~ 125 (231)
+.-|-|+|-
T Consensus 169 iGhRYIEvF 177 (510)
T KOG4211|consen 169 IGHRYIEVF 177 (510)
T ss_pred hccceEEee
Confidence 888888885
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00021 Score=45.67 Aligned_cols=52 Identities=17% Similarity=0.398 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM 110 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al 110 (231)
+.|-|.+.+.+.. +.++.+|.+|| .|.+..+...+.+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fG-----------eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFG-----------EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcC-----------CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5677888877665 45666999999 8999999878899999999999999986
No 104
>KOG1365|consensus
Probab=97.59 E-value=0.00021 Score=62.66 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=71.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe--cCCCcEEEEEecCHHHHHHHHHhCCCeecCceEEEe
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI--NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~--~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~V~ 125 (231)
-|-.++||+++++.++.+||...-.+..-+ ..|+-++- ++..|=|||.|..+++|..||.-|...+..|.|++-
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~----egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGT----EGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCc----cceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345679999999999999996332111110 02333322 344699999999999999999888888888877765
Q ss_pred CCCCC--------CCCCCCCCCCcccCCCCcccCcCC--CCCCcEEEcCCCCCCCHH
Q psy2204 126 RPHDY--------QPTPGVTDNAAVAVPAGVISTVVP--DSPHKIFIGGLPNYLNED 172 (231)
Q Consensus 126 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ifV~nLp~~~tee 172 (231)
++... ......-.......-.+......+ .+..+|-+++|||+.+.|
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvE 295 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVE 295 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHH
Confidence 44311 000001000000000011111111 124678899999999998
No 105
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.58 E-value=0.00057 Score=49.27 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=54.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCe----eeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC--
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPV----LACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG-- 119 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i----~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g-- 119 (231)
.||=|.|||...|.++|.+++..... ..+ .. .|.+..-+.|||||-|.+.+.+.+-. .++|..+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~-g~y------DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~ 74 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK-GKY------DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN 74 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc-Ccc------eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC
Confidence 47899999999999999999987531 000 12 22333445799999999999999998 999998853
Q ss_pred --ceEEEeCCC
Q psy2204 120 --QSLKIRRPH 128 (231)
Q Consensus 120 --r~i~V~~~~ 128 (231)
+...|.+++
T Consensus 75 s~Kvc~i~yAr 85 (97)
T PF04059_consen 75 SKKVCEISYAR 85 (97)
T ss_pred CCcEEEEehhH
Confidence 334455543
No 106
>KOG1456|consensus
Probab=97.56 E-value=0.00081 Score=58.83 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=60.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH---HhCCCeecCce
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM---AFDGINFKGQS 121 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al---~lng~~l~gr~ 121 (231)
.+--|-|++|-..++|.+|.+-++.|| .|.-+..+..+..+.|+|++.+.|++|+ +-|...+.|..
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG-----------~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFG-----------PIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCC-----------ceEEEEeccccceeeeeeccccchhhheehhccCcccccCch
Confidence 345789999999999999999999999 8888888889999999999999999998 44555666766
Q ss_pred EEEeCC
Q psy2204 122 LKIRRP 127 (231)
Q Consensus 122 i~V~~~ 127 (231)
-.+.++
T Consensus 99 Al~NyS 104 (494)
T KOG1456|consen 99 ALFNYS 104 (494)
T ss_pred hhcccc
Confidence 666655
No 107
>KOG0105|consensus
Probab=97.52 E-value=0.00037 Score=55.46 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=58.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 38 ~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.++++.+...+|.|.+||...++++|+++..+.| .+.-..+.++ |++.|+|...|+++.|+ .|+.+.
T Consensus 107 rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG-----------dvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 107 RGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG-----------DVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred cCCcccccceeEEEecCCCCCchHHHHHHHHhhC-----------Ceeeeeeecc-cceeeeeeehhhHHHHHHhhcccc
Confidence 4466677888999999999999999999999999 5655555554 79999999999999999 888877
Q ss_pred ec
Q psy2204 117 FK 118 (231)
Q Consensus 117 l~ 118 (231)
+.
T Consensus 175 ~~ 176 (241)
T KOG0105|consen 175 FR 176 (241)
T ss_pred cc
Confidence 74
No 108
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.47 E-value=0.00026 Score=61.09 Aligned_cols=76 Identities=21% Similarity=0.436 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHHHHhhhhhhccccCCCCeeeeEec-CC--CcE--EEEEecCHHHHHHHH-HhC
Q psy2204 46 ARRLYVGNIPFGVTEDE----M--MEFFNQQMHLSGLAQAAGNPVLACQIN-LD--KNF--AFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~----L--~~~F~~~G~~~~~~~~~~~~i~~~~~~-~~--kg~--aFV~F~~~~~a~~Al-~ln 113 (231)
.+-+||-+|++.+-.++ | .++|.+||+|..+ ++..+.. .+ .+. .||+|.+.++|.+|| +.+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KI-------vvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD 186 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKI-------VVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD 186 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEE-------EecccccccccccccceEEEEecchHHHHHHHHHhc
Confidence 35789999999886665 2 6899999955533 2222221 11 132 399999999999999 999
Q ss_pred CCeecCceEEEeCCC
Q psy2204 114 GINFKGQSLKIRRPH 128 (231)
Q Consensus 114 g~~l~gr~i~V~~~~ 128 (231)
|..++||-|+..+..
T Consensus 187 gs~~DGr~lkatYGT 201 (480)
T COG5175 187 GSLLDGRVLKATYGT 201 (480)
T ss_pred cccccCceEeeecCc
Confidence 999999999987554
No 109
>KOG1995|consensus
Probab=97.45 E-value=0.00023 Score=61.76 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhcccc--CCCC-eeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQA--AGNP-VLACQINLDKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~--~~~~-i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
.......-++||-+|+..+++++|.++|.+++.|..-... +-.. -++.++.+.|+-|.|.|.+...|+.|+ -+++.
T Consensus 60 ~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 60 MADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 3345566789999999999999999999999966433211 1111 134455667899999999999999999 99999
Q ss_pred eecCceEEEeCCCC
Q psy2204 116 NFKGQSLKIRRPHD 129 (231)
Q Consensus 116 ~l~gr~i~V~~~~~ 129 (231)
.|.+..|+|..+..
T Consensus 140 df~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 140 DFCGNTIKVSLAER 153 (351)
T ss_pred cccCCCchhhhhhh
Confidence 99999999985543
No 110
>KOG1548|consensus
Probab=97.30 E-value=0.0018 Score=56.10 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=63.5
Q ss_pred CCCCCCCCCeEEEcCCCC----CCC-------HHHHHHHHHHhhhhhhccccCCCCeeeeEec--CCCcEEEEEecCHHH
Q psy2204 39 GSTITRQARRLYVGNIPF----GVT-------EDEMMEFFNQQMHLSGLAQAAGNPVLACQIN--LDKNFAFLEFRSIDE 105 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~----~~t-------e~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~--~~kg~aFV~F~~~~~ 105 (231)
++.-.+..++|.+.|+=. ..+ .++|++-.++|| .|.++.+. ++.|.+-|.|.+.++
T Consensus 258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G-----------~v~~vvv~d~hPdGvvtV~f~n~ee 326 (382)
T KOG1548|consen 258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFG-----------QVRKVVVYDRHPDGVVTVSFRNNEE 326 (382)
T ss_pred ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhC-----------CcceEEEeccCCCceeEEEeCChHH
Confidence 455567789999999843 334 356667788999 77777775 668999999999999
Q ss_pred HHHHH-HhCCCeecCceEEEeCCC
Q psy2204 106 TTQAM-AFDGINFKGQSLKIRRPH 128 (231)
Q Consensus 106 a~~Al-~lng~~l~gr~i~V~~~~ 128 (231)
|..|| .|+|..|.||.|......
T Consensus 327 A~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 327 ADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHhcCeeecceEEEEEEeC
Confidence 99999 999999999999877443
No 111
>KOG4307|consensus
Probab=97.28 E-value=0.00071 Score=63.38 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=56.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCe-eeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPV-LACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i-~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
|-|-+.|+|++++-+||.+||..|--+- +..+ +.-+-++..|-|.|-|++.++|..|. .++++.|..|.+++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p------~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDP------NSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCC------CceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 3677999999999999999999984111 1011 11111333699999999999999999 99999999999887
Q ss_pred e
Q psy2204 125 R 125 (231)
Q Consensus 125 ~ 125 (231)
.
T Consensus 942 ~ 942 (944)
T KOG4307|consen 942 R 942 (944)
T ss_pred E
Confidence 5
No 112
>KOG4210|consensus
Probab=97.26 E-value=0.0006 Score=58.74 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCC-eecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGI-NFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~-~l~gr~i 122 (231)
+...++|+|++.+++.+.+...+|..+|...... -+..-.....++++++.|...+.+..|+.+.+. .+.++.+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~-----~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDAR-----SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccch-----hhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 4567899999999999999999999998332210 011112234589999999999999999977775 5555554
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEE-EcCCCCCCCHH-----------------------------
Q psy2204 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF-IGGLPNYLNED----------------------------- 172 (231)
Q Consensus 123 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if-V~nLp~~~tee----------------------------- 172 (231)
.......+..... ............++| |++|++.++++
T Consensus 161 ~~dl~~~~~~~~~-----------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~ 229 (285)
T KOG4210|consen 161 EKDLNTRRGLRPK-----------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGF 229 (285)
T ss_pred cCccccccccccc-----------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhh
Confidence 4433332221100 000011122335666 89999998887
Q ss_pred ---------HHHHHh--CCCeeCCeEEEEEEeecCccccc
Q psy2204 173 ---------QAIAGL--NGMQLGDKKLIVQRASVGAKNAS 201 (231)
Q Consensus 173 ---------~Ai~~l--nG~~i~gr~l~V~~a~~~~~~~~ 201 (231)
.+...| +...+.++.+++.+..+......
T Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (285)
T KOG4210|consen 230 AYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPKSDG 269 (285)
T ss_pred hhhhhhhchhHHHHhhcccCcccCcccccccCCCCccccc
Confidence 222223 47788899999998877655443
No 113
>KOG1855|consensus
Probab=97.25 E-value=0.0002 Score=63.49 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=52.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-------------------CcEEEEEecCH
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-------------------KNFAFLEFRSI 103 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-------------------kg~aFV~F~~~ 103 (231)
+-++|+|.+-|||.+-.-+.|.++|+.+| .|..|+|++. +-||||+|...
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G-----------~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~ 296 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVG-----------SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEV 296 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhccc-----------ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhh
Confidence 35789999999999999999999999999 6666666654 56999999999
Q ss_pred HHHHHHHHhCC
Q psy2204 104 DETTQAMAFDG 114 (231)
Q Consensus 104 ~~a~~Al~lng 114 (231)
+.|.+|-++.+
T Consensus 297 ~~A~KA~e~~~ 307 (484)
T KOG1855|consen 297 EAARKARELLN 307 (484)
T ss_pred HHHHHHHHhhc
Confidence 99999994443
No 114
>KOG0125|consensus
Probab=97.13 E-value=0.0008 Score=57.91 Aligned_cols=45 Identities=22% Similarity=0.452 Sum_probs=39.4
Q ss_pred CCCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 154 PDSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.+.+++|+|.|||+...|. +|.++|||..+.||+|.|+.|+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4567899999999987775 9999999999999999999998
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
.+..
T Consensus 173 arV~ 176 (376)
T KOG0125|consen 173 ARVH 176 (376)
T ss_pred hhhc
Confidence 6643
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.10 E-value=0.0019 Score=46.84 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=49.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeE-------------ecCCCcEEEEEecCHHHHHHHHHh
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQ-------------INLDKNFAFLEFRSIDETTQAMAF 112 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~-------------~~~~kg~aFV~F~~~~~a~~Al~l 112 (231)
.+-|.|=+.|+. ....+.+.|++|| .|++.. .....++-.|+|.+..+|.+||..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G-----------~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFG-----------TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS------------EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcc-----------eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 445667677777 5577888999999 555543 344578999999999999999999
Q ss_pred CCCeecCceE-EEeCC
Q psy2204 113 DGINFKGQSL-KIRRP 127 (231)
Q Consensus 113 ng~~l~gr~i-~V~~~ 127 (231)
||..|.|.-+ -|.+.
T Consensus 74 NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp TTEEETTCEEEEEEE-
T ss_pred CCeEEcCcEEEEEEEc
Confidence 9999998654 34433
No 116
>KOG4210|consensus
Probab=97.09 E-value=0.00031 Score=60.50 Aligned_cols=75 Identities=19% Similarity=0.407 Sum_probs=61.3
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 45 QARRLY-VGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 45 ~~r~lf-VgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
.+.++| |+||++++++++|+.+|..+| .|..+++. ..+||+||.|.+..+...++......+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~-----------~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~ 251 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSG-----------EITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSI 251 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcC-----------cceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcc
Confidence 345566 999999999999999999998 56665553 337999999999999999993388889
Q ss_pred cCceEEEeCCCCC
Q psy2204 118 KGQSLKIRRPHDY 130 (231)
Q Consensus 118 ~gr~i~V~~~~~~ 130 (231)
.++++.+.+....
T Consensus 252 ~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 252 GGRPLRLEEDEPR 264 (285)
T ss_pred cCcccccccCCCC
Confidence 9999999876643
No 117
>KOG1365|consensus
Probab=97.08 E-value=0.001 Score=58.34 Aligned_cols=78 Identities=12% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
....|-+++||+..+.++|.+||..|-....+- |-.++-..-++..|-|||+|.+.++|..|. ..+.+..++|.|+
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~---gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQ---GVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccc---eeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 356888999999999999999999997433220 001111112455799999999999999999 8888888899998
Q ss_pred Ee
Q psy2204 124 IR 125 (231)
Q Consensus 124 V~ 125 (231)
|-
T Consensus 356 vf 357 (508)
T KOG1365|consen 356 VF 357 (508)
T ss_pred Ee
Confidence 86
No 118
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.08 E-value=0.0007 Score=44.72 Aligned_cols=30 Identities=30% Similarity=0.717 Sum_probs=27.3
Q ss_pred EEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEE
Q psy2204 160 IFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLI 189 (231)
Q Consensus 160 ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~ 189 (231)
|||+|||.++|++ +|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999998 88888999999999886
No 119
>KOG0121|consensus
Probab=97.06 E-value=0.00043 Score=51.94 Aligned_cols=39 Identities=21% Similarity=0.509 Sum_probs=36.1
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.+.+|||+||++.++|| .|+.-+||+.+..|.|++.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45899999999999999 8999999999999999999863
No 120
>PLN03213 repressor of silencing 3; Provisional
Probab=97.04 E-value=0.00074 Score=61.09 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=36.7
Q ss_pred CCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 157 PHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
..+||||||++.++++ +||..|||.++.||.|+|..|.+.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4689999999999999 899999999999999999998643
No 121
>KOG2416|consensus
Probab=97.03 E-value=0.00087 Score=61.75 Aligned_cols=81 Identities=12% Similarity=0.173 Sum_probs=66.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 38 ~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.++...+.++.|||.||-.-.|.-+|+.++..-|. .|.+..|.+-|..|||.|.+.++|.... +|||..
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg----------~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGG----------NVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccC----------chHHHHHHHhhcceeEecccHHHHHHHHHHHhccc
Confidence 34556678899999999999999999999995442 5666677777899999999999999999 999998
Q ss_pred ec---CceEEEeCCC
Q psy2204 117 FK---GQSLKIRRPH 128 (231)
Q Consensus 117 l~---gr~i~V~~~~ 128 (231)
+. .+.|.+.|..
T Consensus 506 WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 506 WPPSNPKHLIADFVR 520 (718)
T ss_pred cCCCCCceeEeeecc
Confidence 83 5667776543
No 122
>KOG3152|consensus
Probab=97.02 E-value=0.00039 Score=57.85 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeee-Ee--cCC--C--cEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC-QI--NLD--K--NFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~-~~--~~~--k--g~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
..--||+++||+.+...-|+++|+.||.|-.+.+.++..-... +. +.+ + .-|+|+|.+...|..+- .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4456999999999999999999999996554433322111000 00 011 1 24789999999999988 999999
Q ss_pred ecCce
Q psy2204 117 FKGQS 121 (231)
Q Consensus 117 l~gr~ 121 (231)
+.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 123
>KOG0129|consensus
Probab=96.84 E-value=0.0027 Score=57.69 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=53.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHH-HhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhC
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFN-QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFD 113 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~-~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~ln 113 (231)
....-++.||||||+||.-++-++|..+|+ -||.|+-+.+ =.|-++...||-|=|+|.+..+-.+||+..
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI-----DtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI-----DTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe-----ccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 344557889999999999999999999999 7995544320 112244556899999999999999999443
No 124
>KOG4849|consensus
Probab=96.82 E-value=0.0029 Score=55.05 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=56.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
..-.+|||||-|++|++||.+.+...|-. .+.++++ +.+||||+|..-+..++++.+ .|-.+.+
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~---------~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLA---------QFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHH---------HHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 34569999999999999999988877722 2333333 456899999999999999999 8888999
Q ss_pred cCceEEE
Q psy2204 118 KGQSLKI 124 (231)
Q Consensus 118 ~gr~i~V 124 (231)
+|..=.|
T Consensus 150 HGQ~P~V 156 (498)
T KOG4849|consen 150 HGQSPTV 156 (498)
T ss_pred cCCCCee
Confidence 9875444
No 125
>KOG0108|consensus
Probab=96.77 E-value=0.0016 Score=59.12 Aligned_cols=39 Identities=36% Similarity=0.565 Sum_probs=36.7
Q ss_pred CcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 158 HKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 158 ~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+.|||||+|+++++| .|++.|||.++.||+|+|.|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999 999999999999999999998744
No 126
>KOG0111|consensus
Probab=96.72 E-value=0.0013 Score=53.69 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=37.9
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++||||+|..++|+. .||..||+.++.||.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35899999999999988 8999999999999999999998
Q ss_pred cCc
Q psy2204 195 VGA 197 (231)
Q Consensus 195 ~~~ 197 (231)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 653
No 127
>KOG0107|consensus
Probab=96.63 E-value=0.0029 Score=49.99 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=37.0
Q ss_pred CCcEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 157 PHKIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
.++|||+||+..+++. +|+..|||..|.|..|+|+.++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4799999999999887 9999999999999999999987443
No 128
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.56 E-value=0.0066 Score=46.81 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEEEeCC
Q psy2204 62 EMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRP 127 (231)
Q Consensus 62 ~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~V~~~ 127 (231)
+|.+.|..|| .++-+++.. +.-+|+|.+.++|-+|+.++|..+.|+.|+|+..
T Consensus 52 ~ll~~~~~~G-----------evvLvRfv~--~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYG-----------EVVLVRFVG--DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS------------ECEEEEET--TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCC-----------ceEEEEEeC--CeEEEEECccHHHHHHHccCCcEECCEEEEEEeC
Confidence 6677788888 666667765 4678999999999999999999999999999843
No 129
>KOG4676|consensus
Probab=96.54 E-value=0.0026 Score=56.03 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEEEe
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~V~ 125 (231)
.-|-|.||.+.+|.++++.+|...|+|..+-+.+. +.++.+.-....|||.|.+..++..|--|-.+.|-++.|.|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~--~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPN--VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCC--CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 37889999999999999999999997766543321 333334334689999999999999999888888888887775
No 130
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.51 E-value=0.004 Score=52.58 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCcEEEcCCCCCCCHH--------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED--------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee--------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||+.+|++ .|+ .|||..|.||.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 4799999999999998 777 5999999999999999863
No 131
>KOG2202|consensus
Probab=96.47 E-value=0.0021 Score=53.67 Aligned_cols=56 Identities=9% Similarity=0.258 Sum_probs=42.8
Q ss_pred HHHHHHHH-HhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCCCeecCceEEEeCC
Q psy2204 61 DEMMEFFN-QQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRP 127 (231)
Q Consensus 61 ~~L~~~F~-~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~~ 127 (231)
+++...|+ +||. |+.++++.+ +|-+||.|..+++|++|+ .||+..+.|++|...+.
T Consensus 83 Ed~f~E~~~kygE-----------iee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGE-----------IEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhh-----------hhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34555555 7774 444444433 688999999999999999 99999999999987754
No 132
>KOG0114|consensus
Probab=96.32 E-value=0.0058 Score=44.33 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=36.1
Q ss_pred CCCCcEEEcCCCCCCCHH--------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 155 DSPHKIFIGGLPNYLNED--------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee--------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
...+-|||+|||+++|.| +|+..|+|..+.++.|.|-.-.+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345779999999999998 99999999999999999987553
No 133
>KOG2314|consensus
Probab=96.16 E-value=0.0091 Score=54.98 Aligned_cols=71 Identities=14% Similarity=0.292 Sum_probs=53.2
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHHHhhhhhhccccCCCCeeeeEec-----CCCcEEEEEecCHHHHHHHH-H
Q psy2204 44 RQARRLYVGNIPFGV------TEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-----LDKNFAFLEFRSIDETTQAM-A 111 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~------te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-----~~kg~aFV~F~~~~~a~~Al-~ 111 (231)
.-...|+|-|+|--- -..-|.++|+++| +++...+. ..+||.|++|.+..+|..|+ .
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g-----------k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG-----------KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhc-----------cccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 444678899998521 1234678899999 55555553 34899999999999999999 9
Q ss_pred hCCCeec-CceEEEe
Q psy2204 112 FDGINFK-GQSLKIR 125 (231)
Q Consensus 112 lng~~l~-gr~i~V~ 125 (231)
+||+.|+ ...+.|+
T Consensus 125 l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 125 LNGKRLDKNHTFFVR 139 (698)
T ss_pred cccceecccceEEee
Confidence 9999996 4556665
No 134
>KOG0226|consensus
Probab=96.13 E-value=0.0089 Score=49.94 Aligned_cols=130 Identities=16% Similarity=0.248 Sum_probs=84.4
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 47 RRLYVGNIPFGVTEDE-M--MEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 47 r~lfVgNLp~~~te~~-L--~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
..+|++|+-..+..+- | ...|+.|=..... +++..+-..-++++|+.|.......++- +-+++.+.-+.+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~kt------k~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~V 170 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKT------KLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPV 170 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhh------hhhhcCCCccCcccccCcchhhhhhhhccccccccccCcce
Confidence 4566777766665554 3 5556554311111 2222222333699999999988888888 777777776666
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH------------------------------
Q psy2204 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------------ 172 (231)
Q Consensus 123 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------------ 172 (231)
++.....-... .. .+. .+.--+||.|.|..+++++
T Consensus 171 R~a~gtswedP-sl-------------~ew-~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgyg 235 (290)
T KOG0226|consen 171 RLAAGTSWEDP-SL-------------AEW-DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYG 235 (290)
T ss_pred eeccccccCCc-cc-------------ccC-ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccce
Confidence 65543321111 00 011 1222589999999999999
Q ss_pred -----------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 173 -----------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 173 -----------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
.|+.+|||..++.|.|+++.+....
T Consensus 236 fVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 236 FVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred eeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999999877553
No 135
>KOG0112|consensus
Probab=96.09 E-value=0.0093 Score=57.57 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=69.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 38 VGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 38 ~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
++.......+.+|+|+|..++....|...|..|| .|..+.+-+.--|+||.|++...+..|+ .|.|..
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fG-----------pir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFG-----------PIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHHHHHhhccC-----------cceeeecccCCcceeeecccCccchhhHHHHhcCc
Confidence 4433556678999999999999999999999999 8888888888899999999999999999 999999
Q ss_pred ecC--ceEEEeCCCC
Q psy2204 117 FKG--QSLKIRRPHD 129 (231)
Q Consensus 117 l~g--r~i~V~~~~~ 129 (231)
|.| +.|+|.++..
T Consensus 516 ~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASP 530 (975)
T ss_pred CCCCCcccccccccC
Confidence 986 5677776654
No 136
>KOG0126|consensus
Probab=96.03 E-value=0.0021 Score=51.12 Aligned_cols=37 Identities=38% Similarity=0.635 Sum_probs=33.5
Q ss_pred CcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 158 HKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 158 ~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
-=|||||||+++||. -|+..|||..|.||.|+|....
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 459999999999997 7899999999999999998653
No 137
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=95.92 E-value=0.012 Score=48.53 Aligned_cols=38 Identities=39% Similarity=0.671 Sum_probs=36.1
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.++|||+|||+++|++ .|+..|+|..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999 9999999999999999999975
No 138
>KOG2253|consensus
Probab=95.87 E-value=0.0079 Score=56.26 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
+.-++||||+...+..+-++.+...+|.| .+.+..+ |||.+|....-...|+ .++...++|..+.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v-----------~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFV-----------PSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcc-----------hhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34599999999999999999999999943 3333322 9999999999999999 8888888888776
Q ss_pred Ee
Q psy2204 124 IR 125 (231)
Q Consensus 124 V~ 125 (231)
+.
T Consensus 105 ~~ 106 (668)
T KOG2253|consen 105 EN 106 (668)
T ss_pred cc
Confidence 65
No 139
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=95.72 E-value=0.017 Score=38.30 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=14.0
Q ss_pred EEEcCCCCCCCHHHHHHHhCC
Q psy2204 160 IFIGGLPNYLNEDQAIAGLNG 180 (231)
Q Consensus 160 ifV~nLp~~~tee~Ai~~lnG 180 (231)
|||+|||+.+++++....|..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~ 21 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR 21 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT
T ss_pred CEEeCCCCCCCHHHHHHHHHh
Confidence 789999999999854444444
No 140
>KOG0128|consensus
Probab=95.72 E-value=0.0051 Score=58.96 Aligned_cols=75 Identities=11% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
...|||.|+|+..|.++|+.+|+++|.+.++ .++..+-++.||.+||.|.++.++.+++ ..+...+.-+.+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~------~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v 809 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSL------RLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEV 809 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCcccc------chhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccc
Confidence 4579999999999999999999999965554 3445555777999999999999999999 88887777666666
Q ss_pred eC
Q psy2204 125 RR 126 (231)
Q Consensus 125 ~~ 126 (231)
..
T Consensus 810 ~v 811 (881)
T KOG0128|consen 810 QV 811 (881)
T ss_pred cc
Confidence 54
No 141
>smart00362 RRM_2 RNA recognition motif.
Probab=95.50 E-value=0.026 Score=36.45 Aligned_cols=18 Identities=50% Similarity=0.768 Sum_probs=12.6
Q ss_pred HHHHHhCCCeeCCeEEEE
Q psy2204 173 QAIAGLNGMQLGDKKLIV 190 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V 190 (231)
+|+..++|..+.|+.|+|
T Consensus 54 ~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 54 KAIEALNGTKLGGRPLRV 71 (72)
T ss_pred HHHHHhCCcEECCEEEee
Confidence 666777777777777665
No 142
>KOG4285|consensus
Probab=95.06 E-value=0.17 Score=43.49 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCce-EEEeCCCC
Q psy2204 53 NIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS-LKIRRPHD 129 (231)
Q Consensus 53 NLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~-i~V~~~~~ 129 (231)
+.++.- -.-|..+|++|| .|++.....+-.|-+|.|.+..+|.+||..||+.|.|.. |-|....+
T Consensus 204 GFppg~-~s~vL~~F~~cG-----------~Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 204 GFPPGQ-VSIVLNLFSRCG-----------EVVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ccCccc-hhHHHHHHHhhC-----------eeeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 555443 356778899999 788887887778999999999999999999999999864 45665443
No 143
>KOG1996|consensus
Probab=95.01 E-value=0.072 Score=45.52 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhhhccccCCCCeeeeE-ecCC-CcEEEEEecCHHHHHHHH-HhCCCeecCceEEEeCC
Q psy2204 61 DEMMEFFNQQMHLSGLAQAAGNPVLACQ-INLD-KNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRP 127 (231)
Q Consensus 61 ~~L~~~F~~~G~~~~~~~~~~~~i~~~~-~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~~ 127 (231)
+++++..++||++-.+. |..+- ...+ ----||+|+..++|.+|+ .|||..|.||.+...+.
T Consensus 301 de~keEceKyg~V~~vi------ifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVI------IFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEE------EEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46677888888544321 11110 0011 124699999999999999 99999999998776644
No 144
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=94.93 E-value=0.056 Score=35.00 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=12.1
Q ss_pred HHHHHhCCCeeCCeEEEEE
Q psy2204 173 QAIAGLNGMQLGDKKLIVQ 191 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~ 191 (231)
.|+..+++..+.|++|.|+
T Consensus 55 ~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 55 KALEALNGKELGGRPLRVE 73 (74)
T ss_pred HHHHHhCCCeECCeEEEEe
Confidence 5666666666666666654
No 145
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.70 E-value=0.21 Score=32.86 Aligned_cols=56 Identities=11% Similarity=0.238 Sum_probs=40.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
.+|+|.++. +++.++|+.+|..|.... ....+...-+ ..|=|.|.+.+.|.+|| .|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~--------~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEE--------GPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccC--------CCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 478999995 688899999999992100 2334444333 45788999999999998 53
No 146
>KOG0130|consensus
Probab=94.35 E-value=0.052 Score=41.32 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
.|+..|||..+.|..|.|.|+-..+.
T Consensus 129 ~A~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 129 AAIDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred HHHHhccchhhhCCceeEEEEEecCC
Confidence 89999999999999999999976544
No 147
>KOG4307|consensus
Probab=94.33 E-value=0.053 Score=51.31 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=58.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
........|||-.||..+++.++.++|...-.|..+. .+...-..+-++-|||+|..++.+.+|+ .-..+.+.-
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I-----~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~ 503 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI-----ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH 503 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhhee-----EeccCCcccccchhhheeccccccchhhhcccccccCc
Confidence 3445567999999999999999999999876333210 1111111223689999999988888888 666666677
Q ss_pred ceEEEeCC
Q psy2204 120 QSLKIRRP 127 (231)
Q Consensus 120 r~i~V~~~ 127 (231)
|.|+|.-.
T Consensus 504 r~irv~si 511 (944)
T KOG4307|consen 504 RIIRVDSI 511 (944)
T ss_pred eEEEeech
Confidence 88888733
No 148
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.22 E-value=0.25 Score=32.95 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 57 GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 57 ~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
.++-++++.-+.+|+ ..++...+ .|| ||.|.+..+|++|. ..+|..+.+-.+.+
T Consensus 11 ~~~v~d~K~~Lr~y~------------~~~I~~d~-tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR------------WDRIRDDR-TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC------------cceEEecC-CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567889999999995 55554332 355 99999999999999 99999888776654
No 149
>KOG2135|consensus
Probab=93.76 E-value=0.046 Score=49.44 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGV-TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~-te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~ 123 (231)
+.+.|-+--.++.. |..+|...|.+|| .|.++.+..+---|.|+|.+..+|-+|-...+..|++|.|+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG-----------~i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iK 439 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFG-----------EIENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIK 439 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcC-----------ccccccccCchhhheeeeeccccccchhccccceecCceeE
Confidence 33445555555555 6689999999999 77777777666779999999999999999999999999999
Q ss_pred EeCCCC
Q psy2204 124 IRRPHD 129 (231)
Q Consensus 124 V~~~~~ 129 (231)
|.|-++
T Consensus 440 l~whnp 445 (526)
T KOG2135|consen 440 LFWHNP 445 (526)
T ss_pred EEEecC
Confidence 997664
No 150
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.72 E-value=0.19 Score=40.54 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC--CCeecCceEEEeCCC
Q psy2204 59 TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD--GINFKGQSLKIRRPH 128 (231)
Q Consensus 59 te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln--g~~l~gr~i~V~~~~ 128 (231)
..+.|+++|..|+ .+......++-+=..|.|.+.++|.+|. .++ +..+.|..+++.+..
T Consensus 8 ~~~~l~~l~~~~~-----------~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYD-----------PPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT------------SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcC-----------CceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3478999999998 7777777777778899999999999999 988 999999999998774
No 151
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=93.55 E-value=0.11 Score=32.83 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=20.1
Q ss_pred HHHHHhCCCeeCCeEEEEEEe
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a 193 (231)
.|++.|||..+.|++|+|++|
T Consensus 36 ~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 36 KAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHHTTSEETTEEEEEEEE
T ss_pred HHHHHhCCCEECCcEEEEEEC
Confidence 899999999999999999986
No 152
>KOG0122|consensus
Probab=93.46 E-value=0.13 Score=42.95 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=38.2
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
+...+|-|.||+.+++++ +||..|||+-+..--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 345789999999999998 999999999999999999999
Q ss_pred ecC
Q psy2204 194 SVG 196 (231)
Q Consensus 194 ~~~ 196 (231)
.+.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 153
>KOG4676|consensus
Probab=93.20 E-value=0.024 Score=50.17 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=51.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe--cCCCcEEEEEecCHHHHHHHHHhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI--NLDKNFAFLEFRSIDETTQAMAFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~--~~~kg~aFV~F~~~~~a~~Al~lng~~l~ 118 (231)
-.|+++|++|...+...++.++|..+|.+ ....+ ....-||-++|..-.+...|+.++|.++.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev-----------~ya~~ask~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEV-----------SYAHTASKSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchh-----------hhhhhhccCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 34899999999999999999999999943 32222 33467888999999999999988888876
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=93.10 E-value=0.11 Score=36.41 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=25.2
Q ss_pred cEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 159 KIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 159 ~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
-|||.|||.+.+.. +|.+-|+|..+.|++|.|++..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVSGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEeCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 47899999988776 9999999999999999999884
No 155
>PLN03121 nucleic acid binding protein; Provisional
Probab=92.50 E-value=0.27 Score=41.10 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=33.4
Q ss_pred CCcEEEcCCCCCCCHH-------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 157 PHKIFIGGLPNYLNED-------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.++|||+||++.+|++ +....|||..|.|+.|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4799999999999998 4445899999999999999865
No 156
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.18 E-value=0.47 Score=32.17 Aligned_cols=61 Identities=21% Similarity=0.441 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEeC
Q psy2204 57 GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRR 126 (231)
Q Consensus 57 ~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~ 126 (231)
.++..+|..++...+.+..- .|-++++. ..|+||+-... .+..++ .|++..+.|++++|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~------~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGR------DIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GG------GEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHH------hEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 67888999999887644432 67777776 46889987654 778888 9999999999999874
No 157
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.16 E-value=0.07 Score=42.73 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHH-hhhhhhccccCCCCeeeeE--ecC----C--CcEEEEEecCHHHHHHHH-HhC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQ-QMHLSGLAQAAGNPVLACQ--INL----D--KNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~-~G~~~~~~~~~~~~i~~~~--~~~----~--kg~aFV~F~~~~~a~~Al-~ln 113 (231)
....+|-|++||+++|++++.+.++. ++... ....+. ... . -.-|||.|.+.+++..-. .++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~--------~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEW--------DWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE-----------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhccccc--------ceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 34568999999999999999885554 32100 001111 111 1 257999999999999988 999
Q ss_pred CCeecC
Q psy2204 114 GINFKG 119 (231)
Q Consensus 114 g~~l~g 119 (231)
|..|.+
T Consensus 77 g~~F~D 82 (176)
T PF03467_consen 77 GHVFVD 82 (176)
T ss_dssp TEEEE-
T ss_pred CcEEEC
Confidence 998854
No 158
>KOG2068|consensus
Probab=91.93 E-value=0.042 Score=47.67 Aligned_cols=71 Identities=18% Similarity=0.406 Sum_probs=53.1
Q ss_pred CeEEEcCCCCCCCHHHH---HHHHHHhhhhhhccccCCCCeeeeEecCC---------CcEEEEEecCHHHHHHHH-HhC
Q psy2204 47 RRLYVGNIPFGVTEDEM---MEFFNQQMHLSGLAQAAGNPVLACQINLD---------KNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L---~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---------kg~aFV~F~~~~~a~~Al-~ln 113 (231)
+-+||-+|+.....+++ .++|.+||++.++ ...+. ---+||+|+..++|..|| ..+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki-----------~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~ 146 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKI-----------VKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD 146 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEE-----------eecCCcccccCCCCCCcccccccchHhhhhHHHHhh
Confidence 56888899987755544 5688888855433 22221 134899999999999999 999
Q ss_pred CCeecCceEEEeCCC
Q psy2204 114 GINFKGQSLKIRRPH 128 (231)
Q Consensus 114 g~~l~gr~i~V~~~~ 128 (231)
|..++|+.|+..+..
T Consensus 147 g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 147 GFVDDGRALKASLGT 161 (327)
T ss_pred hHHhhhhhhHHhhCC
Confidence 999999987776543
No 159
>KOG4207|consensus
Probab=91.93 E-value=0.17 Score=41.29 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.6
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
+|++.|+|..++|+.|+|++|.-+..
T Consensus 70 dA~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 70 DALDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred HHHHhhcceeeccceeeehhhhcCCC
Confidence 99999999999999999999986643
No 160
>KOG0149|consensus
Probab=91.92 E-value=0.21 Score=41.38 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
-+|||||+|+++++.| +||+.-| -.|+||+-.|++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 4699999999999998 4444333 468999999999998
Q ss_pred Cccccc
Q psy2204 196 GAKNAS 201 (231)
Q Consensus 196 ~~~~~~ 201 (231)
+++...
T Consensus 91 g~~pR~ 96 (247)
T KOG0149|consen 91 GGKPRP 96 (247)
T ss_pred cCccCC
Confidence 766444
No 161
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.78 E-value=0.32 Score=33.94 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=37.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
-||-=-.|..+...||.++|+.|| .|.---+. ...|||...+.+.+..++ .++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG-----------~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFG-----------QIYVSWIN--DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCC-----------CEEEEEEC--TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCC-----------cEEEEEEc--CCcEEEEeecHHHHHHHHHHhc
Confidence 344334999999999999999999 44333332 468999999999999998 665
No 162
>KOG2318|consensus
Probab=91.75 E-value=1.1 Score=41.93 Aligned_cols=84 Identities=25% Similarity=0.467 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---------------------
Q psy2204 35 VPVVGSTITRQARRLYVGNIPFG-VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD--------------------- 92 (231)
Q Consensus 35 ~~~~~~~~~~~~r~lfVgNLp~~-~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~--------------------- 92 (231)
.|...+.....+++|-|-|+.|+ +.-.+|.-+|+.|.. .|..|++|.|..+
T Consensus 163 ~pE~~~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP-------~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~ 235 (650)
T KOG2318|consen 163 DPEENPVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLP-------KGGSILSVKIYPSEFGKERMKEEEVHGPPKELFK 235 (650)
T ss_pred CcccccccccccceeeEeccccccccHHHHHHHHHhhcC-------CCCceeEEEechhhhhHHHhhhhcccCChhhhcc
Confidence 44445566778899999999995 588899999998852 2235666665432
Q ss_pred --------------------------------CcEEEEEecCHHHHHHHH-HhCCCeecCc--eEEEe
Q psy2204 93 --------------------------------KNFAFLEFRSIDETTQAM-AFDGINFKGQ--SLKIR 125 (231)
Q Consensus 93 --------------------------------kg~aFV~F~~~~~a~~Al-~lng~~l~gr--~i~V~ 125 (231)
.=||.|+|.+.+.|.+.. ..+|.+|... .|-++
T Consensus 236 ~~e~~~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 236 PVEEYKESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred ccccCcccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 028999999999999999 9999999743 44444
No 163
>KOG0132|consensus
Probab=91.60 E-value=0.19 Score=48.28 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=38.6
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeecCcccc
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASVGAKNA 200 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~~~ 200 (231)
++|||||.|+..+++. +|+.+|+...+.++.|+|.||...+-..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 4799999999999998 9999999999999999999997554433
No 164
>KOG0113|consensus
Probab=91.51 E-value=0.45 Score=40.89 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
.+.-+||||+-|+++++|. .|.+..+|..|.|+.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4566899999999999998 89999999999999999987
Q ss_pred ee
Q psy2204 193 AS 194 (231)
Q Consensus 193 a~ 194 (231)
..
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 65
No 165
>KOG2591|consensus
Probab=91.33 E-value=0.29 Score=45.39 Aligned_cols=69 Identities=17% Similarity=0.378 Sum_probs=51.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh--CCCeecCce
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF--DGINFKGQS 121 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l--ng~~l~gr~ 121 (231)
...-|.++-||..+-.|+++.+|+.- .+-+++++.+..+.++ ||+|++..||..|. .| .-++|-|++
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~e---------ncPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGE---------NCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccC---------CCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 33457789999999999999999841 1227888888887776 99999999999986 32 233556665
Q ss_pred EE
Q psy2204 122 LK 123 (231)
Q Consensus 122 i~ 123 (231)
|.
T Consensus 244 Im 245 (684)
T KOG2591|consen 244 IM 245 (684)
T ss_pred hh
Confidence 54
No 166
>KOG4574|consensus
Probab=91.12 E-value=0.16 Score=49.08 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec--CceEEEe
Q psy2204 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK--GQSLKIR 125 (231)
Q Consensus 49 lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~--gr~i~V~ 125 (231)
.++-|..-+.+...|..+|++|| .+.+.++.++-..|.|+|.+.+.|..|+ +++|+++. |-+.+|.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg-----------~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYG-----------SVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhc-----------chhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 33445555788899999999999 7888889899999999999999999999 99999874 6677777
Q ss_pred CCCC
Q psy2204 126 RPHD 129 (231)
Q Consensus 126 ~~~~ 129 (231)
+++.
T Consensus 370 ~ak~ 373 (1007)
T KOG4574|consen 370 FAKT 373 (1007)
T ss_pred eccc
Confidence 6653
No 167
>KOG0151|consensus
Probab=90.77 E-value=0.64 Score=44.40 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=52.0
Q ss_pred CCcEEEcCCCCCCCHH--------------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 157 PHKIFIGGLPNYLNED--------------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee--------------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
.+++||+||+..++++ .|+..|+|..+.+..+++-|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 4689999999999999 89999999999999999999
Q ss_pred eecCccccc-------CCCCccccccCCcccCCCCCCCccccCC
Q psy2204 193 ASVGAKNAS-------GQQAPVQIQVPGLTQVGQAGPATECPVP 229 (231)
Q Consensus 193 a~~~~~~~~-------~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 229 (231)
+..-.-.+. .....-..+--+|-....+++++.+|++
T Consensus 254 gk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~p~~~~pn~ 297 (877)
T KOG0151|consen 254 GKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPGPPKSLPNQ 297 (877)
T ss_pred ccccccCCccccCCChhhhccCCCCccCCcccCCCCccccCCCc
Confidence 853322111 1111222334455666777777777764
No 168
>KOG0115|consensus
Probab=90.61 E-value=0.29 Score=41.11 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=47.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-cCCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-~~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
..|||.||...++.+.|..-|+.||.+... |..++. .+..+-++|+|...-.+.+|+ ..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~a-------v~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERA-------VAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchh-------eeeecccccccccchhhhhcchhHHHHHHHh
Confidence 689999999999999999999999965543 222222 344678999999999999998 44
No 169
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.58 E-value=2.6 Score=31.00 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=46.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC----CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~----kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
.+.+..+.+...|+.++.++|..+.+.+- +.|..+++.++ +=.+.+.|.+.++|..-. .+||+.|
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~----------~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFR----------EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhccc----------ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34455566666666667677765555543 14666666555 335889999999999998 9999988
Q ss_pred cC
Q psy2204 118 KG 119 (231)
Q Consensus 118 ~g 119 (231)
..
T Consensus 80 ns 81 (110)
T PF07576_consen 80 NS 81 (110)
T ss_pred CC
Confidence 64
No 170
>smart00360 RRM RNA recognition motif.
Probab=89.28 E-value=0.46 Score=30.08 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=16.8
Q ss_pred HHHHHhCCCeeCCeEEEEE
Q psy2204 173 QAIAGLNGMQLGDKKLIVQ 191 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~ 191 (231)
.|+..|+|..+.|+.|+|+
T Consensus 53 ~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 53 KALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHcCCCeeCCcEEEeC
Confidence 8889999999999999874
No 171
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.51 E-value=1.3 Score=31.34 Aligned_cols=78 Identities=12% Similarity=0.230 Sum_probs=45.8
Q ss_pred EEEEecCHHHHHHHHHh--CCCeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHHH
Q psy2204 96 AFLEFRSIDETTQAMAF--DGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173 (231)
Q Consensus 96 aFV~F~~~~~a~~Al~l--ng~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee~ 173 (231)
|.|+|.+..-|.+.+.+ +...+.+..+.|.-.- +.... . ....-...-+.++|.|.|||..+++|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P-~~~~~-~----------~k~qv~~~vs~rtVlvsgip~~l~ee~ 68 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSP-VTLGH-L----------QKFQVFSGVSKRTVLVSGIPDVLDEEE 68 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEe-EecCC-c----------eEEEEEEcccCCEEEEeCCCCCCChhh
Confidence 68999999999999844 4445566666665211 10000 0 000001123568999999999887763
Q ss_pred HHHHhCCCeeCCeEEEEEEeec
Q psy2204 174 AIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 174 Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
-. ..|.+.|.++
T Consensus 69 l~----------D~LeIhFqK~ 80 (88)
T PF07292_consen 69 LR----------DKLEIHFQKP 80 (88)
T ss_pred he----------eeEEEEEecC
Confidence 21 4566666553
No 172
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.38 E-value=2.8 Score=32.39 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=53.3
Q ss_pred CCCCCeEEEcCCCCCCC-HHHHH---HHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 43 TRQARRLYVGNIPFGVT-EDEMM---EFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~t-e~~L~---~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
+.+..+|.|.=|..++. .+||+ ..++.|| +|.++..+- +-.|.|.|++..+|=+|+ ++.. ..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG-----------pI~SVT~cG-rqsavVvF~d~~SAC~Av~Af~s-~~ 149 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG-----------PIQSVTLCG-RQSAVVVFKDITSACKAVSAFQS-RA 149 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcC-----------CcceeeecC-CceEEEEehhhHHHHHHHHhhcC-CC
Confidence 34556888887776662 34444 4456788 777776643 678999999999999999 7765 66
Q ss_pred cCceEEEeCCCC
Q psy2204 118 KGQSLKIRRPHD 129 (231)
Q Consensus 118 ~gr~i~V~~~~~ 129 (231)
.|..+.+.+-..
T Consensus 150 pgtm~qCsWqqr 161 (166)
T PF15023_consen 150 PGTMFQCSWQQR 161 (166)
T ss_pred CCceEEeecccc
Confidence 777778776543
No 173
>KOG0533|consensus
Probab=84.79 E-value=1.7 Score=36.59 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=35.9
Q ss_pred CCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 156 SPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.+.+|+|.|||+.++++ .|++.+||..+.|+.+++.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 34789999999999988 89999999999999999987764
Q ss_pred C
Q psy2204 196 G 196 (231)
Q Consensus 196 ~ 196 (231)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 4
No 174
>KOG0153|consensus
Probab=83.55 E-value=4.8 Score=35.45 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=35.5
Q ss_pred CCCCCcEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 154 PDSPHKIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
...-.+|||++|-..+++. .|-+.+|...|.|++|+|.|..+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3345799999998788776 67788898899999999999987
No 175
>smart00361 RRM_1 RNA recognition motif.
Probab=81.96 E-value=1.4 Score=29.27 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.6
Q ss_pred HHHHHhCCCeeCCeEEEEE
Q psy2204 173 QAIAGLNGMQLGDKKLIVQ 191 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~ 191 (231)
+|+..|||..+.||.|+++
T Consensus 52 ~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 52 RAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHhCCCEECCEEEEeC
Confidence 9999999999999999873
No 176
>KOG4410|consensus
Probab=81.92 E-value=2.5 Score=36.22 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=38.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCH
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~ 103 (231)
.-||++||+.++.-.||+..+.+.+. .-.++...-+.|-||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~----------~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKREC----------TPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCC----------CceeEeeecCCcceeEecCCc
Confidence 45999999999999999999998761 345666667789999999864
No 177
>KOG0804|consensus
Probab=80.97 E-value=6.5 Score=35.85 Aligned_cols=64 Identities=17% Similarity=0.382 Sum_probs=53.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC----CcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~----kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
++.|+|--+|-.++-.||..|...+-. .|.++++.++ +=...|.|.+.++|..-. ++||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~----------~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIK----------QISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhh----------hhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 788999999999999999999887652 5666666554 235899999999999999 999998865
No 178
>KOG4660|consensus
Probab=80.85 E-value=1.4 Score=40.81 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=31.5
Q ss_pred CCCcEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEE
Q psy2204 156 SPHKIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLI 189 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~ 189 (231)
..++|+|-|||.+++++ .|+++||+.+|.|++|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34789999999999998 99999999999999998
No 179
>KOG4661|consensus
Probab=60.28 E-value=7.6 Score=36.57 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHHHHhCCCeeCCeEEEEEEee
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
++|..|+.++|.||.|.|.++.
T Consensus 462 kCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 462 KCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred HHHHHhhhhhhcceeeeeeecc
Confidence 9999999999999999999885
No 180
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=59.11 E-value=13 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=12.9
Q ss_pred CcEEEcCCCCCCCHH
Q psy2204 158 HKIFIGGLPNYLNED 172 (231)
Q Consensus 158 ~~ifV~nLp~~~tee 172 (231)
+||-|+|||...|.+
T Consensus 2 TTvMirNIPn~~t~~ 16 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQE 16 (97)
T ss_pred eeEEEecCCCCCCHH
Confidence 578899999999888
No 181
>KOG4483|consensus
Probab=58.46 E-value=45 Score=30.19 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=46.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFD 113 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~ln 113 (231)
++-..-|=|-++|.....+||...|+.|+. .=.+++... .-.+|-.|.+...|..||.+.
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~----------kgfdIkWvD-dthalaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQN----------KGFDIKWVD-DTHALAVFSSVNRAAEALTLK 447 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhc----------CCceeEEee-cceeEEeecchHHHHHHhhcc
Confidence 345567889999999999999999999972 222333332 468999999999999999663
No 182
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=56.08 E-value=9 Score=25.74 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHhCCCeeCCeEEEEEEe
Q psy2204 164 GLPNYLNEDQAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 164 nLp~~~tee~Ai~~lnG~~i~gr~l~V~~a 193 (231)
.+|.+. .++++..|++..+.|++|+|+.|
T Consensus 46 ev~~~~-a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 46 EVPEEV-AEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EECHHH-HHHHHHHhcCCCCCCeeEEEEEC
Confidence 445543 44999999999999999999876
No 183
>KOG4019|consensus
Probab=52.12 E-value=18 Score=29.04 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc-
Q psy2204 44 RQARRLYVGNIPFGV-TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ- 120 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~-te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr- 120 (231)
+-..++++.+++.++ ++.+.+..|+.-.. .+. +..-.++.+..+..-|-|.+.+.+..|. .+++..|.|.
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFr--q~n-----~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFR--QIN-----EDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHh--hhC-----cchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 334567888888755 33333444433211 000 4444555666778888999999999998 9999999998
Q ss_pred eEEEeCCCC
Q psy2204 121 SLKIRRPHD 129 (231)
Q Consensus 121 ~i~V~~~~~ 129 (231)
.++..++..
T Consensus 81 ~~k~yfaQ~ 89 (193)
T KOG4019|consen 81 ELKLYFAQP 89 (193)
T ss_pred eEEEEEccC
Confidence 676665543
No 184
>KOG4209|consensus
Probab=51.73 E-value=15 Score=30.66 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.7
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.++. |||..|.|+.|.|.+....
T Consensus 158 ~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 158 EAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred HHhh-cCCcccccccceeeeeeee
Confidence 7788 9999999999999987544
No 185
>KOG3152|consensus
Probab=48.27 E-value=19 Score=30.56 Aligned_cols=15 Identities=13% Similarity=0.614 Sum_probs=12.7
Q ss_pred CcEEEcCCCCCCCHH
Q psy2204 158 HKIFIGGLPNYLNED 172 (231)
Q Consensus 158 ~~ifV~nLp~~~tee 172 (231)
--||+++||+.++..
T Consensus 75 GVvylS~IPp~m~~~ 89 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPV 89 (278)
T ss_pred eEEEeccCCCccCHH
Confidence 468999999998887
No 186
>KOG4454|consensus
Probab=44.58 E-value=4 Score=33.78 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=56.9
Q ss_pred CCCCCeEEEcC----CCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 43 TRQARRLYVGN----IPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 43 ~~~~r~lfVgN----Lp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
....++++.|| |...++++.+...|+..|.+... .+....-++++.++|+++.-......++ .+.+..+
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~------R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGV------RIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCc------cccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 34457888999 88899999999999998833322 1222222556899999999999999999 8888877
Q ss_pred cCceEEEe
Q psy2204 118 KGQSLKIR 125 (231)
Q Consensus 118 ~gr~i~V~ 125 (231)
.-++..+.
T Consensus 151 ~~~~~~~g 158 (267)
T KOG4454|consen 151 FQKKVTIG 158 (267)
T ss_pred CCCCcccc
Confidence 76666555
No 187
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.04 E-value=79 Score=24.61 Aligned_cols=64 Identities=11% Similarity=0.342 Sum_probs=39.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhcc-----ccCCCCeeeeEecC--CC-cEEEEEecCHHHHH
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA-----QAAGNPVLACQINL--DK-NFAFLEFRSIDETT 107 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~-----~~~~~~i~~~~~~~--~k-g~aFV~F~~~~~a~ 107 (231)
.+..++|+.-++..+++++-++..++-+.+..+. .+-+.++-.+.... .+ .|-+|.|++-....
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 3447899999999999999999998765333111 11222333332221 13 38899999866544
No 188
>KOG4008|consensus
Probab=42.91 E-value=33 Score=28.77 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=29.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhh
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLS 74 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~ 74 (231)
.+....++||+-|+|..+|++.|..+.+.+|.+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 4455678999999999999999999999999554
No 189
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=41.98 E-value=29 Score=29.98 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCC-------------cEEEEEecCHHHHHH
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK-------------NFAFLEFRSIDETTQ 108 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k-------------g~aFV~F~~~~~a~~ 108 (231)
=.+|.|...|+..+++-..+...|.+|| +|+++.+..+. ....+.|-+.+.+-.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~-----------pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFG-----------PIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccC-----------ceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 3568899999999999889999999999 77777775543 678888888776543
No 190
>KOG2193|consensus
Probab=40.85 E-value=1.3 Score=39.87 Aligned_cols=74 Identities=15% Similarity=0.264 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
.+|.+-|.|+|+...++-|..+...||.+..+ ..+.+......--|+|.+.+.+..|| .+||..+....++
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~--------eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENC--------EQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHh--------hhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 45789999999999999999999999966543 22222222344457789999999999 9999999988888
Q ss_pred EeC
Q psy2204 124 IRR 126 (231)
Q Consensus 124 V~~ 126 (231)
+.+
T Consensus 151 ~~Y 153 (584)
T KOG2193|consen 151 VGY 153 (584)
T ss_pred ccc
Confidence 863
No 191
>KOG1546|consensus
Probab=39.20 E-value=1.7e+02 Score=25.86 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=52.2
Q ss_pred hhcCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhh-ccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH
Q psy2204 32 AAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG-LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM 110 (231)
Q Consensus 32 ~~~~~~~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~-~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al 110 (231)
+++.|..-+.+.+..|.|.|| +++--|..||+-..+..-.... +++--|....++.+..+.----+.-.+.....+||
T Consensus 50 pPq~~~~~~~~~gkrrAvLiG-INY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~Al 128 (362)
T KOG1546|consen 50 PPQPPYQYPQMAGKRRAVLIG-INYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRRAL 128 (362)
T ss_pred CCCCCCCCccccccceEEEEe-ecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHHHH
Confidence 334455556677777788886 8888888888755543221111 11111223334433333222233445666777888
Q ss_pred -HhCCCeecCceEEEeCC
Q psy2204 111 -AFDGINFKGQSLKIRRP 127 (231)
Q Consensus 111 -~lng~~l~gr~i~V~~~ 127 (231)
.|-..--.|..|.+.++
T Consensus 129 ~wLV~~aq~gD~LvfHYS 146 (362)
T KOG1546|consen 129 RWLVESAQPGDSLVFHYS 146 (362)
T ss_pred HHHHhcCCCCCEEEEEec
Confidence 66555555667777755
No 192
>KOG1995|consensus
Probab=39.05 E-value=14 Score=32.61 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.7
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.||.-+++..+.+..|+|.+|...
T Consensus 131 aai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 131 AAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred hhhhhhccccccCCCchhhhhhhc
Confidence 899999999999999999998754
No 193
>KOG0116|consensus
Probab=38.21 E-value=54 Score=30.01 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.7
Q ss_pred CcEEEcCCCCCCCHH
Q psy2204 158 HKIFIGGLPNYLNED 172 (231)
Q Consensus 158 ~~ifV~nLp~~~tee 172 (231)
.+|||+|||.+++.+
T Consensus 289 ~~i~V~nlP~da~~~ 303 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPA 303 (419)
T ss_pred cceEeecCCCCCCHH
Confidence 469999999999998
No 194
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=37.55 E-value=74 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=23.6
Q ss_pred CeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 83 PVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 83 ~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.|.++-...+ |||-|||=.+.+++..|+ .+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 5777655443 899999999999999999 666543
No 195
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.10 E-value=26 Score=24.69 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHH
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFN 68 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~ 68 (231)
..-..|+|-|.|||....+++|+|.++
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 445678999999999999999997654
No 196
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=36.79 E-value=61 Score=23.98 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC----CCcEEEEEecC-HHHHHHHHHhC
Q psy2204 58 VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL----DKNFAFLEFRS-IDETTQAMAFD 113 (231)
Q Consensus 58 ~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~----~kg~aFV~F~~-~~~a~~Al~ln 113 (231)
.+.++|++.|+.|. .+ .++... +.|++.|+|.+ -.-...|+.|.
T Consensus 29 ~~~~~l~~~l~~f~-----------p~-kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 29 MSNEELLDKLAEFN-----------PL-KVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp --SHHHHHHHHH--------------S-EEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC-----------Cc-eeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 35589999999986 32 233322 25899999984 44455566443
No 197
>KOG0415|consensus
Probab=34.44 E-value=52 Score=29.38 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.6
Q ss_pred HHHHHhCCCeeCCeEEEEEEee
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
+|.=+|++..|.+|+|+|.|+.
T Consensus 296 ~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 296 QAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred HHHhhhcceeeccceEEeehhh
Confidence 8999999999999999999875
No 198
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=33.39 E-value=58 Score=25.23 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
-|...|+|.++.|+.|+|+..++.
T Consensus 84 Laals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 84 LAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHccCCcEECCEEEEEEeCCcc
Confidence 566789999999999999988755
No 199
>KOG2295|consensus
Probab=31.95 E-value=7.1 Score=36.55 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
.+||+.|++++++-++|..+++.+-. +..+.+. ..+.+++|+|+---....|+ +||+..+..
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~-----------~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPG-----------FLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCch-----------heeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 56899999999999999999987642 2222221 11478899999888888888 999987754
Q ss_pred c
Q psy2204 120 Q 120 (231)
Q Consensus 120 r 120 (231)
.
T Consensus 301 ~ 301 (648)
T KOG2295|consen 301 N 301 (648)
T ss_pred c
Confidence 3
No 200
>KOG0156|consensus
Probab=31.89 E-value=1e+02 Score=28.80 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=45.1
Q ss_pred EEcCCCCCCC---HHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 50 YVGNIPFGVT---EDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 50 fVgNLp~~~t---e~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
+||||+.-.. ...+.++=++|| +|..++++. .-.|.-.+.+.|+.++.-++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yG-----------pi~tl~lG~---~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYG-----------PVFTLRLGS---VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhC-----------CeEEEEecC---ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 4888876433 345666666888 888888864 3478889999999999888999999985
No 201
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional
Probab=31.79 E-value=37 Score=31.15 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=43.1
Q ss_pred EcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEec---CHHHHHHHH--HhCCCeecC
Q psy2204 51 VGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR---SIDETTQAM--AFDGINFKG 119 (231)
Q Consensus 51 VgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~---~~~~a~~Al--~lng~~l~g 119 (231)
|..||...+.+.-.++++.||+-......-|..+..+...|..-++...|. +.++++.|| ++.|..-.|
T Consensus 210 L~~LP~eYd~g~Y~~FIe~YGTHYITsv~LGG~VE~vTs~RtC~~slps~~~GlS~~qVk~cLn~ELqgn~~~G 283 (524)
T PTZ00481 210 IDALPEDYQPDVYNEFLNAWGTHISVDTFIGGMIEKQTVFKDCVFFTPQFNGGLSPEQVEQALRNELNGNPAEG 283 (524)
T ss_pred HHhcchhcCHHHHHHHHHhcCceEEEEeeEcCEEEEEeehhhhhhhchhhhcCCCHHHHHHHHHHHhcCCCCcc
Confidence 678999999999999999999543222222333333333332222222343 888999999 888775444
No 202
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.79 E-value=1.7e+02 Score=19.30 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=22.4
Q ss_pred eeeeEecCC--CcEEEEEecCHHHHHHHH-Hh
Q psy2204 84 VLACQINLD--KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 84 i~~~~~~~~--kg~aFV~F~~~~~a~~Al-~l 112 (231)
+...++.-. .++.|+-+.+.+.+.++. .+
T Consensus 48 a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 48 ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 556666666 789999998999988877 44
No 203
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=29.34 E-value=24 Score=23.52 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=20.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHh
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQ 70 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~ 70 (231)
-...+|++|||.+|..+-.+.=..++...
T Consensus 23 Ls~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 23 LSLTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred HHHcCceEEECCCChHHHHcCcchHHHHH
Confidence 45678999999999877665545555443
No 204
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=28.42 E-value=46 Score=21.82 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhh
Q psy2204 61 DEMMEFFNQQMHL 73 (231)
Q Consensus 61 ~~L~~~F~~~G~~ 73 (231)
.+||++|+..|.|
T Consensus 9 ~~iR~~fs~lG~I 21 (62)
T PF15513_consen 9 AEIRQFFSQLGEI 21 (62)
T ss_pred HHHHHHHHhcCcE
Confidence 6899999999954
No 205
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.87 E-value=38 Score=19.64 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHhh
Q psy2204 57 GVTEDEMMEFFNQQM 71 (231)
Q Consensus 57 ~~te~~L~~~F~~~G 71 (231)
++++++|++.|.+..
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 789999999998653
No 206
>PF14893 PNMA: PNMA
Probab=27.45 E-value=54 Score=29.02 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHh
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQ 70 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~ 70 (231)
+..|.|.|.+||.++++++|.+.+...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHh
Confidence 345789999999999999999988753
No 207
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=27.15 E-value=62 Score=28.71 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.7
Q ss_pred HHHHHhCCCeeCCeEEEEEEee
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
++|.+.+|..++||.|+..+..
T Consensus 180 rcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 180 RCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred HHHHHhccccccCceEeeecCc
Confidence 8899999999999999998653
No 208
>KOG1996|consensus
Probab=24.84 E-value=87 Score=27.28 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.7
Q ss_pred HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
+|+-.|||+.|+||.++-.|.+.
T Consensus 344 KA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 344 KAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHhcCCceecceeeeheeccH
Confidence 88999999999999999888763
No 209
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.33 E-value=2.5e+02 Score=19.10 Aligned_cols=53 Identities=6% Similarity=0.034 Sum_probs=37.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC---CCcEEEEEecCHHHHHHH
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL---DKNFAFLEFRSIDETTQA 109 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~---~kg~aFV~F~~~~~a~~A 109 (231)
.-|+=.++.+.+..+|+..++....+ .+.++++.. +..=|||.+...++|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~V---------kV~~Vnt~~~~~~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDV---------KVEKVNTLITPRGEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC---------ceEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 34555578899999999999985422 466665533 234599999887777664
No 210
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=21.01 E-value=1.8e+02 Score=21.74 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=10.1
Q ss_pred CcEEEEEecCHHH
Q psy2204 93 KNFAFLEFRSIDE 105 (231)
Q Consensus 93 kg~aFV~F~~~~~ 105 (231)
-||-||.|.+++.
T Consensus 97 DGFLYi~Ys~e~t 109 (121)
T PTZ00380 97 DGFLYVSVRTEQA 109 (121)
T ss_pred CCeEEEEEccccc
Confidence 4899999987654
Done!