Query psy2204
Match_columns 231
No_of_seqs 193 out of 2085
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 18:53:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh0_A Splicing factor U2AF 65 100.0 9.8E-27 3.4E-31 186.9 20.2 155 44-199 2-197 (198)
2 2g4b_A Splicing factor U2AF 65 99.9 6.1E-26 2.1E-30 178.3 17.2 130 44-194 2-172 (172)
3 1fje_B Nucleolin RBD12, protei 99.9 1E-24 3.5E-29 172.1 15.7 131 41-196 8-174 (175)
4 4f02_A Polyadenylate-binding p 99.9 7.8E-25 2.7E-29 179.1 11.5 124 44-197 13-182 (213)
5 3md3_A Nuclear and cytoplasmic 99.9 1.2E-23 4E-28 163.8 14.0 118 47-194 1-165 (166)
6 1l3k_A Heterogeneous nuclear r 99.9 3.9E-23 1.3E-27 165.5 13.2 132 40-198 7-185 (196)
7 1b7f_A Protein (SXL-lethal pro 99.9 6.9E-23 2.3E-27 160.1 14.1 117 45-193 2-168 (168)
8 2adc_A Polypyrimidine tract-bi 99.9 2.5E-22 8.6E-27 165.9 18.1 142 44-196 32-228 (229)
9 1fxl_A Paraneoplastic encephal 99.9 5.7E-23 1.9E-27 160.0 13.4 117 45-193 1-167 (167)
10 4f25_A Polyadenylate-binding p 99.9 1.7E-23 5.8E-28 155.4 8.6 103 46-172 5-112 (115)
11 3pgw_A U1-A; protein-RNA compl 99.9 4E-22 1.4E-26 168.9 18.3 79 41-130 4-90 (282)
12 3tyt_A Heterogeneous nuclear r 99.9 2.6E-22 8.8E-27 163.6 14.9 138 45-193 3-204 (205)
13 2qfj_A FBP-interacting repress 99.9 3.3E-22 1.1E-26 162.4 15.2 131 45-196 27-205 (216)
14 1qm9_A Polypyrimidine tract-bi 99.9 5.5E-22 1.9E-26 159.6 14.7 141 45-196 2-197 (198)
15 3nmr_A Cugbp ELAV-like family 99.9 1.5E-22 5.2E-27 159.0 10.6 119 45-194 2-175 (175)
16 3smz_A Protein raver-1, ribonu 99.9 2.8E-21 9.6E-26 163.9 14.5 115 44-197 20-176 (284)
17 2cjk_A Nuclear polyadenylated 99.9 1.8E-22 6.2E-27 157.6 5.8 119 44-196 1-166 (167)
18 3sde_A Paraspeckle component 1 99.9 3E-21 1E-25 162.4 13.5 119 40-196 16-179 (261)
19 3smz_A Protein raver-1, ribonu 99.9 2E-21 6.9E-26 164.8 11.7 125 45-198 94-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 4E-21 1.4E-25 163.5 13.0 120 40-198 35-199 (292)
21 2ghp_A U4/U6 snRNA-associated 99.8 2E-20 7E-25 159.2 12.7 131 45-196 116-291 (292)
22 2hvz_A Splicing factor, argini 99.8 3.7E-20 1.3E-24 133.7 9.5 98 47-166 1-100 (101)
23 1sjq_A Polypyrimidine tract-bi 99.8 1.4E-19 4.9E-24 131.9 11.2 79 42-131 12-93 (105)
24 2la4_A Nuclear and cytoplasmic 99.8 1.5E-19 5.2E-24 130.5 11.1 75 44-129 25-100 (101)
25 2hzc_A Splicing factor U2AF 65 99.8 1.6E-19 5.4E-24 126.6 10.7 85 43-127 3-87 (87)
26 2wbr_A GW182, gawky, LD47780P; 99.8 2.3E-19 7.8E-24 125.9 10.6 73 45-128 6-79 (89)
27 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4.3E-24 131.0 8.7 77 42-129 15-98 (99)
28 3r27_A HnRNP L, heterogeneous 99.8 1.8E-19 6.1E-24 130.2 9.4 79 41-130 16-97 (100)
29 2lxi_A RNA-binding protein 10; 99.8 3.1E-19 1.1E-23 126.9 8.7 81 46-131 1-84 (91)
30 2lkz_A RNA-binding protein 5; 99.8 1.8E-19 6.3E-24 129.3 7.0 86 39-129 2-94 (95)
31 1x4d_A Matrin 3; structural ge 99.8 2.3E-19 7.9E-24 130.3 6.9 78 43-131 12-93 (102)
32 1why_A Hypothetical protein ri 99.8 1.4E-18 4.7E-23 124.6 10.9 81 40-131 11-94 (97)
33 2ytc_A PRE-mRNA-splicing facto 99.8 6.9E-19 2.3E-23 122.9 9.0 78 40-128 6-85 (85)
34 2err_A Ataxin-2-binding protei 99.8 5.2E-19 1.8E-23 129.8 8.6 88 32-130 15-107 (109)
35 1wex_A Hypothetical protein (r 99.8 9.9E-19 3.4E-23 127.5 9.9 79 42-131 11-92 (104)
36 2khc_A Testis-specific RNP-typ 99.8 5.2E-19 1.8E-23 131.2 8.4 78 40-128 34-118 (118)
37 1fj7_A Nucleolin RBD1, protein 99.8 1.8E-18 6.1E-23 124.8 11.0 84 43-132 14-97 (101)
38 2ad9_A Polypyrimidine tract-bi 99.8 7.9E-19 2.7E-23 130.9 9.1 81 40-131 25-108 (119)
39 1whw_A Hypothetical protein ri 99.8 2.8E-18 9.6E-23 123.3 11.7 81 41-132 3-90 (99)
40 2cq1_A PTB-like protein L; RRM 99.8 1.6E-18 5.5E-23 125.7 10.3 79 42-131 11-92 (101)
41 2dnq_A RNA-binding protein 4B; 99.8 2.3E-18 7.9E-23 121.7 10.7 78 41-131 3-81 (90)
42 2cpj_A Non-POU domain-containi 99.8 8.3E-19 2.8E-23 126.2 8.6 80 41-131 10-90 (99)
43 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.2E-18 2.1E-22 122.4 13.2 81 40-131 9-94 (103)
44 1x4g_A Nucleolysin TIAR; struc 99.8 4.8E-18 1.7E-22 124.4 12.6 77 44-131 23-100 (109)
45 2dgx_A KIAA0430 protein; RRM d 99.8 3.5E-18 1.2E-22 122.4 11.3 76 44-130 7-90 (96)
46 2cq3_A RNA-binding protein 9; 99.8 4.8E-18 1.6E-22 123.0 11.9 81 40-131 9-94 (103)
47 1x4c_A Splicing factor, argini 99.8 5.1E-18 1.7E-22 124.2 11.9 79 42-132 11-95 (108)
48 3s8s_A Histone-lysine N-methyl 99.8 1.4E-18 4.9E-23 127.9 8.8 75 44-129 4-85 (110)
49 3n9u_C Cleavage and polyadenyl 99.8 4.4E-19 1.5E-23 138.5 6.4 80 44-128 53-135 (156)
50 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.4E-18 8.2E-23 120.0 9.3 75 43-128 4-85 (85)
51 2cph_A RNA binding motif prote 99.8 5E-18 1.7E-22 123.5 11.4 80 41-131 10-98 (107)
52 1x4a_A Splicing factor, argini 99.8 5.3E-18 1.8E-22 124.1 11.5 81 40-131 16-100 (109)
53 2cqh_A IGF-II mRNA-binding pro 99.8 1.8E-18 6.1E-23 123.0 8.7 80 41-131 3-84 (93)
54 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-18 6.6E-23 122.4 8.5 81 40-131 2-87 (92)
55 1u6f_A Tcubp1, RNA-binding pro 99.8 5.6E-18 1.9E-22 129.1 11.6 83 40-133 36-125 (139)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.1E-18 1.4E-22 123.1 10.1 80 41-131 7-93 (102)
57 2dgs_A DAZ-associated protein 99.8 6.5E-18 2.2E-22 121.4 11.0 80 41-131 5-90 (99)
58 2cpf_A RNA binding motif prote 99.8 4.1E-18 1.4E-22 122.2 9.9 77 44-131 3-89 (98)
59 2xnq_A Nuclear polyadenylated 99.8 5.1E-18 1.7E-22 121.9 10.4 76 41-129 17-94 (97)
60 2jvo_A Nucleolar protein 3; nu 99.8 3.6E-18 1.2E-22 125.2 9.6 79 40-131 25-104 (108)
61 1x4h_A RNA-binding protein 28; 99.8 1.2E-17 4.2E-22 122.2 12.4 82 40-132 9-103 (111)
62 1x5s_A Cold-inducible RNA-bind 99.8 5.2E-18 1.8E-22 122.5 10.2 81 40-131 6-93 (102)
63 2x1f_A MRNA 3'-END-processing 99.8 5.2E-18 1.8E-22 121.3 10.1 75 45-130 1-82 (96)
64 2cpz_A CUG triplet repeat RNA- 99.8 4.8E-18 1.6E-22 125.5 10.2 81 40-131 19-106 (115)
65 2cpd_A Apobec-1 stimulating pr 99.8 2E-17 6.8E-22 118.9 13.1 80 39-131 8-90 (99)
66 2dgo_A Cytotoxic granule-assoc 99.8 9.1E-18 3.1E-22 123.9 11.6 83 40-133 9-98 (115)
67 1whx_A Hypothetical protein ri 99.8 1.8E-18 6.3E-23 127.3 7.6 77 43-130 7-84 (111)
68 4a8x_A RNA-binding protein wit 99.8 5.5E-18 1.9E-22 118.9 9.7 74 45-129 3-84 (88)
69 1x5t_A Splicing factor 3B subu 99.7 5.8E-18 2E-22 120.8 9.9 77 44-131 3-87 (96)
70 2dnh_A Bruno-like 5, RNA bindi 99.7 5.1E-18 1.8E-22 123.2 9.8 80 41-131 10-98 (105)
71 2do4_A Squamous cell carcinoma 99.7 7.3E-18 2.5E-22 121.4 10.4 82 39-131 10-97 (100)
72 2div_A TRNA selenocysteine ass 99.7 5.4E-18 1.8E-22 121.8 9.6 79 41-130 4-94 (99)
73 2dgu_A Heterogeneous nuclear r 99.7 2.3E-17 8E-22 119.5 13.1 79 41-132 6-85 (103)
74 3md1_A Nuclear and cytoplasmic 99.7 4E-18 1.4E-22 118.4 8.4 74 46-130 1-81 (83)
75 2ywk_A Putative RNA-binding pr 99.7 3.3E-18 1.1E-22 121.9 8.2 77 41-128 11-93 (95)
76 2dnz_A Probable RNA-binding pr 99.7 9.1E-18 3.1E-22 119.6 10.3 77 44-131 3-86 (95)
77 2e5h_A Zinc finger CCHC-type a 99.7 6.8E-18 2.3E-22 120.0 9.6 77 41-128 11-94 (94)
78 2cpx_A Hypothetical protein FL 99.7 1.2E-17 4.3E-22 123.1 11.3 85 42-131 21-106 (115)
79 1x4f_A Matrin 3; structural ge 99.7 8.1E-19 2.8E-23 129.4 4.8 78 43-131 22-103 (112)
80 2dnp_A RNA-binding protein 14; 99.7 2.1E-17 7.2E-22 116.7 12.0 77 42-131 5-82 (90)
81 2cpe_A RNA-binding protein EWS 99.7 1.3E-17 4.4E-22 122.7 11.3 90 40-132 9-105 (113)
82 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-17 4.8E-22 119.4 11.0 78 43-130 16-94 (97)
83 2dgp_A Bruno-like 4, RNA bindi 99.7 1.9E-17 6.5E-22 120.3 11.8 81 40-131 7-97 (106)
84 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.8E-18 1.3E-22 119.5 7.8 75 44-129 4-85 (87)
85 2cqc_A Arginine/serine-rich sp 99.7 7.5E-18 2.6E-22 119.9 9.3 78 41-129 10-94 (95)
86 2dis_A Unnamed protein product 99.7 2.7E-17 9.1E-22 120.2 12.5 78 43-131 5-93 (109)
87 2fy1_A RNA-binding motif prote 99.7 1.1E-17 3.8E-22 124.1 10.5 78 43-131 4-87 (116)
88 1x5u_A Splicing factor 3B subu 99.7 2.2E-17 7.4E-22 119.8 11.7 80 41-131 10-96 (105)
89 2dnm_A SRP46 splicing factor; 99.7 7.1E-18 2.4E-22 122.1 9.1 80 41-131 8-94 (103)
90 2dgt_A RNA-binding protein 30; 99.7 1.7E-17 5.7E-22 117.7 10.8 78 41-131 5-83 (92)
91 2m2b_A RNA-binding protein 10; 99.7 2.7E-18 9.1E-23 130.0 6.8 87 39-131 16-109 (131)
92 3p5t_L Cleavage and polyadenyl 99.7 7.7E-19 2.6E-23 124.3 3.3 79 47-130 2-83 (90)
93 2a3j_A U1 small nuclear ribonu 99.7 1.7E-17 5.8E-22 125.2 10.6 77 43-130 26-110 (127)
94 2do0_A HnRNP M, heterogeneous 99.7 1.8E-17 6.2E-22 122.0 10.5 80 41-131 10-95 (114)
95 2d9p_A Polyadenylate-binding p 99.7 7.4E-18 2.5E-22 122.0 8.2 80 42-132 11-95 (103)
96 2la6_A RNA-binding protein FUS 99.7 9.4E-18 3.2E-22 120.6 8.7 77 41-128 8-99 (99)
97 2cq2_A Hypothetical protein LO 99.7 1.4E-17 4.7E-22 123.0 9.7 75 44-129 23-105 (114)
98 3s7r_A Heterogeneous nuclear r 99.7 7.6E-18 2.6E-22 118.1 8.0 76 41-127 6-87 (87)
99 2jrs_A RNA-binding protein 39; 99.7 9.6E-18 3.3E-22 122.9 8.8 80 40-130 20-106 (108)
100 1oo0_B CG8781-PA, drosophila Y 99.7 1.1E-17 3.7E-22 122.5 9.1 79 41-130 21-106 (110)
101 1p27_B RNA-binding protein 8A; 99.7 6.3E-18 2.1E-22 122.9 7.7 78 42-130 19-103 (106)
102 2nlw_A Eukaryotic translation 99.7 1.8E-17 6.3E-22 120.6 10.0 79 42-131 11-101 (105)
103 1x5p_A Negative elongation fac 99.7 4.6E-17 1.6E-21 116.6 11.8 77 42-131 11-88 (97)
104 3ucg_A Polyadenylate-binding p 99.7 1.2E-17 4.1E-22 117.5 8.6 75 45-130 5-85 (89)
105 1s79_A Lupus LA protein; RRM, 99.7 8.1E-18 2.8E-22 122.4 7.9 76 43-129 8-88 (103)
106 2dhg_A TRNA selenocysteine ass 99.7 2.1E-17 7.1E-22 119.7 9.9 79 42-131 5-91 (104)
107 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-17 6.4E-22 122.1 9.7 75 44-129 26-104 (111)
108 2rs2_A Musashi-1, RNA-binding 99.7 1.8E-17 6.2E-22 121.5 9.6 82 39-131 18-105 (109)
109 2cq0_A Eukaryotic translation 99.7 1E-17 3.5E-22 121.2 8.1 79 42-131 11-96 (103)
110 2i2y_A Fusion protein consists 99.7 2.5E-17 8.4E-22 127.3 10.8 80 40-130 67-148 (150)
111 2cqp_A RNA-binding protein 12; 99.7 8.3E-18 2.8E-22 120.5 7.4 82 43-129 12-94 (98)
112 1nu4_A U1A RNA binding domain; 99.7 1.5E-17 5.2E-22 118.9 8.6 77 43-130 5-89 (97)
113 2kxn_B Transformer-2 protein h 99.7 1.5E-17 5E-22 125.8 9.0 80 41-131 41-127 (129)
114 1p1t_A Cleavage stimulation fa 99.7 2.9E-18 1E-22 124.2 4.9 79 41-130 3-88 (104)
115 2cqd_A RNA-binding region cont 99.7 5.8E-17 2E-21 119.8 11.9 80 39-130 10-96 (116)
116 2ek1_A RNA-binding protein 12; 99.7 5.2E-18 1.8E-22 120.8 5.9 79 45-128 14-93 (95)
117 2mss_A Protein (musashi1); RNA 99.7 6.6E-18 2.2E-22 115.2 6.1 69 48-127 1-75 (75)
118 3ex7_B RNA-binding protein 8A; 99.7 1.7E-17 5.8E-22 124.4 8.9 81 40-131 16-103 (126)
119 3ulh_A THO complex subunit 4; 99.7 1.8E-17 6.1E-22 120.7 8.7 77 41-128 24-106 (107)
120 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-18 5.2E-23 125.3 2.8 84 41-130 14-98 (100)
121 2fc9_A NCL protein; structure 99.7 1.6E-17 5.5E-22 119.8 8.1 81 42-131 11-92 (101)
122 1wi8_A EIF-4B, eukaryotic tran 99.7 1.1E-17 3.6E-22 121.4 7.1 82 44-131 13-95 (104)
123 1wf1_A RNA-binding protein RAL 99.7 2.9E-17 9.9E-22 120.4 9.4 74 44-130 25-100 (110)
124 2krb_A Eukaryotic translation 99.7 1E-17 3.5E-22 116.1 6.6 69 46-125 1-81 (81)
125 2e5g_A U6 snRNA-specific termi 99.7 5.6E-17 1.9E-21 115.5 10.7 79 42-131 4-83 (94)
126 1x4e_A RNA binding motif, sing 99.7 3.4E-18 1.2E-22 119.4 4.2 74 44-128 3-83 (85)
127 2dng_A Eukaryotic translation 99.7 1.1E-17 3.7E-22 121.2 6.6 78 42-131 11-94 (103)
128 3ns6_A Eukaryotic translation 99.7 8.9E-18 3.1E-22 121.3 5.8 75 44-129 4-92 (100)
129 2kvi_A Nuclear polyadenylated 99.7 1.4E-17 4.9E-22 119.2 6.8 75 43-130 7-83 (96)
130 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-17 4.2E-22 119.2 6.3 80 41-131 11-92 (96)
131 3lqv_A PRE-mRNA branch site pr 99.7 4.7E-17 1.6E-21 120.0 9.5 75 44-129 6-84 (115)
132 2dh8_A DAZ-associated protein 99.7 2.6E-17 9E-22 119.5 7.8 80 41-131 11-96 (105)
133 2cpy_A RNA-binding protein 12; 99.7 1.3E-17 4.3E-22 123.3 6.1 82 42-129 11-93 (114)
134 1wg1_A KIAA1579 protein, homol 99.7 1.5E-17 5.2E-22 117.1 6.3 75 43-129 2-77 (88)
135 2db1_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 123.6 6.8 80 43-128 14-96 (118)
136 2cpi_A CCR4-NOT transcription 99.7 2.3E-17 8E-22 121.3 7.4 77 44-131 13-102 (111)
137 2kt5_A RNA and export factor-b 99.7 2.3E-16 8E-21 117.9 12.9 79 42-131 31-115 (124)
138 3beg_B Splicing factor, argini 99.7 2.4E-17 8.3E-22 122.0 7.4 77 41-129 11-93 (115)
139 2kn4_A Immunoglobulin G-bindin 99.7 1.8E-16 6E-21 123.3 12.3 80 42-132 66-152 (158)
140 2hgl_A HNRPF protein, heteroge 99.7 1.5E-17 5E-22 127.0 6.0 82 41-128 39-123 (136)
141 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.5E-21 121.9 10.7 77 40-127 57-140 (140)
142 1wel_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 126.3 4.2 82 42-128 21-102 (124)
143 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.9E-22 123.3 5.1 75 43-128 22-102 (114)
144 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.7E-17 2.6E-21 125.3 10.0 81 41-132 34-121 (156)
145 2dgw_A Probable RNA-binding pr 99.7 3.4E-17 1.2E-21 115.8 7.3 82 42-130 6-87 (91)
146 1wg5_A Heterogeneous nuclear r 99.7 2.3E-17 8E-22 119.9 6.5 81 43-129 12-93 (104)
147 2fc8_A NCL protein; structure 99.7 1.8E-17 6.2E-22 119.6 5.8 82 42-131 11-93 (102)
148 2lea_A Serine/arginine-rich sp 99.7 1.8E-17 6.1E-22 126.3 5.9 79 42-131 43-128 (135)
149 2cqg_A TDP-43, TAR DNA-binding 99.7 2.3E-16 7.9E-21 114.0 11.2 80 40-131 9-94 (103)
150 1sjr_A Polypyrimidine tract-bi 99.7 1.7E-16 5.9E-21 124.1 11.2 76 44-130 44-124 (164)
151 1iqt_A AUF1, heterogeneous nuc 99.7 2E-17 6.7E-22 112.7 5.1 69 48-127 1-75 (75)
152 2jwn_A Embryonic polyadenylate 99.7 5.7E-17 2E-21 121.1 8.1 76 45-131 35-116 (124)
153 3egn_A RNA-binding protein 40; 99.7 6.2E-17 2.1E-21 124.0 8.4 91 42-132 41-132 (143)
154 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-17 8.4E-22 120.4 5.1 82 41-128 6-90 (107)
155 1wez_A HnRNP H', FTP-3, hetero 99.7 1.5E-17 5.2E-22 120.6 3.9 80 43-129 12-91 (102)
156 2diu_A KIAA0430 protein; struc 99.7 2.4E-16 8.1E-21 111.6 9.8 73 44-131 6-85 (96)
157 2dnn_A RNA-binding protein 12; 99.7 2.6E-17 8.9E-22 120.9 5.1 73 44-128 14-91 (109)
158 2e44_A Insulin-like growth fac 99.7 3.4E-16 1.2E-20 111.6 10.3 76 44-130 13-92 (96)
159 1x4b_A Heterogeneous nuclear r 99.7 1.9E-16 6.5E-21 117.0 9.0 78 44-132 25-108 (116)
160 1x5o_A RNA binding motif, sing 99.7 1.4E-16 4.7E-21 117.3 8.1 79 40-129 19-111 (114)
161 2ki2_A SS-DNA binding protein 99.7 2.8E-17 9.4E-22 116.0 4.1 72 47-130 2-80 (90)
162 2bz2_A Negative elongation fac 99.7 1.6E-16 5.5E-21 118.8 8.4 76 42-130 35-111 (121)
163 2hgm_A HNRPF protein, heteroge 99.7 3E-17 1E-21 123.5 4.2 74 43-128 39-119 (126)
164 3q2s_C Cleavage and polyadenyl 99.7 3E-17 1E-21 135.8 4.2 79 45-128 67-148 (229)
165 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-16 6.1E-21 124.5 8.3 80 40-130 66-152 (165)
166 3d2w_A TAR DNA-binding protein 99.7 3.6E-16 1.2E-20 110.5 9.0 74 43-130 8-84 (89)
167 2lcw_A RNA-binding protein FUS 99.5 7.2E-18 2.5E-22 124.8 0.0 85 42-131 3-96 (116)
168 2dha_A FLJ20171 protein; RRM d 99.7 7.1E-17 2.4E-21 121.1 5.0 79 44-128 21-103 (123)
169 1uaw_A Mouse-musashi-1; RNP-ty 99.6 7.8E-17 2.7E-21 110.2 4.5 69 47-127 1-76 (77)
170 2e5i_A Heterogeneous nuclear r 99.6 6.3E-16 2.2E-20 115.9 9.5 73 48-131 27-103 (124)
171 1wf0_A TDP-43, TAR DNA-binding 99.6 2.5E-16 8.7E-21 110.7 6.8 76 44-131 3-79 (88)
172 3zzy_A Polypyrimidine tract-bi 99.6 7.1E-16 2.4E-20 116.4 8.7 73 47-130 29-106 (130)
173 2hgn_A Heterogeneous nuclear r 99.6 4.8E-17 1.6E-21 124.5 2.2 82 42-130 42-123 (139)
174 2xs2_A Deleted in azoospermia- 99.6 1E-16 3.5E-21 115.7 3.0 76 43-130 6-86 (102)
175 2f3j_A RNA and export factor b 99.6 1.3E-15 4.4E-20 121.2 9.2 77 42-129 84-166 (177)
176 2dnl_A Cytoplasmic polyadenyla 99.6 2.8E-15 9.7E-20 110.5 9.7 78 41-126 3-84 (114)
177 3u1l_A PRE-mRNA-splicing facto 99.6 7.6E-16 2.6E-20 127.8 7.1 77 43-130 131-229 (240)
178 3pgw_A U1-A; protein-RNA compl 99.6 4.4E-15 1.5E-19 125.4 11.9 76 42-128 203-281 (282)
179 4f02_A Polyadenylate-binding p 99.6 2.3E-15 7.8E-20 122.7 8.3 75 45-130 102-181 (213)
180 3md3_A Nuclear and cytoplasmic 99.6 5E-15 1.7E-19 114.6 9.4 76 42-128 83-165 (166)
181 2qfj_A FBP-interacting repress 99.6 5.2E-15 1.8E-19 119.7 8.5 76 44-130 123-205 (216)
182 2g4b_A Splicing factor U2AF 65 99.6 7E-15 2.4E-19 114.8 8.7 73 44-127 92-171 (172)
183 2yh0_A Splicing factor U2AF 65 99.6 8.6E-15 2.9E-19 116.9 9.3 78 42-130 110-194 (198)
184 3pgw_S U1-70K; protein-RNA com 99.6 1.2E-14 4E-19 130.8 10.8 76 44-130 100-182 (437)
185 2voo_A Lupus LA protein; RNA-b 99.5 6.9E-15 2.4E-19 118.5 7.5 76 45-131 108-188 (193)
186 1fje_B Nucleolin RBD12, protei 99.5 6.6E-15 2.3E-19 115.5 6.8 77 42-129 95-173 (175)
187 2cjk_A Nuclear polyadenylated 99.5 8E-15 2.7E-19 114.0 7.0 75 45-130 86-166 (167)
188 1l3k_A Heterogeneous nuclear r 99.5 1.2E-14 4.2E-19 115.8 8.2 78 44-132 102-185 (196)
189 3nmr_A Cugbp ELAV-like family 99.5 2.1E-14 7.1E-19 112.2 7.7 73 44-127 93-174 (175)
190 1b7f_A Protein (SXL-lethal pro 99.5 3.7E-14 1.3E-18 110.1 8.7 74 43-127 86-168 (168)
191 2pe8_A Splicing factor 45; RRM 99.5 5.1E-14 1.8E-18 102.5 8.2 75 43-128 5-92 (105)
192 2j8a_A Histone-lysine N-methyl 99.5 1.1E-14 3.7E-19 108.9 3.9 77 47-128 3-94 (136)
193 1fxl_A Paraneoplastic encephal 99.5 6.2E-14 2.1E-18 108.5 8.0 73 44-127 86-167 (167)
194 3tht_A Alkylated DNA repair pr 99.5 9.6E-14 3.3E-18 120.8 9.3 75 42-127 14-96 (345)
195 2adc_A Polypyrimidine tract-bi 99.5 1.5E-13 5.2E-18 113.0 9.8 76 44-129 149-227 (229)
196 2dit_A HIV TAT specific factor 99.5 1.9E-13 6.4E-18 100.4 9.1 78 42-130 11-102 (112)
197 1qm9_A Polypyrimidine tract-bi 99.5 2E-13 6.7E-18 109.3 9.5 76 44-129 118-196 (198)
198 3tyt_A Heterogeneous nuclear r 99.5 1.1E-13 3.9E-18 112.3 8.0 66 44-120 121-193 (205)
199 3v4m_A Splicing factor U2AF 65 99.4 2.2E-12 7.4E-17 93.8 8.2 74 44-128 3-95 (105)
200 3sde_A Paraspeckle component 1 99.3 1.8E-12 6.2E-17 108.6 7.6 77 44-131 94-180 (261)
201 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-11 6.2E-16 88.2 11.5 73 46-131 10-91 (100)
202 1jmt_A Splicing factor U2AF 35 99.3 4.1E-13 1.4E-17 97.5 2.7 66 51-127 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.3 7.1E-12 2.4E-16 93.0 6.5 73 45-128 19-107 (118)
204 2kn4_A Immunoglobulin G-bindin 99.2 2.2E-11 7.5E-16 94.2 8.8 99 91-197 11-151 (158)
205 2i2y_A Fusion protein consists 99.2 7.1E-12 2.4E-16 96.4 5.1 99 92-196 12-148 (150)
206 3s6e_A RNA-binding protein 39; 99.2 3.6E-11 1.2E-15 88.6 8.6 74 44-128 5-91 (114)
207 1owx_A Lupus LA protein, SS-B, 99.1 4E-10 1.4E-14 83.6 8.2 76 39-125 11-91 (121)
208 2dnr_A Synaptojanin-1; RRM dom 99.1 5.4E-10 1.9E-14 78.3 8.3 70 47-129 8-85 (91)
209 1ufw_A Synaptojanin 2; RNP dom 98.9 2.8E-09 9.5E-14 75.0 7.8 69 47-128 16-93 (95)
210 2l9w_A U4/U6 snRNA-associated- 98.7 2.3E-07 7.9E-12 66.7 10.3 77 43-125 18-95 (117)
211 3dxb_A Thioredoxin N-terminall 98.6 2.4E-08 8.2E-13 81.3 5.4 60 58-128 141-211 (222)
212 2dhx_A Poly (ADP-ribose) polym 98.6 5.5E-07 1.9E-11 64.1 11.0 92 43-170 5-99 (104)
213 2lea_A Serine/arginine-rich sp 98.5 3.6E-08 1.2E-12 74.4 3.5 85 94-200 5-131 (135)
214 4fxv_A ELAV-like protein 1; RN 98.5 2.3E-07 7.8E-12 66.2 5.6 39 157-195 19-98 (99)
215 1rk8_A CG8781-PA, CG8781-PA pr 98.3 5.2E-07 1.8E-11 70.1 5.6 100 98-198 11-154 (165)
216 2dnp_A RNA-binding protein 14; 98.3 2.1E-06 7.3E-11 59.5 7.4 44 155-198 7-83 (90)
217 2dgt_A RNA-binding protein 30; 98.2 2.5E-06 8.6E-11 59.4 6.7 44 155-198 8-84 (92)
218 2cqh_A IGF-II mRNA-binding pro 98.2 4.4E-06 1.5E-10 58.2 7.4 44 155-198 6-85 (93)
219 4f25_A Polyadenylate-binding p 98.2 1.9E-06 6.5E-11 62.8 5.6 42 156-197 4-84 (115)
220 2cqb_A Peptidyl-prolyl CIS-tra 98.2 4.5E-06 1.5E-10 59.1 7.5 45 155-199 10-95 (102)
221 2fc8_A NCL protein; structure 98.2 3.8E-06 1.3E-10 59.5 7.0 44 155-198 13-94 (102)
222 2dgo_A Cytotoxic granule-assoc 98.2 5.1E-06 1.8E-10 60.2 7.6 46 155-200 13-99 (115)
223 3s8s_A Histone-lysine N-methyl 98.2 2.5E-06 8.6E-11 61.9 5.8 41 156-196 5-86 (110)
224 2cq3_A RNA-binding protein 9; 98.2 6.8E-06 2.3E-10 58.3 7.9 46 154-199 12-96 (103)
225 2fc9_A NCL protein; structure 98.2 4.5E-06 1.5E-10 59.1 6.8 44 155-198 13-93 (101)
226 2dgu_A Heterogeneous nuclear r 98.2 1E-05 3.4E-10 57.6 8.5 44 156-199 10-86 (103)
227 2e5h_A Zinc finger CCHC-type a 98.2 4.5E-06 1.5E-10 58.2 6.5 41 154-194 13-94 (94)
228 3mdf_A Peptidyl-prolyl CIS-tra 98.2 3.4E-06 1.2E-10 57.6 5.7 39 156-194 6-85 (85)
229 3md1_A Nuclear and cytoplasmic 98.1 3.2E-06 1.1E-10 57.5 5.3 39 158-196 2-81 (83)
230 2do4_A Squamous cell carcinoma 98.1 6.3E-06 2.2E-10 58.2 7.0 43 155-197 15-97 (100)
231 2dnz_A Probable RNA-binding pr 98.1 3.7E-06 1.2E-10 58.8 5.7 43 156-198 4-87 (95)
232 2cpd_A Apobec-1 stimulating pr 98.1 7.4E-06 2.5E-10 57.8 7.3 44 155-198 13-91 (99)
233 1x4a_A Splicing factor, argini 98.1 5.9E-06 2E-10 59.3 6.9 44 155-198 20-101 (109)
234 2cq0_A Eukaryotic translation 98.1 4.9E-06 1.7E-10 59.1 6.4 44 155-198 13-97 (103)
235 2cqi_A Nucleolysin TIAR; RNA r 98.1 9.2E-06 3.2E-10 57.6 7.8 44 155-198 13-95 (103)
236 2cqc_A Arginine/serine-rich sp 98.1 3.2E-06 1.1E-10 59.0 5.3 42 155-196 13-95 (95)
237 2dnm_A SRP46 splicing factor; 98.1 4.6E-06 1.6E-10 59.3 6.2 44 155-198 11-95 (103)
238 1x5s_A Cold-inducible RNA-bind 98.1 4E-06 1.4E-10 59.4 5.8 45 155-199 10-95 (102)
239 2cpz_A CUG triplet repeat RNA- 98.1 9.5E-06 3.3E-10 58.8 7.9 44 155-198 23-107 (115)
240 1whw_A Hypothetical protein ri 98.1 5.8E-06 2E-10 58.2 6.5 43 156-198 7-90 (99)
241 2e5j_A Methenyltetrahydrofolat 98.1 7.3E-06 2.5E-10 57.6 6.9 42 155-196 17-94 (97)
242 2ek1_A RNA-binding protein 12; 98.1 2.6E-06 8.7E-11 59.6 4.4 40 156-195 14-94 (95)
243 2x1f_A MRNA 3'-END-processing 98.1 4.8E-06 1.6E-10 58.4 5.8 41 157-197 2-83 (96)
244 1x5u_A Splicing factor 3B subu 98.1 5.8E-06 2E-10 58.9 6.3 45 154-198 12-97 (105)
245 1x4g_A Nucleolysin TIAR; struc 98.1 5.9E-06 2E-10 59.4 6.3 45 154-198 22-101 (109)
246 4a8x_A RNA-binding protein wit 98.1 6.2E-06 2.1E-10 56.6 6.1 40 157-196 4-85 (88)
247 2dnq_A RNA-binding protein 4B; 98.1 4E-06 1.4E-10 58.1 5.1 45 155-199 6-83 (90)
248 2cqp_A RNA-binding protein 12; 98.1 5.7E-06 2E-10 58.1 6.0 42 155-196 13-95 (98)
249 3bs9_A Nucleolysin TIA-1 isofo 98.1 4E-06 1.4E-10 57.5 4.9 41 156-196 5-86 (87)
250 3pgw_S U1-70K; protein-RNA com 98.1 5.9E-07 2E-11 80.6 0.7 42 155-196 100-182 (437)
251 2lxi_A RNA-binding protein 10; 98.1 4.1E-06 1.4E-10 58.5 4.8 41 158-198 2-85 (91)
252 2xnq_A Nuclear polyadenylated 98.1 6.9E-06 2.4E-10 58.0 6.0 42 155-196 20-95 (97)
253 2dgx_A KIAA0430 protein; RRM d 98.1 8E-06 2.7E-10 57.4 6.3 41 157-197 9-91 (96)
254 1wf1_A RNA-binding protein RAL 98.1 1.1E-05 3.9E-10 58.0 7.1 40 157-196 27-100 (110)
255 2cpj_A Non-POU domain-containi 98.1 1E-05 3.4E-10 57.1 6.7 43 155-197 13-90 (99)
256 2dgw_A Probable RNA-binding pr 98.0 1.1E-05 3.7E-10 55.9 6.7 42 155-197 8-88 (91)
257 1fjc_A Nucleolin RBD2, protein 98.0 6.7E-06 2.3E-10 57.6 5.6 43 156-198 15-93 (96)
258 2do0_A HnRNP M, heterogeneous 98.0 1.5E-05 5.2E-10 57.5 7.7 44 155-198 13-96 (114)
259 2fy1_A RNA-binding motif prote 98.0 8.6E-06 2.9E-10 59.5 6.4 45 155-199 5-89 (116)
260 2lkz_A RNA-binding protein 5; 98.0 7.2E-06 2.5E-10 57.9 5.8 40 156-195 8-94 (95)
261 2err_A Ataxin-2-binding protei 98.0 9.2E-06 3.1E-10 58.6 6.4 43 154-196 26-107 (109)
262 1x5t_A Splicing factor 3B subu 98.0 1E-05 3.5E-10 56.5 6.4 43 156-198 4-88 (96)
263 2dgv_A HnRNP M, heterogeneous 98.0 5.4E-06 1.8E-10 57.5 4.9 43 156-198 7-88 (92)
264 2ywk_A Putative RNA-binding pr 98.0 4.7E-06 1.6E-10 58.2 4.7 41 155-195 14-94 (95)
265 2d9p_A Polyadenylate-binding p 98.0 1.2E-05 4.1E-10 57.1 6.9 44 155-198 13-95 (103)
266 1why_A Hypothetical protein ri 98.0 1.1E-05 3.7E-10 56.7 6.5 43 155-197 15-94 (97)
267 2la4_A Nuclear and cytoplasmic 98.0 3.7E-06 1.3E-10 59.6 3.8 40 156-195 26-100 (101)
268 2jvr_A Nucleolar protein 3; RN 98.0 7.1E-06 2.4E-10 59.7 5.4 41 156-196 27-105 (111)
269 2cpf_A RNA binding motif prote 98.0 1.1E-05 3.6E-10 56.7 6.2 44 156-199 4-91 (98)
270 1wg1_A KIAA1579 protein, homol 98.0 1.1E-05 3.7E-10 55.7 6.1 41 156-196 4-78 (88)
271 1x4c_A Splicing factor, argini 98.0 9.8E-06 3.4E-10 58.2 5.9 43 156-198 14-95 (108)
272 1u6f_A Tcubp1, RNA-binding pro 98.0 3.4E-05 1.2E-09 57.7 9.2 46 154-199 39-125 (139)
273 2khc_A Testis-specific RNP-typ 98.0 2.3E-05 7.7E-10 57.0 8.0 40 155-194 38-118 (118)
274 2dgs_A DAZ-associated protein 98.0 1.1E-05 3.6E-10 56.9 6.0 42 156-198 9-91 (99)
275 2dng_A Eukaryotic translation 98.0 9.6E-06 3.3E-10 57.6 5.8 43 155-198 13-95 (103)
276 2ytc_A PRE-mRNA-splicing facto 98.0 9.1E-06 3.1E-10 55.5 5.3 40 155-194 10-85 (85)
277 2jvo_A Nucleolar protein 3; nu 98.0 8.8E-06 3E-10 58.7 5.4 44 155-198 29-105 (108)
278 2div_A TRNA selenocysteine ass 98.0 8.5E-06 2.9E-10 57.3 5.2 44 155-198 7-96 (99)
279 1oo0_B CG8781-PA, drosophila Y 98.0 1.1E-05 3.6E-10 58.0 5.6 42 156-197 25-107 (110)
280 1fj7_A Nucleolin RBD1, protein 98.0 9.5E-06 3.2E-10 57.4 5.2 42 156-198 16-97 (101)
281 2dnh_A Bruno-like 5, RNA bindi 98.0 1.4E-05 4.9E-10 56.8 6.0 44 155-198 13-99 (105)
282 2cpx_A Hypothetical protein FL 98.0 1.3E-05 4.5E-10 57.9 6.0 43 156-198 24-107 (115)
283 1sjq_A Polypyrimidine tract-bi 98.0 8E-06 2.7E-10 58.9 4.7 47 155-201 14-97 (105)
284 2wbr_A GW182, gawky, LD47780P; 97.9 8.3E-06 2.8E-10 56.8 4.4 38 157-194 7-79 (89)
285 2jrs_A RNA-binding protein 39; 97.9 1E-05 3.5E-10 58.3 5.1 43 154-196 23-106 (108)
286 1x4h_A RNA-binding protein 28; 97.9 2.4E-05 8.3E-10 56.1 7.0 44 155-198 13-103 (111)
287 3ulh_A THO complex subunit 4; 97.9 1.2E-05 4.1E-10 57.4 5.3 40 155-194 27-106 (107)
288 2cpe_A RNA-binding protein EWS 97.9 2.4E-05 8.2E-10 56.4 6.9 44 155-198 13-105 (113)
289 1p27_B RNA-binding protein 8A; 97.9 1E-05 3.5E-10 57.7 4.6 41 156-196 22-103 (106)
290 1nu4_A U1A RNA binding domain; 97.9 1.8E-05 6.1E-10 55.4 5.9 42 156-197 7-90 (97)
291 2dgp_A Bruno-like 4, RNA bindi 97.9 1.9E-05 6.4E-10 56.3 5.9 44 155-198 11-98 (106)
292 2e44_A Insulin-like growth fac 97.9 1.3E-05 4.3E-10 56.1 4.9 41 156-196 14-92 (96)
293 1whx_A Hypothetical protein ri 97.9 8.8E-06 3E-10 58.9 4.1 40 157-196 10-84 (111)
294 3lqv_A PRE-mRNA branch site pr 97.9 1.2E-05 4.2E-10 58.2 4.6 43 155-197 6-86 (115)
295 2kvi_A Nuclear polyadenylated 97.9 8.1E-06 2.8E-10 57.3 3.5 43 156-198 9-85 (96)
296 3r27_A HnRNP L, heterogeneous 97.9 1.4E-05 4.7E-10 57.1 4.7 41 156-196 20-97 (100)
297 1h2v_Z 20 kDa nuclear CAP bind 97.9 3E-05 1E-09 59.3 6.8 42 155-196 37-119 (156)
298 2cph_A RNA binding motif prote 97.9 4.3E-05 1.5E-09 54.3 7.0 44 155-198 13-99 (107)
299 3ucg_A Polyadenylate-binding p 97.8 1.8E-05 6.2E-10 54.4 4.8 39 157-196 6-85 (89)
300 3ex7_B RNA-binding protein 8A; 97.8 1.8E-05 6.3E-10 58.2 5.1 44 156-199 21-105 (126)
301 2a3j_A U1 small nuclear ribonu 97.8 1.9E-05 6.5E-10 58.8 5.2 42 156-197 28-111 (127)
302 2kxn_B Transformer-2 protein h 97.8 9.1E-06 3.1E-10 60.6 3.4 43 154-196 43-126 (129)
303 2hvz_A Splicing factor, argini 97.8 2E-05 6.7E-10 55.7 5.0 41 158-198 1-77 (101)
304 2diu_A KIAA0430 protein; struc 97.8 1.4E-05 4.9E-10 56.3 4.1 40 157-196 8-84 (96)
305 2cq1_A PTB-like protein L; RRM 97.8 5.2E-05 1.8E-09 54.1 7.2 44 156-199 14-94 (101)
306 1x4d_A Matrin 3; structural ge 97.8 2.3E-05 7.8E-10 56.1 5.2 42 155-196 13-92 (102)
307 2cqd_A RNA-binding region cont 97.8 3.7E-05 1.3E-09 55.7 6.5 42 154-196 14-96 (116)
308 1wey_A Calcipressin 1; structu 97.8 4.1E-05 1.4E-09 54.6 6.4 73 45-128 4-82 (104)
309 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 2.5E-05 8.5E-10 58.3 5.5 40 154-193 60-140 (140)
310 1p1t_A Cleavage stimulation fa 97.8 1.2E-05 4.2E-10 57.0 3.6 41 157-197 8-89 (104)
311 2kt5_A RNA and export factor-b 97.8 6.1E-05 2.1E-09 55.3 7.5 42 155-196 33-114 (124)
312 3s7r_A Heterogeneous nuclear r 97.8 3.3E-05 1.1E-09 52.9 5.6 38 155-193 9-87 (87)
313 1wi8_A EIF-4B, eukaryotic tran 97.8 3.7E-05 1.3E-09 54.6 6.0 43 155-198 13-96 (104)
314 3n9u_C Cleavage and polyadenyl 97.8 2.1E-05 7.3E-10 60.5 4.9 41 156-196 54-137 (156)
315 2la6_A RNA-binding protein FUS 97.8 3.9E-05 1.3E-09 54.0 5.8 41 154-194 10-99 (99)
316 1wel_A RNA-binding protein 12; 97.8 2.2E-05 7.7E-10 57.7 4.8 41 155-196 23-104 (124)
317 2cpi_A CCR4-NOT transcription 97.8 2.9E-05 9.8E-10 56.0 5.2 26 173-198 78-103 (111)
318 3p5t_L Cleavage and polyadenyl 97.8 8E-06 2.7E-10 56.6 2.0 40 158-197 2-84 (90)
319 2e5g_A U6 snRNA-specific termi 97.8 2.9E-05 1E-09 54.1 4.9 40 156-196 7-82 (94)
320 2dis_A Unnamed protein product 97.8 3.9E-05 1.3E-09 54.9 5.5 43 156-198 7-94 (109)
321 2m2b_A RNA-binding protein 10; 97.8 4.6E-05 1.6E-09 56.6 6.1 45 155-199 21-111 (131)
322 2dhg_A TRNA selenocysteine ass 97.7 2.9E-05 1E-09 55.0 4.6 44 155-198 7-92 (104)
323 2dh8_A DAZ-associated protein 97.7 3.3E-05 1.1E-09 54.9 4.8 45 154-199 13-98 (105)
324 1wez_A HnRNP H', FTP-3, hetero 97.7 4.9E-05 1.7E-09 54.1 5.6 44 154-198 12-94 (102)
325 2cq4_A RNA binding motif prote 97.7 2E-05 6.7E-10 57.0 3.5 40 157-197 25-105 (114)
326 2ad9_A Polypyrimidine tract-bi 97.7 4E-05 1.4E-09 56.4 5.2 44 156-199 30-110 (119)
327 1x4e_A RNA binding motif, sing 97.7 4E-06 1.4E-10 57.3 -0.3 40 156-195 4-84 (85)
328 3egn_A RNA-binding protein 40; 97.7 3.8E-05 1.3E-09 57.8 5.0 41 156-196 44-130 (143)
329 3ns6_A Eukaryotic translation 97.7 9E-06 3.1E-10 57.7 1.3 24 173-196 69-93 (100)
330 2nlw_A Eukaryotic translation 97.7 4.3E-05 1.5E-09 54.5 4.7 24 173-196 76-100 (105)
331 2mss_A Protein (musashi1); RNA 97.7 2.2E-05 7.5E-10 52.2 2.8 34 159-193 1-75 (75)
332 1x5o_A RNA binding motif, sing 97.7 7.3E-05 2.5E-09 53.9 5.8 42 155-196 23-112 (114)
333 2db1_A Heterogeneous nuclear r 97.7 7.9E-05 2.7E-09 54.4 6.0 42 154-196 14-98 (118)
334 2jwn_A Embryonic polyadenylate 97.7 4.7E-05 1.6E-09 55.8 4.7 39 157-196 36-115 (124)
335 1wex_A Hypothetical protein (r 97.6 4.1E-05 1.4E-09 54.9 4.2 42 156-197 14-92 (104)
336 2ki2_A SS-DNA binding protein 97.6 1.3E-05 4.5E-10 55.3 1.3 40 158-197 2-81 (90)
337 2rs2_A Musashi-1, RNA-binding 97.6 8.6E-05 2.9E-09 53.4 5.3 43 155-198 23-106 (109)
338 1x4f_A Matrin 3; structural ge 97.6 4.8E-05 1.6E-09 55.4 3.9 42 155-196 23-102 (112)
339 1x5p_A Negative elongation fac 97.6 0.00022 7.6E-09 49.8 7.0 42 155-198 13-89 (97)
340 2j76_E EIF-4B, EIF4B, eukaryot 97.6 2.8E-05 9.7E-10 54.9 2.1 41 155-196 17-98 (100)
341 3zzy_A Polypyrimidine tract-bi 97.5 0.0001 3.5E-09 55.0 5.3 39 158-196 29-106 (130)
342 1uaw_A Mouse-musashi-1; RNP-ty 97.5 4.9E-05 1.7E-09 50.6 3.1 20 173-193 57-76 (77)
343 1wg5_A Heterogeneous nuclear r 97.5 0.00015 5.1E-09 51.5 5.8 42 155-197 13-95 (104)
344 1x4b_A Heterogeneous nuclear r 97.5 9.7E-05 3.3E-09 53.4 4.8 41 157-198 27-108 (116)
345 2cpy_A RNA-binding protein 12; 97.5 0.00013 4.5E-09 52.8 5.3 42 155-197 13-95 (114)
346 1s79_A Lupus LA protein; RRM, 97.5 7.3E-05 2.5E-09 53.4 3.3 38 157-195 11-88 (103)
347 2lmi_A GRSF-1, G-rich sequence 97.4 6E-05 2.1E-09 53.9 2.7 41 155-196 9-92 (107)
348 2dnn_A RNA-binding protein 12; 97.4 0.00016 5.5E-09 52.2 4.9 38 158-196 17-93 (109)
349 2cqg_A TDP-43, TAR DNA-binding 97.4 0.00039 1.3E-08 49.0 6.9 42 155-198 13-95 (103)
350 1sjr_A Polypyrimidine tract-bi 97.4 0.00012 4.3E-09 56.7 4.5 39 158-196 47-124 (164)
351 2hgl_A HNRPF protein, heteroge 97.4 0.00014 4.7E-09 54.7 4.5 41 155-196 42-125 (136)
352 2f3j_A RNA and export factor b 97.4 0.00015 5E-09 57.0 4.6 42 155-196 86-167 (177)
353 3q2s_C Cleavage and polyadenyl 97.4 0.0001 3.4E-09 60.3 3.5 40 156-195 67-149 (229)
354 2lcw_A RNA-binding protein FUS 96.5 3E-05 1E-09 56.3 0.0 25 173-197 72-96 (116)
355 3beg_B Splicing factor, argini 97.3 9.5E-05 3.2E-09 53.7 2.6 41 156-196 15-94 (115)
356 1iqt_A AUF1, heterogeneous nuc 97.3 0.00015 5E-09 48.0 3.1 34 159-193 1-75 (75)
357 2krb_A Eukaryotic translation 97.3 6E-05 2E-09 51.0 0.9 18 173-190 62-80 (81)
358 2hzc_A Splicing factor U2AF 65 97.3 0.00018 6.2E-09 48.9 3.4 16 157-172 6-21 (87)
359 1wwh_A Nucleoporin 35, nucleop 97.3 0.001 3.4E-08 48.6 7.4 71 44-126 22-93 (119)
360 3d2w_A TAR DNA-binding protein 97.2 0.00047 1.6E-08 47.6 5.4 43 155-197 9-85 (89)
361 2hgn_A Heterogeneous nuclear r 97.2 0.00011 3.9E-09 55.4 2.4 43 155-198 44-125 (139)
362 1wf0_A TDP-43, TAR DNA-binding 97.2 0.00077 2.6E-08 46.0 6.5 43 156-198 4-80 (88)
363 2e5i_A Heterogeneous nuclear r 97.2 0.00031 1E-08 52.0 4.4 39 159-197 27-103 (124)
364 2bz2_A Negative elongation fac 97.0 0.00076 2.6E-08 49.4 5.0 41 155-197 37-112 (121)
365 2cq2_A Hypothetical protein LO 97.0 0.00073 2.5E-08 49.2 4.8 40 156-195 24-105 (114)
366 2xs2_A Deleted in azoospermia- 97.0 0.00066 2.3E-08 47.7 4.2 38 157-196 9-86 (102)
367 2dha_A FLJ20171 protein; RRM d 96.9 0.00073 2.5E-08 49.8 3.6 41 155-196 21-105 (123)
368 1uw4_A UPF3X; nonsense mediate 96.8 0.0016 5.3E-08 45.5 4.9 63 47-120 2-73 (91)
369 2hgm_A HNRPF protein, heteroge 96.8 0.0008 2.7E-08 49.8 3.4 17 156-172 41-57 (126)
370 3u1l_A PRE-mRNA-splicing facto 96.8 0.00062 2.1E-08 56.1 2.9 41 156-196 133-229 (240)
371 3pq1_A Poly(A) RNA polymerase; 96.7 0.00067 2.3E-08 60.9 2.9 54 47-112 54-108 (464)
372 2voo_A Lupus LA protein; RNA-b 96.6 0.005 1.7E-07 48.7 7.2 81 102-195 63-186 (193)
373 2j8a_A Histone-lysine N-methyl 96.5 0.0036 1.2E-07 46.6 4.9 25 173-197 71-97 (136)
374 1whv_A Poly(A)-specific ribonu 96.0 0.021 7.3E-07 40.0 6.7 53 48-113 17-70 (100)
375 2pe8_A Splicing factor 45; RRM 95.9 0.012 4.1E-07 41.8 5.0 23 173-195 71-93 (105)
376 2l08_A Regulator of nonsense t 95.9 0.0068 2.3E-07 42.6 3.5 65 45-120 8-81 (97)
377 3p3d_A Nucleoporin 53; structu 95.6 0.017 5.9E-07 42.7 5.1 80 47-127 8-96 (132)
378 2dit_A HIV TAT specific factor 95.4 0.029 1E-06 39.9 5.7 24 173-196 79-102 (112)
379 2dnl_A Cytoplasmic polyadenyla 95.3 0.022 7.5E-07 40.7 4.8 17 156-172 7-23 (114)
380 3ctr_A Poly(A)-specific ribonu 95.2 0.014 4.8E-07 41.0 3.1 52 49-113 8-60 (101)
381 2l9w_A U4/U6 snRNA-associated- 93.1 0.2 6.8E-06 35.9 5.6 37 156-192 20-96 (117)
382 2dnr_A Synaptojanin-1; RRM dom 92.5 0.075 2.6E-06 36.8 2.6 23 173-196 64-86 (91)
383 3tht_A Alkylated DNA repair pr 92.4 0.14 4.9E-06 44.1 4.8 40 155-194 16-97 (345)
384 3v4m_A Splicing factor U2AF 65 91.1 0.16 5.4E-06 35.8 3.2 35 158-195 60-96 (105)
385 3s6e_A RNA-binding protein 39; 90.8 0.17 5.9E-06 36.3 3.2 23 173-195 70-92 (114)
386 1ufw_A Synaptojanin 2; RNP dom 90.4 0.16 5.6E-06 35.3 2.6 23 173-196 73-95 (95)
387 1jmt_A Splicing factor U2AF 35 89.9 0.17 5.9E-06 35.5 2.5 21 173-193 83-103 (104)
388 3ue2_A Poly(U)-binding-splicin 89.5 0.25 8.7E-06 35.6 3.2 23 173-195 86-108 (118)
389 1wey_A Calcipressin 1; structu 83.2 1.4 4.7E-05 31.1 4.0 24 173-196 61-84 (104)
390 3d45_A Poly(A)-specific ribonu 82.6 3.2 0.00011 37.5 7.3 54 47-114 441-495 (507)
391 3dxb_A Thioredoxin N-terminall 72.9 1.6 5.6E-05 34.3 2.1 22 173-194 190-211 (222)
392 1owx_A Lupus LA protein, SS-B, 64.6 9.1 0.00031 27.5 4.5 17 156-172 17-34 (121)
393 2g0c_A ATP-dependent RNA helic 58.0 20 0.00067 22.9 4.9 70 48-127 2-74 (76)
394 3swz_A Steroid 17-alpha-hydrox 24.7 1.1E+02 0.0039 26.1 5.7 58 50-121 18-79 (494)
395 1fme_A FSD-EY peptide; beta-BE 22.5 51 0.0017 16.6 1.6 12 59-70 14-25 (28)
396 1i4w_A Mitochondrial replicati 21.7 82 0.0028 26.8 4.0 60 48-120 144-203 (353)
397 3h7h_B Transcription elongatio 21.4 1.3E+02 0.0045 20.8 4.3 33 83-115 40-74 (106)
398 4eyt_A Telomerase associated p 21.4 2E+02 0.0067 19.5 7.1 56 44-112 10-66 (129)
399 2ki0_A DS119; beta-alpha-beta, 20.9 63 0.0022 17.2 1.9 22 44-70 3-24 (36)
400 2k5n_A Putative cold-shock pro 20.3 59 0.002 20.9 2.2 14 89-102 10-23 (74)
No 1
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=9.8e-27 Score=186.89 Aligned_cols=155 Identities=82% Similarity=1.276 Sum_probs=126.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 123 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~ 123 (231)
+.+++|||+|||+++|+++|+++|+.||.+.++...++..|.++++.+++|||||+|.+.++|.+||.|||..+.|+.|+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 46789999999999999999999999999888765666679999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------------
Q psy2204 124 IRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------------- 172 (231)
Q Consensus 124 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------------- 172 (231)
|.++..+..............+ +..........++|||+|||+.++++
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCT-TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCC-CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9988776544332222111111 22223334566899999999999998
Q ss_pred ----------HHHHHhCCCeeCCeEEEEEEeecCccc
Q psy2204 173 ----------QAIAGLNGMQLGDKKLIVQRASVGAKN 199 (231)
Q Consensus 173 ----------~Ai~~lnG~~i~gr~l~V~~a~~~~~~ 199 (231)
+|+..|||..++|+.|+|++|.++.++
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 899999999999999999999876543
No 2
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=6.1e-26 Score=178.34 Aligned_cols=130 Identities=82% Similarity=1.277 Sum_probs=116.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceEE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 123 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i~ 123 (231)
+++++|||+|||+++|+++|+++|++||.+.++...++..|.++++.+++|||||+|.+.++|.+|+.+||..+.|+.|+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 46789999999999999999999999998887665556679999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------------
Q psy2204 124 IRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------------- 172 (231)
Q Consensus 124 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------------- 172 (231)
|.++..+... ...++|||+|||.++|++
T Consensus 82 v~~~~~~~~~---------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~af 140 (172)
T 2g4b_A 82 IRRPHDYQPL---------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 140 (172)
T ss_dssp EECCSSCCCC---------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEE
T ss_pred ecCCcccCCC---------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEE
Confidence 9987654321 125899999999999998
Q ss_pred ----------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 173 ----------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 173 ----------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
+|+..|||..++|+.|+|++|+
T Consensus 141 V~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 141 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 8999999999999999999985
No 3
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1e-24 Score=172.07 Aligned_cols=131 Identities=14% Similarity=0.335 Sum_probs=115.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCc
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ 120 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr 120 (231)
...+..++|||+|||+++|+++|+++|+.||.+.++ .+.+....+++|||||+|.+.++|.+|++|||..+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 81 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGN 81 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCe
Confidence 345678999999999999999999999999988763 57888889999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH----------------------------
Q psy2204 121 SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------------------------- 172 (231)
Q Consensus 121 ~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee---------------------------- 172 (231)
.|+|.++...... .....++|||+|||+++|++
T Consensus 82 ~l~v~~~~~~~~~-------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~ 142 (175)
T 1fje_B 82 EIKLEKPKGRDSK-------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIE 142 (175)
T ss_dssp EEEEECCCCSSCS-------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEE
T ss_pred EEEEecCCCcccc-------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEE
Confidence 9999988653211 11234799999999999998
Q ss_pred --------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 --------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 --------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|+..|||..|.|+.|+|++|.++
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 143 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999754
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=7.8e-25 Score=179.08 Aligned_cols=124 Identities=25% Similarity=0.399 Sum_probs=105.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.+.++|||||||+++|+++|+++|++|| .|.++++.+ ++|||||+|.+.++|.+|| .+|+..
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G-----------~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~ 81 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAG-----------PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV 81 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhC-----------CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh
Confidence 4567999999999999999999999999 677776654 4689999999999999999 999999
Q ss_pred ecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH------------------------
Q psy2204 117 FKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------ 172 (231)
Q Consensus 117 l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------ 172 (231)
+.|+.|++.++...... .....++|||+|||+++|++
T Consensus 82 ~~g~~i~~~~~~~~~~~-------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~ 142 (213)
T 4f02_A 82 IKGKPVRIMWSQRDPSL-------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS 142 (213)
T ss_dssp ETTEECEEEECCCCTHH-------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE
T ss_pred cCCcccccccccccccc-------------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCC
Confidence 99999999876532211 01124689999999999999
Q ss_pred ---------------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 173 ---------------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 173 ---------------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
+|++.|||+.|+|+.|+|++|.++.
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 8999999999999999999998653
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-23 Score=163.81 Aligned_cols=118 Identities=25% Similarity=0.522 Sum_probs=103.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
|+|||+|||+++|+++|+++|++|| .|.++++.+ ++|||||+|.+.++|.+|+ .+||..+.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGG-----------PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENN 69 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGS-----------CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC
Confidence 6999999999999999999999999 677776643 4699999999999999999 9999999999
Q ss_pred eEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH----------------------------
Q psy2204 121 SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED---------------------------- 172 (231)
Q Consensus 121 ~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee---------------------------- 172 (231)
.|.|.++...... .....++|||+|||.++|++
T Consensus 70 ~i~v~~~~~~~~~-------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 130 (166)
T 3md3_A 70 IVKINWAFQSQQS-------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRG 130 (166)
T ss_dssp ECEEEECCCCCCC-------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEE
T ss_pred eeEEEEcCCCCCC-------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcce
Confidence 9999987643321 12235789999999999998
Q ss_pred -------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 173 -------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 173 -------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
+|+..|||..++|+.|+|+||.
T Consensus 131 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 131 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 8999999999999999999986
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.90 E-value=3.9e-23 Score=165.54 Aligned_cols=132 Identities=18% Similarity=0.351 Sum_probs=102.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHhC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAFD 113 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~ln 113 (231)
+......++|||+|||+++|+++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+||.++
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 75 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWG-----------TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcC
Confidence 34456788999999999999999999999999 677766644 3689999999999999999779
Q ss_pred CCeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH---------------------
Q psy2204 114 GINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED--------------------- 172 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee--------------------- 172 (231)
+..+.|+.|.|.++........ .......++|||+|||+++|++
T Consensus 76 ~~~~~g~~l~v~~~~~~~~~~~---------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 76 PHKVDGRVVEPKRAVSREDSQR---------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp SCEETTEECEEEECCC--------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCEECCEEeeeecccCcccccc---------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 9999999999998764432210 0112234799999999999998
Q ss_pred --------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 --------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 --------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
+|+.. +|..|+|+.|+|++|.+...
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 66665 89999999999999986643
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.90 E-value=6.9e-23 Score=160.07 Aligned_cols=117 Identities=24% Similarity=0.445 Sum_probs=102.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
++++|||+|||+++++++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+|+ .+||..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 70 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIG-----------PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV 70 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTS-----------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe
Confidence 468999999999999999999999999 677766643 3689999999999999999 8999999
Q ss_pred cCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------
Q psy2204 118 KGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------- 172 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------- 172 (231)
.|+.|.|.++.+... ....++|||+|||.+++++
T Consensus 71 ~g~~l~v~~~~~~~~---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 129 (168)
T 1b7f_A 71 RNKRLKVSYARPGGE---------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR 129 (168)
T ss_dssp TTEECEEEECCCCSS---------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCC
T ss_pred CCcEEEEEecCCCcc---------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCC
Confidence 999999998764321 1234789999999999998
Q ss_pred ----------------HHHHHhCCCeeCC--eEEEEEEe
Q psy2204 173 ----------------QAIAGLNGMQLGD--KKLIVQRA 193 (231)
Q Consensus 173 ----------------~Ai~~lnG~~i~g--r~l~V~~a 193 (231)
+|+..|||..+.| +.|+|++|
T Consensus 130 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 130 PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 8999999999987 99999986
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=2.5e-22 Score=165.86 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=110.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 44 RQARRLYVGNIPF-GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 44 ~~~r~lfVgNLp~-~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
..+++|||+|||+ ++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G-----------~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYG-----------DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHT-----------CEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCC-----------CeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4678999999999 999999999999999 8999988877 599999999999999999 8999999999
Q ss_pred eEEEeCCCCCCCCCCCCCCC------------cccC--CCCcccCcCCCCCCcEEEcCCCCCCCHH--------------
Q psy2204 121 SLKIRRPHDYQPTPGVTDNA------------AVAV--PAGVISTVVPDSPHKIFIGGLPNYLNED-------------- 172 (231)
Q Consensus 121 ~i~V~~~~~~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------- 172 (231)
.|+|.+++............ .... .............++|||+|||.+++++
T Consensus 101 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~ 180 (229)
T 2adc_A 101 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 180 (229)
T ss_dssp BCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE
T ss_pred EEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCee
Confidence 99999876442111000000 0000 0000011112345899999999999998
Q ss_pred -----------------------HHHHHhCCCeeC-CeEEEEEEeecC
Q psy2204 173 -----------------------QAIAGLNGMQLG-DKKLIVQRASVG 196 (231)
Q Consensus 173 -----------------------~Ai~~lnG~~i~-gr~l~V~~a~~~ 196 (231)
+|+..|||..+. |+.|+|+|+.+.
T Consensus 181 ~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 181 GFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 899999999999 999999999753
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.90 E-value=5.7e-23 Score=160.05 Aligned_cols=117 Identities=20% Similarity=0.458 Sum_probs=101.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
++++|||+|||+++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G-----------~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 69 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIG-----------EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 69 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 368999999999999999999999999 6777777554 499999999999999999 8999999
Q ss_pred cCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------
Q psy2204 118 KGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------- 172 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------- 172 (231)
.|+.|+|.++.+... ....++|||+|||..++++
T Consensus 70 ~g~~l~v~~~~~~~~---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 128 (167)
T 1fxl_A 70 QTKTIKVSYARPSSA---------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 128 (167)
T ss_dssp TTEECEEEECCCCCG---------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CCceEEEEecCCCcc---------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCC
Confidence 999999998764321 1234789999999999998
Q ss_pred ----------------HHHHHhCCCeeCCeE--EEEEEe
Q psy2204 173 ----------------QAIAGLNGMQLGDKK--LIVQRA 193 (231)
Q Consensus 173 ----------------~Ai~~lnG~~i~gr~--l~V~~a 193 (231)
+|++.|||..+.|+. |+|+||
T Consensus 129 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 129 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 889999999999965 888876
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=1.7e-23 Score=155.38 Aligned_cols=103 Identities=12% Similarity=0.307 Sum_probs=67.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC----CcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~----kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
+.+|||+|||+++|+++|+++|++|| .|.++++.++ ||||||+|.+.++|.+|| .|||..|.||
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G-----------~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFG-----------NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccC-----------CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45899999999999999999999999 6777776543 689999999999999999 9999999999
Q ss_pred eEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH
Q psy2204 121 SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED 172 (231)
Q Consensus 121 ~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee 172 (231)
.|+|.+++......... .......++|||+|||+++|++
T Consensus 74 ~i~V~~a~~~~~~~~~~-------------~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 74 KVFVGRFKSRKEREAEL-------------GARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ECEEEESSCCCC----------------------------------------
T ss_pred EEEEEECCCcccccccc-------------ccccCCCCceEeCCCCCCcccc
Confidence 99999876543221110 0112234679999999999986
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.89 E-value=4e-22 Score=168.92 Aligned_cols=79 Identities=22% Similarity=0.414 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHHHhhhhhhccccCCCCeeeeEec---CCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMM----EFFNQQMHLSGLAQAAGNPVLACQIN---LDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~----~~F~~~G~~~~~~~~~~~~i~~~~~~---~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
...+.+++|||+|||+++|+++|+ ++|+.|| .|.++++. +.||||||+|.+.++|.+|+ .|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G-----------~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l 72 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFG-----------QILDILVSRSLKMRGQAFVIFKEVSSATNALRSM 72 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccC-----------CeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 445778999999999999999976 8999999 66666654 46899999999999999999 99
Q ss_pred CCCeecCceEEEeCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDY 130 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~ 130 (231)
||..|.|+.|+|.+++..
T Consensus 73 ~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 73 QGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred cCCeeCCcEEEEEEeccC
Confidence 999999999999977543
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=2.6e-22 Score=163.61 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=102.4
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 45 QARRLYVGNIP-FGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 45 ~~r~lfVgNLp-~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
++++|||+||+ +.+|+++|+++|+.|| .|.++++.++ ||||||+|.+.++|.+|| .|||..|.|+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G-----------~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG-----------NVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTS-----------CEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC-----------CeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 46799999999 8999999999999999 8999988775 799999999999999999 99999999999
Q ss_pred EEEeCCCCCCCCCCC----CCCCc----------ccCCCC--cccCcCCCCCCcEEEcCCCCCCCHH-------------
Q psy2204 122 LKIRRPHDYQPTPGV----TDNAA----------VAVPAG--VISTVVPDSPHKIFIGGLPNYLNED------------- 172 (231)
Q Consensus 122 i~V~~~~~~~~~~~~----~~~~~----------~~~~~~--~~~~~~~~~~~~ifV~nLp~~~tee------------- 172 (231)
|+|.+++.....+.. ..... ...... ..........++|||+|||+++|++
T Consensus 72 l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 72 MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 999987643211110 00000 000000 0000112335789999999999998
Q ss_pred ----------------------------HHHHHhCCCeeCCe----EEEEEEe
Q psy2204 173 ----------------------------QAIAGLNGMQLGDK----KLIVQRA 193 (231)
Q Consensus 173 ----------------------------~Ai~~lnG~~i~gr----~l~V~~a 193 (231)
+||..|||++|.|+ .+.|++|
T Consensus 152 ~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 152 PTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred eEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 78888888888775 5666664
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.89 E-value=3.3e-22 Score=162.42 Aligned_cols=131 Identities=22% Similarity=0.411 Sum_probs=106.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
.+++|||+|||+++|+++|+++|+.|| .|.++++.+ .+|||||+|.+.++|.+|+ .||+..+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 95 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFG-----------PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML 95 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGS-----------CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCC-----------CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee
Confidence 467999999999999999999999999 677776643 5799999999999999999 7999999
Q ss_pred cCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------
Q psy2204 118 KGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------- 172 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------- 172 (231)
.|+.|+|.++......... ...........++|||+|||.++|++
T Consensus 96 ~g~~l~v~~~~~~~~~~~~----------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 165 (216)
T 2qfj_A 96 GGRNIKVGRPSNIGQAQPI----------IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK 165 (216)
T ss_dssp C-CCCEEECCSCCGGGHHH----------HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC
T ss_pred CCeeEEEecCCCccccchh----------hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 9999999877643211000 00000012345899999999999998
Q ss_pred ----------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ----------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ----------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|+..|||..|+|+.|+|+++...
T Consensus 166 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 166 HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 899999999999999999999865
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.88 E-value=5.5e-22 Score=159.59 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=108.4
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 45 QARRLYVGNIPF-GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 45 ~~r~lfVgNLp~-~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
.+++|||+|||+ ++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G-----------~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYG-----------DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTC-----------CCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcC-----------CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 368999999999 999999999999999 7888888776 599999999999999999 89999999999
Q ss_pred EEEeCCCCCCCCCCCCCCC------------cccCC--CCcccCcCCCCCCcEEEcCCCCCCCHH---------------
Q psy2204 122 LKIRRPHDYQPTPGVTDNA------------AVAVP--AGVISTVVPDSPHKIFIGGLPNYLNED--------------- 172 (231)
Q Consensus 122 i~V~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~ifV~nLp~~~tee--------------- 172 (231)
|+|.+++............ ..... ............++|||+|||..++++
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 9999776432111000000 00000 000001112346899999999999998
Q ss_pred ----------------------HHHHHhCCCeeC-CeEEEEEEeecC
Q psy2204 173 ----------------------QAIAGLNGMQLG-DKKLIVQRASVG 196 (231)
Q Consensus 173 ----------------------~Ai~~lnG~~i~-gr~l~V~~a~~~ 196 (231)
+|+..|||..++ |+.|+|+|+.+.
T Consensus 151 v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 151 FKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 899999999999 999999999753
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.88 E-value=1.5e-22 Score=158.97 Aligned_cols=119 Identities=20% Similarity=0.349 Sum_probs=98.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec--------CCCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN--------LDKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~--------~~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
++++|||+|||+++|+++|+++|++|| .|.++++. +++|||||+|.+.++|.+|+ .||+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 70 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG-----------AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 70 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc
Confidence 568999999999999999999999999 66666664 45799999999999999999 99998
Q ss_pred eec---CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------
Q psy2204 116 NFK---GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------- 172 (231)
Q Consensus 116 ~l~---gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------- 172 (231)
.+. ++.+.+.++...... ....++|||+|||+++|++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 71 KVLPGMHHPIQMKPADSEKNN--------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp CCCTTCSSCCEEEECGGGCCS--------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred EEccCCccceEEccccccccc--------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 876 567777765432211 1234789999999999998
Q ss_pred --------------------HHHHHhCCCeeC---CeEEEEEEee
Q psy2204 173 --------------------QAIAGLNGMQLG---DKKLIVQRAS 194 (231)
Q Consensus 173 --------------------~Ai~~lnG~~i~---gr~l~V~~a~ 194 (231)
+|+..|||..+. ++.|+|+||.
T Consensus 131 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 131 PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 899999998876 3999999974
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.86 E-value=2.8e-21 Score=163.88 Aligned_cols=115 Identities=22% Similarity=0.401 Sum_probs=104.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
+.+++|||+|||+++|+++|+++|+.|| |.++++.+++|||||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G------------i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i 87 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE------------LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLREREL 87 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC------------CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEE
Confidence 4678999999999999999999999997 677777899999999999999999999 999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH------------------------------
Q psy2204 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------------ 172 (231)
Q Consensus 123 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------------ 172 (231)
.|.+.. ..++|||+|||+++|++
T Consensus 88 ~v~~~~---------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~a 140 (284)
T 3smz_A 88 SVQLQP---------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG 140 (284)
T ss_dssp EEEECC---------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE
T ss_pred EEEecC---------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEE
Confidence 998642 12689999999999998
Q ss_pred -----------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 173 -----------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 173 -----------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
+|+..|||..+.|+.|+|.++....
T Consensus 141 fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 141 FAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred EEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 8899999999999999999998654
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.86 E-value=1.8e-22 Score=157.64 Aligned_cols=119 Identities=20% Similarity=0.408 Sum_probs=99.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
+++++|||+|||+++|+++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+|+. ++..+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~ 68 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYG-----------TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHIL 68 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTC-----------CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-ccccc
Confidence 3578999999999999999999999999 677776654 46999999999999999995 36789
Q ss_pred cCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-------------------------
Q psy2204 118 KGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------------------------- 172 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------------------------- 172 (231)
.|+.|.|.++..... ....++|||+|||+++|++
T Consensus 69 ~g~~i~v~~~~~~~~---------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~ 127 (167)
T 2cjk_A 69 DGKVIDPKRAIPRDE---------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQ 127 (167)
T ss_dssp TTEECCCEECCCHHH---------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSST
T ss_pred CCeEcccccccchhh---------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCc
Confidence 999998887653210 1124689999999999998
Q ss_pred ----------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 ----------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ----------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|++ +||..++|+.|+|++|.++
T Consensus 128 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 128 SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 6776 8999999999999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.86 E-value=3e-21 Score=162.45 Aligned_cols=119 Identities=24% Similarity=0.361 Sum_probs=105.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.......++|||+|||+++|+++|+++|+.|| .|.++++.+++|||||+|.+.++|.+|+ .+||..+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYG-----------EPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGC-----------CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 34445678999999999999999999999999 8899999999999999999999999999 89999999
Q ss_pred CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--------------------------
Q psy2204 119 GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-------------------------- 172 (231)
Q Consensus 119 gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-------------------------- 172 (231)
|+.|.|.++.+ .++|||+|||+.+|++
T Consensus 85 g~~l~v~~a~~---------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~ 137 (261)
T 3sde_A 85 SRPLRIRFATH---------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRAT 137 (261)
T ss_dssp TEECEEEECCC---------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEE
T ss_pred CceeEeeeccc---------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcC
Confidence 99999997652 3689999999999998
Q ss_pred --------------HHHHHhC-CCeeC---CeEEEEEEeecC
Q psy2204 173 --------------QAIAGLN-GMQLG---DKKLIVQRASVG 196 (231)
Q Consensus 173 --------------~Ai~~ln-G~~i~---gr~l~V~~a~~~ 196 (231)
+|+..|| |..+. +|.|+|.++...
T Consensus 138 g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 138 GKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 8999995 55555 999999999754
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.86 E-value=2e-21 Score=164.76 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=105.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
..++|||+|||+++|+++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+|+ .|||..+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-----------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFG-----------SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcC-----------CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 457999999999999999999999999 666665543 3689999999999999999 9999999
Q ss_pred cCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCC-CHH------------------------
Q psy2204 118 KGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL-NED------------------------ 172 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~-tee------------------------ 172 (231)
.|+.|.|.++....... .....++|||+|||.++ |++
T Consensus 163 ~g~~i~v~~a~~~~~~~------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~ 224 (284)
T 3smz_A 163 GPRTLYVHWTDAGQLTP------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQ 224 (284)
T ss_dssp TTEECEEEECCGGGCCT------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCC
T ss_pred CCcEEEEEECCCCCCCc------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCC
Confidence 99999999876432110 11235789999999995 766
Q ss_pred ----------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 ----------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 ----------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
+|+..|||..++|+.|+|+++.+...
T Consensus 225 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 225 LKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 89999999999999999999987644
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.85 E-value=4e-21 Score=163.54 Aligned_cols=120 Identities=16% Similarity=0.291 Sum_probs=102.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC----CCcEEEEEecCHHHHHHHHHhCCC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL----DKNFAFLEFRSIDETTQAMAFDGI 115 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~----~kg~aFV~F~~~~~a~~Al~lng~ 115 (231)
....+.+++|||+|||+++|+++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+|+++||.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~ 103 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCG-----------PIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHK 103 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCc
Confidence 34556789999999999999999999999999 788887766 479999999999999999999999
Q ss_pred eecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH-----------------------
Q psy2204 116 NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED----------------------- 172 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee----------------------- 172 (231)
.+.|+.|.|.+.. .++|||+|||++++++
T Consensus 104 ~~~g~~i~v~~~~----------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 104 VVGQNEIIVSHLT----------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp EETTEECEEEECC----------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred EeCCcEEEEEECC----------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 9999999998642 3789999999999988
Q ss_pred ------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 ------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 ------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
+|+..|||..+.|+.|+|+++.+...
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 88899999999999999999986543
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.83 E-value=2e-20 Score=159.15 Aligned_cols=131 Identities=17% Similarity=0.328 Sum_probs=101.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhh-hhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G-~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
..++|||+|||+++++++|+++|+.|| .|..+. +......+++|||||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~------i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIR------LPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE------CC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEE------EEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 578999999999999999999999999 655442 222222456899999999999999999 799999999999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCC-CCHH-----------------------------
Q psy2204 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNY-LNED----------------------------- 172 (231)
Q Consensus 123 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~-~tee----------------------------- 172 (231)
.|.++.+....... .......++|||+|||++ +|++
T Consensus 190 ~v~~a~~~~~~~~~--------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g 255 (292)
T 2ghp_A 190 VTKVSNPLEKSKRT--------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNC 255 (292)
T ss_dssp EEEECCCC-----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCE
T ss_pred EEEECCCCcccccc--------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCce
Confidence 99987644322110 011234589999999999 9988
Q ss_pred -------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 -------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 -------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|+ .|||..|+|+.|+|++|.++
T Consensus 256 ~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 256 CAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 788 99999999999999999854
No 22
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=133.73 Aligned_cols=98 Identities=21% Similarity=0.353 Sum_probs=79.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.|+.|+|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG-----------PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC-----------CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence 4899999999999999999999999 7888888775 999999999999999999 89999999999999
Q ss_pred eCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCC
Q psy2204 125 RRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLP 166 (231)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp 166 (231)
.+++.......... ........++|||+||+
T Consensus 70 ~~a~~~~~~~~~~~-----------~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 70 ELSTGMPRRSRFDR-----------PPARRKLLEVLFNGPLE 100 (101)
T ss_dssp EESSSCCCSSCCCS-----------CCCSCCCCSCCCSCCCC
T ss_pred EEccCCCCcccCCC-----------CCccccCCCceecCCCC
Confidence 98876542211111 00112345789999996
No 23
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=131.87 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC--CCeec
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD--GINFK 118 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln--g~~l~ 118 (231)
+...+++|||+|||+++|+++|+++|++|| .|.++++.++||||||+|++.++|.+|+ .++ +..|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG-----------~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFG-----------KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHC-----------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 345678999999999999999999999999 8999999999999999999999999999 776 47999
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
||+|+|.+++...
T Consensus 81 Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 81 GQPIYIQFSNHKE 93 (105)
T ss_dssp TEECCBCCCSSSS
T ss_pred CEEEEEEEcCCCC
Confidence 9999999887543
No 24
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-19 Score=130.49 Aligned_cols=75 Identities=20% Similarity=0.435 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
...++|||+|||+++++++|+++|++|| .|.++++.+++|||||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G-----------~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFG-----------FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTS-----------CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCC-----------CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4568999999999999999999999999 7888889899999999999999999999 999999999999
Q ss_pred EEeCCCC
Q psy2204 123 KIRRPHD 129 (231)
Q Consensus 123 ~V~~~~~ 129 (231)
+|.++++
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 9998764
No 25
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.81 E-value=1.6e-19 Score=126.63 Aligned_cols=85 Identities=80% Similarity=1.222 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
.++.++|||+|||+++++++|+++|++||.+.++...++..|.++++.++||||||+|.+.++|.+|+.|||..+.|+.|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 45678999999999999999999999997666555455567999999999999999999999999999999999999999
Q ss_pred EEeCC
Q psy2204 123 KIRRP 127 (231)
Q Consensus 123 ~V~~~ 127 (231)
+|+++
T Consensus 83 ~V~rp 87 (87)
T 2hzc_A 83 KIRRP 87 (87)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99864
No 26
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.3e-19 Score=125.88 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
.+..||||||++.+||++|+++|.+|| +|.++++..+||||||+|.+.++|.+|+ .||+..+.||+|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G-----------~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHG-----------PLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHS-----------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhC-----------CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 466899999999999999999999999 8999999999999999999999999999 9999999999999
Q ss_pred EeCCC
Q psy2204 124 IRRPH 128 (231)
Q Consensus 124 V~~~~ 128 (231)
|+.+.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99874
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=131.03 Aligned_cols=77 Identities=17% Similarity=0.404 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
..-+..+|||+|||+++|+++|+++|++|| .|.++++. ++||||||+|.+.++|.+|+ .|||
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G-----------~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIG-----------EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 344567999999999999999999999999 66666664 34689999999999999999 9999
Q ss_pred CeecCceEEEeCCCC
Q psy2204 115 INFKGQSLKIRRPHD 129 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~ 129 (231)
..|.||+|+|.++++
T Consensus 84 ~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 84 LRLQSKTIKVSYARP 98 (99)
T ss_dssp CEETTEECEEEECCB
T ss_pred CEECCEEEEEEEeeC
Confidence 999999999998763
No 28
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=130.16 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCe--e
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGIN--F 117 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~--l 117 (231)
....++++|||+|||+++|+++|+++|++|| .|.++++.++||||||+|++.++|.+|+ .||+.. +
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG-----------~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFG-----------PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccC-----------CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 3445788999999999999999999999999 8999999999999999999999999999 999876 7
Q ss_pred cCceEEEeCCCCC
Q psy2204 118 KGQSLKIRRPHDY 130 (231)
Q Consensus 118 ~gr~i~V~~~~~~ 130 (231)
.||+|+|.+++.+
T Consensus 85 ~Gr~i~V~~S~~k 97 (100)
T 3r27_A 85 AGHPAFVNYSTSQ 97 (100)
T ss_dssp TTEEEEEEECSCS
T ss_pred CCcEEEEEecccc
Confidence 8999999988743
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=126.89 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhh-hhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh-CCCeecCceE
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF-DGINFKGQSL 122 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G-~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l-ng~~l~gr~i 122 (231)
+++|||+|||+++|+++|+++|++|| .|.++. .+.+....++||||||+|.+.++|.+|| .+ ++..+.||+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~-----i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVR-----LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCC-----SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEE-----EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 57999999999999999999999999 454442 2233344566899999999999999999 66 5678999999
Q ss_pred EEeCCCCCC
Q psy2204 123 KIRRPHDYQ 131 (231)
Q Consensus 123 ~V~~~~~~~ 131 (231)
+|.++.+..
T Consensus 76 ~V~~a~~~~ 84 (91)
T 2lxi_A 76 SMHYSDPKP 84 (91)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999887543
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=129.26 Aligned_cols=86 Identities=15% Similarity=0.297 Sum_probs=69.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhh--hhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHL--SGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~--~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
+.......++|||+|||+++|+++|+++|++||.+ .++. .+.+....++||||||+|.+.++|.+|| .|||.
T Consensus 2 g~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~-----i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 2 GHHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIR-----LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEE-----CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CcccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEE-----EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 45566778999999999999999999999999942 2221 1223334566899999999999999999 99997
Q ss_pred ----eecCceEEEeCCCC
Q psy2204 116 ----NFKGQSLKIRRPHD 129 (231)
Q Consensus 116 ----~l~gr~i~V~~~~~ 129 (231)
.++||+|.|.+++.
T Consensus 77 ~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 77 HPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSCEEETTEEEEEEECCC
T ss_pred CCCceECCEEEEEEEccC
Confidence 58999999998864
No 31
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=130.34 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC--eec
Q psy2204 43 TRQARRLYVGNIPF-GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGI--NFK 118 (231)
Q Consensus 43 ~~~~r~lfVgNLp~-~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~--~l~ 118 (231)
..++++|||+|||+ ++|+++|+++|++|| .|.++++.++||||||+|++.++|.+|+ .||+. .|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG-----------~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFG-----------VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGS-----------CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcC-----------CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 44688999999999 999999999999999 8999999999999999999999999999 88864 599
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
||+|+|.+++.+.
T Consensus 81 Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 81 GKPVRVHLSQKYK 93 (102)
T ss_dssp TEECEEEEECCCT
T ss_pred CcEEEEEECCCCC
Confidence 9999999887543
No 32
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=124.58 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.....++++|||+|||+++|+++|+++|++|| .|.++++.+++|||||+|.+.++|.+|+ .||+..+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFG-----------SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTS-----------CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 33445678999999999999999999999999 8999999888999999999999999999 89999999
Q ss_pred --CceEEEeCCCCCC
Q psy2204 119 --GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 --gr~i~V~~~~~~~ 131 (231)
|+.|+|.++++..
T Consensus 80 ~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 80 GPDRRLRVDFAKSGP 94 (97)
T ss_dssp SSSCBCEEEECCCCC
T ss_pred CCCcEEEEEECCCCC
Confidence 9999999887543
No 33
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=122.91 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh-CCCee
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF-DGINF 117 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l-ng~~l 117 (231)
+......++|||+|||+++++++|+++|++|| .|.++++.+++|||||+|.+.++|.+|+ .| |+..+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G-----------~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFG-----------EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTS-----------CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCC-----------CEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 34456778999999999999999999999999 8999999999999999999999999999 78 99999
Q ss_pred cCceEEEeCCC
Q psy2204 118 KGQSLKIRRPH 128 (231)
Q Consensus 118 ~gr~i~V~~~~ 128 (231)
.|+.|+|.+++
T Consensus 75 ~g~~l~v~~ak 85 (85)
T 2ytc_A 75 NGRRLNVKWGR 85 (85)
T ss_dssp TTEECCEEECC
T ss_pred CCCEEEEEecC
Confidence 99999998764
No 34
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-19 Score=129.79 Aligned_cols=88 Identities=22% Similarity=0.423 Sum_probs=71.9
Q ss_pred hhcCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC----CcEEEEEecCHHHHH
Q psy2204 32 AAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNFAFLEFRSIDETT 107 (231)
Q Consensus 32 ~~~~~~~~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~----kg~aFV~F~~~~~a~ 107 (231)
+.+.+..........++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.
T Consensus 15 ~~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~~~kg~afV~f~~~~~A~ 83 (109)
T 2err_A 15 VPRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFG-----------KILDVEIIFNERGSKGFGFVTFENSADAD 83 (109)
T ss_dssp -------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTC-----------CCSCEEECCBTTBCTTEEEEECCCSHHHH
T ss_pred CCCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcC-----------CEEEEEEEECCCCCceEEEEEECCHHHHH
Confidence 3333445556667889999999999999999999999999 6666666544 899999999999999
Q ss_pred HHH-HhCCCeecCceEEEeCCCCC
Q psy2204 108 QAM-AFDGINFKGQSLKIRRPHDY 130 (231)
Q Consensus 108 ~Al-~lng~~l~gr~i~V~~~~~~ 130 (231)
+|+ .|||..+.|+.|+|.+++..
T Consensus 84 ~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 84 RAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHcCCCEECCEEEEEEECCCC
Confidence 999 89999999999999987643
No 35
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=127.49 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC--eec
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGI--NFK 118 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~--~l~ 118 (231)
...++++|||+|||+++++++|+++|++|| .|.++.+.++||||||+|.+.++|.+|+ .|++. .+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG-----------~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG-----------TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTS-----------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 345678999999999999999999999999 8999999889999999999999999999 78654 599
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
|++|+|.+++...
T Consensus 80 Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 80 GQQAFFNYSTSKR 92 (104)
T ss_dssp SSBCEEEECSSSS
T ss_pred CEEEEEEEccCcc
Confidence 9999999887543
No 36
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.2e-19 Score=131.21 Aligned_cols=78 Identities=19% Similarity=0.361 Sum_probs=68.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~l 112 (231)
.......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .|
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFG-----------NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSC-----------EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 34456778999999999999999999999999 666666643 4799999999999999999 89
Q ss_pred CCCeecCceEEEeCCC
Q psy2204 113 DGINFKGQSLKIRRPH 128 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~ 128 (231)
||..|.|+.|+|.+++
T Consensus 103 ~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 103 NGFQVGTKRLKVQLKK 118 (118)
T ss_dssp CCCEETTEECCEEEC-
T ss_pred CCCEECCEEEEEEecC
Confidence 9999999999998753
No 37
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=124.84 Aligned_cols=84 Identities=17% Similarity=0.420 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
....++|||+|||+++|+++|+++|+.||.+... .+.+....+++|||||+|.+.++|.+||+|||..+.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceE------EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 3457899999999999999999999999988762 5777788889999999999999999999999999999999
Q ss_pred EEeCCCCCCC
Q psy2204 123 KIRRPHDYQP 132 (231)
Q Consensus 123 ~V~~~~~~~~ 132 (231)
+|.+++....
T Consensus 88 ~V~~a~~~~~ 97 (101)
T 1fj7_A 88 KLEKPKGRDG 97 (101)
T ss_dssp EEECCSCCCC
T ss_pred EEEEcCCCCC
Confidence 9998876543
No 38
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.9e-19 Score=130.85 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC--CCe
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD--GIN 116 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln--g~~ 116 (231)
.....++++|||+|||+++|+++|+++|++|| .|.++++.++||||||+|++.++|.+|+ .++ +..
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG-----------~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG-----------KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTS-----------CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCce
Confidence 44556789999999999999999999999999 8888889888999999999999999999 787 468
Q ss_pred ecCceEEEeCCCCCC
Q psy2204 117 FKGQSLKIRRPHDYQ 131 (231)
Q Consensus 117 l~gr~i~V~~~~~~~ 131 (231)
|.|++|+|.+++...
T Consensus 94 l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 94 LRGQPIYIQFSNHKE 108 (119)
T ss_dssp BTTBCCEEEECSSSS
T ss_pred ECCeEEEEEEccCCC
Confidence 999999999887544
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=123.26 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~ln 113 (231)
.....+++|||+|||+++|+++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .||
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYG-----------PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTS-----------CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 3456788999999999999999999999999 6777777544 699999999999999999 999
Q ss_pred CCeecCceEEEeCCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQP 132 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~~ 132 (231)
|..|.|+.|+|.+++....
T Consensus 72 g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 72 GQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp TEESSSCEEEEEECCCCST
T ss_pred CCEECCcEEEEEEcCCCcc
Confidence 9999999999998876543
No 40
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=125.70 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh--CCCeec
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF--DGINFK 118 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l--ng~~l~ 118 (231)
...++++|||+|||+++|+++|+++|++|| .|.++.+.++||||||+|.+.++|.+|+ .| ++..+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG-----------~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFG-----------KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTS-----------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 335678999999999999999999999999 8999999999999999999999999999 66 578899
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
||+|+|.+++...
T Consensus 80 Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 80 NQPIYIQYSNHKE 92 (101)
T ss_dssp TEECEEEECSCSS
T ss_pred CcEEEEEEcCccc
Confidence 9999999887543
No 41
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=121.71 Aligned_cols=78 Identities=23% Similarity=0.475 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
......++|||+|||+++++++|+++|++|| .|.++++. |+||||+|.+.++|.+|+ .||+..+.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g 69 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYG-----------KVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHG 69 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSS-----------CEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 3445678999999999999999999999999 78888887 799999999999999999 999999999
Q ss_pred ceEEEeCCCCCC
Q psy2204 120 QSLKIRRPHDYQ 131 (231)
Q Consensus 120 r~i~V~~~~~~~ 131 (231)
+.|+|.+++...
T Consensus 70 ~~l~v~~a~~~~ 81 (90)
T 2dnq_A 70 VNINVEASKNKS 81 (90)
T ss_dssp CBCEEECSSCCC
T ss_pred cEEEEEECCCCC
Confidence 999999887654
No 42
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=126.21 Aligned_cols=80 Identities=28% Similarity=0.455 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
....+.++|||+|||+++|+++|+++|++|| .|.++++.++||||||+|.+.++|.+|+ .|||..|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYG-----------KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTC-----------CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcC-----------CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3445678999999999999999999999999 8889999999999999999999999999 999999999
Q ss_pred ceEEEeCCCCCC
Q psy2204 120 QSLKIRRPHDYQ 131 (231)
Q Consensus 120 r~i~V~~~~~~~ 131 (231)
+.|+|.+++...
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpj_A 79 KQLRVRFACHSA 90 (99)
T ss_dssp BCCEEEESSCCS
T ss_pred ceEEEEEcCCCC
Confidence 999999887543
No 43
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-18 Score=122.38 Aligned_cols=81 Identities=27% Similarity=0.482 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC----CCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL----DKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~----~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.......++|||+|||+++++++|+++|+.|| .|.++++.+ .+|||||+|.+.++|.+|+ .||+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIG-----------PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 77 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHS-----------CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcC-----------CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 34456779999999999999999999999999 777777765 4799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..|.|+.|+|.+++...
T Consensus 78 ~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 78 RKILGKEVKVNWATTPS 94 (103)
T ss_dssp EEETTEEEEEEECCCTT
T ss_pred CCcCCCeEEEEECCCCc
Confidence 99999999999887543
No 44
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=124.35 Aligned_cols=77 Identities=18% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i 122 (231)
...++|||+|||+++++++|+++|+.|| .|.++++.+++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFG-----------QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHS-----------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4578999999999999999999999999 8999999999999999999999999999 999999999999
Q ss_pred EEeCCCCCC
Q psy2204 123 KIRRPHDYQ 131 (231)
Q Consensus 123 ~V~~~~~~~ 131 (231)
+|.+++...
T Consensus 92 ~v~~a~~~~ 100 (109)
T 1x4g_A 92 KCYWGKESP 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999887644
No 45
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=122.45 Aligned_cols=76 Identities=12% Similarity=0.238 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHHhhhhhhccccCCCCeeeeEecCC---CcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMM----EFFNQQMHLSGLAQAAGNPVLACQINLD---KNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~----~~F~~~G~~~~~~~~~~~~i~~~~~~~~---kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
...++|||+|||+++++++|+ ++|++|| .|.++++.++ ||||||+|.+.++|.+|+ .|||.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G-----------~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHG-----------KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHS-----------CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccC-----------cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC
Confidence 456799999999999999999 9999999 7888888765 899999999999999999 89999
Q ss_pred eecCceEEEeCCCCC
Q psy2204 116 NFKGQSLKIRRPHDY 130 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~ 130 (231)
.+.||.|+|.++++.
T Consensus 76 ~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 76 KIGSKKILVSLATGA 90 (96)
T ss_dssp EETTEEEEEEECCCS
T ss_pred EECCeEEEEEEcCCC
Confidence 999999999988754
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=122.98 Aligned_cols=81 Identities=23% Similarity=0.462 Sum_probs=72.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC----CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~----kg~aFV~F~~~~~a~~Al-~lng 114 (231)
+......++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .||+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-----------~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFG-----------KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 77 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTS-----------CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 44556779999999999999999999999999 7888877655 799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..|.|+.|+|.+++...
T Consensus 78 ~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 78 TVVEGRKIEVNNATARV 94 (103)
T ss_dssp CEETTEECEEEECCSSC
T ss_pred CEECCEEEEEEEcccCC
Confidence 99999999999887654
No 47
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=124.17 Aligned_cols=79 Identities=16% Similarity=0.296 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC-
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG- 119 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g- 119 (231)
..+..++|||+|||+++|+++|+++|++|| .|.++++.++ |||||+|.+.++|.+|| .||+..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAG-----------DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGS-----------CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 345678999999999999999999999999 8999988877 99999999999999999 899999999
Q ss_pred ----ceEEEeCCCCCCC
Q psy2204 120 ----QSLKIRRPHDYQP 132 (231)
Q Consensus 120 ----r~i~V~~~~~~~~ 132 (231)
+.|+|.++++...
T Consensus 79 ~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 79 EGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TSCEEEEEEEESSCCSC
T ss_pred cCcceEEEEEeCCCCCC
Confidence 9999998876543
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=127.86 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.+.++|||+||++++++++|+++|++|| .|.++++ .++||||||+|.+.++|.+|+ .|||..
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G-----------~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~ 72 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYG-----------EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS 72 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcC-----------CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3568999999999999999999999999 6666665 345799999999999999999 999999
Q ss_pred ecCceEEEeCCCC
Q psy2204 117 FKGQSLKIRRPHD 129 (231)
Q Consensus 117 l~gr~i~V~~~~~ 129 (231)
|.||.|+|.++..
T Consensus 73 ~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 73 VMGNIIHAQLDIK 85 (110)
T ss_dssp ETTEECEEEECST
T ss_pred ECCeEEEEEECCC
Confidence 9999999997753
No 49
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=4.4e-19 Score=138.50 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhh--hhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQM--HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G--~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
...++|||||||+++|+++|+++|+.|| .|.++. .+.+...++.||||||+|.+.++|.+|| .|||..|.||
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~-----i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELK-----FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEE-----EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEE-----EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3668999999999999999999999999 444331 1122223455799999999999999999 9999999999
Q ss_pred eEEEeCCC
Q psy2204 121 SLKIRRPH 128 (231)
Q Consensus 121 ~i~V~~~~ 128 (231)
.|+|.++.
T Consensus 128 ~l~V~~a~ 135 (156)
T 3n9u_C 128 KVDVRPAT 135 (156)
T ss_dssp ECEEEECC
T ss_pred EeEEEEcC
Confidence 99999775
No 50
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.4e-18 Score=120.03 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
..+.++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .|||.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFG-----------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGS-----------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccC-----------CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 45678999999999999999999999999 677776643 4899999999999999999 99999
Q ss_pred eecCceEEEeCCC
Q psy2204 116 NFKGQSLKIRRPH 128 (231)
Q Consensus 116 ~l~gr~i~V~~~~ 128 (231)
.+.|+.|+|.+++
T Consensus 73 ~~~g~~l~v~~ak 85 (85)
T 3mdf_A 73 ELFGRTIRVNLAK 85 (85)
T ss_dssp EETTEECEEEECC
T ss_pred EECCcEEEEEEcC
Confidence 9999999998764
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=123.54 Aligned_cols=80 Identities=19% Similarity=0.397 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-------CcEEEEEecCHHHHHHHH-Hh
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-------KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-------kg~aFV~F~~~~~a~~Al-~l 112 (231)
......++|||+|||+++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFG-----------ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccC-----------CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 3455778999999999999999999999999 7777777655 799999999999999999 89
Q ss_pred -CCCeecCceEEEeCCCCCC
Q psy2204 113 -DGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 -ng~~l~gr~i~V~~~~~~~ 131 (231)
|+..|.|+.|+|.+++...
T Consensus 79 ~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 79 CHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HTCCBSSSCBCEEEECCCCC
T ss_pred ccCCeECCCEEEEEeCCCCC
Confidence 9999999999999887654
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-18 Score=124.07 Aligned_cols=81 Identities=22% Similarity=0.462 Sum_probs=71.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC---CcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD---KNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~---kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
.......++|||+|||+++|+++|+++|++|| .|.++++..+ ++||||+|.+.++|.+|| .||+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYG-----------AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 34455678999999999999999999999999 6777776543 689999999999999999 99999
Q ss_pred eecCceEEEeCCCCCC
Q psy2204 116 NFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~ 131 (231)
.|.|+.|+|.+++...
T Consensus 85 ~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 85 DYDGYRLRVEFPRSGR 100 (109)
T ss_dssp EETTEECEEECCCCCC
T ss_pred EECCeEEEEEEcccCC
Confidence 9999999999887654
No 53
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=122.97 Aligned_cols=80 Identities=18% Similarity=0.435 Sum_probs=68.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCC-Ceec
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDG-INFK 118 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng-~~l~ 118 (231)
......++|||+|||+++|+++|+++|++||.+ |..+.+ .++|||||+|.+.++|.+|+ .||| ..+.
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v----------v~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLP----------LAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCC----------CSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCc----------eEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 344567899999999999999999999999931 333333 46899999999999999999 8999 9999
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
|+.|+|.++++..
T Consensus 72 g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 72 GKIMEVDYSVSKK 84 (93)
T ss_dssp TEECEEEECCCCC
T ss_pred CEEEEEEEccCcc
Confidence 9999999887654
No 54
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=1.9e-18 Score=122.41 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=70.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC----CCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL----DKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~----~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
+......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .||+
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-----------~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 70 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECG-----------HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 70 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTS-----------CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 34456778999999999999999999999999 666666543 4799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..+.|+.|+|.++++..
T Consensus 71 ~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 71 MKLSGREIDVRIDRNAS 87 (92)
T ss_dssp CCBTTBCCCCEECSCCS
T ss_pred CEECCcEEEEEEcCCCC
Confidence 99999999999887543
No 55
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=5.6e-18 Score=129.15 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=72.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~l 112 (231)
.......++|||+|||+++++++|+++|+.|| .|.++++.+ .+|||||+|.+.++|.+|+ .|
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 104 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYG-----------PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHS-----------CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 34556779999999999999999999999999 676666643 3789999999999999999 89
Q ss_pred CCCeecCceEEEeCCCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQPT 133 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~~~ 133 (231)
||..|.|+.|+|.+++.....
T Consensus 105 ~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 105 NGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp TTEECSSCEEEEEESSCCCCC
T ss_pred CCCEECCeEEEEEECCCCCCC
Confidence 999999999999988765544
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=123.08 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=70.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
......++|||+|||+++++++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|+ .||
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFG-----------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTS-----------CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccC-----------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 4456789999999999999999999999999 56666664 34899999999999999999 999
Q ss_pred CCeecCceEEEeCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~ 131 (231)
+..|.|+.|+|.++++..
T Consensus 76 g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 76 ESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp TEEETTEEEEEEECCCCC
T ss_pred CCEECCcEEEEEeCCCCC
Confidence 999999999999887654
No 57
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=121.42 Aligned_cols=80 Identities=20% Similarity=0.423 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~lng 114 (231)
......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+||.||+
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~ 73 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFG-----------VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 73 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSS-----------CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCC
Confidence 3445778999999999999999999999999 777777754 47999999999999999999999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..|.|+.|+|.++++..
T Consensus 74 ~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 74 HDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp CBSSSCBCEEEECCCCC
T ss_pred CEECCeEEEEEECCCCc
Confidence 99999999999887554
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=122.19 Aligned_cols=77 Identities=22% Similarity=0.524 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec---------CCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN---------LDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~---------~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
.++++|||+|||+++++++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|+ .||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVG-----------AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 4678999999999999999999999999 56665554 44689999999999999999 899
Q ss_pred CCeecCceEEEeCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~ 131 (231)
|..|.|+.|+|.+++...
T Consensus 72 g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 72 GHTVDGHKLEVRISERAT 89 (98)
T ss_dssp TCEETTEECEEECSSCSS
T ss_pred CCeeCCeEEEEEEccCCC
Confidence 999999999999887544
No 59
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=5.1e-18 Score=121.94 Aligned_cols=76 Identities=18% Similarity=0.403 Sum_probs=68.6
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 41 TITRQARRLYVGNIPF-GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~-~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.....+++|||+|||+ ++++++|+++|++|| .|.++++. +|||||+|.+.++|.+|+ .|||..+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G-----------~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYG-----------HIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGS-----------CEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcC-----------CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3445678999999998 999999999999999 78888884 899999999999999999 89999999
Q ss_pred CceEEEeCCCC
Q psy2204 119 GQSLKIRRPHD 129 (231)
Q Consensus 119 gr~i~V~~~~~ 129 (231)
|+.|+|.+++.
T Consensus 84 g~~l~V~~a~~ 94 (97)
T 2xnq_A 84 GKKLILEVSSS 94 (97)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEecCC
Confidence 99999998764
No 60
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=3.6e-18 Score=125.23 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=70.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
......+++|||+|||+++|+++|+++|++|| .|.++++. +|||||+|.+.++|.+|+ .|||..+.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-----------~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFG-----------PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTS-----------CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 44556779999999999999999999999999 77777777 899999999999999999 89999999
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
|+.|.|.+++...
T Consensus 92 g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 92 NQPLEVVYSKLPA 104 (108)
T ss_dssp TEECEEESCSCCC
T ss_pred CeEEEEEEecCCC
Confidence 9999999887543
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=122.25 Aligned_cols=82 Identities=17% Similarity=0.339 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
+......++|||+|||+++|+++|+++|+.|| .|.++++. +.+|||||+|.+.++|.+|| .|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFG-----------DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 34456788999999999999999999999999 67777775 44799999999999999999 99
Q ss_pred C------CCeecCceEEEeCCCCCCC
Q psy2204 113 D------GINFKGQSLKIRRPHDYQP 132 (231)
Q Consensus 113 n------g~~l~gr~i~V~~~~~~~~ 132 (231)
| +..|.|+.|+|.++.+...
T Consensus 78 ~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 78 SLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred ccccccCCcEEcCEEEEEEECCCCcc
Confidence 9 9999999999998876543
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=122.53 Aligned_cols=81 Identities=21% Similarity=0.504 Sum_probs=71.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~l 112 (231)
.....+.++|||+|||+++++++|+++|+.|| .|.++++.+ .+|||||+|.+.++|.+|+ .|
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYG-----------QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 74 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHS-----------CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 34556789999999999999999999999999 666666654 4789999999999999999 99
Q ss_pred CCCeecCceEEEeCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~ 131 (231)
|+..|.|+.|+|.+++...
T Consensus 75 ~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 75 NGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp TTCCTTSCCCEEEEEECCC
T ss_pred CCCEECCeEEEEEECCCCC
Confidence 9999999999999876543
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=5.2e-18 Score=121.34 Aligned_cols=75 Identities=27% Similarity=0.612 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
++++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 69 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVG-----------PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 69 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcC-----------CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 468999999999999999999999999 6777777543 799999999999999999 9999999
Q ss_pred cCceEEEeCCCCC
Q psy2204 118 KGQSLKIRRPHDY 130 (231)
Q Consensus 118 ~gr~i~V~~~~~~ 130 (231)
.|+.|+|.++++.
T Consensus 70 ~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 70 GSRFLKCGYSSNS 82 (96)
T ss_dssp TTEECEEEECSCS
T ss_pred CCeEEEEEEcCCC
Confidence 9999999988754
No 64
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=4.8e-18 Score=125.48 Aligned_cols=81 Identities=14% Similarity=0.333 Sum_probs=69.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~l 112 (231)
.......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|| .|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFG-----------NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGS-----------CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 33445678999999999999999999999999 565555543 3589999999999999999 99
Q ss_pred CCCeecCceEEEeCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~ 131 (231)
|+..|.|+.|+|.++++..
T Consensus 88 ~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 88 NGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp TTCEETTEECEEECCCCSC
T ss_pred CCCEECCEEEEEEEcCCCC
Confidence 9999999999999887654
No 65
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-17 Score=118.93 Aligned_cols=80 Identities=20% Similarity=0.382 Sum_probs=71.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHh--hhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQ--MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~--G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
........++|||+|||+++|+++|+++|++| | .|.++++. +|||||+|.+.++|.+|+ .|||.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g-----------~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~ 74 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG-----------AVERVKKI--RDYAFVHFSNREDAVEAMKALNGK 74 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTT-----------CEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCc-----------ceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCC
Confidence 34455678999999999999999999999999 7 78877765 789999999999999999 89999
Q ss_pred eecCceEEEeCCCCCC
Q psy2204 116 NFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~ 131 (231)
.|.|+.|+|.++++..
T Consensus 75 ~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 75 VLDGSPIEVTLAKPVD 90 (99)
T ss_dssp EETTEEEEEECCCCCC
T ss_pred EeCCcEEEEEECCCCC
Confidence 9999999999887644
No 66
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=9.1e-18 Score=123.89 Aligned_cols=83 Identities=16% Similarity=0.301 Sum_probs=72.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~l 112 (231)
.......++|||+|||+++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|| .|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG-----------RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 44556788999999999999999999999999 6777776544 689999999999999999 89
Q ss_pred CCCeecCceEEEeCCCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQPT 133 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~~~ 133 (231)
||..|.|+.|+|.+++.....
T Consensus 78 ~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 78 GGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp TTCEETTEECEEEESSCCCCC
T ss_pred CCCEECCEEEEEEEccCCCCC
Confidence 999999999999988765443
No 67
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=127.35 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
.+..++|||+|||+++++++|+++|++|| .|.++.+.++++||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-----------~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFG-----------SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 34568999999999999999999999999 8999999999999999999999999999 99999999999
Q ss_pred EEEeCCCCC
Q psy2204 122 LKIRRPHDY 130 (231)
Q Consensus 122 i~V~~~~~~ 130 (231)
|+|.++...
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999987643
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=118.85 Aligned_cols=74 Identities=24% Similarity=0.465 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-------CCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-------DKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-------~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.+++|||+|||+++|+++|+++|++|| .|.++++.. .+|||||+|.+.++|.+|+ .|||..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYG-----------KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS-----------CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 468999999999999999999999999 677766632 5899999999999999999 899999
Q ss_pred ecCceEEEeCCCC
Q psy2204 117 FKGQSLKIRRPHD 129 (231)
Q Consensus 117 l~gr~i~V~~~~~ 129 (231)
+.|+.|+|.++.+
T Consensus 72 ~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 72 IDGQEITATAVLA 84 (88)
T ss_dssp ETTEECEEEEECC
T ss_pred ECCeEEEEEECCC
Confidence 9999999997764
No 69
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=120.85 Aligned_cols=77 Identities=19% Similarity=0.390 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeee-EecC------CCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC-QINL------DKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~-~~~~------~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
..+++|||+|||+++++++|+++|++|| .|.++ ++.+ .+|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFG-----------VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTS-----------CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 3578999999999999999999999999 55555 4544 4799999999999999999 79999
Q ss_pred eecCceEEEeCCCCCC
Q psy2204 116 NFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~ 131 (231)
.+.|+.|+|.++++..
T Consensus 72 ~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 72 YLCNRPITVSYAFKKD 87 (96)
T ss_dssp EETTEECEEEESCCCC
T ss_pred EECCEEEEEEEecccC
Confidence 9999999999887554
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=5.1e-18 Score=123.16 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng 114 (231)
......++|||+|||+++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|| .|||
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-----------VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 3445678999999999999999999999999 6777666554 799999999999999999 8999
Q ss_pred CeecC---ceEEEeCCCCCC
Q psy2204 115 INFKG---QSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~g---r~i~V~~~~~~~ 131 (231)
..+.| +.|+|.+++...
T Consensus 79 ~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 79 SQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp CCCCTTCSSCCEEEESCSSC
T ss_pred CccCCCCCccEEEEECccCc
Confidence 99998 999999887544
No 71
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=121.36 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=71.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-Hh
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~l 112 (231)
........++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHG-----------TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 344556778999999999999999999999999 6777766543 599999999999999999 99
Q ss_pred CCCeecCceEEEeCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~ 131 (231)
|+..+.|+.|+|.++++..
T Consensus 79 ~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 79 DGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp TTEESSSCEEEEEECCCCS
T ss_pred CCCEECCEEEEEEECCCCC
Confidence 9999999999999887543
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=121.77 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=68.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCee-eeEecCC------CcEEEEEecCHHHHHHHH-Hh
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVL-ACQINLD------KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~-~~~~~~~------kg~aFV~F~~~~~a~~Al-~l 112 (231)
.....+++|||+|||+++++++|+++|++|| .|. ++++.++ +|||||+|.+.++|.+|+ .|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMG-----------ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTT-----------CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhC-----------CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 3455789999999999999999999999999 566 6666443 599999999999999999 89
Q ss_pred CCCeecCce----EEEeCCCCC
Q psy2204 113 DGINFKGQS----LKIRRPHDY 130 (231)
Q Consensus 113 ng~~l~gr~----i~V~~~~~~ 130 (231)
||..+.|+. |+|.+++..
T Consensus 73 ~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 73 NGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp TTSEESSCSSCEECCEEETTCC
T ss_pred cCCccCCCCcceeEEEeecCCC
Confidence 999999999 999988754
No 73
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=2.3e-17 Score=119.47 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=70.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
......++|||+|||+++|+++|+++|++|| .|.++++. ++||||+|.+.++|.+|+ .||+..|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-----------~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFG-----------KLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHS-----------CEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 3445678999999999999999999999999 78888877 679999999999999999 899999999
Q ss_pred ceEEEeCCCCCCC
Q psy2204 120 QSLKIRRPHDYQP 132 (231)
Q Consensus 120 r~i~V~~~~~~~~ 132 (231)
+.|+|.+++....
T Consensus 73 ~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 73 ENIEIVFAKPPDQ 85 (103)
T ss_dssp EEEEEEECCCCCC
T ss_pred CEEEEEEcCCCcc
Confidence 9999998876543
No 74
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=4e-18 Score=118.36 Aligned_cols=74 Identities=23% Similarity=0.512 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 46 ~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
+.+|||+|||+++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G-----------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFP-----------SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTST-----------TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 35899999999999999999999999 6777766544 799999999999999999 89999999
Q ss_pred CceEEEeCCCCC
Q psy2204 119 GQSLKIRRPHDY 130 (231)
Q Consensus 119 gr~i~V~~~~~~ 130 (231)
|+.|+|.++++.
T Consensus 70 g~~l~v~~a~~~ 81 (83)
T 3md1_A 70 GRPLRINWAAKL 81 (83)
T ss_dssp TEECEEEECCCC
T ss_pred CcEEEEEecCcC
Confidence 999999988753
No 75
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=121.88 Aligned_cols=77 Identities=27% Similarity=0.521 Sum_probs=68.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng 114 (231)
......++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .||+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G-----------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAG-----------PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG 79 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 3445678999999999999999999999999 6777777544 699999999999999999 8999
Q ss_pred CeecCceEEEeCCC
Q psy2204 115 INFKGQSLKIRRPH 128 (231)
Q Consensus 115 ~~l~gr~i~V~~~~ 128 (231)
..+.|+.|+|.+++
T Consensus 80 ~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 80 IRLYGRPINVSGPS 93 (95)
T ss_dssp CEETTEECEEECCC
T ss_pred CEECCCEEEEEEcC
Confidence 99999999999876
No 76
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=119.57 Aligned_cols=77 Identities=19% Similarity=0.430 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
..+++|||+|||+++++++|+++|++|| .|.++++.+ ++|||||+|.+.++|.+|+ .||+..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-----------~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFG-----------KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 71 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 4568999999999999999999999999 677766654 4789999999999999999 899999
Q ss_pred ecCceEEEeCCCCCC
Q psy2204 117 FKGQSLKIRRPHDYQ 131 (231)
Q Consensus 117 l~gr~i~V~~~~~~~ 131 (231)
+.|+.|+|.++++..
T Consensus 72 ~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 72 LAGRPMRVGHVTERL 86 (95)
T ss_dssp SSSSCCEEEESSCCC
T ss_pred eCCcEEEEEEccccc
Confidence 999999999887654
No 77
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=120.02 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=68.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
......++|||+|||+++++++|+++|++|| .|.++++.+ ++|||||+|.+.++|.+|+ .||
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-----------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYG-----------KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTS-----------CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 3445678999999999999999999999999 677777754 4789999999999999999 999
Q ss_pred CCeecCceEEEeCCC
Q psy2204 114 GINFKGQSLKIRRPH 128 (231)
Q Consensus 114 g~~l~gr~i~V~~~~ 128 (231)
+..|.|++|+|.+++
T Consensus 80 g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 80 NKQLFGRVIKASIAI 94 (94)
T ss_dssp TEEETTEEEEEEECC
T ss_pred CCeeCCcEEEEEecC
Confidence 999999999998764
No 78
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=123.07 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
....+++|||+|||+++|+++|+++|+.||.|..+. ...+....+++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~-----~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP-----IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC-----CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE-----EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999775442 2233345677899999999999999999 8999999999
Q ss_pred eEEEeCCCCCC
Q psy2204 121 SLKIRRPHDYQ 131 (231)
Q Consensus 121 ~i~V~~~~~~~ 131 (231)
.|+|.+++...
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 99999887654
No 79
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.1e-19 Score=129.41 Aligned_cols=78 Identities=14% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC--CCeec
Q psy2204 43 TRQARRLYVGNIPFG-VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD--GINFK 118 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~-~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln--g~~l~ 118 (231)
..++++|||+|||++ +|+++|+++|++|| .|.++++.++||||||+|.+.++|.+|+ .|| +..|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG-----------~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG-----------KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS-----------CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC-----------CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 456889999999998 99999999999999 8899999999999999999999999999 775 56699
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
||+|+|.+++.+.
T Consensus 91 Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 91 GRCVKVDLSEKYK 103 (112)
T ss_dssp SSCCEEEEECSCS
T ss_pred CEEEEEEECcccc
Confidence 9999999887543
No 80
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=116.73 Aligned_cols=77 Identities=21% Similarity=0.499 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
.....++|||+|||+++|+++|+++|++|| .|.++++. ++||||+|.+.++|.+|+ .|||..+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRG-----------RVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHS-----------CEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCC-----------CEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 345678999999999999999999999999 88888887 569999999999999999 8999999999
Q ss_pred eEEEeCCCCCC
Q psy2204 121 SLKIRRPHDYQ 131 (231)
Q Consensus 121 ~i~V~~~~~~~ 131 (231)
.|+|.+++...
T Consensus 72 ~l~v~~a~~~~ 82 (90)
T 2dnp_A 72 RINVELSTKGQ 82 (90)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEECCCCC
Confidence 99999887654
No 81
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=122.68 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
+......++|||+|||+++|+++|+++|++||.|.+.... ....+++. +.+|||||+|.+.++|.+|| .|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~---~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRT---GQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSS---CCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEcccc---CccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 3455678999999999999999999999999944310000 00034443 44799999999999999999 89
Q ss_pred CCCeecCceEEEeCCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQP 132 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~~ 132 (231)
||..|.|+.|+|.+++....
T Consensus 86 ~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 86 DGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TTCEETTEECEEECSSCCCC
T ss_pred CCCccCCCEEEEEECCCCCC
Confidence 99999999999998876543
No 82
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=119.37 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
...+++|||+|||+++|+++|+++|++||.|. ..+...+++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~----------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP----------LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC----------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE----------EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34578999999999999999999999999431 23334577999999999999999999 99999999999
Q ss_pred EEEeCCCCC
Q psy2204 122 LKIRRPHDY 130 (231)
Q Consensus 122 i~V~~~~~~ 130 (231)
|+|.++++.
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999988754
No 83
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.9e-17 Score=120.33 Aligned_cols=81 Identities=16% Similarity=0.314 Sum_probs=70.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~l 112 (231)
+......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .|
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG-----------KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 75 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHS-----------CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 34456778999999999999999999999999 666666644 4799999999999999999 89
Q ss_pred CCCee---cCceEEEeCCCCCC
Q psy2204 113 DGINF---KGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 ng~~l---~gr~i~V~~~~~~~ 131 (231)
|+..+ .|+.|+|.++....
T Consensus 76 ~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 76 HEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp TTTCCCTTCSSCCEEEECCCCS
T ss_pred cCCcccCCCCceEEEEECCccc
Confidence 99998 89999999887544
No 84
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=119.52 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.+.++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFG-----------RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 72 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcC-----------CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568999999999999999999999999 6777766543 689999999999999999 899999
Q ss_pred ecCceEEEeCCCC
Q psy2204 117 FKGQSLKIRRPHD 129 (231)
Q Consensus 117 l~gr~i~V~~~~~ 129 (231)
+.|+.|+|.+++.
T Consensus 73 ~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 73 LGGRQIRTNWATR 85 (87)
T ss_dssp ETTEECEEEEEC-
T ss_pred ECCeEEEEEecCC
Confidence 9999999998764
No 85
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.5e-18 Score=119.93 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=68.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
......++|||+|||+++++++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|+ .||
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-----------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYG-----------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTS-----------CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 3345678999999999999999999999999 67777664 34689999999999999999 899
Q ss_pred CCeecCceEEEeCCCC
Q psy2204 114 GINFKGQSLKIRRPHD 129 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~ 129 (231)
|..+.|++|+|.+++.
T Consensus 79 g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 79 GMELDGRRIRVSGPSS 94 (95)
T ss_dssp TEEETTEEEEEECCSC
T ss_pred CCEECCEEEEEEecCC
Confidence 9999999999998763
No 86
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=120.15 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCC-eeeeEec-------CCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNP-VLACQIN-------LDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~-i~~~~~~-------~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
+.+.++|||+|||+++|+++|+++|++|| . |.++.+. +++|||||+|.+.++|.+|+ .||
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G-----------~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVT-----------EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHS-----------TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhc-----------CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 34578999999999999999999999999 5 7777665 56899999999999999999 896
Q ss_pred --CCeecCceEEEeCCCCCC
Q psy2204 114 --GINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 114 --g~~l~gr~i~V~~~~~~~ 131 (231)
+..+.|+.|+|.++++..
T Consensus 74 ~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 74 PGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TCCSCBTTBCCEEEESCSSC
T ss_pred CCCceecCCeEEEEEcCCCC
Confidence 599999999999887654
No 87
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=124.07 Aligned_cols=78 Identities=17% Similarity=0.430 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
....++|||+|||+++|+++|+++|++|| .|.++++.. .+|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 72 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHG-----------PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKS 72 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSS-----------CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 35678999999999999999999999999 566666654 4699999999999999999 899999
Q ss_pred ecCceEEEeCCCCCC
Q psy2204 117 FKGQSLKIRRPHDYQ 131 (231)
Q Consensus 117 l~gr~i~V~~~~~~~ 131 (231)
|.|+.|+|.+++...
T Consensus 73 ~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 73 LHGKAIKVEQAKKPS 87 (116)
T ss_dssp CSSSBCEEEECCCSS
T ss_pred ECCEEEEEEECCCCC
Confidence 999999999887543
No 88
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=119.83 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAG-----------PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTS-----------CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 3445678999999999999999999999999 677766654 4689999999999999999 899
Q ss_pred CCeecCceEEEeCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~ 131 (231)
+..|.|+.|+|.+++...
T Consensus 79 g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 79 MIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp SCBCSSCBCEEEETTTTS
T ss_pred CCeECCeEEEEEECCCCC
Confidence 999999999999887543
No 89
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=122.09 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=70.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYG-----------RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 3445678999999999999999999999999 677776643 4799999999999999999 899
Q ss_pred CCeecCceEEEeCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~ 131 (231)
|..|.|+.|+|.+++...
T Consensus 77 g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 77 GAELDGRELRVQVARYGR 94 (103)
T ss_dssp SCCBTTBCCEEEECSSCC
T ss_pred CCEECCcEEEEEECCcCC
Confidence 999999999999887543
No 90
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=117.73 Aligned_cols=78 Identities=24% Similarity=0.517 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
......++|||+|||+++++++|+++|++|| .|.++++. ++||||+|.+.++|.+|+ .||+..+.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYG-----------PVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTS-----------CCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 3456778999999999999999999999999 78888887 569999999999999999 999999999
Q ss_pred ceEEEeCCCCCC
Q psy2204 120 QSLKIRRPHDYQ 131 (231)
Q Consensus 120 r~i~V~~~~~~~ 131 (231)
+.|+|.+++...
T Consensus 72 ~~l~V~~a~~~~ 83 (92)
T 2dgt_A 72 KRMHVQLSTSRL 83 (92)
T ss_dssp EEEEEEESSCCC
T ss_pred cEEEEEEccCCC
Confidence 999999887544
No 91
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=129.98 Aligned_cols=87 Identities=16% Similarity=0.310 Sum_probs=71.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhh--ccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~--~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
.+......++|||+|||+++|+++|+++|++||.|.. +. .+.+....++||||||+|.+. +|.+|+ .|||.
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~-----i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVR-----VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEE-----CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEE-----EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 3445567789999999999999999999999995533 21 223333456689999999999 999999 99999
Q ss_pred ----eecCceEEEeCCCCCC
Q psy2204 116 ----NFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 116 ----~l~gr~i~V~~~~~~~ 131 (231)
.+.||.|+|.++++..
T Consensus 90 ~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 90 HPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp CCSCCGGGCCCCCEECCCSC
T ss_pred CCCccCCCEEEEEEECCCCC
Confidence 9999999999887654
No 92
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=7.7e-19 Score=124.33 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=62.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhh--hhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQM--HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G--~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
.+|||+|||+++|+++|+++|++|| .+.++. .+.+...+++||||||+|.+.++|.+|+ .|||..+.||.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~-----i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK-----FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEE-----EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEE-----EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEE
Confidence 4899999999999999999999999 555432 1122224556899999999999999999 9999999999999
Q ss_pred EeCCCCC
Q psy2204 124 IRRPHDY 130 (231)
Q Consensus 124 V~~~~~~ 130 (231)
|.++.+.
T Consensus 77 V~~~~~~ 83 (90)
T 3p5t_L 77 VTPSNKL 83 (90)
T ss_dssp ECCC---
T ss_pred EEECCCC
Confidence 9988754
No 93
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=125.16 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHHhhhhhhccccCCCCeeeeEec---CCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMM----EFFNQQMHLSGLAQAAGNPVLACQIN---LDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~----~~F~~~G~~~~~~~~~~~~i~~~~~~---~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
..++++|||+|||+.+++++|+ ++|++|| .|.++.+. +.||||||+|.+.++|.+|+ .|||
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G-----------~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng 94 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQG-----------DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQG 94 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS-----------CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC-----------CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCC
Confidence 3457899999999999999876 6999999 66666663 56899999999999999999 9999
Q ss_pred CeecCceEEEeCCCCC
Q psy2204 115 INFKGQSLKIRRPHDY 130 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~ 130 (231)
..|.|++|+|.+++..
T Consensus 95 ~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 95 YPFQGNPLVITFSETP 110 (127)
T ss_dssp CCCTTSCCEEEECCCC
T ss_pred CEeCCCEEEEEEccCc
Confidence 9999999999988754
No 94
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=122.01 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng 114 (231)
...+..++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-----------~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAG-----------VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445678999999999999999999999999 6766666544 799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..|.|+.|+|.+++...
T Consensus 79 ~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 79 QLLFDRPMHVKMDERAL 95 (114)
T ss_dssp CEETTEECEEEECSCCC
T ss_pred CEeCCCEEEEEEcccCC
Confidence 99999999999876443
No 95
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.4e-18 Score=121.98 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec----CCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN----LDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~----~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.....++|||+|||+++|+++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|+ .||+..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFG-----------TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 79 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTS-----------CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCE
Confidence 445778999999999999999999999999 67776665 44899999999999999999 899999
Q ss_pred ecCceEEEeCCCCCCC
Q psy2204 117 FKGQSLKIRRPHDYQP 132 (231)
Q Consensus 117 l~gr~i~V~~~~~~~~ 132 (231)
|.|+.|+|.+++....
T Consensus 80 ~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 80 VATKPLYVALAQRKEE 95 (103)
T ss_dssp SSSSBCEEEECSSCCC
T ss_pred eCCcEEEEEEeccccc
Confidence 9999999998876543
No 96
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=120.65 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=66.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeee--------eEec------CCCcEEEEEecCHHHH
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLA--------CQIN------LDKNFAFLEFRSIDET 106 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~--------~~~~------~~kg~aFV~F~~~~~a 106 (231)
......++|||+|||+++++++|+++|++|| .|.+ +++. +.+|||||+|.+.++|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a 76 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIG-----------IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA 76 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTS-----------CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC-----------CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHH
Confidence 3445678999999999999999999999999 4444 4443 3378999999999999
Q ss_pred HHHH-HhCCCeecCceEEEeCCC
Q psy2204 107 TQAM-AFDGINFKGQSLKIRRPH 128 (231)
Q Consensus 107 ~~Al-~lng~~l~gr~i~V~~~~ 128 (231)
.+|+ .|||..+.|+.|+|.+++
T Consensus 77 ~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 77 KAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHhCCCEeCCcEEEEEecC
Confidence 9999 899999999999998763
No 97
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=123.03 Aligned_cols=75 Identities=19% Similarity=0.343 Sum_probs=69.0
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCee---
Q psy2204 44 RQARRLYV--GNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINF--- 117 (231)
Q Consensus 44 ~~~r~lfV--gNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l--- 117 (231)
.++++||| |||++++|+++|+++|++|| .|.++.+..+||||||+|.+.++|.+|+ .|||.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG-----------~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCG-----------LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHS-----------CEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 45789999 77999999999999999999 8888888888999999999999999999 9999998
Q ss_pred --cCceEEEeCCCC
Q psy2204 118 --KGQSLKIRRPHD 129 (231)
Q Consensus 118 --~gr~i~V~~~~~ 129 (231)
.|++|.|.+.+.
T Consensus 92 lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 92 LGQKITLYLNFVEK 105 (114)
T ss_dssp TSCEEECEEEEESC
T ss_pred cCCCcEEEEEeccc
Confidence 689999997763
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=7.6e-18 Score=118.14 Aligned_cols=76 Identities=14% Similarity=0.492 Sum_probs=66.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~lng 114 (231)
......++|||+|||+++++++|+++|++|| .|.++++.+ ++|||||+|.+.++|.+|+.+++
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFG-----------EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTS-----------CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 3456778999999999999999999999999 666666643 37899999999999999997799
Q ss_pred CeecCceEEEeCC
Q psy2204 115 INFKGQSLKIRRP 127 (231)
Q Consensus 115 ~~l~gr~i~V~~~ 127 (231)
..+.|+.|+|+++
T Consensus 75 ~~~~g~~i~v~~A 87 (87)
T 3s7r_A 75 HRLDGRVIDPKKA 87 (87)
T ss_dssp EEETTEEEEEEEC
T ss_pred CEECCEEEEEEeC
Confidence 9999999999853
No 99
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=9.6e-18 Score=122.88 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=70.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~l 112 (231)
+.....+++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 88 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG-----------RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTS-----------CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 33445678999999999999999999999999 676666643 3689999999999999999 89
Q ss_pred CCCeecCceEEEeCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDY 130 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~ 130 (231)
||..+.|+.|+|.+++++
T Consensus 89 ~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 89 NGFELAGRPMKVGHVTER 106 (108)
T ss_dssp TTCCSSSSCCEEECSCSS
T ss_pred CCCEECCEEEEEEEcccC
Confidence 999999999999988754
No 100
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.1e-17 Score=122.54 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=69.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~ln 113 (231)
.....+++|||+|||+++|+++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .||
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYG-----------EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 3445678999999999999999999999999 6777777543 699999999999999999 899
Q ss_pred CCeecCceEEEeCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDY 130 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~ 130 (231)
|..|.|+.|+|.+++..
T Consensus 90 g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 90 GAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp TCEETTEECEEEESEES
T ss_pred CCEECCcEEEEEEcccC
Confidence 99999999999987643
No 101
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.3e-18 Score=122.91 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=69.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
....+++|||+|||+++++++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+|+ .|||
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 87 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYG-----------EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 87 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccC-----------CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC
Confidence 345678999999999999999999999999 677777643 3799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCC
Q psy2204 115 INFKGQSLKIRRPHDY 130 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~ 130 (231)
..+.|+.|+|.+++..
T Consensus 88 ~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 88 QDLMGQPISVDWCFVR 103 (106)
T ss_dssp CBSSSSBCEEEESEES
T ss_pred CEECCcEEEEEeecCC
Confidence 9999999999987643
No 102
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=120.61 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHHHHhhhhhhccccCCCCeeeeEec----CCCcEEEEEecCHHHHHHHH-
Q psy2204 42 ITRQARRLYVGNIPFGV------TEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN----LDKNFAFLEFRSIDETTQAM- 110 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~------te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~----~~kg~aFV~F~~~~~a~~Al- 110 (231)
....+++|||+|||+.+ |+++|+++|++|| .|.++++. +++|||||+|.+.++|.+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-----------~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~ 79 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-----------KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVK 79 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS-----------CEEEEECCCBTTBSCCEEEEEECSSSHHHHHHH
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC-----------CEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 44567899999999999 7899999999999 66666665 45899999999999999999
Q ss_pred HhCCCeecCc-eEEEeCCCCCC
Q psy2204 111 AFDGINFKGQ-SLKIRRPHDYQ 131 (231)
Q Consensus 111 ~lng~~l~gr-~i~V~~~~~~~ 131 (231)
.|||..|.|+ .|+|.++....
T Consensus 80 ~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 80 NADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp HCSSEECSTTCEEEEECSCCCC
T ss_pred HhCCcccCCCceEEEEEcchHh
Confidence 8999999999 99999887543
No 103
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.6e-17 Score=116.62 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
.....++|||+|| ++|+++|+++|++|| .|.++++.+++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G-----------~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFG-----------NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTS-----------CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCC-----------CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3456789999996 999999999999999 8999999999999999999999999999 9999999999
Q ss_pred eEEEeCCCCCC
Q psy2204 121 SLKIRRPHDYQ 131 (231)
Q Consensus 121 ~i~V~~~~~~~ 131 (231)
.|+|.+++...
T Consensus 78 ~l~v~~a~~~~ 88 (97)
T 1x5p_A 78 QLKVNIARKQP 88 (97)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCC
Confidence 99999887544
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.2e-17 Score=117.45 Aligned_cols=75 Identities=29% Similarity=0.525 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHHHhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAMAFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al~lng~~l~ 118 (231)
..++|||+|||+++++++|+++|++|| .|.++++. +++|||||+|.+.++|.+|+.+||..+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~ 73 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCG-----------SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 73 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGC-----------CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEEC
Confidence 468999999999999999999999999 56666554 3479999999999999999999999999
Q ss_pred CceEEEeCCCCC
Q psy2204 119 GQSLKIRRPHDY 130 (231)
Q Consensus 119 gr~i~V~~~~~~ 130 (231)
|+.|+|.++++.
T Consensus 74 g~~l~V~~a~~~ 85 (89)
T 3ucg_A 74 GRQIKVIPKRTN 85 (89)
T ss_dssp TEECEEEETTTT
T ss_pred CcEEEEEEccCC
Confidence 999999988753
No 105
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.1e-18 Score=122.36 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
....++|||||||+++|+++|+++|++|| .|.++++.+ +||||||+|.+.++|.+||.+|+..+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G-----------~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~ 76 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKG-----------QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 76 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSS-----------CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcC-----------CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEE
Confidence 34568999999999999999999999999 677666654 58999999999999999999999999
Q ss_pred cCceEEEeCCCC
Q psy2204 118 KGQSLKIRRPHD 129 (231)
Q Consensus 118 ~gr~i~V~~~~~ 129 (231)
.|+.|.|.+...
T Consensus 77 ~gr~l~V~~~~~ 88 (103)
T 1s79_A 77 KETDLLILFKDD 88 (103)
T ss_dssp TTTTCEEEEHHH
T ss_pred CCEEEEEEEchH
Confidence 999999986553
No 106
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=119.73 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHH-hhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQ-QMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~-~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.....++|||+|||+++|+++|+++|+. || .|.++++.+ ++|||||+|.+.++|.+|+ .||+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G-----------~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 73 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYP-----------SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 73 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCT-----------TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC-----------CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccC
Confidence 3456789999999999999999999999 99 666666644 4799999999999999999 8999
Q ss_pred Ce-ecCceEEEeCCCCCC
Q psy2204 115 IN-FKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~-l~gr~i~V~~~~~~~ 131 (231)
.. +.|+.|+|.++....
T Consensus 74 ~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 74 AVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp CCSSSSSCCCCCBCCCCC
T ss_pred CcccCCEeEEEEEccCCC
Confidence 99 999999999886544
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.9e-17 Score=122.07 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhh-hhhhccccCCCCeeeeEe--cCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAAGNPVLACQI--NLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G-~~~~~~~~~~~~i~~~~~--~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
....+|||+|||+++++++|+++|++|| . |..+++ .+++|||||+|.+.++|.+|| .|||..|.|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~-----------v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLE-----------TTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCC-----------CSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCe-----------eEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4567999999999999999999999999 3 444444 246899999999999999999 999999999
Q ss_pred ceEEEeCCCC
Q psy2204 120 QSLKIRRPHD 129 (231)
Q Consensus 120 r~i~V~~~~~ 129 (231)
|.|+|.+++.
T Consensus 95 r~i~V~~a~~ 104 (111)
T 2jvr_A 95 SVITVERDDN 104 (111)
T ss_dssp EEEEEEESCC
T ss_pred eEEEEEECCC
Confidence 9999998764
No 108
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=121.54 Aligned_cols=82 Identities=16% Similarity=0.389 Sum_probs=65.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHh
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAF 112 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~l 112 (231)
...+....++|||+|||+++|+++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+||..
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-----------~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFG-----------EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccC-----------CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 345556789999999999999999999999999 677777644 479999999999999999955
Q ss_pred CCCeecCceEEEeCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~ 131 (231)
++..|.|+.|+|.++....
T Consensus 87 ~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 87 SRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp SCEEETTEEEEEEECCCCC
T ss_pred CCCcCCCEEEEEEEccCCC
Confidence 5699999999999887543
No 109
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=121.23 Aligned_cols=79 Identities=18% Similarity=0.329 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.....++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|| .||+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFG-----------SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 79 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTC-----------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999999999999999999999 6777766543 689999999999999999 8999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..|.|+.|+|.++++..
T Consensus 80 ~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 80 FGYDHLILNVEWAKPST 96 (103)
T ss_dssp CEETTEECEEEESSCCC
T ss_pred CeeCCcEEEEEECCCCC
Confidence 99999999999887544
No 110
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.5e-17 Score=127.29 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=73.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
.......++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 135 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYG-----------PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 135 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS-----------CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC-----------CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44556779999999999999999999999999 8888888876 999999999999999999 8999999
Q ss_pred cCceEEEeCCCCC
Q psy2204 118 KGQSLKIRRPHDY 130 (231)
Q Consensus 118 ~gr~i~V~~~~~~ 130 (231)
.|++|+|.++++.
T Consensus 136 ~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 136 CGCRVRVELSNGE 148 (150)
T ss_dssp SSSCCEEEECCCC
T ss_pred CCeEEEEEEcCCC
Confidence 9999999988653
No 111
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-18 Score=120.55 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
....++|||+|||+++++++|+++|++||.|..+. .+.+....+.+|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~-----~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV-----CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC-----EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceE-----EEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34567999999999999999999999999665432 2333334556899999999999999999 99999999999
Q ss_pred EEEeCCCC
Q psy2204 122 LKIRRPHD 129 (231)
Q Consensus 122 i~V~~~~~ 129 (231)
|+|.+++.
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 99998763
No 112
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1.5e-17 Score=118.87 Aligned_cols=77 Identities=21% Similarity=0.431 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHHhhhhhhccccCCCCeeeeEec---CCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMM----EFFNQQMHLSGLAQAAGNPVLACQIN---LDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~----~~F~~~G~~~~~~~~~~~~i~~~~~~---~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
..++++|||+|||+++++++|+ ++|++|| .|.++++. +++|||||+|.+.++|.+|+ .|||
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G-----------~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFG-----------QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS-----------CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC-----------CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 3567899999999999999999 9999999 77777665 55899999999999999999 8999
Q ss_pred CeecCceEEEeCCCCC
Q psy2204 115 INFKGQSLKIRRPHDY 130 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~ 130 (231)
..+.|+.|+|.++++.
T Consensus 74 ~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTD 89 (97)
T ss_dssp CEETTEECEEEECSSC
T ss_pred CEECCcEEEEEEccCC
Confidence 9999999999988753
No 113
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.5e-17 Score=125.78 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=70.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
....++++|||+|||+++++++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|| .||
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-----------~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYG-----------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTS-----------CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3445678999999999999999999999999 67777664 45799999999999999999 899
Q ss_pred CCeecCceEEEeCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~ 131 (231)
|..|.|++|+|.+++...
T Consensus 110 g~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 110 GMELDGRRIRVDFSITKR 127 (129)
T ss_dssp TCCSSSSCCEESCCSSSS
T ss_pred CCEECCEEEEEEEecCCC
Confidence 999999999999887543
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-18 Score=124.16 Aligned_cols=79 Identities=28% Similarity=0.648 Sum_probs=68.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~ln 113 (231)
......++|||+|||+++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|+ .||
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-----------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVG-----------PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTS-----------CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcC-----------CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3445678999999999999999999999999 5666655433 799999999999999999 899
Q ss_pred CCeecCceEEEeCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDY 130 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~ 130 (231)
|..+.|+.|+|.++...
T Consensus 72 g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 72 GREFSGRALRVDNAASE 88 (104)
T ss_dssp SBSCSSSCBEEEETTCT
T ss_pred CCeeCCcEEEEEeCCCc
Confidence 99999999999988754
No 115
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.8e-17 Score=119.78 Aligned_cols=80 Identities=14% Similarity=0.288 Sum_probs=69.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-H
Q psy2204 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-A 111 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~ 111 (231)
.+......++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|| .
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFG-----------DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTS-----------CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 345556789999999999999999999999999 6777777553 689999999999999999 8
Q ss_pred hCCCeecCceEEEeCCCCC
Q psy2204 112 FDGINFKGQSLKIRRPHDY 130 (231)
Q Consensus 112 lng~~l~gr~i~V~~~~~~ 130 (231)
+|+ .|.|+.|+|.++...
T Consensus 79 ~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 79 PNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SSC-EETTEECEEEESTTT
T ss_pred CCC-cCCCEEEEEEEcccC
Confidence 888 899999999988643
No 116
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=5.2e-18 Score=120.84 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEE
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLK 123 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~ 123 (231)
..++|||+|||+++|+++|+++|++||.|..+. .+.+....+.+|||||+|.+.++|.+|+ .||+..|.||.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~-----~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV-----CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCC-----EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceE-----EEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 457999999999999999999999999655432 2223233455799999999999999999 8999999999999
Q ss_pred EeCCC
Q psy2204 124 IRRPH 128 (231)
Q Consensus 124 V~~~~ 128 (231)
|.++.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99765
No 117
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=6.6e-18 Score=115.18 Aligned_cols=69 Identities=17% Similarity=0.375 Sum_probs=61.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHHHhCCCeecCce
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~ 121 (231)
+|||+|||+++++++|+++|++|| .|.++++ .+++|||||+|.+.++|.+|+++|+..+.|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFG-----------KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTS-----------CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcC-----------CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 599999999999999999999999 4555544 44579999999999999999999999999999
Q ss_pred EEEeCC
Q psy2204 122 LKIRRP 127 (231)
Q Consensus 122 i~V~~~ 127 (231)
|+|+++
T Consensus 70 l~v~~A 75 (75)
T 2mss_A 70 VECKKA 75 (75)
T ss_dssp CEEECC
T ss_pred EEEEeC
Confidence 999864
No 118
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.7e-17 Score=124.37 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~l 112 (231)
+......++|||+|||+++|+++|+++|++|| .|.++.+..+ +|||||+|.+.++|.+|+ .|
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 84 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYG-----------EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 84 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 34455678999999999999999999999999 7777777544 799999999999999999 89
Q ss_pred CCCeecCceEEEeCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~ 131 (231)
||..|.|+.|.|.++....
T Consensus 85 ~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 85 NGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp TTCBSSSSBCEEEESEESS
T ss_pred CCCeeCCeEEEEEEecCCC
Confidence 9999999999999876543
No 119
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=1.8e-17 Score=120.69 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec-----CCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-----LDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-----~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
......++|||+|||+++|+++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|+ .|||
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 92 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFG-----------TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 92 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3446678999999999999999999999999 67666665 34799999999999999999 8999
Q ss_pred CeecCceEEEeCCC
Q psy2204 115 INFKGQSLKIRRPH 128 (231)
Q Consensus 115 ~~l~gr~i~V~~~~ 128 (231)
..+.|+.|+|.++.
T Consensus 93 ~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 93 VPLDGRPMNIQLVT 106 (107)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCcEEEEEEeC
Confidence 99999999998764
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=125.26 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=65.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeee-EecCCCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC-QINLDKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~-~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
......++|||+|||+++++++|+++|+.|| |.++. .+.+. ...+.+|||||+|.+.++|.+|+.|||..|.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~-----i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR-----LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEE-----CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE-----EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 3446678999999999999999999999998 55442 11111 13456899999999999999999999999999
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
+.|+|.++++.
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999987643
No 121
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=119.78 Aligned_cols=81 Identities=19% Similarity=0.414 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
.....++|||+|||+++|+++|+++|++||.|. .+.+ ...+.+|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~--------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIK--------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE--------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE--------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 455789999999999999999999999999441 1112 34566899999999999999999 8999999999
Q ss_pred eEEEeCCCCCC
Q psy2204 121 SLKIRRPHDYQ 131 (231)
Q Consensus 121 ~i~V~~~~~~~ 131 (231)
.|+|.++++..
T Consensus 82 ~l~v~~a~~~~ 92 (101)
T 2fc9_A 82 AIRLELQGPRG 92 (101)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEcCCCC
Confidence 99999887543
No 122
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=121.44 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-cCCCcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
...++|||+|||+++++++|+++|+.|| |..+. .+.+... .+.+|||||+|.+.++|.+||.||+..|.|+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~-----i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR-----LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEE-----CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEE-----EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE
Confidence 4568999999999999999999999998 54432 1122222 455899999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy2204 123 KIRRPHDYQ 131 (231)
Q Consensus 123 ~V~~~~~~~ 131 (231)
+|.+++...
T Consensus 87 ~V~~a~~~~ 95 (104)
T 1wi8_A 87 RVDVADQAQ 95 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999887654
No 123
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=2.9e-17 Score=120.38 Aligned_cols=74 Identities=22% Similarity=0.452 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 44 RQARRLYVGNIPFG-VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 44 ~~~r~lfVgNLp~~-~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
..+++|||+|||++ +|+++|+++|++|| .|.++++ .+|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G-----------~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYG-----------RVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGS-----------CCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCC-----------CeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 44689999999999 99999999999999 7777777 5899999999999999999 99999999999
Q ss_pred EEEeCCCCC
Q psy2204 122 LKIRRPHDY 130 (231)
Q Consensus 122 i~V~~~~~~ 130 (231)
|+|.+++..
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 999988643
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=116.11 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=61.5
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHHhhhhhhccccCCCCeeeeEec----CCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 46 ARRLYVGNIPFGV------TEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN----LDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 46 ~r~lfVgNLp~~~------te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~----~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
+++|||+|||+++ ++++|+++|++|| .|.++++. +++|||||+|.+.++|.+|+ .|||
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-----------KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTC-----------CEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC-----------CeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC
Confidence 4799999999999 7799999999999 66666665 45899999999999999999 8999
Q ss_pred CeecCc-eEEEe
Q psy2204 115 INFKGQ-SLKIR 125 (231)
Q Consensus 115 ~~l~gr-~i~V~ 125 (231)
..+.|+ +|+|.
T Consensus 70 ~~~~g~~~l~V~ 81 (81)
T 2krb_A 70 YKLDKQHTFRVN 81 (81)
T ss_dssp CCCSSSSCCCCC
T ss_pred cccCCceeEEeC
Confidence 999999 88763
No 125
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=115.52 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCc-EEEEEecCHHHHHHHHHhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-FAFLEFRSIDETTQAMAFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg-~aFV~F~~~~~a~~Al~lng~~l~gr 120 (231)
.....++|||+|||+++|+++|+++|+.|| .|.++.+.+..+ ||||+|.+.++|.+||.|||..|.|+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-----------~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~ 72 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFG-----------PVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGH 72 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTS-----------CEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcC-----------CeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCE
Confidence 345678999999999999999999999999 677663333322 99999999999999999999999999
Q ss_pred eEEEeCCCCCC
Q psy2204 121 SLKIRRPHDYQ 131 (231)
Q Consensus 121 ~i~V~~~~~~~ 131 (231)
.|.|.++....
T Consensus 73 ~l~V~~a~~~~ 83 (94)
T 2e5g_A 73 RLRVRPREQKE 83 (94)
T ss_dssp ECCCBCSCCSC
T ss_pred EEEEEECCcCC
Confidence 99999776443
No 126
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-18 Score=119.39 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
..+++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-----------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYG-----------KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTS-----------CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 4678999999999999999999999999 6777766543 799999999999999999 899999
Q ss_pred ecCceEEEeCCC
Q psy2204 117 FKGQSLKIRRPH 128 (231)
Q Consensus 117 l~gr~i~V~~~~ 128 (231)
+.|+.|++.+++
T Consensus 72 ~~g~~~~~~~~~ 83 (85)
T 1x4e_A 72 VQAQMAKQSGPS 83 (85)
T ss_dssp CCEESCCSSCCC
T ss_pred EeeEEEeecCCC
Confidence 999999988765
No 127
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.1e-17 Score=121.16 Aligned_cols=78 Identities=23% Similarity=0.482 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHHHhCCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAMAFDGI 115 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al~lng~ 115 (231)
.....++|||+|||+++++++|+++|++|| |.++++. +.+|||||+|.+.++|.+||.||+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~ 78 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS------------IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 78 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC------------EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC------------ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCC
Confidence 334578999999999999999999999996 4444443 4478999999999999999999999
Q ss_pred eecCceEEEeCCCCCC
Q psy2204 116 NFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~ 131 (231)
.|.|+.|+|.+++...
T Consensus 79 ~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 79 LLGDRSLRVDIAEGRK 94 (103)
T ss_dssp EETTEECEEEECCCCC
T ss_pred eECCeEEEEEEecCCC
Confidence 9999999999887544
No 128
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=8.9e-18 Score=121.28 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-
Q psy2204 44 RQARRLYVGNIPF------GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM- 110 (231)
Q Consensus 44 ~~~r~lfVgNLp~------~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al- 110 (231)
..+++|||+|||+ ++++++|+++|++|| .|.++++ .++||||||+|.+.++|.+||
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G-----------~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG-----------KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS-----------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC-----------CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 4568999999999 999999999999999 6666665 445799999999999999999
Q ss_pred HhCCCeecC-ceEEEeCCCC
Q psy2204 111 AFDGINFKG-QSLKIRRPHD 129 (231)
Q Consensus 111 ~lng~~l~g-r~i~V~~~~~ 129 (231)
.|||..|.| |.|+|.++.+
T Consensus 73 ~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 73 SFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHTTCBSSSSCBCEEEESHH
T ss_pred HhCCcccCCCeEEEEEECch
Confidence 999999999 9999997753
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-17 Score=119.16 Aligned_cols=75 Identities=19% Similarity=0.415 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 43 TRQARRLYVGNIPF-GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 43 ~~~~r~lfVgNLp~-~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
..++++|||+|||+ ++++++|+++|++|| .|.++++. +|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G-----------~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYG-----------HIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTC-----------CCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC-----------CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 45678999999999 999999999999999 78887775 899999999999999999 8999999999
Q ss_pred eEEEeCCCCC
Q psy2204 121 SLKIRRPHDY 130 (231)
Q Consensus 121 ~i~V~~~~~~ 130 (231)
.|+|.+++..
T Consensus 74 ~l~V~~a~~~ 83 (96)
T 2kvi_A 74 KLILEVSSSN 83 (96)
T ss_dssp TBCEEEEECC
T ss_pred EEEEEEcCcC
Confidence 9999987643
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=119.21 Aligned_cols=80 Identities=26% Similarity=0.450 Sum_probs=68.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeee-EecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC-QINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~-~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
......++|||+|||+++++++|+++|+.|| .|..+ ...+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g-----------~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDAL-----------EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEE-----------EECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCC-----------cEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3445678999999999999999999999999 34333 44556899999999999999999 89999999
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
|+.|+|.++++..
T Consensus 80 g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 80 GRSVSLYYTGEKG 92 (96)
T ss_dssp TEEEEEEECSSSC
T ss_pred CeEEEEEEcCCCC
Confidence 9999999887543
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=4.7e-17 Score=120.03 Aligned_cols=75 Identities=21% Similarity=0.446 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec---CCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN---LDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~---~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
..+++|||+|||+++|+++|+++|+.|| .|.++.+. ..+|||||+|.+.++|.+|+ .|||..+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYG-----------PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTS-----------CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999999999999999999999 77777774 34799999999999999999 899999999
Q ss_pred ceEEEeCCCC
Q psy2204 120 QSLKIRRPHD 129 (231)
Q Consensus 120 r~i~V~~~~~ 129 (231)
+.|.|.++.+
T Consensus 75 ~~l~v~~a~~ 84 (115)
T 3lqv_A 75 RYLVVLYYNA 84 (115)
T ss_dssp CBCEEEECCH
T ss_pred eEEEEEEecC
Confidence 9999998764
No 132
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=119.47 Aligned_cols=80 Identities=19% Similarity=0.398 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHHHhCC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAMAFDG 114 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al~lng 114 (231)
......++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+||..|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~ 79 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYG-----------EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 79 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTS-----------CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 3456678999999999999999999999999 6766666543 5899999999999999994499
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..|.|+.|+|.++++..
T Consensus 80 ~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 80 HTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp EEETTEEEBCCCSCCSS
T ss_pred CeECCEEEEEEEccCCC
Confidence 99999999999887654
No 133
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=123.27 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhh-hhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHL-SGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~-~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr 120 (231)
.....++|||+|||+++|+++|+++|+.||.+ ..+. |...+..+.+|||||+|.+.++|.+||.+|+..|.||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~------i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH------VLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE------ECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE------EEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 34567899999999999999999999999944 2221 1111134568999999999999999996699999999
Q ss_pred eEEEeCCCC
Q psy2204 121 SLKIRRPHD 129 (231)
Q Consensus 121 ~i~V~~~~~ 129 (231)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (114)
T 2cpy_A 85 EAFVHVVTL 93 (114)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999997653
No 134
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=1.5e-17 Score=117.13 Aligned_cols=75 Identities=17% Similarity=0.376 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
++.+++|||+|||+++++++|+++|++| . |.++++.+++|||||+|.+.++|.+|+ .|||..+.|+.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~-----------v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-D-----------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-C-----------CCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-C-----------eEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3567899999999999999999999999 4 444444577999999999999999999 89999999999
Q ss_pred EEEeCCCC
Q psy2204 122 LKIRRPHD 129 (231)
Q Consensus 122 i~V~~~~~ 129 (231)
|+|.++..
T Consensus 70 l~V~~a~~ 77 (88)
T 1wg1_A 70 LIVQLQPT 77 (88)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99998754
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=1.6e-17 Score=123.55 Aligned_cols=80 Identities=14% Similarity=0.275 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhh---hhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH---LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~---~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
....++|||+|||+++|+++|+++|+.||. |..+ .|...+..+.+|||||+|.+.++|.+||.+|+..|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v------~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g 87 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGV------HFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGH 87 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGE------EEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeE------EEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 356789999999999999999999999996 3333 1222122556899999999999999999999999999
Q ss_pred ceEEEeCCC
Q psy2204 120 QSLKIRRPH 128 (231)
Q Consensus 120 r~i~V~~~~ 128 (231)
|.|+|.++.
T Consensus 88 r~i~V~~a~ 96 (118)
T 2db1_A 88 RYIEVFKSH 96 (118)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEECC
Confidence 999998664
No 136
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=121.25 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHHHhhhhhhccccCCCCeeeeEecCC---------CcEEEEEecCHHHHHHHH-
Q psy2204 44 RQARRLYVGNIPFGVTEDEMM---EFFNQQMHLSGLAQAAGNPVLACQINLD---------KNFAFLEFRSIDETTQAM- 110 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~---~~F~~~G~~~~~~~~~~~~i~~~~~~~~---------kg~aFV~F~~~~~a~~Al- 110 (231)
...++|||+|||+++++++|+ ++|++|| .|.++++.++ +|||||+|.+.++|.+||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G-----------~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~ 81 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFG-----------KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQ 81 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTS-----------CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccC-----------CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHH
Confidence 457899999999999999999 9999999 6777776543 479999999999999999
Q ss_pred HhCCCeecCceEEEeCCCCCC
Q psy2204 111 AFDGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 111 ~lng~~l~gr~i~V~~~~~~~ 131 (231)
.|||..|.|+.|+|.++++..
T Consensus 82 ~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 82 CVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHTTEEETTEEEEEESCCCCS
T ss_pred HhCCCEECCEEEEEEeccccc
Confidence 899999999999999887543
No 137
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=2.3e-16 Score=117.93 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
....+++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .|||.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFG-----------TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTS-----------CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 445678999999999999999999999999 555555543 5899999999999999999 89999
Q ss_pred eecCceEEEeCCCCCC
Q psy2204 116 NFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 116 ~l~gr~i~V~~~~~~~ 131 (231)
.+.|+.|+|.++....
T Consensus 100 ~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 100 PLDGRPMDIQLVASQI 115 (124)
T ss_dssp ESSSCEEEEEEECCTT
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999876543
No 138
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=2.4e-17 Score=122.02 Aligned_cols=77 Identities=16% Similarity=0.293 Sum_probs=65.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
...+..++|||+|||+++|+++|+++|++|| .|.++++..+ |||||+|.+.++|.+|| .|||..|.|
T Consensus 11 p~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 11 PSRRSENRVVVSGLPPSGSWQDLKDHMREAG-----------DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp ------CCEEEEECCSSCCTTHHHHHHGGGS-----------CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3345678999999999999999999999999 8999988877 99999999999999999 899999999
Q ss_pred ce-----EEEeCCCC
Q psy2204 120 QS-----LKIRRPHD 129 (231)
Q Consensus 120 r~-----i~V~~~~~ 129 (231)
+. |+|.....
T Consensus 79 r~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 79 HEGETAYIRVKVDGP 93 (115)
T ss_dssp TTSCCCBCEEEECC-
T ss_pred cEeeeEEEEeccCCC
Confidence 98 67765544
No 139
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=1.8e-16 Score=123.27 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.....++|||+|||+++|+++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+|| .|||
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-----------~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 134 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYG-----------RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 134 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHS-----------CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 345578999999999999999999999999 666666644 4799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQP 132 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~~ 132 (231)
..|.|+.|+|.++++..+
T Consensus 135 ~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 135 AVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EESSSSEEEEEEECCSSC
T ss_pred CEECCeEEEEEECCCCCC
Confidence 999999999998876543
No 140
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=1.5e-17 Score=126.96 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhh---hhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMH---LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~---~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
......++|||+|||+++|+++|+++|+.||. +.++. |...+..++||||||+|.+.++|.+||.+|+..|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~------i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l 112 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH------FIYTREGRQSGEAFVELGSEDDVKMALKKDRESM 112 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE------EEECSSSCEEEEEEEECSSHHHHHHHHTTTEEES
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE------EEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEE
Confidence 44567789999999999999999999999995 33331 2211225568999999999999999999999999
Q ss_pred cCceEEEeCCC
Q psy2204 118 KGQSLKIRRPH 128 (231)
Q Consensus 118 ~gr~i~V~~~~ 128 (231)
.||.|+|.++.
T Consensus 113 ~gr~i~V~~a~ 123 (136)
T 2hgl_A 113 GHRYIEVFKSH 123 (136)
T ss_dssp SSSEEEEEECC
T ss_pred CCEEEEEEECC
Confidence 99999998764
No 141
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=121.87 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=68.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~l 112 (231)
.......++|||+|||+++++++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+ .|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFG-----------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGS-----------CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcC-----------CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 34455789999999999999999999999999 677777744 4799999999999999999 99
Q ss_pred CCCeecCceEEEeCC
Q psy2204 113 DGINFKGQSLKIRRP 127 (231)
Q Consensus 113 ng~~l~gr~i~V~~~ 127 (231)
||..|.|+.|+|.++
T Consensus 126 ~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 126 NESELFGRTIRVNLA 140 (140)
T ss_dssp TEEEETTEEEEEEC-
T ss_pred CCCEECCEEEEEEeC
Confidence 999999999999864
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-18 Score=126.28 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCce
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~ 121 (231)
.....++|||+|||+++|+++|+++|+.||.|..+. .+.+....+.+|||||+|.+.++|.+||.+|+..|.||.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~-----~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI-----YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC-----EEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceE-----EEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 345668999999999999999999999999665432 333444556689999999999999999999999999999
Q ss_pred EEEeCCC
Q psy2204 122 LKIRRPH 128 (231)
Q Consensus 122 i~V~~~~ 128 (231)
|.|.++.
T Consensus 96 i~V~~a~ 102 (124)
T 1wel_A 96 IQVHPIT 102 (124)
T ss_dssp BEEEEEC
T ss_pred EEEEECC
Confidence 9999765
No 143
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-17 Score=123.26 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHHHhCCCe
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAMAFDGIN 116 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al~lng~~ 116 (231)
....++|||+|||+++++++|+++|+.|| .|.++++. +.+|||||+|.+.++|.+||.||+..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~ 90 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVG-----------KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQR 90 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCE
Confidence 34668999999999999999999999999 67777764 45799999999999999999999999
Q ss_pred ecCceEEEeCCC
Q psy2204 117 FKGQSLKIRRPH 128 (231)
Q Consensus 117 l~gr~i~V~~~~ 128 (231)
|.|+.|+|.+++
T Consensus 91 ~~g~~l~V~~a~ 102 (114)
T 2cq4_A 91 LLGVPIIVQASQ 102 (114)
T ss_dssp ETTEEEEEEEHH
T ss_pred eCCeEEEEEecC
Confidence 999999999765
No 144
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=7.7e-17 Score=125.29 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=70.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhC
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
......++|||+|||+++|+++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|| .||
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSG-----------DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3445678999999999999999999999999 677777643 3689999999999999999 899
Q ss_pred CCeecCceEEEeCCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQP 132 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~~ 132 (231)
+..|.|+.|+|.++++...
T Consensus 103 g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 103 GTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp TSEETTEECEEEEESCCCT
T ss_pred CCEECCeEEEEEECCCCCC
Confidence 9999999999998876543
No 145
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=115.80 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCce
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~ 121 (231)
.....++|||+|||+++++++|+++|+.| .+..+. +......+.+|||||+|.+.++|.+||.||+..|.||.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~------i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~ 78 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIR------IVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY 78 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEE------EEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEE------EEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE
Confidence 34567899999999999999999999999 544331 21113344589999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy2204 122 LKIRRPHDY 130 (231)
Q Consensus 122 i~V~~~~~~ 130 (231)
|+|.+++..
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 999987654
No 146
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-17 Score=119.87 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhh-ccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG-LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~-~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~ 121 (231)
....++|||+|||+++|+++|+++|+.||.|.. +. .+.+ ...+.+|||||+|.+.++|.+||..|+..+.||.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~-----i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT-----LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEE-----CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEE-----EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 356789999999999999999999999994332 11 1111 3345689999999999999999955999999999
Q ss_pred EEEeCCCC
Q psy2204 122 LKIRRPHD 129 (231)
Q Consensus 122 i~V~~~~~ 129 (231)
|+|..+..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99987653
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=119.62 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=66.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
.....++|||+|||+++|+++|+++|+.|+.+. .+.+....+.+|||||+|.+.++|.+|| .||+..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~--------~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRAR--------IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEE--------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEE--------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 345678999999999999999999999875211 1222223455799999999999999999 8999999999
Q ss_pred eEEEeCCCCCC
Q psy2204 121 SLKIRRPHDYQ 131 (231)
Q Consensus 121 ~i~V~~~~~~~ 131 (231)
.|+|.++++..
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2fc8_A 83 KVTLDWAKPKG 93 (102)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999887654
No 148
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.8e-17 Score=126.26 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.....++|||+|||+++|+++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|+ .|||
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-----------~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 111 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYG-----------RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 111 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGS-----------CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999999999999999999999 55555554 44799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCCC
Q psy2204 115 INFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~~ 131 (231)
..|.|+.|+|.+++...
T Consensus 112 ~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 112 AVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCSSSSCCEEEECCCCC
T ss_pred CEECCEEEEEEECCCCC
Confidence 99999999999887644
No 149
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-16 Score=114.04 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=68.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHHHhC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAMAFD 113 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al~ln 113 (231)
.......++|||+|||+++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+||. +
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 76 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFG-----------EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-Q 76 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGS-----------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-S
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-c
Confidence 33445678999999999999999999999999 6766666443 6899999999999999996 4
Q ss_pred CCeecCceEEEeCCCCCC
Q psy2204 114 GINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 114 g~~l~gr~i~V~~~~~~~ 131 (231)
+..+.|+.|.|.++....
T Consensus 77 ~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 77 RHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp CEEETTEEEEEECCCTTC
T ss_pred CCeeCCeEEEEEecCCCC
Confidence 789999999999887654
No 150
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.7e-16 Score=124.15 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec--CCCcEEEEEecCHHHHHHHH-HhCCCeecC-
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN--LDKNFAFLEFRSIDETTQAM-AFDGINFKG- 119 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~--~~kg~aFV~F~~~~~a~~Al-~lng~~l~g- 119 (231)
..-.+|||+||++.+|+++|+++|++|| .|.++++. +.+|||||+|.+.++|.+|+ .|||..|.|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG-----------~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~ 112 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFG-----------TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA 112 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHS-----------CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcC-----------CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 3345799999999999999999999999 67777663 34689999999999999999 999999976
Q ss_pred -ceEEEeCCCCC
Q psy2204 120 -QSLKIRRPHDY 130 (231)
Q Consensus 120 -r~i~V~~~~~~ 130 (231)
+.|+|.+++..
T Consensus 113 g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 113 CCTLRIDFSKLT 124 (164)
T ss_dssp CSCEEEEECSSS
T ss_pred CcEEEEEEecCC
Confidence 99999988764
No 151
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=2e-17 Score=112.70 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=60.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHHHhCCCeecCce
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~ 121 (231)
+|||+|||+++++++|+++|++|| .|.++++ .+++|||||+|.+.++|.+|+.+++..+.|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFG-----------EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHS-----------CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 699999999999999999999999 5555555 44589999999999999999977999999999
Q ss_pred EEEeCC
Q psy2204 122 LKIRRP 127 (231)
Q Consensus 122 i~V~~~ 127 (231)
|+|+++
T Consensus 70 l~v~~a 75 (75)
T 1iqt_A 70 CEIKVA 75 (75)
T ss_dssp CCEEEC
T ss_pred EEEEEC
Confidence 998753
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=5.7e-17 Score=121.14 Aligned_cols=76 Identities=25% Similarity=0.478 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHHHhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAMAFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al~lng~~l~ 118 (231)
..++|||+|||+++|+++|+++|++|| .|.++++. +++|||||+|.+.++|.+|+.|||..|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~ 103 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCG-----------SINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFR 103 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTS-----------CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeEC
Confidence 468999999999999999999999999 66666554 4479999999999999999999999999
Q ss_pred CceEEEeCCCCCC
Q psy2204 119 GQSLKIRRPHDYQ 131 (231)
Q Consensus 119 gr~i~V~~~~~~~ 131 (231)
|+.|+|.+++...
T Consensus 104 g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 104 GRTIKVLPKRTNM 116 (124)
T ss_dssp TEECEEEESSCCC
T ss_pred CeEEEEEECCCCC
Confidence 9999999887543
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=124.05 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
....+++|||+|||+++|+++|+++|+.||.|..+....-..+......+.+|||||+|.+.++|.+|| .|||..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999765430000001333456788999999999999999999 8999999999
Q ss_pred eEEEeCCCCCCC
Q psy2204 121 SLKIRRPHDYQP 132 (231)
Q Consensus 121 ~i~V~~~~~~~~ 132 (231)
.|.|.+++....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999998876543
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=120.36 Aligned_cols=82 Identities=12% Similarity=0.221 Sum_probs=67.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhh---hhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMH---LSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~---~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
......++|||+|||+++|+++|+++|+.||. +.++. .+.+.. ++++|||||+|.+.++|.+||.+|+..+
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~-----i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~ 79 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIH-----FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYM 79 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEE-----CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEE-----EEECCC-CCEeeEEEEEECCHHHHHHHHHhCccee
Confidence 34457789999999999999999999999985 33331 111222 5568999999999999999999999999
Q ss_pred cCceEEEeCCC
Q psy2204 118 KGQSLKIRRPH 128 (231)
Q Consensus 118 ~gr~i~V~~~~ 128 (231)
.||.|+|.++.
T Consensus 80 ~gr~i~V~~a~ 90 (107)
T 2lmi_A 80 GQRYVEVYEIN 90 (107)
T ss_dssp SSSCCCCEECC
T ss_pred CCeEEEEEECC
Confidence 99999998765
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-17 Score=120.65 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
....++|||+|||+++|+++|+++|+.||. ..+ .|...+..++||||||+|.+.++|.+||++|+..|.||.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v------~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRV------HIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEE------EEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEE------EEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 345689999999999999999999999992 222 1221123455899999999999999999889999999999
Q ss_pred EEeCCCC
Q psy2204 123 KIRRPHD 129 (231)
Q Consensus 123 ~V~~~~~ 129 (231)
+|..+..
T Consensus 85 ~V~~~~~ 91 (102)
T 1wez_A 85 ELFLNST 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9987654
No 156
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=111.65 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHHHh-hhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARR-LYVGNIPFGVTEDE----MMEFFNQQ-MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~-lfVgNLp~~~te~~----L~~~F~~~-G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.++.+ |||+|||+++++++ |+++|++| | .|+++ + .|+|||+|.+.++|.+|+ .|||..
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG-----------~Vl~V-t---gG~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGG-----------KVLSI-T---GCSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTC-----------CEEEC-C---TTCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCC-----------eeEEE-e---cCEEEEEECCHHHHHHHHHHhcCCc
Confidence 34566 99999999999988 56899999 6 56666 2 399999999999999999 999999
Q ss_pred ecCceEEEeCCCCCC
Q psy2204 117 FKGQSLKIRRPHDYQ 131 (231)
Q Consensus 117 l~gr~i~V~~~~~~~ 131 (231)
+.||+|+|.+++...
T Consensus 71 l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 71 VFGNRIIVSFTPKNR 85 (96)
T ss_dssp SSSSCCEEESSCCSC
T ss_pred cCCceEEEEecCCCc
Confidence 999999999998654
No 157
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=120.91 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-----cCCCcEEEEEecCHHHHHHHHHhCCCeec
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-----NLDKNFAFLEFRSIDETTQAMAFDGINFK 118 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-----~~~kg~aFV~F~~~~~a~~Al~lng~~l~ 118 (231)
...++|||+|||+++|+++|+++|+.| . |.++++ .+++|||||+|.+.++|.+||.+|+..|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~-----------v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 81 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-R-----------VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMI 81 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-C-----------CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-C-----------eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 345799999999999999999999999 3 344444 45689999999999999999999999999
Q ss_pred CceEEEeCCC
Q psy2204 119 GQSLKIRRPH 128 (231)
Q Consensus 119 gr~i~V~~~~ 128 (231)
||.|.|..+.
T Consensus 82 gr~i~V~~a~ 91 (109)
T 2dnn_A 82 QRYVEVSPAT 91 (109)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEECC
Confidence 9999998664
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=111.61 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeE-ecCC--CcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQ-INLD--KNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~-~~~~--kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
..+++|||+|||+++++++|+++|++|| .|.+++ +..+ .+.|||+|.+.++|.+|+ .|||..+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYG-----------VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHS-----------CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcC-----------CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568999999999999999999999999 788884 6554 456999999999999999 899999999
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
+.|+|.++.+.
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 99999988754
No 159
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=116.99 Aligned_cols=78 Identities=24% Similarity=0.494 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
...++|||+|||+++|+++|+++|+.|| .|.++++.+ .+|||||+|.+.++|.+||..|+..|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~ 93 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWG-----------KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 93 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSC-----------CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEE
Confidence 3458999999999999999999999999 566666644 47999999999999999994499999
Q ss_pred cCceEEEeCCCCCCC
Q psy2204 118 KGQSLKIRRPHDYQP 132 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~ 132 (231)
.|+.|+|.++.....
T Consensus 94 ~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 94 DGRVVEPKRAVAREE 108 (116)
T ss_dssp TTEEEEEECCSSCCC
T ss_pred CCEEEEEEECCCCcc
Confidence 999999998876543
No 160
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=117.33 Aligned_cols=79 Identities=16% Similarity=0.334 Sum_probs=67.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHH-HhC
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
.......++|||+|||+++|+++|+++|+.|| .|.++++.+ .+|||||+|.+.++|.+|+ .||
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFG-----------QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTS-----------CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34455678999999999999999999999999 666666644 3799999999999999999 899
Q ss_pred CCee--------cCceEEEeCCCC
Q psy2204 114 GINF--------KGQSLKIRRPHD 129 (231)
Q Consensus 114 g~~l--------~gr~i~V~~~~~ 129 (231)
|..+ .+++|.|.++.+
T Consensus 88 g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 88 GKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp TCCCCCCTTSCCCSSCBEEEECCC
T ss_pred CCEEcCCccccCCCCceeEEccCC
Confidence 9999 567788887763
No 161
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.8e-17 Score=115.98 Aligned_cols=72 Identities=25% Similarity=0.558 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
++|||+|||+++++++|+++|++|| .|.++++. +++|||||+|.+.+ |.+|+ .|||..+.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG-----------KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG 69 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT-----------CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC-----------CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC
Confidence 6899999999999999999999999 56666664 44799999999999 99999 999999999
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
+.|+|.++...
T Consensus 70 ~~l~V~~a~~~ 80 (90)
T 2ki2_A 70 RTIRVTEANPK 80 (90)
T ss_dssp SSCSEEEC---
T ss_pred eEEEEEEcCCC
Confidence 99999987654
No 162
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=1.6e-16 Score=118.77 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCc
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQ 120 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr 120 (231)
....+++|||+|| ++|+++|+++|++|| .|.++++.+++|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G-----------~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFG-----------NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTC-----------CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccC-----------CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3456789999996 799999999999999 7888888899999999999999999999 9999999999
Q ss_pred eEEEeCCCCC
Q psy2204 121 SLKIRRPHDY 130 (231)
Q Consensus 121 ~i~V~~~~~~ 130 (231)
.|+|.+++..
T Consensus 102 ~l~V~~a~~~ 111 (121)
T 2bz2_A 102 QLKVNIARKQ 111 (121)
T ss_dssp BCEEEECCSS
T ss_pred EEEEEEeCCC
Confidence 9999988754
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=3e-17 Score=123.53 Aligned_cols=74 Identities=16% Similarity=0.327 Sum_probs=63.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCee--eeEe-----cCCCcEEEEEecCHHHHHHHHHhCCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVL--ACQI-----NLDKNFAFLEFRSIDETTQAMAFDGI 115 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~--~~~~-----~~~kg~aFV~F~~~~~a~~Al~lng~ 115 (231)
....++|||+|||+++|+++|+++|+.|+ |+ ++++ +++||||||+|.+.++|.+||.+++.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~------------i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~ 106 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLE------------IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKE 106 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSC------------EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCC------------ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCC
Confidence 34568999999999999999999999995 33 4444 45589999999999999999966889
Q ss_pred eecCceEEEeCCC
Q psy2204 116 NFKGQSLKIRRPH 128 (231)
Q Consensus 116 ~l~gr~i~V~~~~ 128 (231)
.|.||.|+|..+.
T Consensus 107 ~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 107 RIGHRYIEVFKSS 119 (126)
T ss_dssp CBTTBCCCCEEEC
T ss_pred EECCEEEEEEECC
Confidence 9999999998654
No 164
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=3e-17 Score=135.82 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhh--hhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQM--HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G--~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
..++|||+||++++|+++|+++|++|| .|.++. .+.+....++||||||+|.+.++|.+|| .||++.|.|+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~-----i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK-----FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEE-----EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEE-----EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 667999999999999999999999999 554432 1222233455799999999999999999 89999999999
Q ss_pred EEEeCCC
Q psy2204 122 LKIRRPH 128 (231)
Q Consensus 122 i~V~~~~ 128 (231)
|+|.+++
T Consensus 142 l~V~~a~ 148 (229)
T 3q2s_C 142 PVVTPVN 148 (229)
T ss_dssp CEEEECC
T ss_pred eEEEECC
Confidence 9999775
No 165
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=1.8e-16 Score=124.51 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=69.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-Hh
Q psy2204 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 40 ~~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~l 112 (231)
+......++|||+|||+++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|| .|
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYG-----------EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCC-----------CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh
Confidence 34456678999999999999999999999999 6777777554 699999999999999999 89
Q ss_pred CCCeecCceEEEeCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDY 130 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~ 130 (231)
||..|.|+.|.|.++...
T Consensus 135 ~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 135 NGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp TTCEETTEECEEEESEEC
T ss_pred CCCEECCEEEEEEEecCC
Confidence 999999999999987644
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=110.51 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=60.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-CCcEEEEEecCHHHHHHHHHhCCCe--ecC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-DKNFAFLEFRSIDETTQAMAFDGIN--FKG 119 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-~kg~aFV~F~~~~~a~~Al~lng~~--l~g 119 (231)
..+..+|||||||+++|+++|+++|++|| .|.++++.+ +||||||+|.+.++|.+ +++.. +.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G-----------~i~~v~i~~~srGfaFV~F~~~~~A~~---~~~~~~~~~g 73 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYG-----------EVVDVFIPKPFRAFAFVTFADDKVAQS---LCGEDLIIKG 73 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTS-----------CEEEEECCSSCCSEEEEEESCHHHHHH---HTTCEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC-----------CEEEEEEeeCCCCEEEEEECCHHHHHH---HcCCCcccCC
Confidence 34567999999999999999999999999 788888875 48999999999999984 44554 459
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
+.|.|.++.++
T Consensus 74 ~~v~v~~a~~k 84 (89)
T 3d2w_A 74 ISVHISNAEPK 84 (89)
T ss_dssp EEEEEEECC--
T ss_pred EEEEEEEcCCC
Confidence 99999987654
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=7.2e-18 Score=124.79 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhh--------ccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSG--------LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~--------~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
...+.++|||+|||+++++++|+++|++||.|.. +. .+.+....+.+|||||+|.+.++|.+|+ .|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~-----i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMIN-----LYTDRETGKLKGEATVSFDDPPSAKAAIDWF 77 (116)
Confidence 3456789999999999999999999999996544 21 1122233455899999999999999999 89
Q ss_pred CCCeecCceEEEeCCCCCC
Q psy2204 113 DGINFKGQSLKIRRPHDYQ 131 (231)
Q Consensus 113 ng~~l~gr~i~V~~~~~~~ 131 (231)
||..|.|+.|+|.+++...
T Consensus 78 ~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 78 DGKEFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999999887544
No 168
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.1e-17 Score=121.06 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhh----hhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~----~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
...++|||+|||+++|+++|+++|++||.| ..+ .|......+++|||||+|.+.++|.+||..|+..|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v------~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGI------LFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGE------EEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceE------EEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence 456899999999999999999999999854 222 1222234556899999999999999999669999999
Q ss_pred ceEEEeCCC
Q psy2204 120 QSLKIRRPH 128 (231)
Q Consensus 120 r~i~V~~~~ 128 (231)
|.|+|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 999997654
No 169
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.8e-17 Score=110.18 Aligned_cols=69 Identities=14% Similarity=0.419 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe------cCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI------NLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~------~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
++|||+|||+++++++|+++|++|| .|.++++ .+++|||||+|.+.++|.+|+ .++ ..+.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G-----------~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFG-----------EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTS-----------CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-----------CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 4799999999999999999999999 4555554 344799999999999999999 788 99999
Q ss_pred ceEEEeCC
Q psy2204 120 QSLKIRRP 127 (231)
Q Consensus 120 r~i~V~~~ 127 (231)
++|+|+++
T Consensus 69 ~~l~v~~a 76 (77)
T 1uaw_A 69 KTIDPKVA 76 (77)
T ss_dssp CCCEEEEC
T ss_pred EEEEEEec
Confidence 99999865
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=6.3e-16 Score=115.93 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=64.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcE-EEEEecCHHHHHHHH-HhCCCeecC--ceEE
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNF-AFLEFRSIDETTQAM-AFDGINFKG--QSLK 123 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~-aFV~F~~~~~a~~Al-~lng~~l~g--r~i~ 123 (231)
.|||+||++.+|+++|+++|++|| .|.++++.+..|| |||+|.+.++|.+|+ .|||..|.| +.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG-----------~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVG-----------KVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTS-----------CEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcC-----------CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 478999999999999999999999 6777766544696 999999999999999 999999988 6899
Q ss_pred EeCCCCCC
Q psy2204 124 IRRPHDYQ 131 (231)
Q Consensus 124 V~~~~~~~ 131 (231)
|.+++...
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99887543
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=110.66 Aligned_cols=76 Identities=26% Similarity=0.351 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-CcEEEEEecCHHHHHHHHHhCCCeecCceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSIDETTQAMAFDGINFKGQSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-kg~aFV~F~~~~~a~~Al~lng~~l~gr~i 122 (231)
..+++|||+|||+++|+++|+++|++|| .|.++++.++ ||||||+|.+.++|++++.. ...+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYG-----------DVMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTS-----------CCCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcC-----------CeeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEEE
Confidence 4578999999999999999999999999 7888887654 89999999999999876532 456689999
Q ss_pred EEeCCCCCC
Q psy2204 123 KIRRPHDYQ 131 (231)
Q Consensus 123 ~V~~~~~~~ 131 (231)
+|.++.+..
T Consensus 71 ~v~~a~~~~ 79 (88)
T 1wf0_A 71 HISNAEPKH 79 (88)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999887544
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=7.1e-16 Score=116.36 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec-CCCcE-EEEEecCHHHHHHHH-HhCCCeecC--ce
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNF-AFLEFRSIDETTQAM-AFDGINFKG--QS 121 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-~~kg~-aFV~F~~~~~a~~Al-~lng~~l~g--r~ 121 (231)
-+|||+||++.+|+++|+++|++|| .|.++.+. +.+|| |||+|.+.++|.+|+ .|||..|.| +.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG-----------~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFG-----------TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSS-----------CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcC-----------CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 4688999999999999999999999 66666553 34687 999999999999999 999999998 89
Q ss_pred EEEeCCCCC
Q psy2204 122 LKIRRPHDY 130 (231)
Q Consensus 122 i~V~~~~~~ 130 (231)
|+|.+++..
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999988754
No 173
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=4.8e-17 Score=124.53 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCce
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~ 121 (231)
.....++|||+|||+++|+++|+++|++|| +..+. .+.+. ..++||||||+|.+.++|.+||.+|+..|.||.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~-----i~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH-----IEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE-----CCCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE-----EEECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 345678999999999999999999999999 33332 12222 256689999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy2204 122 LKIRRPHDY 130 (231)
Q Consensus 122 i~V~~~~~~ 130 (231)
|+|..+...
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999876543
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=1e-16 Score=115.71 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
...+++|||+|||+++++++|+++|+.|| .|.++++.+ .+|||||+|.+.++|.+|+. ++..+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~ 73 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYG-----------SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINF 73 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC-----------CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeE
Confidence 34568999999999999999999999999 666666644 47999999999999999999 99999
Q ss_pred cCceEEEeCCCCC
Q psy2204 118 KGQSLKIRRPHDY 130 (231)
Q Consensus 118 ~gr~i~V~~~~~~ 130 (231)
.|+.|.|.++...
T Consensus 74 ~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 74 HGKKLKLGPAIRK 86 (102)
T ss_dssp TTEECEEEEEEEC
T ss_pred CCEEEEEEECCcC
Confidence 9999999877543
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=121.18 Aligned_cols=77 Identities=19% Similarity=0.387 Sum_probs=68.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec-----CCCcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-----LDKNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-----~~kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
....+++|||+|||+++++++|+++|++|| .|.++.+. +++|||||+|.+.++|.+|+ .|||.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-----------~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFG-----------TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTS-----------CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----------CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 445678999999999999999999999999 66666664 45799999999999999999 89999
Q ss_pred eecCceEEEeCCCC
Q psy2204 116 NFKGQSLKIRRPHD 129 (231)
Q Consensus 116 ~l~gr~i~V~~~~~ 129 (231)
.|.|+.|+|.++..
T Consensus 153 ~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 153 PLDGRPMDIQLVAS 166 (177)
T ss_dssp BCSSSBCEEEEESS
T ss_pred EECCEEEEEEEecC
Confidence 99999999998764
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=110.53 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=58.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe---cCCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 41 TITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI---NLDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 41 ~~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~---~~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.....+++|||+|||+++|+++|+++|++||.|. +. .+.+... +++||||||+|.+.++|.+|| .|+ .
T Consensus 3 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~-----~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~ 74 (114)
T 2dnl_A 3 SGSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD-----WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--E 74 (114)
T ss_dssp CSSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE-----CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--E
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE-----EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--h
Confidence 3456789999999999999999999999999443 11 1111111 366899999999999999999 773 3
Q ss_pred ecCceEEEeC
Q psy2204 117 FKGQSLKIRR 126 (231)
Q Consensus 117 l~gr~i~V~~ 126 (231)
++|+.|.+..
T Consensus 75 ~~G~~~~~~~ 84 (114)
T 2dnl_A 75 EDGKLYLCVS 84 (114)
T ss_dssp ETTEEEEEEC
T ss_pred cCCcEEEecc
Confidence 6666666653
No 177
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=7.6e-16 Score=127.76 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 43 TRQARRLYVGNIPFGV---------TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~---------te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
....++||||||++.+ ++++|+++|++|| .|.++++..+||||||+|.+.++|+.|+ .|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG-----------~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG-----------DIDRIRYVESKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS-----------CEEEEEEEGGGTEEEEEESSHHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC-----------CEEEEEEECCCCEEEEEeCCHHHHHHHHHHh
Confidence 4578999999999998 7999999999999 8999999999999999999999999999 99
Q ss_pred CCCee------------cCceEEEeCCCCC
Q psy2204 113 DGINF------------KGQSLKIRRPHDY 130 (231)
Q Consensus 113 ng~~l------------~gr~i~V~~~~~~ 130 (231)
+|..| .|+.|.|++++..
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CCCEEeccccccccccCCCCEEEEEEccCC
Confidence 99999 8999999998754
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=4.4e-15 Score=125.45 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCC-cEEEEEecCHHHHHHHH-HhCCCeec-
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDK-NFAFLEFRSIDETTQAM-AFDGINFK- 118 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~k-g~aFV~F~~~~~a~~Al-~lng~~l~- 118 (231)
.....++|||+|||+++++++|+++|++|| .|.++++.+++ |||||+|.+.++|.+|+ .|||..|.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-----------~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 271 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFP-----------GFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQ 271 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcC-----------CeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCC
Confidence 344678999999999999999999999999 78888887765 99999999999999999 89999999
Q ss_pred CceEEEeCCC
Q psy2204 119 GQSLKIRRPH 128 (231)
Q Consensus 119 gr~i~V~~~~ 128 (231)
|+.|+|.+++
T Consensus 272 g~~l~v~~ak 281 (282)
T 3pgw_A 272 NNAMKISFAK 281 (282)
T ss_pred CCEEEEEEec
Confidence 9999999875
No 179
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=2.3e-15 Score=122.66 Aligned_cols=75 Identities=13% Similarity=0.403 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC----CCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL----DKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~----~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
..++|||+|||+++|+++|+++|+.|| .|.++++.+ +||||||+|.+.++|.+|| .|||..|.|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-----------~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFG-----------NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccccceECCcccccHHHHHHHHHhhcC-----------CeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 346899999999999999999999999 677766643 3799999999999999999 999999999
Q ss_pred ceEEEeCCCCC
Q psy2204 120 QSLKIRRPHDY 130 (231)
Q Consensus 120 r~i~V~~~~~~ 130 (231)
++|.|.+++++
T Consensus 171 ~~i~V~~a~~~ 181 (213)
T 4f02_A 171 RKVFVGRFKSR 181 (213)
T ss_dssp EECEEEECCCH
T ss_pred EEEEEEEcCCC
Confidence 99999987643
No 180
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5e-15 Score=114.62 Aligned_cols=76 Identities=21% Similarity=0.479 Sum_probs=67.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.....++|||+|||+++|+++|+++|++|| .|.++++.+ ++|||||+|.+.++|.+|+ .|||
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-----------~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFP-----------SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTST-----------TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccC-----------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 445678999999999999999999999999 666666643 3789999999999999999 8999
Q ss_pred CeecCceEEEeCCC
Q psy2204 115 INFKGQSLKIRRPH 128 (231)
Q Consensus 115 ~~l~gr~i~V~~~~ 128 (231)
..+.|+.|+|.+++
T Consensus 152 ~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 152 QDLNGRPLRINWAA 165 (166)
T ss_dssp CEETTEECEEEESC
T ss_pred CccCCcEEEEEecC
Confidence 99999999999875
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=5.2e-15 Score=119.74 Aligned_cols=76 Identities=18% Similarity=0.436 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
...++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-----------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 191 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFG-----------KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFD 191 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccC-----------CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCE
Confidence 4568999999999999999999999999 6777777544 799999999999999999 899999
Q ss_pred ecCceEEEeCCCCC
Q psy2204 117 FKGQSLKIRRPHDY 130 (231)
Q Consensus 117 l~gr~i~V~~~~~~ 130 (231)
|.|+.|.|.++...
T Consensus 192 ~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 192 LGGQYLRVGKAVTP 205 (216)
T ss_dssp CSSSBCEEEECSSC
T ss_pred eCCcEEEEEEecCC
Confidence 99999999988754
No 182
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=7e-15 Score=114.82 Aligned_cols=73 Identities=27% Similarity=0.547 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
...++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-----------~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFG-----------PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTS-----------CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcC-----------CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 3478999999999999999999999999 6777766544 699999999999999999 899999
Q ss_pred ecCceEEEeCC
Q psy2204 117 FKGQSLKIRRP 127 (231)
Q Consensus 117 l~gr~i~V~~~ 127 (231)
+.|+.|.|.++
T Consensus 161 ~~g~~l~V~~A 171 (172)
T 2g4b_A 161 LGDKKLLVQRA 171 (172)
T ss_dssp ETTEECEEEEC
T ss_pred ECCeEEEEEeC
Confidence 99999999875
No 183
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=8.6e-15 Score=116.86 Aligned_cols=78 Identities=26% Similarity=0.503 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng 114 (231)
.....++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-----------~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 178 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFG-----------PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 178 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBS-----------CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-----------CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 346779999999999999999999999999 6777766544 799999999999999999 8999
Q ss_pred CeecCceEEEeCCCCC
Q psy2204 115 INFKGQSLKIRRPHDY 130 (231)
Q Consensus 115 ~~l~gr~i~V~~~~~~ 130 (231)
..+.|+.|+|.++++.
T Consensus 179 ~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 179 MQLGDKKLLVQRASVG 194 (198)
T ss_dssp CEETTEECEEEESCCC
T ss_pred CEECCEEEEEEECCCC
Confidence 9999999999988754
No 184
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=1.2e-14 Score=130.83 Aligned_cols=76 Identities=17% Similarity=0.345 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
...++|||+|||+++|+++|+++|++|| .|..+.+. +.+|||||+|.+.++|.+|| .|||..
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G-----------~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYG-----------PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-----------CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 4568999999999999999999999999 55555554 44899999999999999999 999999
Q ss_pred ecCceEEEeCCCCC
Q psy2204 117 FKGQSLKIRRPHDY 130 (231)
Q Consensus 117 l~gr~i~V~~~~~~ 130 (231)
|.|+.|.|.++...
T Consensus 169 i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 169 IDGRRVLVDVERGR 182 (437)
T ss_pred ECCEEEEEEEeCCC
Confidence 99999999987643
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=6.9e-15 Score=118.47 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC-----CCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL-----DKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~-----~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
..++|||+|||+++|+++|+++|++|| .|.++++.+ .+|||||+|.+.++|.+|+...+..+.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-----------~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKG-----------QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSC-----------CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCC-----------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 458999999999999999999999999 676666643 4799999999999999999655679999
Q ss_pred ceEEEeCCCCCC
Q psy2204 120 QSLKIRRPHDYQ 131 (231)
Q Consensus 120 r~i~V~~~~~~~ 131 (231)
+.|.|.+.+.|.
T Consensus 177 r~l~V~~~~~y~ 188 (193)
T 2voo_A 177 TDLLILFKDDYF 188 (193)
T ss_dssp EECEEEETTTC-
T ss_pred EEEEEEEhHHHH
Confidence 999999887764
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=6.6e-15 Score=115.53 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeee-EecCCCcEEEEEecCHHHHHHHH-HhCCCeecC
Q psy2204 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC-QINLDKNFAFLEFRSIDETTQAM-AFDGINFKG 119 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~-~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~g 119 (231)
.....++|||+|||+++|+++|+++|++|| .|..+ ...+++|||||+|.+.++|.+|+ .|||..+.|
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g-----------~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDAL-----------EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCS-----------EEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcC-----------eEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 334678999999999999999999999999 45544 33566899999999999999999 899999999
Q ss_pred ceEEEeCCCC
Q psy2204 120 QSLKIRRPHD 129 (231)
Q Consensus 120 r~i~V~~~~~ 129 (231)
+.|+|.++++
T Consensus 164 ~~i~v~~a~~ 173 (175)
T 1fje_B 164 RSVSLYYTGE 173 (175)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEecCC
Confidence 9999998764
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=8e-15 Score=113.96 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec------CCCcEEEEEecCHHHHHHHHHhCCCeec
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN------LDKNFAFLEFRSIDETTQAMAFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~------~~kg~aFV~F~~~~~a~~Al~lng~~l~ 118 (231)
..++|||+|||+++++++|+++|+.|| .|.++++. +++|||||+|.+.++|.+|+.+|+..+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWG-----------TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTS-----------CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCc-----------cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 357999999999999999999999999 56666554 4468999999999999999999999999
Q ss_pred CceEEEeCCCCC
Q psy2204 119 GQSLKIRRPHDY 130 (231)
Q Consensus 119 gr~i~V~~~~~~ 130 (231)
|++|+|.++.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999988653
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.54 E-value=1.2e-14 Score=115.80 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC------CCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL------DKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~------~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
...++|||+|||+++|+++|+++|+.|| .|.++++.+ ++|||||+|.+.++|.+|+..++..|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~ 170 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYG-----------KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV 170 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCC-----------CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEE
Confidence 4568999999999999999999999999 676666643 37999999999999999996689999
Q ss_pred cCceEEEeCCCCCCC
Q psy2204 118 KGQSLKIRRPHDYQP 132 (231)
Q Consensus 118 ~gr~i~V~~~~~~~~ 132 (231)
.|+.|.|.++.+...
T Consensus 171 ~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 171 NGHNCEVRKALSKQE 185 (196)
T ss_dssp TTEECEEEECC----
T ss_pred CCEEEEEEecCChhH
Confidence 999999998876543
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=2.1e-14 Score=112.19 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
...++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-----------~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFG-----------QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCC-----------CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3568999999999999999999999999 6777666544 799999999999999999 9999888
Q ss_pred c---CceEEEeCC
Q psy2204 118 K---GQSLKIRRP 127 (231)
Q Consensus 118 ~---gr~i~V~~~ 127 (231)
. +++|.|.++
T Consensus 162 ~~g~~~~l~V~~a 174 (175)
T 3nmr_A 162 MEGCSSPMVVKFA 174 (175)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCCCCeEEEec
Confidence 6 499999875
No 190
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=3.7e-14 Score=110.14 Aligned_cols=74 Identities=26% Similarity=0.477 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
....++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-----------~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYG-----------SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCC-----------cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999 6777766544 589999999999999999 89999
Q ss_pred eecC--ceEEEeCC
Q psy2204 116 NFKG--QSLKIRRP 127 (231)
Q Consensus 116 ~l~g--r~i~V~~~ 127 (231)
.+.| ++|+|.++
T Consensus 155 ~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 155 IPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred EecCCCeEEEEEeC
Confidence 9988 99998763
No 191
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=5.1e-14 Score=102.52 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec-------CCCcEEEEEecCHHHHHHHH
Q psy2204 43 TRQARRLYVGNIPF-----GVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-------LDKNFAFLEFRSIDETTQAM 110 (231)
Q Consensus 43 ~~~~r~lfVgNLp~-----~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-------~~kg~aFV~F~~~~~a~~Al 110 (231)
..++++|+|+||.. +-++++|+++|++|| .|.++.+. +++|||||+|.+.++|.+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G-----------~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai 73 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYG-----------KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAV 73 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGS-----------CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC-----------CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHH
Confidence 35688999999963 237899999999999 56666553 34799999999999999999
Q ss_pred -HhCCCeecCceEEEeCCC
Q psy2204 111 -AFDGINFKGQSLKIRRPH 128 (231)
Q Consensus 111 -~lng~~l~gr~i~V~~~~ 128 (231)
.|||..|.||.|.|.++.
T Consensus 74 ~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 74 VDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp HHHTTCEETTEECEEEECC
T ss_pred HHHCCCEECCcEEEEEEcC
Confidence 999999999999999765
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.1e-14 Score=108.92 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=61.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecC----HHH----HHHHH---H
Q psy2204 47 RRLYVGNI----PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS----IDE----TTQAM---A 111 (231)
Q Consensus 47 r~lfVgNL----p~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~----~~~----a~~Al---~ 111 (231)
.+|||+|| |+.+++++|+++|+.||.|.++. .+.+-.+++++|||||+|.+ .++ |.+|+ .
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~-----li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFE-----AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEE-----EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEE-----EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 68999999 99999999999999999555543 34444456668999999996 333 77887 3
Q ss_pred hCCCeecCceEEEeCCC
Q psy2204 112 FDGINFKGQSLKIRRPH 128 (231)
Q Consensus 112 lng~~l~gr~i~V~~~~ 128 (231)
+||..|.||.|+|...+
T Consensus 78 lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 78 SSGCFIMGFKFEVILNK 94 (136)
T ss_dssp TTCEEETTEEEEEEECC
T ss_pred hcCCeecCcEEEEEECc
Confidence 79999999999999544
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=6.2e-14 Score=108.49 Aligned_cols=73 Identities=22% Similarity=0.459 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC------CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~------kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
...++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G-----------~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYG-----------RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcC-----------CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 4567999999999999999999999999 6777666433 699999999999999999 899999
Q ss_pred ecCce--EEEeCC
Q psy2204 117 FKGQS--LKIRRP 127 (231)
Q Consensus 117 l~gr~--i~V~~~ 127 (231)
+.|+. |+|.++
T Consensus 155 ~~g~~~~i~v~~A 167 (167)
T 1fxl_A 155 PSGATEPITVKFA 167 (167)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCccceEEEeC
Confidence 99975 777653
No 194
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=9.6e-14 Score=120.84 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=66.1
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 42 ITRQARRLYVGN--IPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 42 ~~~~~r~lfVgN--Lp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
.+.++++||||| |++++|+++|+++|++|| .|.++.+..+||||||+|++.++|++|+ .|||+++.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G-----------~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCG-----------LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTS-----------CEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC-----------CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 356788999999 578999999999999999 7888888889999999999999999999 99999884
Q ss_pred ---Cc--eEEEeCC
Q psy2204 119 ---GQ--SLKIRRP 127 (231)
Q Consensus 119 ---gr--~i~V~~~ 127 (231)
|+ .|.+.+.
T Consensus 83 ~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 83 DDLGQKITLYLNFV 96 (345)
T ss_dssp CTTSCEEECEEEEC
T ss_pred cccCCceEEEEEEe
Confidence 45 5677655
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.5e-13 Score=112.98 Aligned_cols=76 Identities=20% Similarity=0.382 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEe-cCCCcEEEEEecCHHHHHHHH-HhCCCeec-Cc
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQI-NLDKNFAFLEFRSIDETTQAM-AFDGINFK-GQ 120 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~-~~~kg~aFV~F~~~~~a~~Al-~lng~~l~-gr 120 (231)
.++++|||+|||+++++++|+++|+.||. .|.++++ .+++|||||+|.+.++|.+|+ .|||..+. |+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~----------~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 218 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGG----------VVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENH 218 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSC----------CEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCC----------CeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCC
Confidence 45789999999999999999999999981 3666667 447899999999999999999 89999999 99
Q ss_pred eEEEeCCCC
Q psy2204 121 SLKIRRPHD 129 (231)
Q Consensus 121 ~i~V~~~~~ 129 (231)
.|+|.++++
T Consensus 219 ~l~v~~a~~ 227 (229)
T 2adc_A 219 HLRVSFSKS 227 (229)
T ss_dssp BCEEEECSS
T ss_pred eEEEEEecC
Confidence 999998864
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.9e-13 Score=100.40 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHHHHhhhhhhccccCCCCeeeeEec--CCCcEEEEEecCHHHHHH
Q psy2204 42 ITRQARRLYVGNIPFGVT-----------EDEMMEFFNQQMHLSGLAQAAGNPVLACQIN--LDKNFAFLEFRSIDETTQ 108 (231)
Q Consensus 42 ~~~~~r~lfVgNLp~~~t-----------e~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~--~~kg~aFV~F~~~~~a~~ 108 (231)
....+++|+|.||....+ +++|+++|++|| .|.++.+. ..+|||||+|.+.++|.+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G-----------~v~~v~i~~~~~~G~afV~f~~~~~A~~ 79 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG-----------QIRKLLLFDRHPDGVASVSFRDPEEADY 79 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS-----------CCSEEEEETTCTTCEEEEECSCHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC-----------CEeEEEEecCCCCEEEEEEECCHHHHHH
Confidence 335688999999944332 589999999999 56555442 358999999999999999
Q ss_pred HH-HhCCCeecCceEEEeCCCCC
Q psy2204 109 AM-AFDGINFKGQSLKIRRPHDY 130 (231)
Q Consensus 109 Al-~lng~~l~gr~i~V~~~~~~ 130 (231)
|+ .|||..|.||.|+|.++.+.
T Consensus 80 Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 80 CIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHcCCCEECCcEEEEEEeCCC
Confidence 99 99999999999999987653
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=2e-13 Score=109.32 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec-CCCcEEEEEecCHHHHHHHH-HhCCCeec-Cc
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDETTQAM-AFDGINFK-GQ 120 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-~~kg~aFV~F~~~~~a~~Al-~lng~~l~-gr 120 (231)
.++++|||+|||+++++++|+++|+.||. .|.++++. .++|||||+|.+.++|.+|+ .|||..+. |+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~----------~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 187 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGG----------VVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENH 187 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTS----------CCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCC----------CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Confidence 45789999999999999999999999981 35566663 46899999999999999999 89999999 99
Q ss_pred eEEEeCCCC
Q psy2204 121 SLKIRRPHD 129 (231)
Q Consensus 121 ~i~V~~~~~ 129 (231)
.|+|.++++
T Consensus 188 ~l~v~~a~~ 196 (198)
T 1qm9_A 188 HLRVSFSKS 196 (198)
T ss_dssp SCCEEEECC
T ss_pred eEEEEeecc
Confidence 999998764
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.1e-13 Score=112.29 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=58.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCe--eeeEecCC----CcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPV--LACQINLD----KNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i--~~~~~~~~----kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.++++|||+|||+++|+++|+++|++|| .| .++++..+ +|||||+|.+.++|.+|| .|||..
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G-----------~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELG-----------VKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHT-----------CCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcC-----------CcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999 45 55655443 589999999999999999 999999
Q ss_pred ecCc
Q psy2204 117 FKGQ 120 (231)
Q Consensus 117 l~gr 120 (231)
|.|+
T Consensus 190 ~~g~ 193 (205)
T 3tyt_A 190 MKNP 193 (205)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 9886
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=2.2e-12 Score=93.85 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=62.2
Q ss_pred CCCCeEEEcCCC--CCCC--------HHHHHHHHHHhhhhhhccccCCCCeeeeEecC--------CCcEEEEEecCHHH
Q psy2204 44 RQARRLYVGNIP--FGVT--------EDEMMEFFNQQMHLSGLAQAAGNPVLACQINL--------DKNFAFLEFRSIDE 105 (231)
Q Consensus 44 ~~~r~lfVgNLp--~~~t--------e~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~--------~kg~aFV~F~~~~~ 105 (231)
.+++.|.+.|+= .++. +++|++.|++|| .|.++++.+ .+|++||+|.+.++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G-----------~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~ 71 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG-----------LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFD 71 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS-----------CEEEEECCCCBTTBCCTTTTEEEEEESSHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC-----------CEEEEEEeccCCCCCcCCcEEEEEEECCHHH
Confidence 467899999983 3333 369999999999 777777754 47999999999999
Q ss_pred HHHHH-HhCCCeecCceEEEeCCC
Q psy2204 106 TTQAM-AFDGINFKGQSLKIRRPH 128 (231)
Q Consensus 106 a~~Al-~lng~~l~gr~i~V~~~~ 128 (231)
|.+|+ .|||..|.||.|.|.+..
T Consensus 72 A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 72 CQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHhCCCEeCCCEEEEEEeC
Confidence 99999 999999999999998653
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.33 E-value=1.8e-12 Score=108.60 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec-----CCCcEEEEEecCHHHHHHHH-Hh-CCCe
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-----LDKNFAFLEFRSIDETTQAM-AF-DGIN 116 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-----~~kg~aFV~F~~~~~a~~Al-~l-ng~~ 116 (231)
.++++|||+|||+++|+++|+++|+.|| .|.++++. +++|||||+|.+.++|.+|+ .| ++..
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G-----------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFG-----------PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGS-----------CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcC-----------CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 3567999999999999999999999999 55555553 44899999999999999999 88 5555
Q ss_pred ec---CceEEEeCCCCCC
Q psy2204 117 FK---GQSLKIRRPHDYQ 131 (231)
Q Consensus 117 l~---gr~i~V~~~~~~~ 131 (231)
+. +|+|.|.+.....
T Consensus 163 ~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp ESSSSCCBCEEEECCCEE
T ss_pred EecCCCceEEEeeccccC
Confidence 54 8999999776543
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-11 Score=88.15 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEec-CCCcEEEEEecCHHHHHHHH-HhCCCe
Q psy2204 46 ARRLYVGNIP-------FGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN-LDKNFAFLEFRSIDETTQAM-AFDGIN 116 (231)
Q Consensus 46 ~r~lfVgNLp-------~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~-~~kg~aFV~F~~~~~a~~Al-~lng~~ 116 (231)
.++|-|.-.. .++++++|+++|++|| .|.++.+. +.||||||+|.+.++|.+|+ .++ .
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G-----------~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYG-----------EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--G 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTS-----------CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--B
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcC-----------CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--C
Confidence 5567666543 4689999999999999 78888775 66899999999999999999 644 4
Q ss_pred ecCceEEEeCCCCCC
Q psy2204 117 FKGQSLKIRRPHDYQ 131 (231)
Q Consensus 117 l~gr~i~V~~~~~~~ 131 (231)
+.|++|+|.+++...
T Consensus 77 ~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 77 LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSSSBCEEECSSCCC
T ss_pred CCCCeEEEEEccCCC
Confidence 689999999887543
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=4.1e-13 Score=97.53 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=56.0
Q ss_pred EcCCCCCCCHHHHHHHH------------HHhhhhhhccccCCCCeeeeEecCC-----CcEEEEEecCHHHHHHHH-Hh
Q psy2204 51 VGNIPFGVTEDEMMEFF------------NQQMHLSGLAQAAGNPVLACQINLD-----KNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 51 VgNLp~~~te~~L~~~F------------~~~G~~~~~~~~~~~~i~~~~~~~~-----kg~aFV~F~~~~~a~~Al-~l 112 (231)
+.||++.+++++|++.| ++|| .|.++++.++ +|||||+|.+.++|.+|+ .|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G-----------~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG-----------EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC-----------ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 56777778888777766 9999 7777777654 799999999999999999 99
Q ss_pred CCCeecCceEEEeCC
Q psy2204 113 DGINFKGQSLKIRRP 127 (231)
Q Consensus 113 ng~~l~gr~i~V~~~ 127 (231)
||..+.||.|+|.++
T Consensus 89 ng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 89 NNRWFNGQPIHAELS 103 (104)
T ss_dssp TTCEETTEECCEEEC
T ss_pred CCCEECCEEEEEEEc
Confidence 999999999999864
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.26 E-value=7.1e-12 Score=93.01 Aligned_cols=73 Identities=22% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHHHhhhhhhccccCCCCeeeeEecC----------CCcEEEEEecCHHHHHHH
Q psy2204 45 QARRLYVGNIPF--G---VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINL----------DKNFAFLEFRSIDETTQA 109 (231)
Q Consensus 45 ~~r~lfVgNLp~--~---~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~----------~kg~aFV~F~~~~~a~~A 109 (231)
+++.|++.|+-. + -.+++|++.|++|| .|.++.+.+ .+|++||+|.+.++|.+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G-----------~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~A 87 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG-----------AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKA 87 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS-----------CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC-----------CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHH
Confidence 578999999942 1 23689999999999 555555432 358999999999999999
Q ss_pred H-HhCCCeecCceEEEeCCC
Q psy2204 110 M-AFDGINFKGQSLKIRRPH 128 (231)
Q Consensus 110 l-~lng~~l~gr~i~V~~~~ 128 (231)
+ .|||..|.||.|.|.+..
T Consensus 88 i~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 88 IQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHTTCEETTEECEEEEEC
T ss_pred HHHHCCCEECCcEEEEEEcC
Confidence 9 999999999999998654
No 204
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.25 E-value=2.2e-11 Score=94.21 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=66.9
Q ss_pred CCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCC
Q psy2204 91 LDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL 169 (231)
Q Consensus 91 ~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~ 169 (231)
+.+|||||+|.+.++|++|+ .+++....+..+.+.............. ...........++|||+|||+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSH--------HHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCC--------CSSCCCCCCBCCEEEEESCCTTC
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccc--------ccccccCCCCCCEEEEeCCCCCC
Confidence 45899999999999999999 8776443333333332211000000000 00111112345899999999999
Q ss_pred CHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 170 NED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 170 tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
|++ +|+..|||..|.|+.|+|++|.+..
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 998 8999999999999999999998653
No 205
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.23 E-value=7.1e-12 Score=96.39 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=74.9
Q ss_pred CCcEEEEEecCHHHHHHHH-Hh-CCCeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCC
Q psy2204 92 DKNFAFLEFRSIDETTQAM-AF-DGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYL 169 (231)
Q Consensus 92 ~kg~aFV~F~~~~~a~~Al-~l-ng~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~ 169 (231)
-+|+++|+|.+.++|++|+ .+ ||..++| .|.+.++............ .............++|||+|||+++
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-----HHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-----CCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-----ccccccccCCCCCCEEEEeCCCCCC
Confidence 3799999999999999999 99 9999999 9999977542211000000 0000111223456899999999999
Q ss_pred CHH------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 170 NED------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 170 tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
|++ .|+..|||..|.|+.|+|+++.+.
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 998 899999999999999999999865
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=3.6e-11 Score=88.65 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC--CcEEEEEecCHHHHHHHH-
Q psy2204 44 RQARRLYVGNIPFGV----------TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD--KNFAFLEFRSIDETTQAM- 110 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~----------te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~--kg~aFV~F~~~~~a~~Al- 110 (231)
.+++.|.+.|+=..- .+++|++.|++|| .|.++.+.++ +|++||+|.+.++|.+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG-----------~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~ 73 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG-----------GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVN 73 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT-----------CCSEEEECTTCTTCCEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC-----------CEEEEEEecCCCcEEEEEEECCHHHHHHHHH
Confidence 357788888884322 2358899999999 6777777655 799999999999999999
Q ss_pred HhCCCeecCceEEEeCCC
Q psy2204 111 AFDGINFKGQSLKIRRPH 128 (231)
Q Consensus 111 ~lng~~l~gr~i~V~~~~ 128 (231)
.|||..|.||.|.|.+..
T Consensus 74 ~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 74 ALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEECCEEEEEEEEc
Confidence 999999999999998653
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4e-10 Score=83.62 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=66.8
Q ss_pred CCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecC-HHHHHHHH-Hh--C
Q psy2204 39 GSTITRQARRLYVGNIPFG-VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS-IDETTQAM-AF--D 113 (231)
Q Consensus 39 ~~~~~~~~r~lfVgNLp~~-~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~-~~~a~~Al-~l--n 113 (231)
++-.-....-|||+||+++ +++++|+++|++|| .|..|++.++...|||+|.+ .++|..|+ .+ +
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G-----------~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHG-----------EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSC-----------CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTS
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcC-----------CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcC
Confidence 3444456779999999999 99999999999999 89999999999999999999 89999999 88 4
Q ss_pred CCeecCceEEEe
Q psy2204 114 GINFKGQSLKIR 125 (231)
Q Consensus 114 g~~l~gr~i~V~ 125 (231)
+..|.|..+++.
T Consensus 80 ~~~i~g~~~~~e 91 (121)
T 1owx_A 80 NLQLRNKEVTWE 91 (121)
T ss_dssp CBCTTSSSEEEE
T ss_pred CcEEeCcEEEEE
Confidence 778888877775
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=5.4e-10 Score=78.26 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=59.6
Q ss_pred CeEEEcCCC----CCCCH----HHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeec
Q psy2204 47 RRLYVGNIP----FGVTE----DEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFK 118 (231)
Q Consensus 47 r~lfVgNLp----~~~te----~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~ 118 (231)
-||+|.-.+ .+.-. .+|.+.|++|| .|+.+++..++ +||+|.+.++|.+||.|||..+.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-----------~Vi~vr~~~d~--~fVtF~d~~sAlaAi~mnG~~v~ 74 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFG-----------EVILIRFVEDK--MWVTFLEGSSALNVLSLNGKELL 74 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-----------CEEEEEECSSS--EEEEESSHHHHHHGGGGTTCEET
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCC-----------CeEEEEEecCC--EEEEECChHHHHHHHhcCCeEeC
Confidence 388888766 23333 57899999999 89999998776 89999999999999999999999
Q ss_pred CceEEEeCCCC
Q psy2204 119 GQSLKIRRPHD 129 (231)
Q Consensus 119 gr~i~V~~~~~ 129 (231)
||.|+|+..++
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999997653
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.8e-09 Score=75.05 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=59.2
Q ss_pred CeEEEcCCCCC-----CCH----HHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 47 RRLYVGNIPFG-----VTE----DEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 47 r~lfVgNLp~~-----~te----~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
-||+|.-++.+ +-. .+|.+.|++|| .+..+++..++ +||+|.+.++|.+||.|||..+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-----------~Vilvr~v~d~--~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-----------TIVLVRINQGQ--MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-----------CCSEEEEETTE--EEEECSCSHHHHHHHHGGGSEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-----------CEEEEEEecCc--EEEEEcChHHHHHHHhcCCeee
Confidence 49999988643 222 56899999999 78888888777 9999999999999999999999
Q ss_pred cCceEEEeCCC
Q psy2204 118 KGQSLKIRRPH 128 (231)
Q Consensus 118 ~gr~i~V~~~~ 128 (231)
.||.|+|+...
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999654
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.3e-07 Score=66.70 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCce
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQS 121 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~ 121 (231)
....|+|-+=|||-.+++..|+.+++.+-.+.. ..++.+.+..+-+-|+|+|.+..+|-+|. .|||.+|.||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~------g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINE------KDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCT------TTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCc------cceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 345789999999999999999999999921110 07899999899999999999999999998 99999999999
Q ss_pred EEEe
Q psy2204 122 LKIR 125 (231)
Q Consensus 122 i~V~ 125 (231)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9987
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.65 E-value=2.4e-08 Score=81.31 Aligned_cols=60 Identities=25% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhhhhhccccCCCCeeeeEec----------CCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEEeC
Q psy2204 58 VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQIN----------LDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRR 126 (231)
Q Consensus 58 ~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~----------~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~ 126 (231)
-.+++|++.|++|| .|.++.+. +.+|++||+|.+.++|.+|+ .|||..+.||.|.+.+
T Consensus 141 e~~~dl~~e~~~~G-----------~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFG-----------AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTS-----------CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHccC-----------CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 45679999999999 56666553 45799999999999999999 9999999999999986
Q ss_pred CC
Q psy2204 127 PH 128 (231)
Q Consensus 127 ~~ 128 (231)
..
T Consensus 210 ~~ 211 (222)
T 3dxb_A 210 YD 211 (222)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=5.5e-07 Score=64.11 Aligned_cols=92 Identities=23% Similarity=0.389 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHH---hhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecC
Q psy2204 43 TRQARRLYVGNIPFGVTEDEMMEFFNQ---QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKG 119 (231)
Q Consensus 43 ~~~~r~lfVgNLp~~~te~~L~~~F~~---~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~g 119 (231)
+.-.++|.|.|||.++.++.|.-+|++ .| |..|.+++... +-|+|+|.+.+.+++.|+...+.|.+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsG---------GG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~ 73 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSG---------GGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHG 73 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTC---------CCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSS
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCC---------CceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecC
Confidence 345679999999999999999999997 34 56899998866 88999999999999999877789999
Q ss_pred ceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCC
Q psy2204 120 QSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLN 170 (231)
Q Consensus 120 r~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t 170 (231)
..|.|.... ...++++++.+|+..++
T Consensus 74 ~~LsV~P~~-------------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 AQLSLRPAP-------------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp SBCEEEECC-------------------------CCCCCCCCCCSCCCCCC
T ss_pred eEEEEEcCC-------------------------CCCcceEeeecCCCCCC
Confidence 999997432 12346788888888764
No 213
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.55 E-value=3.6e-08 Score=74.44 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=41.1
Q ss_pred cEEEEEecCHHHHHHHH-HhCCCeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH
Q psy2204 94 NFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED 172 (231)
Q Consensus 94 g~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee 172 (231)
-|.|++|++...+..|+ .++|....|+. ...+..+ .......++|||+|||+++|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---------------------~~~~~~~~~l~V~nLp~~~te~ 62 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---------------------PPDVEGMTSLKVDNLTYRTSPD 62 (135)
T ss_dssp -------------------------------CCSCCS---------------------CSSGGGCCCEEEECCCSSCHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---------------------CCCCCCCCEEEEeCCCCCCCHH
Confidence 36788899999999999 89887766653 1111110 0112335899999999999998
Q ss_pred -----------------------------------------HHHHHhCCCeeCCeEEEEEEeecCcccc
Q psy2204 173 -----------------------------------------QAIAGLNGMQLGDKKLIVQRASVGAKNA 200 (231)
Q Consensus 173 -----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~~~ 200 (231)
+|+..|||..|.|+.|+|+++.......
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 8899999999999999999998664433
No 214
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.46 E-value=2.3e-07 Score=66.16 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=36.6
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||+++|++ +|++.|||..|.||.|+|++|.|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 4789999999999999 89999999999999999999975
No 215
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.34 E-value=5.2e-07 Score=70.09 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=38.8
Q ss_pred EEecCHHHHHHHH-HhCCCeec--CceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH--
Q psy2204 98 LEFRSIDETTQAM-AFDGINFK--GQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED-- 172 (231)
Q Consensus 98 V~F~~~~~a~~Al-~lng~~l~--gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee-- 172 (231)
.+|++.+++..++ .+++.... |+.+......... .........................++|||+|||+.++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA-IHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc-ccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 7899999999999 88887665 5554444322110 0000000000000000011112334689999999999998
Q ss_pred ---------------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 ---------------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 ---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
.||..|||..|.|+.|+|.+|.....
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 89999999999999999999986543
No 216
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=2.1e-06 Score=59.54 Aligned_cols=44 Identities=32% Similarity=0.507 Sum_probs=39.4
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
...++|||+|||+++|++ +|+..|||..+.|+.|+|+++.....
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 345899999999999998 89999999999999999999986644
No 217
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=2.5e-06 Score=59.40 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=39.3
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
...++|||+|||+++|++ +|+..|||..+.|+.|+|+++.....
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 345899999999999998 89999999999999999999986643
No 218
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=4.4e-06 Score=58.21 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=39.2
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCC-CeeCCeEEEEEEeecCcc
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGLNG-MQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG-~~i~gr~l~V~~a~~~~~ 198 (231)
...++|||+|||+++|++ +|+..||| ..+.|+.|+|+++.+...
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 345899999999999998 89999999 999999999999986543
No 219
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.20 E-value=1.9e-06 Score=62.83 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=37.6
Q ss_pred CCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
...+|||+|||+++|++ +|++.|||+.|.|+.|+|+++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 34689999999999999 899999999999999999999765
Q ss_pred c
Q psy2204 197 A 197 (231)
Q Consensus 197 ~ 197 (231)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 220
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=4.5e-06 Score=59.12 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=39.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|++.|||..|.|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456899999999999998 899999999999999999999
Q ss_pred ecCccc
Q psy2204 194 SVGAKN 199 (231)
Q Consensus 194 ~~~~~~ 199 (231)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 866443
No 221
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=3.8e-06 Score=59.49 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=39.4
Q ss_pred CCCCcEEEcCCCCCCCHH--------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 155 DSPHKIFIGGLPNYLNED--------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee--------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
...++|||+|||+++|++ +|+..|||+.|.|+.|+|++|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 456899999999999998 899999999999999999999866
Q ss_pred cc
Q psy2204 197 AK 198 (231)
Q Consensus 197 ~~ 198 (231)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 222
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.19 E-value=5.1e-06 Score=60.21 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.2
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||.+++++ +|++.|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345899999999999998 899999999999999999999
Q ss_pred ecCcccc
Q psy2204 194 SVGAKNA 200 (231)
Q Consensus 194 ~~~~~~~ 200 (231)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8664433
No 223
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.18 E-value=2.5e-06 Score=61.90 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=37.9
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||+++|++ +|++.|||..+.|+.|+|++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999 8999999999999999999997
Q ss_pred cC
Q psy2204 195 VG 196 (231)
Q Consensus 195 ~~ 196 (231)
.+
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 224
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=6.8e-06 Score=58.34 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=40.4
Q ss_pred CCCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 154 PDSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
....++|||+|||+++|++ +|+..|||..|.|+.|+|+++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 3456899999999999999 8999999999999999999998
Q ss_pred cCccc
Q psy2204 195 VGAKN 199 (231)
Q Consensus 195 ~~~~~ 199 (231)
.....
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 66443
No 225
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=4.5e-06 Score=59.09 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=39.5
Q ss_pred CCCCcEEEcCCCCCCCHH-------------------------------------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 155 DSPHKIFIGGLPNYLNED-------------------------------------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
...++|||+|||+++|++ +|+..|||..|.|+.|+|+++....
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 456899999999999998 8999999999999999999998664
Q ss_pred c
Q psy2204 198 K 198 (231)
Q Consensus 198 ~ 198 (231)
.
T Consensus 93 ~ 93 (101)
T 2fc9_A 93 S 93 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.16 E-value=1e-05 Score=57.56 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=39.2
Q ss_pred CCCcEEEcCCCCCCCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecCccc
Q psy2204 156 SPHKIFIGGLPNYLNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVGAKN 199 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~~ 199 (231)
..++|||+|||+++|++ +|+..|||..|.|+.|+|+++.+....
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 35899999999999998 899999999999999999999866443
No 227
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.5e-06 Score=58.18 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
....++|||+|||++++++ +|++.|||..|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3456899999999999999 89999999999999999999
Q ss_pred ee
Q psy2204 193 AS 194 (231)
Q Consensus 193 a~ 194 (231)
|.
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 228
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.15 E-value=3.4e-06 Score=57.60 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=36.1
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||.+++++ +|++.|||..+.|+.|+|++|.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999998 8999999999999999999974
No 229
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.14 E-value=3.2e-06 Score=57.49 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=36.2
Q ss_pred CcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 158 HKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 158 ~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.+|||+|||.+++++ +|+..|||..+.|+.|+|++|.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999998 899999999999999999999865
No 230
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=6.3e-06 Score=58.19 Aligned_cols=43 Identities=30% Similarity=0.543 Sum_probs=38.9
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||+++|++ +|++.|||..+.|+.|+|+++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 345899999999999998 8899999999999999999998
Q ss_pred cCc
Q psy2204 195 VGA 197 (231)
Q Consensus 195 ~~~ 197 (231)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 664
No 231
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.7e-06 Score=58.75 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=38.8
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.+++|||+|||.+++++ +|+..|||..|.|+.|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45899999999999998 8999999999999999999998
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
....
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6643
No 232
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=7.4e-06 Score=57.78 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
...++|||+|||+++|++ +|+..|||..|.|+.|+|+++.+..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 345899999999999998 88999999999999999999986644
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=5.9e-06 Score=59.34 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=39.4
Q ss_pred CCCCcEEEcCCCCCCCHH--------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 155 DSPHKIFIGGLPNYLNED--------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee--------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
...++|||+|||+++|++ +|++.|||..|.|+.|+|+++...
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 345899999999999998 899999999999999999999866
Q ss_pred cc
Q psy2204 197 AK 198 (231)
Q Consensus 197 ~~ 198 (231)
..
T Consensus 100 ~~ 101 (109)
T 1x4a_A 100 RG 101 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 234
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=4.9e-06 Score=59.12 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=39.4
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||.+++++ +|+..|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 345899999999999998 899999999999999999999
Q ss_pred ecCcc
Q psy2204 194 SVGAK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
.+...
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86644
No 235
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=9.2e-06 Score=57.63 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=39.4
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
...++|||+|||+.++++ +|+..|||..|.|+.|+|+++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 456899999999999998 89999999999999999999986
Q ss_pred Ccc
Q psy2204 196 GAK 198 (231)
Q Consensus 196 ~~~ 198 (231)
...
T Consensus 93 ~~~ 95 (103)
T 2cqi_A 93 PSS 95 (103)
T ss_dssp TTC
T ss_pred Ccc
Confidence 543
No 236
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=3.2e-06 Score=59.00 Aligned_cols=42 Identities=31% Similarity=0.404 Sum_probs=37.8
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|+..|||..+.|+.|+|++|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 345799999999999998 899999999999999999998
Q ss_pred ecC
Q psy2204 194 SVG 196 (231)
Q Consensus 194 ~~~ 196 (231)
..+
T Consensus 93 ~~g 95 (95)
T 2cqc_A 93 SSG 95 (95)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 237
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=4.6e-06 Score=59.26 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=39.3
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|+..|||..|.|+.|+|++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 345899999999999998 899999999999999999999
Q ss_pred ecCcc
Q psy2204 194 SVGAK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 238
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=4e-06 Score=59.43 Aligned_cols=45 Identities=29% Similarity=0.525 Sum_probs=39.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|++.|||..|.|+.|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346899999999999998 899999999999999999999
Q ss_pred ecCccc
Q psy2204 194 SVGAKN 199 (231)
Q Consensus 194 ~~~~~~ 199 (231)
......
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 866443
No 239
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.12 E-value=9.5e-06 Score=58.81 Aligned_cols=44 Identities=32% Similarity=0.466 Sum_probs=39.3
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|++.|||..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 345899999999999998 899999999999999999999
Q ss_pred ecCcc
Q psy2204 194 SVGAK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86643
No 240
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=5.8e-06 Score=58.21 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=38.9
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||.++|++ +|+..|||..|.|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999998 8899999999999999999998
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
....
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 6643
No 241
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=7.3e-06 Score=57.64 Aligned_cols=42 Identities=29% Similarity=0.467 Sum_probs=38.4
Q ss_pred CCCCcEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 155 DSPHKIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
...++|||+|||+++|++ +|+..|||..|.|+.|+|+++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 345899999999999998 899999999999999999999865
No 242
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.11 E-value=2.6e-06 Score=59.57 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=35.9
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.+++|||+|||+++|++ +|++.|||+.|.||.|+|++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35799999999999998 8999999999999999999987
Q ss_pred c
Q psy2204 195 V 195 (231)
Q Consensus 195 ~ 195 (231)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 243
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.10 E-value=4.8e-06 Score=58.44 Aligned_cols=41 Identities=29% Similarity=0.504 Sum_probs=37.6
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||.+++++ +|++.|||..++|+.|+|++|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4789999999999998 89999999999999999999986
Q ss_pred Cc
Q psy2204 196 GA 197 (231)
Q Consensus 196 ~~ 197 (231)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 244
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=5.8e-06 Score=58.88 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=40.0
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
....++|||+|||+++|++ +|+..|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999999998 89999999999999999999
Q ss_pred eecCcc
Q psy2204 193 ASVGAK 198 (231)
Q Consensus 193 a~~~~~ 198 (231)
+....+
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 986644
No 245
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=5.9e-06 Score=59.41 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=39.8
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
....++|||+|||.+++++ +|+..|||..|.|+.|+|+++.....
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 3446899999999999998 89999999999999999999986643
No 246
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.09 E-value=6.2e-06 Score=56.58 Aligned_cols=40 Identities=23% Similarity=0.450 Sum_probs=37.1
Q ss_pred CCcEEEcCCCCCCCHH------------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 157 PHKIFIGGLPNYLNED------------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee------------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
+++|||+|||+++|++ +|+..|||..+.|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 4799999999999999 8999999999999999999997
Q ss_pred cC
Q psy2204 195 VG 196 (231)
Q Consensus 195 ~~ 196 (231)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 247
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=4e-06 Score=58.11 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=39.7
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecCccc
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVGAKN 199 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~~ 199 (231)
...++|||+|||.++|++ +|+..|||..+.|+.|+|+++....+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 345899999999999998 889999999999999999999866443
No 248
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=5.7e-06 Score=58.13 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=38.0
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|++.|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345789999999999998 899999999999999999998
Q ss_pred ecC
Q psy2204 194 SVG 196 (231)
Q Consensus 194 ~~~ 196 (231)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 249
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.08 E-value=4e-06 Score=57.51 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=36.0
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||.+++++ +|+..|||..+.|+.|+|++|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34789999999999998 8999999999999999999997
Q ss_pred cC
Q psy2204 195 VG 196 (231)
Q Consensus 195 ~~ 196 (231)
+.
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 53
No 250
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.08 E-value=5.9e-07 Score=80.60 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=38.1
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||+.+|++ .||..|||..|.|+.|+|.+|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999998 899999999999999999999
Q ss_pred ecC
Q psy2204 194 SVG 196 (231)
Q Consensus 194 ~~~ 196 (231)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 854
No 251
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.07 E-value=4.1e-06 Score=58.50 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=35.4
Q ss_pred CcEEEcCCCCCCCHH------------------------------------------HHHHHh-CCCeeCCeEEEEEEee
Q psy2204 158 HKIFIGGLPNYLNED------------------------------------------QAIAGL-NGMQLGDKKLIVQRAS 194 (231)
Q Consensus 158 ~~ifV~nLp~~~tee------------------------------------------~Ai~~l-nG~~i~gr~l~V~~a~ 194 (231)
++|||+|||+++|++ +|++.| |+..++||.|+|++|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 689999999999999 778777 4678999999999998
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
+..+
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6644
No 252
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.07 E-value=6.9e-06 Score=57.97 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=38.0
Q ss_pred CCCCcEEEcCCCC-CCCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 155 DSPHKIFIGGLPN-YLNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 155 ~~~~~ifV~nLp~-~~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
...++|||+|||+ +++++ +|+..|||..+.|+.|+|+++...
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 3458999999998 99998 899999999999999999999754
No 253
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=8e-06 Score=57.39 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=37.4
Q ss_pred CCcEEEcCCCCCCCHH------------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 157 PHKIFIGGLPNYLNED------------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee------------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.++|||+|||++++++ +|+..|||..+.||.|+|++|.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4789999999999987 8999999999999999999998
Q ss_pred cCc
Q psy2204 195 VGA 197 (231)
Q Consensus 195 ~~~ 197 (231)
+..
T Consensus 89 ~~~ 91 (96)
T 2dgx_A 89 GAS 91 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 254
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.06 E-value=1.1e-05 Score=57.98 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=36.8
Q ss_pred CCcEEEcCCCCC-CCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 157 PHKIFIGGLPNY-LNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 157 ~~~ifV~nLp~~-~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.++|||+|||++ ++++ +|+..|||..|.|+.|+|+++...
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 479999999999 9998 889999999999999999999754
No 255
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=1e-05 Score=57.07 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=38.6
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
...++|||+|||.++|++ +|++.|||..|.|+.|+|+++....
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 345899999999999998 8999999999999999999998653
No 256
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=1.1e-05 Score=55.92 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=37.6
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
...++|||+|||++++++ +|+. |||..|+|+.|+|.+|..
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 345899999999999998 8888 999999999999999986
Q ss_pred Cc
Q psy2204 196 GA 197 (231)
Q Consensus 196 ~~ 197 (231)
..
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 257
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.05 E-value=6.7e-06 Score=57.55 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=38.8
Q ss_pred CCCcEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 156 SPHKIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
..++|||+|||+.++++ +|+..|||..|.|+.|+|+++.+...
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 45799999999999998 89999999999999999999986644
No 258
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1.5e-05 Score=57.49 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=38.7
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||++++++ +|+..|||+.|.|+.|+|+++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 345899999999999998 8999999999999999999997
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5433
No 259
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.05 E-value=8.6e-06 Score=59.47 Aligned_cols=45 Identities=38% Similarity=0.539 Sum_probs=39.8
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
+..++|||+|||+++|++ +|++.|||..|.|+.|+|+++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 345899999999999998 8999999999999999999998
Q ss_pred cCccc
Q psy2204 195 VGAKN 199 (231)
Q Consensus 195 ~~~~~ 199 (231)
.....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 66443
No 260
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.05 E-value=7.2e-06 Score=57.92 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCCcEEEcCCCCCCCHH-------------------------------------------HHHHHhCCC----eeCCeEE
Q psy2204 156 SPHKIFIGGLPNYLNED-------------------------------------------QAIAGLNGM----QLGDKKL 188 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-------------------------------------------~Ai~~lnG~----~i~gr~l 188 (231)
.-++|||+|||+++|++ +|++.|||. .|+||.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 45799999999999999 899999997 5899999
Q ss_pred EEEEeec
Q psy2204 189 IVQRASV 195 (231)
Q Consensus 189 ~V~~a~~ 195 (231)
+|++|..
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999973
No 261
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=9.2e-06 Score=58.55 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=38.7
Q ss_pred CCCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 154 PDSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
....++|||+|||.++|++ +|+..|||..++|+.|+|++|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3456899999999999999 8999999999999999999998
Q ss_pred cC
Q psy2204 195 VG 196 (231)
Q Consensus 195 ~~ 196 (231)
.+
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 262
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=1e-05 Score=56.53 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=38.5
Q ss_pred CCCcEEEcCCCCCCCHH------------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 156 SPHKIFIGGLPNYLNED------------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee------------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
..++|||+|||++++++ +|+..|||..|.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35899999999999998 899999999999999999999
Q ss_pred ecCcc
Q psy2204 194 SVGAK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
.+...
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86644
No 263
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.04 E-value=5.4e-06 Score=57.52 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
..++|||+|||++++++ +|+..|||..+.|+.|+|+++...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 45899999999999998 899999999999999999999866
Q ss_pred cc
Q psy2204 197 AK 198 (231)
Q Consensus 197 ~~ 198 (231)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 264
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.04 E-value=4.7e-06 Score=58.17 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=37.3
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||+.++++ +|++.|||..+.|+.|+|++|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 345799999999999998 8999999999999999999987
Q ss_pred c
Q psy2204 195 V 195 (231)
Q Consensus 195 ~ 195 (231)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 265
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=1.2e-05 Score=57.05 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=39.5
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
...++|||+|||+++|++ +|+..|||..|.|+.|+|+++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 356899999999999999 89999999999999999999986
Q ss_pred Ccc
Q psy2204 196 GAK 198 (231)
Q Consensus 196 ~~~ 198 (231)
...
T Consensus 93 ~~~ 95 (103)
T 2d9p_A 93 KEE 95 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 644
No 266
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=1.1e-05 Score=56.65 Aligned_cols=43 Identities=30% Similarity=0.541 Sum_probs=38.6
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeC--CeEEEEEEeecCc
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLG--DKKLIVQRASVGA 197 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~--gr~l~V~~a~~~~ 197 (231)
...++|||+|||+++|++ +|+..|||..+. |+.|+|+++.+..
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 345899999999999998 899999999999 9999999998653
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.7e-06 Score=59.56 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=36.9
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
..++|||+|||.+++++ +|+..|||..++|+.|+|++|.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 45799999999999998 89999999999999999999874
No 268
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.01 E-value=7.1e-06 Score=59.72 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCcEEEcCCCCCCCHH--------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED--------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee--------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
...+|||+|||++++++ +||+.|||.+|.||.|+|+++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 45799999999999998 899999999999999999998744
No 269
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=1.1e-05 Score=56.72 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=39.0
Q ss_pred CCCcEEEcCCCCCCCHH--------------------------------------------HHHHHhCCCeeCCeEEEEE
Q psy2204 156 SPHKIFIGGLPNYLNED--------------------------------------------QAIAGLNGMQLGDKKLIVQ 191 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee--------------------------------------------~Ai~~lnG~~i~gr~l~V~ 191 (231)
..++|||+|||++++++ +|+..|||..|.|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45899999999999998 8999999999999999999
Q ss_pred EeecCccc
Q psy2204 192 RASVGAKN 199 (231)
Q Consensus 192 ~a~~~~~~ 199 (231)
++......
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99866443
No 270
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.01 E-value=1.1e-05 Score=55.73 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=37.2
Q ss_pred CCCcEEEcCCCCCCCHH----------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED----------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
..++|||+|||++++++ +|++.|||..+.|+.|+|+++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35799999999999987 899999999999999999999754
No 271
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.00 E-value=9.8e-06 Score=58.21 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCCcEEEcCCCCCCCHH----------------------------------HHHHHhCCCeeCC-----eEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED----------------------------------QAIAGLNGMQLGD-----KKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee----------------------------------~Ai~~lnG~~i~g-----r~l~V~~a~~~ 196 (231)
..++|||+|||+++|++ +||+.|||+.|.| +.|+|++|.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 45899999999999998 8999999999999 99999999865
Q ss_pred cc
Q psy2204 197 AK 198 (231)
Q Consensus 197 ~~ 198 (231)
..
T Consensus 94 ~~ 95 (108)
T 1x4c_A 94 SP 95 (108)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 272
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.00 E-value=3.4e-05 Score=57.69 Aligned_cols=46 Identities=37% Similarity=0.597 Sum_probs=40.4
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
....++|||+|||.+++++ +|+..|||..|.|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999998 89999999999999999999
Q ss_pred eecCccc
Q psy2204 193 ASVGAKN 199 (231)
Q Consensus 193 a~~~~~~ 199 (231)
|......
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9866443
No 273
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.00 E-value=2.3e-05 Score=57.00 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=35.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|++.|||..|+|+.|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 345799999999999998 899999999999999999987
Q ss_pred e
Q psy2204 194 S 194 (231)
Q Consensus 194 ~ 194 (231)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 274
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=1.1e-05 Score=56.88 Aligned_cols=42 Identities=33% Similarity=0.519 Sum_probs=37.5
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||.+++++ +|++ |||..|.|+.|+|+++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 45899999999999998 7887 99999999999999998
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
+...
T Consensus 88 ~~~~ 91 (99)
T 2dgs_A 88 PRDS 91 (99)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6644
No 275
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.00 E-value=9.6e-06 Score=57.60 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=38.0
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||++++++ +|+ .|||..|.|+.|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 345899999999999998 788 899999999999999998
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
+...
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6644
No 276
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=9.1e-06 Score=55.46 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=35.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHh-CCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGL-NGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~l-nG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||.+++++ +|+..| ||..+.|+.|+|+||.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345899999999999998 888888 9999999999999974
No 277
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.99 E-value=8.8e-06 Score=58.67 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=38.9
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
...++|||+|||+++|++ +|+..|||..+.|+.|+|+++....+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 345899999999999998 89999999999999999999986543
No 278
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=8.5e-06 Score=57.35 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=39.1
Q ss_pred CCCCcEEEcCCCCCCCHH------------------------------------------HHHHHhCCCeeCCeE----E
Q psy2204 155 DSPHKIFIGGLPNYLNED------------------------------------------QAIAGLNGMQLGDKK----L 188 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee------------------------------------------~Ai~~lnG~~i~gr~----l 188 (231)
...++|||+|||++++++ +|+..|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 345899999999999998 899999999999999 9
Q ss_pred EEEEeecCcc
Q psy2204 189 IVQRASVGAK 198 (231)
Q Consensus 189 ~V~~a~~~~~ 198 (231)
+|++|..+..
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999986643
No 279
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.97 E-value=1.1e-05 Score=58.04 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=38.0
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||..+|++ +|+..|||..|.|+.|+|+++.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 44789999999999998 8999999999999999999998
Q ss_pred cCc
Q psy2204 195 VGA 197 (231)
Q Consensus 195 ~~~ 197 (231)
+..
T Consensus 105 ~~~ 107 (110)
T 1oo0_B 105 VKG 107 (110)
T ss_dssp ESS
T ss_pred cCC
Confidence 653
No 280
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.97 E-value=9.5e-06 Score=57.37 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=37.6
Q ss_pred CCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 156 SPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
..++|||+|||+++|++ +|++ |||..|.|+.|+|+++..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 45799999999999998 8888 999999999999999986
Q ss_pred Ccc
Q psy2204 196 GAK 198 (231)
Q Consensus 196 ~~~ 198 (231)
...
T Consensus 95 ~~~ 97 (101)
T 1fj7_A 95 RDG 97 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 281
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.96 E-value=1.4e-05 Score=56.78 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=39.1
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCC---eEEEEE
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGD---KKLIVQ 191 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~g---r~l~V~ 191 (231)
...++|||+|||++++++ +|+..|||..+.| +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 346899999999999998 8999999999998 999999
Q ss_pred EeecCcc
Q psy2204 192 RASVGAK 198 (231)
Q Consensus 192 ~a~~~~~ 198 (231)
+|.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9986643
No 282
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=1.3e-05 Score=57.92 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||+++|++ +|+..|||..|.|+.|+|++|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45899999999999998 8999999999999999999998
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
....
T Consensus 104 ~~~~ 107 (115)
T 2cpx_A 104 NKKQ 107 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6643
No 283
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=8e-06 Score=58.86 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=39.1
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhC--CCeeCCeEEEEEEeecCc
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGLN--GMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~ln--G~~i~gr~l~V~~a~~~~ 197 (231)
...++|||+|||+++|++ +|++.|+ |..|.||.|+|++|....
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 345899999999999998 8888886 479999999999998664
Q ss_pred cccc
Q psy2204 198 KNAS 201 (231)
Q Consensus 198 ~~~~ 201 (231)
....
T Consensus 94 ~~~~ 97 (105)
T 1sjq_A 94 LKTD 97 (105)
T ss_dssp CCCT
T ss_pred CCcc
Confidence 4443
No 284
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.95 E-value=8.3e-06 Score=56.81 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=35.9
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...|||+||++.+|++ +|++.|||..+.||.|+|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4679999999999999 9999999999999999999996
No 285
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.94 E-value=1e-05 Score=58.26 Aligned_cols=43 Identities=26% Similarity=0.543 Sum_probs=38.5
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
...+++|||+|||+.++++ +|++.|||..|.|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3446899999999999998 88999999999999999999
Q ss_pred eecC
Q psy2204 193 ASVG 196 (231)
Q Consensus 193 a~~~ 196 (231)
+.+.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9854
No 286
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.94 E-value=2.4e-05 Score=56.08 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=39.2
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhC------CCeeCCeE
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLN------GMQLGDKK 187 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~ln------G~~i~gr~ 187 (231)
...++|||+|||+++|++ +|+..|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346899999999999998 8999999 99999999
Q ss_pred EEEEEeecCcc
Q psy2204 188 LIVQRASVGAK 198 (231)
Q Consensus 188 l~V~~a~~~~~ 198 (231)
|+|+++.+...
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999986533
No 287
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.93 E-value=1.2e-05 Score=57.40 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=36.8
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||+.+|++ +|+..|||..|.|+.|+|++|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 445899999999999998 8999999999999999999986
No 288
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=2.4e-05 Score=56.40 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=39.0
Q ss_pred CCCCcEEEcCCCCCCCHH-------------------------------------------------HHHHHhCCCeeCC
Q psy2204 155 DSPHKIFIGGLPNYLNED-------------------------------------------------QAIAGLNGMQLGD 185 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-------------------------------------------------~Ai~~lnG~~i~g 185 (231)
...++|||+|||+++|++ +|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 456899999999999987 8999999999999
Q ss_pred eEEEEEEeecCcc
Q psy2204 186 KKLIVQRASVGAK 198 (231)
Q Consensus 186 r~l~V~~a~~~~~ 198 (231)
+.|+|+++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999986644
No 289
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=1e-05 Score=57.68 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=37.5
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||.+++++ +|+..|||..|.|+.|+|++|.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 34789999999999998 8999999999999999999998
Q ss_pred cC
Q psy2204 195 VG 196 (231)
Q Consensus 195 ~~ 196 (231)
+.
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 65
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.92 E-value=1.8e-05 Score=55.35 Aligned_cols=42 Identities=26% Similarity=0.489 Sum_probs=37.9
Q ss_pred CCCcEEEcCCCCCCCHH------------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 156 SPHKIFIGGLPNYLNED------------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee------------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
..++|||+|||.+++++ +|+..|||..+.|+.|+|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999985 889999999999999999999
Q ss_pred ecCc
Q psy2204 194 SVGA 197 (231)
Q Consensus 194 ~~~~ 197 (231)
....
T Consensus 87 ~~~~ 90 (97)
T 1nu4_A 87 KTDS 90 (97)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8653
No 291
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.91 E-value=1.9e-05 Score=56.27 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=38.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCee---CCeEEEE
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQL---GDKKLIV 190 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i---~gr~l~V 190 (231)
...++|||+|||.++|++ +|+..|||..+ .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 345899999999999998 89999999998 8999999
Q ss_pred EEeecCcc
Q psy2204 191 QRASVGAK 198 (231)
Q Consensus 191 ~~a~~~~~ 198 (231)
+++.....
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99986644
No 292
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1.3e-05 Score=56.09 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=37.8
Q ss_pred CCCcEEEcCCCCCCCHH--------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED--------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee--------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
..++|||+|||++++++ +|+..|||..|.|+.|+|++|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 45899999999999998 889999999999999999999865
No 293
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=8.8e-06 Score=58.94 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=37.2
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.++|||+|||++++++ .|+..|||..|.|+.|+|+||...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4799999999999998 899999999999999999999854
No 294
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.88 E-value=1.2e-05 Score=58.18 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=38.7
Q ss_pred CCCCcEEEcCCCCCCCHH--------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 155 DSPHKIFIGGLPNYLNED--------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee--------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+..++|||+|||+.+|++ .|+..|||..+.|+.|+|.++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 345899999999999998 899999999999999999999865
Q ss_pred c
Q psy2204 197 A 197 (231)
Q Consensus 197 ~ 197 (231)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=8.1e-06 Score=57.33 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=38.5
Q ss_pred CCCcEEEcCCCC-CCCHH---------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 156 SPHKIFIGGLPN-YLNED---------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 156 ~~~~ifV~nLp~-~~tee---------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
..++|||+|||+ .++++ .|+..|||..+.|+.|+|+++.....
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 457999999998 99998 89999999999999999999986543
No 296
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.88 E-value=1.4e-05 Score=57.08 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=36.3
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCe--eCCeEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQ--LGDKKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~--i~gr~l~V~~a~~~ 196 (231)
..++|||+|||+++|++ .|+..|||.. +.||.|+|++++..
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 45789999999999998 8999999876 78999999999753
No 297
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.86 E-value=3e-05 Score=59.27 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=38.2
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||+.+|++ +||..|||..|.|+.|+|++|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345899999999999998 899999999999999999999
Q ss_pred ecC
Q psy2204 194 SVG 196 (231)
Q Consensus 194 ~~~ 196 (231)
...
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 298
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=4.3e-05 Score=54.35 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=39.1
Q ss_pred CCCCcEEEcCCCCCCCHH------------------------------------------HHHHHh-CCCeeCCeEEEEE
Q psy2204 155 DSPHKIFIGGLPNYLNED------------------------------------------QAIAGL-NGMQLGDKKLIVQ 191 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee------------------------------------------~Ai~~l-nG~~i~gr~l~V~ 191 (231)
...++|||+|||+.+|++ +|+..| ||..|.|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 345899999999999998 899999 9999999999999
Q ss_pred EeecCcc
Q psy2204 192 RASVGAK 198 (231)
Q Consensus 192 ~a~~~~~ 198 (231)
++.....
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9986543
No 299
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.85 E-value=1.8e-05 Score=54.37 Aligned_cols=39 Identities=10% Similarity=0.267 Sum_probs=35.4
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||++++++ +|+ .|||..+.|+.|+|+++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3789999999999998 788 9999999999999999975
Q ss_pred C
Q psy2204 196 G 196 (231)
Q Consensus 196 ~ 196 (231)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 300
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.85 E-value=1.8e-05 Score=58.16 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=38.9
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||+++|++ +|+..|||..|.|+.|+|++|.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 34799999999999998 8999999999999999999998
Q ss_pred cCccc
Q psy2204 195 VGAKN 199 (231)
Q Consensus 195 ~~~~~ 199 (231)
.....
T Consensus 101 ~~~~~ 105 (126)
T 3ex7_B 101 VRGPP 105 (126)
T ss_dssp ESSSC
T ss_pred CCCCC
Confidence 65443
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=1.9e-05 Score=58.81 Aligned_cols=42 Identities=7% Similarity=0.237 Sum_probs=37.6
Q ss_pred CCCcEEEcCCCCCCCHH------------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 156 SPHKIFIGGLPNYLNED------------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee------------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
..++|||+|||+.++++ .|+..|||..|.|+.|+|+||
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 35789999999999975 899999999999999999999
Q ss_pred ecCc
Q psy2204 194 SVGA 197 (231)
Q Consensus 194 ~~~~ 197 (231)
....
T Consensus 108 ~~~~ 111 (127)
T 2a3j_A 108 ETPQ 111 (127)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8553
No 302
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.85 E-value=9.1e-06 Score=60.58 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=38.8
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
.+..++|||+|||++++++ +|+..|||..|.|+.|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999 89999999999999999999
Q ss_pred eecC
Q psy2204 193 ASVG 196 (231)
Q Consensus 193 a~~~ 196 (231)
+...
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9865
No 303
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.84 E-value=2e-05 Score=55.68 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=36.9
Q ss_pred CcEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 158 HKIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 158 ~~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
++|||+|||.++|++ +|+..|||..+.|+.|+|+++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 479999999999998 89999999999999999999986643
No 304
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=1.4e-05 Score=56.25 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCc-EEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 157 PHK-IFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 157 ~~~-ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
..+ |||+|||+.++++ +|++.|||.++.||.|+|++|..+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 355 9999999999987 899999999999999999999865
No 305
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=5.2e-05 Score=54.06 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------HHHHHh--CCCeeCCeEEEEEEeecCcc
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------QAIAGL--NGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------~Ai~~l--nG~~i~gr~l~V~~a~~~~~ 198 (231)
..++|||+|||+++|++ +|+..| ++..+.||.|+|++|.....
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 45789999999999998 788876 57889999999999986544
Q ss_pred c
Q psy2204 199 N 199 (231)
Q Consensus 199 ~ 199 (231)
.
T Consensus 94 ~ 94 (101)
T 2cq1_A 94 K 94 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 306
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=2.3e-05 Score=56.14 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=36.2
Q ss_pred CCCCcEEEcCCCC-CCCHH-----------------------------------HHHHHhCCC--eeCCeEEEEEEeecC
Q psy2204 155 DSPHKIFIGGLPN-YLNED-----------------------------------QAIAGLNGM--QLGDKKLIVQRASVG 196 (231)
Q Consensus 155 ~~~~~ifV~nLp~-~~tee-----------------------------------~Ai~~lnG~--~i~gr~l~V~~a~~~ 196 (231)
+..++|||+|||+ ++|++ .|++.|||. .|.||.|+|.+|...
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3568999999999 99998 888988864 599999999999854
No 307
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=3.7e-05 Score=55.69 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=37.4
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
....++|||+|||+++|++ +|+..||+ .|.|+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3456899999999999998 89999998 89999999999
Q ss_pred eecC
Q psy2204 193 ASVG 196 (231)
Q Consensus 193 a~~~ 196 (231)
|...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9755
No 308
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=4.1e-05 Score=54.61 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeec
Q psy2204 45 QARRLYVGNIPFGV-TE----DEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFK 118 (231)
Q Consensus 45 ~~r~lfVgNLp~~~-te----~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~ 118 (231)
-.++|+|.||+.++ +. +.++++|..|+ ++......++-+=..|.|.+.++|.+|- .|++..+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~-----------~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYD-----------KDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTC-----------SSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhC-----------cCcceeecCcceEEEEEeCChHHHHHHHHHhccceec
Confidence 45699999998866 32 57789999998 7777777787667799999999999998 99999999
Q ss_pred CceEEEeCCC
Q psy2204 119 GQSLKIRRPH 128 (231)
Q Consensus 119 gr~i~V~~~~ 128 (231)
|+.++|.+..
T Consensus 73 g~~~r~YFgq 82 (104)
T 1wey_A 73 GKEMKLYFAQ 82 (104)
T ss_dssp TEECEEECCC
T ss_pred CceeEEEecC
Confidence 9999999887
No 309
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.82 E-value=2.5e-05 Score=58.31 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=35.6
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
....++|||+|||+.++++ +|++.|||..|.|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456899999999999998 89999999999999999998
Q ss_pred e
Q psy2204 193 A 193 (231)
Q Consensus 193 a 193 (231)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 310
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=1.2e-05 Score=56.96 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=37.6
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||+.++++ +|++.|||..+.|+.|+|++|..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4799999999999998 89999999999999999999986
Q ss_pred Cc
Q psy2204 196 GA 197 (231)
Q Consensus 196 ~~ 197 (231)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 311
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.82 E-value=6.1e-05 Score=55.26 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=38.1
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||+.++++ +|+..|||..+.|+.|+|++|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 445799999999999998 8999999999999999999998
Q ss_pred cC
Q psy2204 195 VG 196 (231)
Q Consensus 195 ~~ 196 (231)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 312
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.81 E-value=3.3e-05 Score=52.91 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=32.5
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|+ .++|..+.|+.|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 456899999999999999 666 55888899999999886
No 313
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=3.7e-05 Score=54.60 Aligned_cols=43 Identities=33% Similarity=0.567 Sum_probs=37.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|+ .|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 345899999999999998 788 99999999999999999
Q ss_pred ecCcc
Q psy2204 194 SVGAK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
.....
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86644
No 314
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.80 E-value=2.1e-05 Score=60.54 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=36.7
Q ss_pred CCCcEEEcCCCCCCCHH-------------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 156 SPHKIFIGGLPNYLNED-------------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-------------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
..++|||+|||+++|++ +||..|||..|.|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 45799999999999998 89999999999999999999
Q ss_pred eecC
Q psy2204 193 ASVG 196 (231)
Q Consensus 193 a~~~ 196 (231)
|.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 315
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.79 E-value=3.9e-05 Score=53.97 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=35.2
Q ss_pred CCCCCcEEEcCCCCCCCHH-------------------------------------------------HHHHHhCCCeeC
Q psy2204 154 PDSPHKIFIGGLPNYLNED-------------------------------------------------QAIAGLNGMQLG 184 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-------------------------------------------------~Ai~~lnG~~i~ 184 (231)
+...++|||+|||++++++ +|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3445899999999999998 788889999999
Q ss_pred CeEEEEEEee
Q psy2204 185 DKKLIVQRAS 194 (231)
Q Consensus 185 gr~l~V~~a~ 194 (231)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999998874
No 316
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=2.2e-05 Score=57.72 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||+++|++ +||. |||..|+||.|+|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999998 8888 9999999999999999
Q ss_pred ecC
Q psy2204 194 SVG 196 (231)
Q Consensus 194 ~~~ 196 (231)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 317
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=2.9e-05 Score=56.05 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.6
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
+|++.|||..|.|+.|+|++|.+...
T Consensus 78 ~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 78 RAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp HHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred HHHHHhCCCEECCEEEEEEecccccc
Confidence 89999999999999999999987643
No 318
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.77 E-value=8e-06 Score=56.64 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=31.9
Q ss_pred CcEEEcCCCCCCCHH-------------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 158 HKIFIGGLPNYLNED-------------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 158 ~~ifV~nLp~~~tee-------------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
.+|||+|||+++|++ +|++.|||..+.||.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 478999999999887 8999999999999999999998
Q ss_pred cCc
Q psy2204 195 VGA 197 (231)
Q Consensus 195 ~~~ 197 (231)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 319
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2.9e-05 Score=54.10 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=35.9
Q ss_pred CCCcEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
..++|||+|||+++|++ +|+. |||..|.|+.|+|+++...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 35799999999999998 7888 9999999999999988754
No 320
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=3.9e-05 Score=54.85 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=37.3
Q ss_pred CCCcEEEcCCCCCCCHH-------------------------------------------HHHHHhC--CCeeCCeEEEE
Q psy2204 156 SPHKIFIGGLPNYLNED-------------------------------------------QAIAGLN--GMQLGDKKLIV 190 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-------------------------------------------~Ai~~ln--G~~i~gr~l~V 190 (231)
..++|||+|||+++|++ +|+..|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 34789999999999998 8889996 59999999999
Q ss_pred EEeecCcc
Q psy2204 191 QRASVGAK 198 (231)
Q Consensus 191 ~~a~~~~~ 198 (231)
++|.+...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99986643
No 321
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.76 E-value=4.6e-05 Score=56.61 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=39.6
Q ss_pred CCCCcEEEcCCCCCCCHH------------------------------------------HHHHHhCCC----eeCCeEE
Q psy2204 155 DSPHKIFIGGLPNYLNED------------------------------------------QAIAGLNGM----QLGDKKL 188 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee------------------------------------------~Ai~~lnG~----~i~gr~l 188 (231)
...++|||+|||+++|++ +|+..|||. .+.||.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCCCEEE
Confidence 345899999999999998 799999999 9999999
Q ss_pred EEEEeecCccc
Q psy2204 189 IVQRASVGAKN 199 (231)
Q Consensus 189 ~V~~a~~~~~~ 199 (231)
+|++|.+....
T Consensus 101 ~V~~a~~~~~~ 111 (131)
T 2m2b_A 101 NVEFAKGSKRD 111 (131)
T ss_dssp CCEECCCSCCC
T ss_pred EEEECCCCCCC
Confidence 99999866443
No 322
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=2.9e-05 Score=55.02 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=38.8
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCe-eCCeEEEEEE
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQ-LGDKKLIVQR 192 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~-i~gr~l~V~~ 192 (231)
...++|||+|||+++|++ +|+..|||.. |.|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 345899999999999998 8999999999 9999999999
Q ss_pred eecCcc
Q psy2204 193 ASVGAK 198 (231)
Q Consensus 193 a~~~~~ 198 (231)
+.....
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 976543
No 323
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=3.3e-05 Score=54.90 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
....++|||+|||++++++ +|+.. ||+.|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3456899999999999998 78887 99999999999999
Q ss_pred eecCccc
Q psy2204 193 ASVGAKN 199 (231)
Q Consensus 193 a~~~~~~ 199 (231)
+.+....
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9866443
No 324
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=4.9e-05 Score=54.13 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 154 PDSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
....++|||+|||+++|++ +|| .+|+..|+||.|+|.+++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 3445899999999999998 777 579999999999999988
Q ss_pred cCcc
Q psy2204 195 VGAK 198 (231)
Q Consensus 195 ~~~~ 198 (231)
....
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6643
No 325
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=2e-05 Score=57.03 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||++++++ +|+ .|||+.|.|+.|+|+++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4799999999999998 888 9999999999999999975
Q ss_pred Cc
Q psy2204 196 GA 197 (231)
Q Consensus 196 ~~ 197 (231)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 326
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.72 E-value=4e-05 Score=56.39 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=37.4
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCC--CeeCCeEEEEEEeecCcc
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------QAIAGLNG--MQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG--~~i~gr~l~V~~a~~~~~ 198 (231)
..++|||+|||+++|++ +|++.||+ ..|.|+.|+|++|.....
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 45789999999999998 88888874 689999999999986544
Q ss_pred c
Q psy2204 199 N 199 (231)
Q Consensus 199 ~ 199 (231)
.
T Consensus 110 ~ 110 (119)
T 2ad9_A 110 K 110 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 327
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.72 E-value=4e-06 Score=57.34 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=34.5
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
..++|||+|||.+++++ +|++.|||..+.|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45899999999999998 8888899999999988887765
Q ss_pred c
Q psy2204 195 V 195 (231)
Q Consensus 195 ~ 195 (231)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.71 E-value=3.8e-05 Score=57.82 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=37.4
Q ss_pred CCCcEEEcCCCCCCCHH----------------------------------------------HHHHHhCCCeeCCeEEE
Q psy2204 156 SPHKIFIGGLPNYLNED----------------------------------------------QAIAGLNGMQLGDKKLI 189 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee----------------------------------------------~Ai~~lnG~~i~gr~l~ 189 (231)
..++|||+|||+++|++ +|+..|||..|.|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 35799999999999998 89999999999999999
Q ss_pred EEEeecC
Q psy2204 190 VQRASVG 196 (231)
Q Consensus 190 V~~a~~~ 196 (231)
|++|...
T Consensus 124 V~~a~~~ 130 (143)
T 3egn_A 124 VQFARSA 130 (143)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999754
No 329
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.70 E-value=9e-06 Score=57.67 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=22.2
Q ss_pred HHHHHhCCCeeCC-eEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGD-KKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~g-r~l~V~~a~~~ 196 (231)
+|+..|||+.|.| +.|+|++|.+.
T Consensus 69 ~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 69 KIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHhCCcccCCCeEEEEEECchh
Confidence 8999999999999 99999999754
No 330
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.68 E-value=4.3e-05 Score=54.50 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.9
Q ss_pred HHHHHhCCCeeCCe-EEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDK-KLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr-~l~V~~a~~~ 196 (231)
+|+..|||..|.|+ .|+|++|...
T Consensus 76 ~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 76 DAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHhCCcccCCCceEEEEEcchH
Confidence 89999999999999 9999999743
No 331
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.67 E-value=2.2e-05 Score=52.22 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.4
Q ss_pred cEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 159 KIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 159 ~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
+|||+|||++++++ +|++ |||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999988 6665 9999999999999876
No 332
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=7.3e-05 Score=53.89 Aligned_cols=42 Identities=21% Similarity=0.452 Sum_probs=36.9
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCee--------CCe
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQL--------GDK 186 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i--------~gr 186 (231)
...++|||+|||+++|++ +|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 356899999999999998 89999999999 578
Q ss_pred EEEEEEeecC
Q psy2204 187 KLIVQRASVG 196 (231)
Q Consensus 187 ~l~V~~a~~~ 196 (231)
.|+|++|.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999854
No 333
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.66 E-value=7.9e-05 Score=54.40 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCCCCcEEEcCCCCCCCHH-------------------------------------------HHHHHhCCCeeCCeEEEE
Q psy2204 154 PDSPHKIFIGGLPNYLNED-------------------------------------------QAIAGLNGMQLGDKKLIV 190 (231)
Q Consensus 154 ~~~~~~ifV~nLp~~~tee-------------------------------------------~Ai~~lnG~~i~gr~l~V 190 (231)
....++|||+|||+++|++ +|++ |||..|+||.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 3456899999999999998 7777 9999999999999
Q ss_pred EEeecC
Q psy2204 191 QRASVG 196 (231)
Q Consensus 191 ~~a~~~ 196 (231)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 334
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.65 E-value=4.7e-05 Score=55.76 Aligned_cols=39 Identities=8% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||+++|++ +|+ .|||..|.|+.|+|+++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4799999999999998 788 8999999999999999975
Q ss_pred C
Q psy2204 196 G 196 (231)
Q Consensus 196 ~ 196 (231)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 335
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=4.1e-05 Score=54.91 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=35.8
Q ss_pred CCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCC--eeCCeEEEEEEeecCc
Q psy2204 156 SPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGM--QLGDKKLIVQRASVGA 197 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~--~i~gr~l~V~~a~~~~ 197 (231)
..++|||+|||++++++ +|++.||+. .+.|+.|+|+++....
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 35799999999999998 888888764 5999999999998553
No 336
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.63 E-value=1.3e-05 Score=55.32 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=32.8
Q ss_pred CcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 158 HKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 158 ~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
++|||+|||.+++++ +|+..|||..+.|+.|+|++|....
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTHHHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 478888888888887 8899999999999999999998653
No 337
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.60 E-value=8.6e-05 Score=53.38 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=35.1
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||+++|++ +|+..+ |..+.|+.|+|+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 346899999999999998 777776 59999999999999
Q ss_pred ecCcc
Q psy2204 194 SVGAK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86643
No 338
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=4.8e-05 Score=55.37 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=35.4
Q ss_pred CCCCcEEEcCCCCC-CCHH-----------------------------------HHHHHhCC--CeeCCeEEEEEEeecC
Q psy2204 155 DSPHKIFIGGLPNY-LNED-----------------------------------QAIAGLNG--MQLGDKKLIVQRASVG 196 (231)
Q Consensus 155 ~~~~~ifV~nLp~~-~tee-----------------------------------~Ai~~lnG--~~i~gr~l~V~~a~~~ 196 (231)
...++|||+|||++ +|++ +|++.||+ ..|.||.|+|++|...
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 34689999999998 8887 88888864 5699999999999754
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.56 E-value=0.00022 Score=49.80 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=35.9
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeecCcc
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASVGAK 198 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~~ 198 (231)
...++|||+|| ++|++ +|+..|||..|.|+.|+|+++.....
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 34579999996 77887 89999999999999999999986543
No 340
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.55 E-value=2.8e-05 Score=54.94 Aligned_cols=41 Identities=32% Similarity=0.588 Sum_probs=34.1
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|+ .|||..|.|+.|+|+++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 446899999999998876 788 89999999999999998
Q ss_pred ecC
Q psy2204 194 SVG 196 (231)
Q Consensus 194 ~~~ 196 (231)
..+
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 754
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.55 E-value=0.0001 Score=55.04 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=35.9
Q ss_pred CcEEEcCCCCCCCHH-------------------------------------HHHHHhCCCeeCC--eEEEEEEeecC
Q psy2204 158 HKIFIGGLPNYLNED-------------------------------------QAIAGLNGMQLGD--KKLIVQRASVG 196 (231)
Q Consensus 158 ~~ifV~nLp~~~tee-------------------------------------~Ai~~lnG~~i~g--r~l~V~~a~~~ 196 (231)
-+|||+||++.+|++ +|++.|||+.|.| +.|+|++|+..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 368899999999999 9999999999998 99999999865
No 342
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=4.9e-05 Score=50.63 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.7
Q ss_pred HHHHHhCCCeeCCeEEEEEEe
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a 193 (231)
+|++.+| ..+.|+.|+|++|
T Consensus 57 ~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 57 KVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHhCC-CccCCEEEEEEec
Confidence 7888888 8888888888876
No 343
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.53 E-value=0.00015 Score=51.54 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=36.4
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||+++|++ +|+.. ||..|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 345899999999999998 77777 999999999999998
Q ss_pred ecCc
Q psy2204 194 SVGA 197 (231)
Q Consensus 194 ~~~~ 197 (231)
+...
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7553
No 344
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=9.7e-05 Score=53.43 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=36.3
Q ss_pred CCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||+++|++ +|+.. ||..|.|+.|+|+++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4799999999999998 77777 99999999999999986
Q ss_pred Ccc
Q psy2204 196 GAK 198 (231)
Q Consensus 196 ~~~ 198 (231)
...
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 644
No 345
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=0.00013 Score=52.76 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=36.5
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||+++|++ +||.. ||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 445899999999999998 67666 999999999999999
Q ss_pred ecCc
Q psy2204 194 SVGA 197 (231)
Q Consensus 194 ~~~~ 197 (231)
....
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8654
No 346
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=7.3e-05 Score=53.39 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=34.1
Q ss_pred CCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 157 PHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
.++|||+|||+++|++ .|+. +||..+.|+.|+|.++..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4799999999999998 7777 899999999999998764
No 347
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.44 E-value=6e-05 Score=53.92 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCCCcEEEcCCCCCCCHH-------------------------------------------HHHHHhCCCeeCCeEEEEE
Q psy2204 155 DSPHKIFIGGLPNYLNED-------------------------------------------QAIAGLNGMQLGDKKLIVQ 191 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-------------------------------------------~Ai~~lnG~~i~gr~l~V~ 191 (231)
...++|||+|||+++|++ +|+. |||..++||.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 345899999999999988 7777 99999999999999
Q ss_pred EeecC
Q psy2204 192 RASVG 196 (231)
Q Consensus 192 ~a~~~ 196 (231)
++...
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98754
No 348
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=0.00016 Score=52.22 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=34.2
Q ss_pred CcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 158 HKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 158 ~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.+|||+|||+++|++ +|+ .|||..|+||.|+|..++..
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 689999999999998 777 79999999999999988643
No 349
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=0.00039 Score=48.98 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=35.2
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
...++|||+|||++++++ +|+. +++.|.|+.|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 345899999999999998 6666 578999999999999
Q ss_pred ecCcc
Q psy2204 194 SVGAK 198 (231)
Q Consensus 194 ~~~~~ 198 (231)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 86643
No 350
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.42 E-value=0.00012 Score=56.74 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=35.6
Q ss_pred CcEEEcCCCCCCCHH-------------------------------------HHHHHhCCCeeCC--eEEEEEEeecC
Q psy2204 158 HKIFIGGLPNYLNED-------------------------------------QAIAGLNGMQLGD--KKLIVQRASVG 196 (231)
Q Consensus 158 ~~ifV~nLp~~~tee-------------------------------------~Ai~~lnG~~i~g--r~l~V~~a~~~ 196 (231)
.+|||+||++.+|++ +|++.|||..|.| +.|+|+||...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 478999999999998 8999999999965 99999999865
No 351
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.41 E-value=0.00014 Score=54.73 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCCCcEEEcCCCCCCCHH-------------------------------------------HHHHHhCCCeeCCeEEEEE
Q psy2204 155 DSPHKIFIGGLPNYLNED-------------------------------------------QAIAGLNGMQLGDKKLIVQ 191 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-------------------------------------------~Ai~~lnG~~i~gr~l~V~ 191 (231)
...++|||+|||+++|++ +|++ |||..|+||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 345899999999999998 7888 99999999999999
Q ss_pred EeecC
Q psy2204 192 RASVG 196 (231)
Q Consensus 192 ~a~~~ 196 (231)
+++..
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98754
No 352
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.39 E-value=0.00015 Score=56.97 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=38.0
Q ss_pred CCCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEee
Q psy2204 155 DSPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
...++|||+|||+.++++ +|+..|||..|.|+.|+|++|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 345799999999999998 8999999999999999999997
Q ss_pred cC
Q psy2204 195 VG 196 (231)
Q Consensus 195 ~~ 196 (231)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 353
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.37 E-value=0.0001 Score=60.32 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCCcEEEcCCCCCCCHH-------------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 156 SPHKIFIGGLPNYLNED-------------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee-------------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
..++|||+|||+++|++ +||+.|||+.|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 45789999999999998 89999999999999999999
Q ss_pred eec
Q psy2204 193 ASV 195 (231)
Q Consensus 193 a~~ 195 (231)
|..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 354
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.45 E-value=3e-05 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.4
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
+|+..|||..|.|+.|+|++|.+..
T Consensus 72 ~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 72 AAIDWFDGKEFSGNPIKVSFATRRA 96 (116)
Confidence 7888999999999999999998653
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.33 E-value=9.5e-05 Score=53.67 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=33.9
Q ss_pred CCCcEEEcCCCCCCCHH----------------------------------HHHHHhCCCeeCCeE-----EEEEEeecC
Q psy2204 156 SPHKIFIGGLPNYLNED----------------------------------QAIAGLNGMQLGDKK-----LIVQRASVG 196 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee----------------------------------~Ai~~lnG~~i~gr~-----l~V~~a~~~ 196 (231)
..++|||+|||+++|++ +||+.|||.+|.|+. |+|..+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 45899999999999988 899999999999998 777777654
No 356
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.30 E-value=0.00015 Score=48.02 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=28.1
Q ss_pred cEEEcCCCCCCCHH-----------------------------------------HHHHHhCCCeeCCeEEEEEEe
Q psy2204 159 KIFIGGLPNYLNED-----------------------------------------QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 159 ~ifV~nLp~~~tee-----------------------------------------~Ai~~lnG~~i~gr~l~V~~a 193 (231)
+|||+|||++++++ +|++ ++|..+.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 68999999999998 5665 4888888888888875
No 357
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.27 E-value=6e-05 Score=50.98 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.9
Q ss_pred HHHHHhCCCeeCCe-EEEE
Q psy2204 173 QAIAGLNGMQLGDK-KLIV 190 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr-~l~V 190 (231)
+|+..|||..+.|+ .|+|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 78888888888888 7776
No 358
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.27 E-value=0.00018 Score=48.94 Aligned_cols=16 Identities=19% Similarity=0.719 Sum_probs=14.4
Q ss_pred CCcEEEcCCCCCCCHH
Q psy2204 157 PHKIFIGGLPNYLNED 172 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee 172 (231)
.++|||+|||++++++
T Consensus 6 ~~~l~V~nLp~~~t~~ 21 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEE 21 (87)
T ss_dssp GGEEEEESCCTTCCHH
T ss_pred CCEEEEeCCCCCCCHH
Confidence 4789999999999988
No 359
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.001 Score=48.64 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=57.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecC-ceE
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKG-QSL 122 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~g-r~i 122 (231)
...+-|-|=+.|+.. ...+...|++|| .|++.......++-.|.|.+..+|++||..||..+.| -.|
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G-----------~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mI 89 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYG-----------NILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMI 89 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTS-----------CEEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhC-----------cEEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEE
Confidence 345678888888875 567888899999 7887777666899999999999999999999999986 445
Q ss_pred EEeC
Q psy2204 123 KIRR 126 (231)
Q Consensus 123 ~V~~ 126 (231)
-|..
T Consensus 90 GV~p 93 (119)
T 1wwh_A 90 GVKP 93 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 360
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.25 E-value=0.00047 Score=47.58 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=32.6
Q ss_pred CCCCcEEEcCCCCCCCHH--------------------------------HHHHHhCCCeeC--CeEEEEEEeecCc
Q psy2204 155 DSPHKIFIGGLPNYLNED--------------------------------QAIAGLNGMQLG--DKKLIVQRASVGA 197 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee--------------------------------~Ai~~lnG~~i~--gr~l~V~~a~~~~ 197 (231)
...++|||+|||+++|++ +....|+|..+. |+.|+|++|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCC
Confidence 346899999999999999 444578988754 9999999998653
No 361
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.25 E-value=0.00011 Score=55.40 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCCCcEEEcCCCCCCCHH---------------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 155 DSPHKIFIGGLPNYLNED---------------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee---------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
...++|||+|||+++|++ +|| .+|+..|.||.|+|.+++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 345799999999999998 777 7899999999999999886
Q ss_pred Ccc
Q psy2204 196 GAK 198 (231)
Q Consensus 196 ~~~ 198 (231)
...
T Consensus 123 ~~~ 125 (139)
T 2hgn_A 123 TGA 125 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00077 Score=46.02 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=34.9
Q ss_pred CCCcEEEcCCCCCCCHH--------------------------------HHHHHhCCCee--CCeEEEEEEeecCcc
Q psy2204 156 SPHKIFIGGLPNYLNED--------------------------------QAIAGLNGMQL--GDKKLIVQRASVGAK 198 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee--------------------------------~Ai~~lnG~~i--~gr~l~V~~a~~~~~ 198 (231)
..++|||+|||+++|++ +..+.+++..+ .|+.|+|.++.+...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCC
Confidence 35899999999999998 44467888765 899999999986644
No 363
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.22 E-value=0.00031 Score=51.99 Aligned_cols=39 Identities=23% Similarity=0.147 Sum_probs=34.9
Q ss_pred cEEEcCCCCCCCHH------------------------------------HHHHHhCCCeeCC--eEEEEEEeecCc
Q psy2204 159 KIFIGGLPNYLNED------------------------------------QAIAGLNGMQLGD--KKLIVQRASVGA 197 (231)
Q Consensus 159 ~ifV~nLp~~~tee------------------------------------~Ai~~lnG~~i~g--r~l~V~~a~~~~ 197 (231)
.|||+||++.+|++ .|++.|||..|.| +.|+|.+|.+..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 46899999999998 8999999999987 699999998663
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.05 E-value=0.00076 Score=49.39 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=35.2
Q ss_pred CCCCcEEEcCCCCCCCHH-----------------------------------HHHHHhCCCeeCCeEEEEEEeecCc
Q psy2204 155 DSPHKIFIGGLPNYLNED-----------------------------------QAIAGLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee-----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~~ 197 (231)
...++|||+|+ ++|++ +|+..|||..+.|+.|+|+++....
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 34589999996 57777 8999999999999999999998653
No 365
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.00073 Score=49.21 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=35.6
Q ss_pred CCCcEEE--cCCCCCCCHH-----------------------------------HHHHHhCCCee-----CCeEEEEEEe
Q psy2204 156 SPHKIFI--GGLPNYLNED-----------------------------------QAIAGLNGMQL-----GDKKLIVQRA 193 (231)
Q Consensus 156 ~~~~ifV--~nLp~~~tee-----------------------------------~Ai~~lnG~~i-----~gr~l~V~~a 193 (231)
..++||| +||++++|++ +|++.|||.++ .|+.|.|.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 4578999 7799999998 89999999999 7899999998
Q ss_pred ec
Q psy2204 194 SV 195 (231)
Q Consensus 194 ~~ 195 (231)
..
T Consensus 104 ~~ 105 (114)
T 2cq2_A 104 EK 105 (114)
T ss_dssp SC
T ss_pred cc
Confidence 63
No 366
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.99 E-value=0.00066 Score=47.68 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=33.5
Q ss_pred CCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 157 PHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 157 ~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
.++|||+|||++++++ +|+. ||..++|+.|.|.++...
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 4799999999999998 6666 899999999999999755
No 367
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.86 E-value=0.00073 Score=49.79 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=33.8
Q ss_pred CCCCcEEEcCCCCCCCHH--------------------------------------------HHHHHhCCCeeCCeEEEE
Q psy2204 155 DSPHKIFIGGLPNYLNED--------------------------------------------QAIAGLNGMQLGDKKLIV 190 (231)
Q Consensus 155 ~~~~~ifV~nLp~~~tee--------------------------------------------~Ai~~lnG~~i~gr~l~V 190 (231)
....+|||+|||+++|++ +|++. ||..|+||.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 345799999999999998 66665 888888999988
Q ss_pred EEeecC
Q psy2204 191 QRASVG 196 (231)
Q Consensus 191 ~~a~~~ 196 (231)
..++..
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888644
No 368
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.85 E-value=0.0016 Score=45.45 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC--------CcEEEEEecCHHHHHHHH-HhCCCee
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD--------KNFAFLEFRSIDETTQAM-AFDGINF 117 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~--------kg~aFV~F~~~~~a~~Al-~lng~~l 117 (231)
.+|-|++||+.+||+++.+.++... .+........ -.-|||.|.+.+++..-. .++|..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~-----------~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP-----------EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC-----------CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc-----------cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4788999999999999999888765 2222222111 267999999999999999 9999988
Q ss_pred cCc
Q psy2204 118 KGQ 120 (231)
Q Consensus 118 ~gr 120 (231)
.+.
T Consensus 71 ~D~ 73 (91)
T 1uw4_A 71 LDN 73 (91)
T ss_dssp ECT
T ss_pred EcC
Confidence 653
No 369
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.81 E-value=0.0008 Score=49.83 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=15.4
Q ss_pred CCCcEEEcCCCCCCCHH
Q psy2204 156 SPHKIFIGGLPNYLNED 172 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee 172 (231)
..++|||+|||+++|++
T Consensus 41 ~~~~lfVgnLp~~~te~ 57 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKE 57 (126)
T ss_dssp SCCEEEEECCCTTCCHH
T ss_pred CCCEEEEeCCCCCCCHH
Confidence 45789999999999999
No 370
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.79 E-value=0.00062 Score=56.06 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=35.2
Q ss_pred CCCcEEEcCCCCCC---------CHH-----------------------------------HHHHHhCCCee--------
Q psy2204 156 SPHKIFIGGLPNYL---------NED-----------------------------------QAIAGLNGMQL-------- 183 (231)
Q Consensus 156 ~~~~ifV~nLp~~~---------tee-----------------------------------~Ai~~lnG~~i-------- 183 (231)
..++|||+||+..+ +++ .|++.|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~ 212 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEW 212 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTG
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccc
Confidence 46899999999998 455 89999999999
Q ss_pred ----CCeEEEEEEeecC
Q psy2204 184 ----GDKKLIVQRASVG 196 (231)
Q Consensus 184 ----~gr~l~V~~a~~~ 196 (231)
.|+.|+|+||...
T Consensus 213 ~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 213 DDRREGTGLLVKWANED 229 (240)
T ss_dssp GGGGGSCCCEEEECC--
T ss_pred cccCCCCEEEEEEccCC
Confidence 8999999999854
No 371
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.73 E-value=0.00067 Score=60.94 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCc-EEEEEecCHHHHHHHHHh
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-FAFLEFRSIDETTQAMAF 112 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg-~aFV~F~~~~~a~~Al~l 112 (231)
|+|||. .+..+++.+|.++|++|| +|.++...+++| |+.|||.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g-----------~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFG-----------PINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGS-----------CCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcC-----------CcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 899997 799999999999999999 788877777765 999999999999988733
No 372
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.64 E-value=0.005 Score=48.69 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=50.1
Q ss_pred CHHHHHHHH-Hh--CCCeecCceEEEeCCCCCCCCCCCCCCCcccCCCCcccCcCCCCCCcEEEcCCCCCCCHH------
Q psy2204 102 SIDETTQAM-AF--DGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNED------ 172 (231)
Q Consensus 102 ~~~~a~~Al-~l--ng~~l~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~tee------ 172 (231)
+.+.+..|+ .. ....+.+...+|++.. ..+.+.... ........++|||+|||+++|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~-~~p~p~~~~-----------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F 130 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSP-SKPLPEVTD-----------EYKNDVKNRSVYIKGFPTDATLDDIKEWL 130 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECT-TSCCCCCCH-----------HHHHHHHHTEEEEECCCTTCCHHHHHHHH
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecc-cCCCcccch-----------hhhhccccCEEEecCCCCcCCHHHHHHHH
Confidence 567777777 55 4556666656666442 111111000 00001124799999999999998
Q ss_pred ----------------------------------HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 173 ----------------------------------QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 173 ----------------------------------~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
+|+..+ +..+.|+.|+|.++..
T Consensus 131 ~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 131 EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred hcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 677655 4599999999998763
No 373
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0036 Score=46.62 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=20.9
Q ss_pred HHHH--HhCCCeeCCeEEEEEEeecCc
Q psy2204 173 QAIA--GLNGMQLGDKKLIVQRASVGA 197 (231)
Q Consensus 173 ~Ai~--~lnG~~i~gr~l~V~~a~~~~ 197 (231)
+|+. .|||..|+||.|+|....-+.
T Consensus 71 kAi~~~~lng~~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 71 SAVRKHESSGCFIMGFKFEVILNKHSI 97 (136)
T ss_dssp HHHHHTTTTCEEETTEEEEEEECCTTH
T ss_pred HHHHHhhhcCCeecCcEEEEEECcccH
Confidence 6667 789999999999999876553
No 374
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.03 E-value=0.021 Score=40.01 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
.||+-+.|.++...||.++|+.||.+ .|.=++ --.|||.|.+.+.|..|+ .++
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv---------~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNI---------QISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSC---------CCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCE---------EEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 45444999999999999999999821 232222 368999999999999999 553
No 375
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.87 E-value=0.012 Score=41.85 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.8
Q ss_pred HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
+|+..|||+.+.||.|+|.++..
T Consensus 71 ~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 71 KAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHCCCEECCcEEEEEEcCH
Confidence 99999999999999999999974
No 376
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.85 E-value=0.0068 Score=42.59 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=47.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCC--------CcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD--------KNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 45 ~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~--------kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
.+-+|-|+.||+.+||+++.+.++..- .+........ -.-|||.|.+.+++..-. .++|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~-----------~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLP-----------AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCS-----------SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcC-----------ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 456899999999999999877766432 1111111111 256899999999999999 99999
Q ss_pred eecCc
Q psy2204 116 NFKGQ 120 (231)
Q Consensus 116 ~l~gr 120 (231)
.|.+.
T Consensus 77 ~F~D~ 81 (97)
T 2l08_A 77 IFLDS 81 (97)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 88653
No 377
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.63 E-value=0.017 Score=42.73 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=51.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCC-CC------eeeeEec--CCCcEEEEEecCHHHHHHHHHhCCCee
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAG-NP------VLACQIN--LDKNFAFLEFRSIDETTQAMAFDGINF 117 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~-~~------i~~~~~~--~~kg~aFV~F~~~~~a~~Al~lng~~l 117 (231)
..|.|=+.|.+. ...+.+.|++||.|.+-..... .. ....+.. ...++-.|+|.+..+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 345566666554 4567788999996654210000 00 0000111 125788999999999999999999999
Q ss_pred cCceEEEeCC
Q psy2204 118 KGQSLKIRRP 127 (231)
Q Consensus 118 ~gr~i~V~~~ 127 (231)
.|..|-|...
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 9987777643
No 378
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.41 E-value=0.029 Score=39.91 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|+..|||+.|.||.|+|+++.+.
T Consensus 79 ~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 79 YCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHcCCCEECCcEEEEEEeCCC
Confidence 899999999999999999999864
No 379
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.32 E-value=0.022 Score=40.70 Aligned_cols=17 Identities=47% Similarity=1.023 Sum_probs=15.3
Q ss_pred CCCcEEEcCCCCCCCHH
Q psy2204 156 SPHKIFIGGLPNYLNED 172 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee 172 (231)
..++|||+|||+++|++
T Consensus 7 ~~~~lfVgnLp~~~te~ 23 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDED 23 (114)
T ss_dssp CCCCEEEECCCTTCCHH
T ss_pred CCCEEEEcCCCCCCCHH
Confidence 35899999999999998
No 380
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.16 E-value=0.014 Score=41.04 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhC
Q psy2204 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFD 113 (231)
Q Consensus 49 lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~ln 113 (231)
||+-+.|.++...||.++|+.|| .| .++..- -..|||.|.+.+.|..|+ .++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fg-----------gv-~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFG-----------NI-QISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSE-----------EE-EEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccC-----------CE-EEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999998 12 222221 368999999999999999 554
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.2 Score=35.93 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=32.5
Q ss_pred CCCcEEEcCCCCCCCHH----------------------------------------HHHHHhCCCeeCCeEEEEEE
Q psy2204 156 SPHKIFIGGLPNYLNED----------------------------------------QAIAGLNGMQLGDKKLIVQR 192 (231)
Q Consensus 156 ~~~~ifV~nLp~~~tee----------------------------------------~Ai~~lnG~~i~gr~l~V~~ 192 (231)
..++|-+-|||..+++. +|...|||.+|.||+|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 45788888999999988 88889999999999999863
No 382
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.50 E-value=0.075 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+||+ |||.++.||.|+|+.+++.
T Consensus 64 aAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 64 NVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHh-cCCeEeCCeEEEEEeCCCC
Confidence 6777 9999999999999999865
No 383
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=92.36 E-value=0.14 Score=44.11 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=32.5
Q ss_pred CCCCcEEEcC--CCCCCCHH-----------------------------------HHHHHhCCCeeC---Ce--EEEEEE
Q psy2204 155 DSPHKIFIGG--LPNYLNED-----------------------------------QAIAGLNGMQLG---DK--KLIVQR 192 (231)
Q Consensus 155 ~~~~~ifV~n--Lp~~~tee-----------------------------------~Ai~~lnG~~i~---gr--~l~V~~ 192 (231)
...++|||+| |++.+|++ +||+.|||.++. |+ .|.|.+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEE
Confidence 3457999999 68899998 999999999983 45 577887
Q ss_pred ee
Q psy2204 193 AS 194 (231)
Q Consensus 193 a~ 194 (231)
+.
T Consensus 96 ~~ 97 (345)
T 3tht_A 96 VE 97 (345)
T ss_dssp CS
T ss_pred ee
Confidence 74
No 384
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=91.11 E-value=0.16 Score=35.80 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=26.7
Q ss_pred CcEEEcCCCCCCCHH--HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 158 HKIFIGGLPNYLNED--QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 158 ~~ifV~nLp~~~tee--~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
-.+||.- ...++ +|+..|||+.++||.|+|.++..
T Consensus 60 G~~fV~f---~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 60 GKIFVEF---TSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp TEEEEEE---SSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred EEEEEEE---CCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4577752 21222 99999999999999999999864
No 385
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=90.83 E-value=0.17 Score=36.32 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.5
Q ss_pred HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
+|+..|||+.++||.|+|.++..
T Consensus 70 ~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 70 AAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHhCCCEECCEEEEEEEEcH
Confidence 99999999999999999999863
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.36 E-value=0.16 Score=35.31 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=20.4
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+||+ |||.++.||.|+|++.+++
T Consensus 73 ~AI~-ldG~~v~Gr~L~V~~k~~~ 95 (95)
T 1ufw_A 73 SVLD-VDGMKVKGRAVKISGPSSG 95 (95)
T ss_dssp HHHH-GGGSEETTEEEEEECCCCC
T ss_pred HHHh-cCCeeeCCeEEEEeccCCC
Confidence 7887 9999999999999987753
No 387
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=89.90 E-value=0.17 Score=35.50 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=20.0
Q ss_pred HHHHHhCCCeeCCeEEEEEEe
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRA 193 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a 193 (231)
+|+..|||+.+.||.|+|.++
T Consensus 83 ~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 83 KAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHCCCEECCEEEEEEEc
Confidence 999999999999999999986
No 388
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=89.54 E-value=0.25 Score=35.62 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.5
Q ss_pred HHHHHhCCCeeCCeEEEEEEeec
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASV 195 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~ 195 (231)
+|+..|||+.++||.|+|.++..
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHCCCEECCcEEEEEEcCh
Confidence 99999999999999999999863
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.16 E-value=1.4 Score=31.10 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.9
Q ss_pred HHHHHhCCCeeCCeEEEEEEeecC
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRASVG 196 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~~~ 196 (231)
+|...|++..+.|++|+|-++.+-
T Consensus 61 ~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 61 DARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp HHHHTSTTSEETTEECEEECCCCS
T ss_pred HHHHHhccceecCceeEEEecCCC
Confidence 888999999999999999999843
No 390
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.59 E-value=3.2 Score=37.47 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCC
Q psy2204 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDG 114 (231)
Q Consensus 47 r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng 114 (231)
..++|+ ++..+...+|.++|+.|| .+ +++. -+...|||.|.+.++|..++ .++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg-----------~v-~V~w-iddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFG-----------NI-QISW-IDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGC-----------CC-EEEE-CSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcC-----------CE-EEEE-EcCCeEEEEECCHHHHHHHHHHHHh
Confidence 456676 888999999999999998 22 3332 23578999999999999999 7753
No 391
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=72.90 E-value=1.6 Score=34.33 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=21.0
Q ss_pred HHHHHhCCCeeCCeEEEEEEee
Q psy2204 173 QAIAGLNGMQLGDKKLIVQRAS 194 (231)
Q Consensus 173 ~Ai~~lnG~~i~gr~l~V~~a~ 194 (231)
+|+..|||+.++||.|+|.++.
T Consensus 190 ~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 190 KAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHhcCceECCeEEEEEEcC
Confidence 9999999999999999999975
No 392
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.61 E-value=9.1 Score=27.54 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=13.7
Q ss_pred CCCcEEEcCCCCC-CCHH
Q psy2204 156 SPHKIFIGGLPNY-LNED 172 (231)
Q Consensus 156 ~~~~ifV~nLp~~-~tee 172 (231)
....|||+||+++ ++++
T Consensus 17 ~G~il~v~~l~~~~~sre 34 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCRE 34 (121)
T ss_dssp CCCEEEEEESCCSSCCHH
T ss_pred CCeEEEEecCCCCcCCHH
Confidence 3467899999998 8887
No 393
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=57.99 E-value=20 Score=22.93 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=42.1
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-HhCCCeecCceEEE
Q psy2204 48 RLYVGNIP--FGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKI 124 (231)
Q Consensus 48 ~lfVgNLp--~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~lng~~l~gr~i~V 124 (231)
++||. +. ..+..-+|..++..-+.+..- .|=.+++. ..|.||+-... .+..++ .|++..+.|+.+.|
T Consensus 2 ~~~i~-~Grk~~~~p~~ivg~i~~~~gi~~~------~IG~I~i~--d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFN-GGKKKKIRAVDFVGTIAKIDGVSAD------DIGIITIM--DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKV 71 (76)
T ss_dssp EEEES-CCCC----CHHHHHHHHTSTTCCGG------GEEEEEEC--SSCEEEEECTT-CHHHHHHHHTTCCC---CCCE
T ss_pred EEEEe-CCCccCCCHHHHHHHHHHccCCChh------hccEEEEe--CCcEEEEECHH-HHHHHHHHhccccCcCceEEE
Confidence 45653 22 255667888888766533322 56666664 36888887654 466777 89999999999888
Q ss_pred eCC
Q psy2204 125 RRP 127 (231)
Q Consensus 125 ~~~ 127 (231)
+..
T Consensus 72 ~~~ 74 (76)
T 2g0c_A 72 NKA 74 (76)
T ss_dssp EEC
T ss_pred EEC
Confidence 754
No 394
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.73 E-value=1.1e+02 Score=26.10 Aligned_cols=58 Identities=14% Similarity=0.321 Sum_probs=41.8
Q ss_pred EEcCCCCCC----CHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCce
Q psy2204 50 YVGNIPFGV----TEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQS 121 (231)
Q Consensus 50 fVgNLp~~~----te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr~ 121 (231)
+||||..-. -...+.++..+|| +|..++++ +.-+|...+.+.++.++.-++..+.+|.
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG-----------~i~~~~~g---~~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYG-----------PIYSVRMG---TKTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHC-----------SEEEEEET---TEEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcC-----------CEEEEEeC---CCCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 688876432 1356788888999 88888885 4557778899999999855656666554
No 395
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=22.45 E-value=51 Score=16.56 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHh
Q psy2204 59 TEDEMMEFFNQQ 70 (231)
Q Consensus 59 te~~L~~~F~~~ 70 (231)
.+.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999999887
No 396
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.68 E-value=82 Score=26.77 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=36.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHHHhCCCeecCc
Q psy2204 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ 120 (231)
Q Consensus 48 ~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al~lng~~l~gr 120 (231)
-..|+|||++++..-|..++..+.....+ .+......+-+-..|-|++.++--|....|+
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~~~~~~~l-------------~~~~~~~m~lmvQkEvA~Rl~A~PGsk~yg~ 203 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSCIGNKNWL-------------YRFGKVKMLLWMPSTTARKLLARPGMHSRSK 203 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHTCGG-------------GGGSEEEEEEEEEHHHHHHHHCCTTSTTCCH
T ss_pred eEEEEECCCchHHHHHHHHHHhccccccc-------------cccCcceEEEEeEHHHHHHhcCCCCCccccH
Confidence 47899999999999999988864311000 0001122344456677787775556555553
No 397
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.42 E-value=1.3e+02 Score=20.77 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=25.9
Q ss_pred CeeeeEecCC-CcEEEEEecCHHHHHHHH-HhCCC
Q psy2204 83 PVLACQINLD-KNFAFLEFRSIDETTQAM-AFDGI 115 (231)
Q Consensus 83 ~i~~~~~~~~-kg~aFV~F~~~~~a~~Al-~lng~ 115 (231)
.|.++-...+ |||-|||=.+..++..|+ .+...
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 5777665444 999999999999999999 65543
No 398
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.38 E-value=2e+02 Score=19.48 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=40.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHhhhhhhccccCCCCeeeeEecCCCcEEEEEecCHHHHHHHH-Hh
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AF 112 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~G~~~~~~~~~~~~i~~~~~~~~kg~aFV~F~~~~~a~~Al-~l 112 (231)
+...-+-|-|+|..+-..++.-.....| .......+ .|.|.+.|.+.++..-|+ .|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlg----------yefycdyi---dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLG----------YEFYCDYI---DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTC----------CCEEEEEC---SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcC----------eeEeeeee---cCeeEEEecCChHHHHHHHHH
Confidence 3445667889999998887766555555 13333333 588999999999999998 54
No 399
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=20.87 E-value=63 Score=17.15 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=15.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHHh
Q psy2204 44 RQARRLYVGNIPFGVTEDEMMEFFNQQ 70 (231)
Q Consensus 44 ~~~r~lfVgNLp~~~te~~L~~~F~~~ 70 (231)
..-|++|||+- .++|+++-+..
T Consensus 3 gqvrtiwvggt-----peelkklkeea 24 (36)
T 2ki0_A 3 GQVRTIWVGGT-----PEELKKLKEEA 24 (36)
T ss_dssp CSCCCCCBCCC-----HHHHHHHHHHH
T ss_pred ceeEEEEecCC-----HHHHHHHHHHH
Confidence 45689999864 57777765543
No 400
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.31 E-value=59 Score=20.93 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=10.7
Q ss_pred ecCCCcEEEEEecC
Q psy2204 89 INLDKNFAFLEFRS 102 (231)
Q Consensus 89 ~~~~kg~aFV~F~~ 102 (231)
+...|||+||+=.+
T Consensus 10 fn~~KGfGFI~~~d 23 (74)
T 2k5n_A 10 WFKDKGFGFIKDEN 23 (74)
T ss_dssp EETTTTEEEEEESS
T ss_pred EECCCCeEEEecCC
Confidence 45669999999764
Done!