Your job contains 1 sequence.
>psy2204
AGVNNEVLNTGAAGQIPANVIIPETTVAAAAAAAVPVVGSTITRQARRLYVGNIPFGVTE
DEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQ
SLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLNG
MQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATECPVPVA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2204
(231 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0005411 - symbol:U2af50 "U2 small nuclear riboprot... 653 8.3e-81 2
UNIPROTKB|E2R0G3 - symbol:U2AF2 "Uncharacterized protein"... 591 4.7e-74 2
UNIPROTKB|Q24JZ8 - symbol:U2AF2 "Uncharacterized protein"... 591 3.2e-73 2
UNIPROTKB|P26368 - symbol:U2AF2 "Splicing factor U2AF 65 ... 591 3.2e-73 2
MGI|MGI:98886 - symbol:U2af2 "U2 small nuclear ribonucleo... 591 3.2e-73 2
RGD|1597319 - symbol:LOC690372 "similar to U2 (RNU2) smal... 591 3.2e-73 2
ZFIN|ZDB-GENE-050706-131 - symbol:u2af2a "U2 small nuclea... 586 1.8e-72 2
ZFIN|ZDB-GENE-040426-1881 - symbol:u2af2b "U2 small nucle... 584 3.7e-72 2
UNIPROTKB|K7ENG2 - symbol:U2AF2 "Splicing factor U2AF 65 ... 463 1.4e-60 2
WB|WBGene00006697 - symbol:uaf-1 species:6239 "Caenorhabd... 485 2.6e-55 2
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 423 6.1e-52 2
DICTYBASE|DDB_G0286395 - symbol:u2af2 "U2 snRNP auxiliary... 342 2.7e-36 2
TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi... 236 4.0e-24 2
TAIR|locus:2115280 - symbol:ATU2AF65A species:3702 "Arabi... 235 9.3e-24 2
ASPGD|ASPL0000008688 - symbol:AN6681 species:162425 "Emer... 204 3.0e-22 2
TAIR|locus:1005716652 - symbol:AT2G33435 species:3702 "Ar... 180 1.4e-12 1
GENEDB_PFALCIPARUM|PF14_0656 - symbol:PF14_0656 "U2 snRNP... 172 7.9e-12 1
UNIPROTKB|Q8IKE9 - symbol:PF14_0656 "U2 snRNP auxiliary f... 172 7.9e-12 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 104 1.6e-05 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 104 1.6e-05 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 116 0.00012 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 110 0.00014 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 94 0.00022 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 94 0.00022 1
POMBASE|SPBC146.07 - symbol:prp2 "U2AF large subunit (U2A... 109 0.00027 2
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 91 0.00048 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 82 0.00063 2
>FB|FBgn0005411 [details] [associations]
symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
Uniprot:Q24562
Length = 416
Score = 653 (234.9 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 131/165 (79%), Positives = 141/165 (85%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXXXGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM 71
A+GQIPA+V+ P+T GSTITRQARRLYVGNIPFGVTE+EMMEFFNQQM
Sbjct: 64 ASGQIPASVV-PDTPQTAVPVV-----GSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM 117
Query: 72 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQ 131
HL GLAQAAG+PVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN KGQSLKIRRPHDYQ
Sbjct: 118 HLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQ 177
Query: 132 PTPGVTDNAAV---AVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
P PG+TD A+ V +GVISTVVPDSPHKIFIGGLPNYLN+DQ
Sbjct: 178 PMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQ 222
Score = 177 (67.4 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 39/57 (68%), Positives = 44/57 (77%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQAPVQIQVPGLTQVGQAGPATE 225
DQ+IAGLNGMQLGDKKLIVQRASVGAKNA + V +QVPGL+ V +GP TE
Sbjct: 262 DQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGPPTE 318
Score = 52 (23.4 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 132 PTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQAIAGLN 179
P V D AVP V+ + + ++++G +P + E++ + N
Sbjct: 69 PASVVPDTPQTAVP--VVGSTITRQARRLYVGNIPFGVTEEEMMEFFN 114
>UNIPROTKB|E2R0G3 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
Length = 471
Score = 591 (213.1 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 116/164 (70%), Positives = 131/164 (79%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXX--XGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T GS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 274
Score = 175 (66.7 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 41/59 (69%), Positives = 45/59 (76%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QAPVQIQVPGL--TQVGQAGPATE 225
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G TE
Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTE 372
>UNIPROTKB|Q24JZ8 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
Length = 475
Score = 591 (213.1 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 116/164 (70%), Positives = 131/164 (79%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXX--XGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T GS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 274
Score = 167 (63.8 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 41/63 (65%), Positives = 45/63 (71%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASG-------QQAPVQIQVPGL--TQVGQAGP 222
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G
Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPLSTINQTPVTLQVPGLMSSQVQMGGH 373
Query: 223 ATE 225
TE
Sbjct: 374 PTE 376
>UNIPROTKB|P26368 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
"C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
Uniprot:P26368
Length = 475
Score = 591 (213.1 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 116/164 (70%), Positives = 131/164 (79%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXX--XGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T GS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 274
Score = 167 (63.8 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 41/63 (65%), Positives = 45/63 (71%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASG-------QQAPVQIQVPGL--TQVGQAGP 222
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G
Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGH 373
Query: 223 ATE 225
TE
Sbjct: 374 PTE 376
>MGI|MGI:98886 [details] [associations]
symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
Uniprot:P26369
Length = 475
Score = 591 (213.1 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 116/164 (70%), Positives = 131/164 (79%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXX--XGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T GS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 274
Score = 167 (63.8 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 41/63 (65%), Positives = 45/63 (71%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASG-------QQAPVQIQVPGL--TQVGQAGP 222
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G
Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGH 373
Query: 223 ATE 225
TE
Sbjct: 374 PTE 376
>RGD|1597319 [details] [associations]
symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
finger domain binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
Length = 475
Score = 591 (213.1 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 116/164 (70%), Positives = 131/164 (79%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXX--XGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T GS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 112 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNA 171
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 172 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 231
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 232 YQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 274
Score = 167 (63.8 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 41/63 (65%), Positives = 45/63 (71%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASG-------QQAPVQIQVPGL--TQVGQAGP 222
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G
Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGH 373
Query: 223 ATE 225
TE
Sbjct: 374 PTE 376
>ZFIN|ZDB-GENE-050706-131 [details] [associations]
symbol:u2af2a "U2 small nuclear RNA auxiliary
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
Uniprot:E7F8Y4
Length = 470
Score = 586 (211.3 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 116/168 (69%), Positives = 131/168 (77%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXX--XGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T GS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 105 AAGQIPATALLPTMTPEGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 164
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSLKIRRPHD
Sbjct: 165 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHD 224
Query: 130 YQPTPGVTDNAAVAVPA----GVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 225 YQPLPGMSENPSVYVPGSLPVGVVSTVVPDSAHKLFIGGLPNYLNDDQ 272
Score = 165 (63.1 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 38/55 (69%), Positives = 43/55 (78%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNAS--G-QQAPVQIQVPGL--TQVGQAG 221
DQAIAGLNGMQLGDKKL+VQRASVG+KN + G Q PV +QVPGL + V Q G
Sbjct: 312 DQAIAGLNGMQLGDKKLLVQRASVGSKNTTLTGINQTPVTLQVPGLMNSSVNQMG 366
>ZFIN|ZDB-GENE-040426-1881 [details] [associations]
symbol:u2af2b "U2 small nuclear RNA auxiliary
factor 2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0046660 "female sex differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1881 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:BX950195 EMBL:BC065869
IPI:IPI00502836 RefSeq:NP_991252.1 UniGene:Dr.77328 SMR:Q6P022
STRING:Q6P022 Ensembl:ENSDART00000023571 GeneID:402989
KEGG:dre:402989 CTD:402989 InParanoid:Q6P022 OMA:HERDKEN
NextBio:20816796 Uniprot:Q6P022
Length = 475
Score = 584 (210.6 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 115/164 (70%), Positives = 130/164 (79%)
Query: 12 AAGQIPANVIIPETTXXXXXXXXXXX--XGSTITRQARRLYVGNIPFGVTEDEMMEFFNQ 69
AAGQIPA ++P T GS +TRQARRLYVGNIPFG+TE+ MM+FFN
Sbjct: 115 AAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNA 174
Query: 70 QMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHD 129
QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+ QSLKIRRPHD
Sbjct: 175 QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQAQSLKIRRPHD 234
Query: 130 YQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
YQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 235 YQPLPGMSENPSVYVP-GVVSTVVPDSIHKLFIGGLPNYLNDDQ 277
Score = 164 (62.8 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 36/47 (76%), Positives = 39/47 (82%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNA---SGQQAPVQIQVPGLT 215
DQAIAGLNGMQL DKKL+VQRASVGAKNA S + PV +QVPGLT
Sbjct: 317 DQAIAGLNGMQLADKKLLVQRASVGAKNATMTSINETPVTLQVPGLT 363
>UNIPROTKB|K7ENG2 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC008735 TIGRFAMs:TIGR01642 HGNC:HGNC:23156
Ensembl:ENST00000590551 Uniprot:K7ENG2
Length = 307
Score = 463 (168.0 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 88/111 (79%), Positives = 98/111 (88%)
Query: 63 MMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 122
MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DETTQAMAFDGI F+GQSL
Sbjct: 1 MMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 60
Query: 123 KIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
KIRRPHDYQP PG+++N +V VP GV+STVVPDS HK+FIGGLPNYLN+DQ
Sbjct: 61 KIRRPHDYQPLPGMSENPSVYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQ 110
Score = 175 (66.7 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 41/59 (69%), Positives = 45/59 (76%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQ---QAPVQIQVPGL--TQVGQAGPATE 225
DQAIAGLNGMQLGDKKL+VQRASVGAKNA+ Q PV +QVPGL +QV G TE
Sbjct: 150 DQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTE 208
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 485 (175.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 100/168 (59%), Positives = 117/168 (69%)
Query: 6 EVLNTGAAGQIPANVIIPETTXXXXXXXXXXXXGSTITRQARRLYVGNIPFGVTEDEMME 65
E N AAGQ+P + G ++T Q+RRLYVGNIPFG E+ M++
Sbjct: 153 EYKNMQAAGQVPRGSV----------QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLD 202
Query: 66 FFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIR 125
FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGINF GQ LK+R
Sbjct: 203 FFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 262
Query: 126 RPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLPNYLNEDQ 173
RP DYQP+ D + +P +ST+V DS +KIFIGGLPNYL EDQ
Sbjct: 263 RPRDYQPSQNTFDMNS-RMP---VSTIVVDSANKIFIGGLPNYLTEDQ 306
Score = 103 (41.3 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 25/54 (46%), Positives = 31/54 (57%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
DQAIAGLNGMQLGDK+L+VQ A + + + G+ AG ATE
Sbjct: 345 DQAIAGLNGMQLGDKQLVVQLACANQQRHNTNLPNSASAIAGIDLSQGAGRATE 398
Score = 62 (26.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 40 STIT-RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-----K 93
STI A ++++G +P +TED++ E + P+ A +N+D K
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELL-----------CSFGPLKAFSLNVDSQGNSK 331
Query: 94 NFAFLEFRSIDETTQAMAFDGIN 116
+AF E+ +D T A G+N
Sbjct: 332 GYAFAEY--LDPTLTDQAIAGLN 352
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 423 (154.0 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 90/154 (58%), Positives = 114/154 (74%)
Query: 40 STITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGL-AQAA----GNPVLACQINLDKN 94
S ITRQARRLYVGNIPFGVT++EMM+FFN Q+ G A+++ GN VL CQ NL+KN
Sbjct: 104 SMITRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKN 163
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNA-----AVAVPA-GV 148
FAFLEFRSIDE +QA+ FDG+ F+GQ+LKIRRPHDYQP P ++ +A + VPA V
Sbjct: 164 FAFLEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPAINV 223
Query: 149 ---------ISTVVPDSPHKIFIGGLPNYLNEDQ 173
++T+VPDSP+KI++GGLP LN+DQ
Sbjct: 224 AQQPAVTLPVTTIVPDSPNKIYVGGLPTCLNQDQ 257
Score = 133 (51.9 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQIQVPGLTQVGQAGPATE 225
D AIAGL+GM LGD++L+VQR+ G KNA P +QVPG++ + G TE
Sbjct: 297 DHAIAGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDPGSPTE 350
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 342 (125.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 68/130 (52%), Positives = 92/130 (70%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+Q+RR+YVGNIP G+++ E+MEFFN + + L G PV+ CQIN K FAF+EFRS
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFCQINAPKCFAFIEFRSP 324
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIG 163
+E T AM FDGI+ K +LKIRRP DYQ T T A +P+ ++ T VPDS +KI++G
Sbjct: 325 EEATNAMRFDGISLKNFTLKIRRPKDYQSTSDNTGGNASLLPS-IVPTNVPDSENKIYVG 383
Query: 164 GLPNYLNEDQ 173
GLP+ L+E+Q
Sbjct: 384 GLPSNLSEEQ 393
Score = 80 (33.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAK 198
D A + LNG+ L DK L+VQRAS+G+K
Sbjct: 433 DVACSKLNGIPLADKTLVVQRASIGSK 459
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 236 (88.1 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 56/140 (40%), Positives = 77/140 (55%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG +P E + FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 251 TRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 310
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVP---AGVI-----STVV 153
S++E + AMA DGI +G +K+RRP DY P+ T + P G + ST
Sbjct: 311 SVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGG 370
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
+ P +IF+GGLP Y E Q
Sbjct: 371 LEGPDRIFVGGLPYYFTEVQ 390
Score = 72 (30.4 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA GA +Q V
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEV 465
>TAIR|locus:2115280 [details] [associations]
symbol:ATU2AF65A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0042742 "defense
response to bacterium" evidence=IEP] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 GO:GO:0042742 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161589 GO:GO:0000398 EMBL:Z99708 HSSP:P26368 EMBL:AF462805
EMBL:AY080711 EMBL:AY143980 EMBL:BT000965 EMBL:BX827587
IPI:IPI00524736 IPI:IPI00525889 IPI:IPI00534734 PIR:C85433
RefSeq:NP_195387.1 RefSeq:NP_849509.1 RefSeq:NP_974695.1
UniGene:At.21204 ProteinModelPortal:O23212 SMR:O23212 IntAct:O23212
STRING:O23212 PaxDb:O23212 PRIDE:O23212 EnsemblPlants:AT4G36690.1
GeneID:829822 KEGG:ath:AT4G36690 TAIR:At4g36690 eggNOG:NOG298004
HOGENOM:HOG000180745 InParanoid:O23212 KO:K12837 OMA:EDIRMEA
PhylomeDB:O23212 ProtClustDB:CLSN2915914 Genevestigator:O23212
TIGRFAMs:TIGR01642 Uniprot:O23212
Length = 573
Score = 235 (87.8 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 59/158 (37%), Positives = 83/158 (52%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMH-LSGLAQAAGNPVLACQINLDKNFAFLEFR 101
TR ARR+YVG + E + FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVT----------DNAAVAVPAGVIST 151
S++E + AM+ DGI F+G +K+RRP DY P+ T + AAV + G
Sbjct: 295 SVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGG 354
Query: 152 VVPDSPHKIFIGGLPNYLNEDQ------AIAGLNGMQL 183
+ + P +IF+GGLP Y E Q + GL G L
Sbjct: 355 L--EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDL 390
Score = 69 (29.3 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPV 207
D A A LNG+++GDK L V+RA+ G +Q V
Sbjct: 414 DIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENV 449
>ASPGD|ASPL0000008688 [details] [associations]
symbol:AN6681 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001301 TIGRFAMs:TIGR01642
ProteinModelPortal:C8V1L6 EnsemblFungi:CADANIAT00007466 OMA:CISAQIS
Uniprot:C8V1L6
Length = 547
Score = 204 (76.9 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 50/140 (35%), Positives = 82/140 (58%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQA+RL+V N+P T + ++ FFN Q++ + Q+ +P ++ QI+ D +FA LEF+S
Sbjct: 220 SRQAKRLFVYNLPPNATVENLVSFFNLQLNGLNVIQSV-DPCISAQISDDHSFALLEFKS 278
Query: 103 IDETTQAMAFDGI----------NFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTV 152
++TT A+A DGI N + L++RRP DY P + + +G+
Sbjct: 279 PNDTTVALALDGITMGEHESNGENGAAKGLEVRRPKDYI-VPNLAEQDLEGA-SGMKD-- 334
Query: 153 VPDSPHKIFIGGLPNYLNED 172
VPDSP+KI + +P Y+ E+
Sbjct: 335 VPDSPNKICVSNIPQYIPEE 354
Score = 86 (35.3 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 174 AIAGLNGMQLGDKKLIVQRASVGAKNASG 202
A+ GLNGM+LGD+ L V RAS+G A+G
Sbjct: 397 AVQGLNGMELGDRHLKVVRASIGMTQAAG 425
>TAIR|locus:1005716652 [details] [associations]
symbol:AT2G33435 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00541152
RefSeq:NP_850209.1 UniGene:At.37925 ProteinModelPortal:F4IVU7
SMR:F4IVU7 PRIDE:F4IVU7 EnsemblPlants:AT2G33435.1 GeneID:817908
KEGG:ath:AT2G33435 OMA:KEDHVGA Uniprot:F4IVU7
Length = 979
Score = 180 (68.4 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEFR 101
TR+ RRLY N+P +E ++E FN M SG G+ P ++C IN +K+ A +EF
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEFL 933
Query: 102 SIDETTQAMAFDGINFKGQSLKIRRPHDYQPT 133
+ + + A++ DG +F G +LKIRRP DY T
Sbjct: 934 TPQDASAALSLDGCSFAGSNLKIRRPKDYVRT 965
>GENEDB_PFALCIPARUM|PF14_0656 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor,
putative" species:5833 "Plasmodium falciparum" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 172 (65.6 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 57/183 (31%), Positives = 89/183 (48%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 94
++ R+LY+GNIP ++++++FFN + S L G+ PV+ C+I N D
Sbjct: 453 KKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFNSDSR 512
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP-G-------VTD-NAAVAV- 144
F FLEFR++ T + D I + L+I RPHDY P P G TD N V
Sbjct: 513 FCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMDVFEK 572
Query: 145 --PAGVISTVVP-DSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKKL--IVQRASVGAKN 199
P+ ++ D ++++I LP+ L ++Q L Q GD K I++ + G
Sbjct: 573 LRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLE--QFGDLKAFNIIKDLNTGLNK 630
Query: 200 ASG 202
G
Sbjct: 631 GYG 633
>UNIPROTKB|Q8IKE9 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 172 (65.6 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 57/183 (31%), Positives = 89/183 (48%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 94
++ R+LY+GNIP ++++++FFN + S L G+ PV+ C+I N D
Sbjct: 453 KKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFNSDSR 512
Query: 95 FAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTP-G-------VTD-NAAVAV- 144
F FLEFR++ T + D I + L+I RPHDY P P G TD N V
Sbjct: 513 FCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMDVFEK 572
Query: 145 --PAGVISTVVP-DSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKKL--IVQRASVGAKN 199
P+ ++ D ++++I LP+ L ++Q L Q GD K I++ + G
Sbjct: 573 LRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLE--QFGDLKAFNIIKDLNTGLNK 630
Query: 200 ASG 202
G
Sbjct: 631 GYG 633
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC--QINLDKNFAFLEFRSIDET 106
+YVGN PF TED++ +F+Q ++S N + C + + FAF+EF
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVS-------NVRIVCDRETGRPRGFAFVEFTEEAAA 58
Query: 107 TQAM-AFDGINFKGQSLKI 124
+A+ F+G++F G++L++
Sbjct: 59 QRAVDQFNGVDFNGRALRV 77
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC--QINLDKNFAFLEFRSIDET 106
+YVGN PF TED++ +F+Q ++S N + C + + FAF+EF
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVS-------NVRIVCDRETGRPRGFAFVEFTEEAAA 58
Query: 107 TQAM-AFDGINFKGQSLKI 124
+A+ F+G++F G++L++
Sbjct: 59 QRAVDQFNGVDFNGRALRV 77
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 44/158 (27%), Positives = 71/158 (44%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RLYVGN+P+ +T E+ + F + + + Q + V + + F F+ SI+E
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDV-QIVYDKVT----DRSRGFGFVTMGSIEEAK 171
Query: 108 QAMA-FDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGGLP 166
+AM F+ G+++K+ P P G + + S V DSPHK++ G L
Sbjct: 172 EAMQMFNSSQIGGRTVKVNFPE--VPRGGENEVMRTKIRDNNRSYV--DSPHKVYAGNLG 227
Query: 167 NYLNEDQAIAGLNGMQLG--DKKLIVQRASVGAKNASG 202
L Q + G Q G K+I +R + G G
Sbjct: 228 WNLTS-QGLKDAFGDQPGVLGAKVIYER-NTGRSRGFG 263
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 30/101 (29%), Positives = 47/101 (46%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLA----QAAGNPVLACQINLDKNFAF 97
I R +YVGN+ +G T DE+ +FN H++ + + G+P K FA+
Sbjct: 61 IDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHP---------KGFAY 111
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTD 138
+EF + AMA D F+G+ +K+ P TD
Sbjct: 112 IEFSDRESVRTAMALDETLFRGRVIKVSPKRTNIPGFSTTD 152
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
+T ++YVG++ + VT DE+ FF Q G + A ++ + K FAF+ +
Sbjct: 13 MTMSQNKIYVGSLSYDVTADELQSFFGQY----GEIEEA-KLIMDRETGRSKGFAFITYG 67
Query: 102 SIDETTQAMA-FDGINFKGQSLKI 124
+ D +A++ +GI+ +G+ +++
Sbjct: 68 TQDAAQEAVSKANGIDLQGRKIRV 91
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
+T ++YVG++ + VT DE+ FF Q G + A ++ + K FAF+ +
Sbjct: 13 MTMSQNKIYVGSLSYDVTADELQSFFGQY----GEIEEA-KLIMDRETGRSKGFAFITYG 67
Query: 102 SIDETTQAMA-FDGINFKGQSLKI 124
+ D +A++ +GI+ +G+ +++
Sbjct: 68 TQDAAQEAVSKANGIDLQGRKIRV 91
>POMBASE|SPBC146.07 [details] [associations]
symbol:prp2 "U2AF large subunit (U2AF-59)" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=IDA] [GO:0000348 "mRNA branch site recognition"
evidence=ISS] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=TAS] [GO:0030515 "snoRNA binding"
evidence=TAS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC146.07 GO:GO:0000166 EMBL:CU329671 GO:GO:0030515
GO:GO:0003729 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0000243 GO:GO:0000349 GO:GO:0005686 GO:GO:0045292
OrthoDB:EOG44XNS9 GO:GO:0000348 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 OMA:TQMGGLP EMBL:L22577 EMBL:AB027985 PIR:A48250
RefSeq:NP_595396.1 ProteinModelPortal:P36629 IntAct:P36629
STRING:P36629 PRIDE:P36629 EnsemblFungi:SPBC146.07.1 GeneID:2539645
KEGG:spo:SPBC146.07 NextBio:20800799 Uniprot:P36629
Length = 517
Score = 109 (43.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 36/134 (26%), Positives = 55/134 (41%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+RQARRL V IP ED + F + + + + ++NFA LE +
Sbjct: 195 SRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPETKHFSSVNVCKEENFAILEVAT 254
Query: 103 IDETTQAMAFDGINFKGQS-LKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIF 161
++ T ++ LK +R +Y P +T + V DS KI+
Sbjct: 255 PEDATFLWGLQSESYSNDVFLKFQRIQNYI-VPQITPEVSQKRSDDYAKNDVLDSKDKIY 313
Query: 162 IGGLPNYLNEDQAI 175
I LP L EDQ +
Sbjct: 314 ISNLPLNLGEDQVV 327
Score = 45 (20.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 167 NYLNEDQAIAGLNGMQLGDKKLIVQRASVGAKNA 200
N + + AI+GL+G KL Q A VG A
Sbjct: 360 NPSDAEVAISGLDGKDTYGNKLHAQFACVGLNQA 393
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 91 (37.1 bits), Expect = 0.00048, P = 0.00048
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC--QINLDKNFAFLEFRSIDET 106
+YVGN PF TE+E+ FF S + Q N + C + + FAF+EF
Sbjct: 7 VYVGNAPFQTTEEELGNFF------SSIGQI-NNVRIVCDRETGRPRGFAFIEFAEEGSA 59
Query: 107 TQAMA-FDGINFKGQSLKI 124
+A+ +G F G+ L++
Sbjct: 60 QRAVEQMNGAEFNGRPLRV 78
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 82 (33.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN---- 94
G+ R L+VGN+ VTE+ + E F+Q AG PV+ +I DK+
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQ----------AG-PVIKVKIPKDKDGKPK 50
Query: 95 -FAFLEFRSIDETTQAM-AFDGINFKGQSLKIR 125
FAF+ F+ AM +GI G+ +KI+
Sbjct: 51 QFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQ 83
Score = 43 (20.2 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 157 PHKIFIGGLPNYLNEDQAI 175
PHK+ + +PN + E QA+
Sbjct: 90 PHKMSVCHIPNIMLEIQAL 108
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 231 219 0.00092 112 3 11 22 0.41 33
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 563 (60 KB)
Total size of DFA: 149 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:07
No. of threads or processors used: 24
Search cpu time: 18.54u 0.08s 18.62t Elapsed: 00:00:11
Total cpu time: 18.55u 0.08s 18.63t Elapsed: 00:00:18
Start: Thu Aug 15 14:05:19 2013 End: Thu Aug 15 14:05:37 2013