RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2204
(231 letters)
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 94.8 bits (235), Expect = 5e-26
Identities = 75/90 (83%), Positives = 80/90 (88%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
ARRLYVGNIPFG+TE+ MM+FFN QM L GL QA GNPVLA QIN DKNFAFLEFRS+DE
Sbjct: 1 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 60
Query: 106 TTQAMAFDGINFKGQSLKIRRPHDYQPTPG 135
TTQAMAFDGI F+GQSLKIRRPHDYQP PG
Sbjct: 61 TTQAMAFDGIIFQGQSLKIRRPHDYQPLPG 90
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 63.9 bits (155), Expect = 3e-14
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
Q R+L++G + F T++ + F Q + + F F+ + +++
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGT-----LTDCVVMRDPNTKRSRGFGFVTYATVE 59
Query: 105 ETTQAMAFDGINFKGQSLKIRR 126
E AM G+ ++ +R
Sbjct: 60 EVDAAMNARPHKVDGRVVEPKR 81
Score = 29.2 bits (65), Expect = 0.10
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
P+ K+FIGGL ++
Sbjct: 3 PEQLRKLFIGGLSFETTDES 22
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 63.6 bits (154), Expect = 3e-14
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+ R +Y+ P T D++ E+ + + K F+ F SI
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQ------VLNIQMRRTLHKAFKGSIFVVFDSI 57
Query: 104 DETTQAMAFDGINFKGQSLKIRRPHDY 130
+ + + G +K L I DY
Sbjct: 58 ESAKKFVETPGQKYKETDLLILFKDDY 84
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 61.2 bits (148), Expect = 4e-13
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
Q R+L++G + F TE+ + ++ Q + + F F+ F S+
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGK-----LTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 105 ETTQAMAFDGINFKGQSLKIRR 126
E AMA + G+ ++ +R
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKR 95
Score = 28.1 bits (62), Expect = 0.35
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
+ K+FIGGL E+
Sbjct: 17 KEQFRKLFIGGLSFETTEES 36
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 59.3 bits (143), Expect = 2e-12
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
R AR L N+ F +TEDE+ E F + L Q K A++EF+S
Sbjct: 13 VRAARTLLAKNLSFNITEDELKEVFEDALE----------IRLVSQDGKSKGIAYIEFKS 62
Query: 103 IDETTQAM-AFDGINFKGQSLKIRRPHDYQPTPG 135
+ + + G G+S+ + + T G
Sbjct: 63 EADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTRG 96
Score = 28.5 bits (63), Expect = 0.21
Identities = 4/76 (5%), Positives = 14/76 (18%), Gaps = 36/76 (47%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ------------------------------------AIAG 177
+ + L + ED+ +
Sbjct: 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE 72
Query: 178 LNGMQLGDKKLIVQRA 193
G ++ + + +
Sbjct: 73 KQGAEIDGRSVSLYYT 88
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 58.9 bits (142), Expect = 2e-12
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
+ LYV N+ +E+ + + FN ++ +++AF+ F
Sbjct: 4 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKP-----------GAVERVKKIRDYAFVHFS 52
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRR 126
+ ++ +AM A +G G +++
Sbjct: 53 NREDAVEAMKALNGKVLDGSPIEVTL 78
Score = 28.5 bits (63), Expect = 0.19
Identities = 9/70 (12%), Positives = 16/70 (22%), Gaps = 35/70 (50%)
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------AIAGLNGMQL 183
+++ L +E+ A+ LNG L
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL 69
Query: 184 GDKKLIVQRA 193
+ V A
Sbjct: 70 DGSPIEVTLA 79
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 58.8 bits (142), Expect = 3e-12
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
+ +++ LYVGN+ F TE+++ E F++ L F F+E+
Sbjct: 3 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGD-----IKKIIMGLDKMKKTACGFCFVEYY 57
Query: 102 SIDETTQAM-AFDGINFKGQSLKI 124
S + AM +G + ++
Sbjct: 58 SRADAENAMRYINGTRLDDRIIRT 81
Score = 27.2 bits (60), Expect = 0.59
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRAS 194
+ A+ +NG +L D+ + +
Sbjct: 63 ENAMRYINGTRLDDRIIRTDWDA 85
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 58.2 bits (140), Expect = 3e-12
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
++++VG I E + ++F Q + + FAF+ F D
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGK-----IEVIEIMTDRGSGKKRGFAFVTFDDHDSV 57
Query: 107 TQAMAFDGINFKGQSLKIRR 126
+ + G + ++R+
Sbjct: 58 DKIVIQKYHTVNGHNCEVRK 77
Score = 26.6 bits (58), Expect = 0.77
Identities = 9/75 (12%), Positives = 14/75 (18%), Gaps = 40/75 (53%)
Query: 159 KIFIGGLPNYLNEDQ----------------------------------------AIAGL 178
KIF+GG+ E I
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 179 NGMQLGDKKLIVQRA 193
+ V++A
Sbjct: 64 KYHTVNGHNCEVRKA 78
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 58.9 bits (142), Expect = 3e-12
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAF 97
R AR ++ + + ++ +FF+ V +I D+N A+
Sbjct: 16 RDARTVFCMQLAARIRPRDLEDFFSAVGK-----------VRDVRIISDRNSRRSKGIAY 64
Query: 98 LEFRSIDETTQAMAFDGINFKGQSLKIRR 126
+EF I A+ G G + ++
Sbjct: 65 VEFCEIQSVPLAIGLTGQRLLGVPIIVQA 93
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 57.7 bits (139), Expect = 5e-12
Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + + T+ ++ ++F++ L + F F+ F+ +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGE-----VVDCTLKLDPITGRSRGFGFVLFKESESVD 55
Query: 108 QAMAFDGINFKGQSLKIRR 126
+ M G+ + +R
Sbjct: 56 KVMDQKEHKLNGKVIDPKR 74
Score = 25.3 bits (55), Expect = 1.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 159 KIFIGGLPNYLNEDQ 173
K+FIGGL +
Sbjct: 1 KMFIGGLSWDTTKKD 15
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 57.4 bits (138), Expect = 6e-12
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+++VG + T +++ +F Q + N + F F+ F S D
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGK-----VDDAMLMFDKTTNRHRGFGFVTFESEDIVE 55
Query: 108 QAMAFDGINFKGQSLKIRR 126
+ + ++ ++
Sbjct: 56 KVCEIHFHEINNKMVECKK 74
Score = 26.6 bits (58), Expect = 0.83
Identities = 8/75 (10%), Positives = 20/75 (26%), Gaps = 40/75 (53%)
Query: 159 KIFIGGLPNYLNED----------------------------------------QAIAGL 178
KIF+GGL + + + +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 179 NGMQLGDKKLIVQRA 193
+ ++ +K + ++A
Sbjct: 61 HFHEINNKMVECKKA 75
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 56.3 bits (135), Expect = 2e-11
Identities = 8/84 (9%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
T + R + + N+ + ++ ++ + + AF+ F +
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSF---NNCCAFMVFEN 57
Query: 103 IDETTQAMAFDGINFKGQSLKIRR 126
D +A+ + + + +
Sbjct: 58 KDSAERALQMNRSLLGNREISVSL 81
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 55.4 bits (133), Expect = 5e-11
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
G Q RL+VGN+P +TE+EM + F + I+ DK F F+
Sbjct: 1 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGK-----------AGEVFIHKDKGFGFI 49
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRR 126
+ A D + +G+ L++R
Sbjct: 50 RLETRTLAEIAKVELDNMPLRGKQLRVRF 78
Score = 31.1 bits (70), Expect = 0.023
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 35/74 (47%)
Query: 159 KIFIGGLPNYLNEDQ-----------------------------------AIAGLNGMQL 183
++F+G LP + E++ A L+ M L
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL 69
Query: 184 GDKKLIVQRASVGA 197
K+L V+ A A
Sbjct: 70 RGKQLRVRFACHSA 83
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.1 bits (132), Expect = 7e-11
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+RL+V NIPF + ++ + F Q + + + K F F+ F +
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-------DVEIIFNERGSKGFGFVTFENS 61
Query: 104 DETTQAM-AFDGINFKGQSLKIRR 126
+ +A G +G+ +++
Sbjct: 62 ADADRAREKLHGTVVEGRKIEVNN 85
Score = 32.7 bits (74), Expect = 0.007
Identities = 8/79 (10%), Positives = 18/79 (22%), Gaps = 39/79 (49%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ---------------------------------------A 174
+P ++ + +P + A
Sbjct: 8 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 67
Query: 175 IAGLNGMQLGDKKLIVQRA 193
L+G + +K+ V A
Sbjct: 68 REKLHGTVVEGRKIEVNNA 86
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 54.9 bits (132), Expect = 7e-11
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+ ++ V NIPF + E+ E F+ G + P + F F++F +
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITK 61
Query: 104 DETTQAMA--FDGINFKGQSLKIRR 126
+ +A + G+ L +
Sbjct: 62 QDAKKAFNALCHSTHLYGRRLVLEW 86
Score = 24.5 bits (53), Expect = 6.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
+ KI + +P N+ +
Sbjct: 5 KQTTSKILVRNIPFQANQRE 24
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 54.6 bits (131), Expect = 7e-11
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+L V N+ FGV++ ++ E F + L V + A + F +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKA------AVHYDRSGRSLGTADVHFERKADAL 55
Query: 108 QAM-AFDGINFKGQSLKIR 125
+AM ++G+ G+ + I+
Sbjct: 56 KAMKQYNGVPLDGRPMNIQ 74
Score = 28.4 bits (63), Expect = 0.19
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRAS 194
+A+ NG+ L + + +Q +
Sbjct: 55 LKAMKQYNGVPLDGRPMNIQLVT 77
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 54.3 bits (130), Expect = 1e-10
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
A +L++G +P + +D++ E A N V L K +AF E+ I+
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSF-----GPLKAFNLVKDSATGLSKGYAFCEYVDINV 55
Query: 106 TTQAM-AFDGINFKGQSLKIRR 126
T QA+ +G+ + L ++R
Sbjct: 56 TDQAIAGLNGMQLGDKKLLVQR 77
Score = 43.9 bits (103), Expect = 8e-07
Identities = 40/84 (47%), Positives = 43/84 (51%), Gaps = 41/84 (48%)
Query: 158 HKIFIGGLPNYLNEDQ-----------------------------------------AIA 176
HK+FIGGLPNYLN+DQ AIA
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 177 GLNGMQLGDKKLIVQRASVGAKNA 200
GLNGMQLGDKKL+VQRASVGAKNA
Sbjct: 62 GLNGMQLGDKKLLVQRASVGAKNA 85
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 56.5 bits (135), Expect = 1e-10
Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 20/129 (15%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
Q R+L++G + F T++ + F Q L+ + + F F+ + +++
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDC-----VVMRDPNTKRSRGFGFVTYATVE 59
Query: 105 ETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPAGVISTVVPDSPHKIFIGG 164
E AM G+ ++ +R + + + + KIF+GG
Sbjct: 60 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAH---------------LTVKKIFVGG 104
Query: 165 LPNYLNEDQ 173
+ E
Sbjct: 105 IKEDTEEHH 113
Score = 47.3 bits (111), Expect = 2e-07
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD------KNFAFLEF 100
++++VG I E + ++F Q + +I D + FAF+ F
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQY-----------GKIEVIEIMTDRGSGKKRGFAFVTF 146
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRR 126
D + + G + ++R+
Sbjct: 147 DDHDSVDKIVIQKYHTVNGHNCEVRK 172
Score = 28.4 bits (62), Expect = 0.47
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
P+ K+FIGGL ++
Sbjct: 3 PEQLRKLFIGGLSFETTDES 22
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 54.3 bits (130), Expect = 1e-10
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
Q +YVG + V+E + E F Q + + + F+EF S
Sbjct: 6 RNQDATVYVGGLDEKVSEPLLWELFLQAGP-----VVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 103 IDETTQAM-AFDGINFKGQSLKIRR 126
++ A+ D I G+ +++ +
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNK 85
Score = 31.5 bits (71), Expect = 0.021
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKN 199
D AI ++ ++L K + V +AS KN
Sbjct: 65 DYAIKIMDMIKLYGKPIRVNKASAHNKN 92
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 53.9 bits (129), Expect = 1e-10
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
L++ N+ F TE+ + F++ + + + L F F+E++ ++ +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK--AGVLLSMGFGFVEYKKPEQAQK 58
Query: 109 AM-AFDGINFKGQSLKIRR 126
A+ G G L++R
Sbjct: 59 ALKQLQGHTVDGHKLEVRI 77
Score = 30.0 bits (67), Expect = 0.064
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAKNA 200
+A+ L G + KL V+ + K A
Sbjct: 57 QKALKQLQGHTVDGHKLEVRISERATKPA 85
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 54.0 bits (129), Expect = 2e-10
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 42 ITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
+ +L+VG + F E + + F++ + V + + F F+ F
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQ-----ISEVVVVKDRETQRSRGFGFVTFE 55
Query: 102 SIDETTQAM-AFDGINFKGQSLKIRR 126
+ID+ AM A +G + G+ +++ +
Sbjct: 56 NIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Score = 32.8 bits (74), Expect = 0.006
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 41/86 (47%)
Query: 157 PHKIFIGGLPNYLNEDQ-----------------------------------------AI 175
K+F+GGL NE A+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 176 AGLNGMQLGDKKLIVQRASVGAKNAS 201
+NG + +++ V +A + N S
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRS 90
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.3 bits (130), Expect = 2e-10
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
++GN+P+ VTE+ + EFF A P K F + EF
Sbjct: 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLNI-----SAVRLPREPSNPERLKGFGYAEFED 66
Query: 103 IDETTQAMAFDGINFKGQSLKI-----RRPHDYQPTPG 135
+D A++ + + + +++ + D P+ G
Sbjct: 67 LDSLLSALSLNEESLGNKRIRVDVADQAQDKDSGPSSG 104
Score = 28.5 bits (63), Expect = 0.24
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 41/98 (41%)
Query: 146 AGVISTVVPDSP-HKIFIGGLPNYLNED-------------------------------- 172
+G + +P SP + F+G LP + E+
Sbjct: 3 SGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
Query: 173 --------QAIAGLNGMQLGDKKLIVQRASVGAKNASG 202
+ LN LG+K++ V A SG
Sbjct: 63 EFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDKDSG 100
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 54.3 bits (130), Expect = 2e-10
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R LY+ N+P+ +T +EM + F + + + + A++ + I +
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRV--------GNTPETRGTAYVVYEDIFDA 59
Query: 107 TQAM-AFDGINFKGQSLKIR 125
A G N + L +
Sbjct: 60 KNACDHLSGFNVCNRYLVVL 79
Score = 30.0 bits (67), Expect = 0.083
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 38/78 (48%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ--------------------------------------AI 175
P+ ++I LP + ++ A
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAC 63
Query: 176 AGLNGMQLGDKKLIVQRA 193
L+G + ++ L+V
Sbjct: 64 DHLSGFNVCNRYLVVLYY 81
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.0 bits (127), Expect = 3e-10
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+++VG + E+++ E+F + + + N + F F+ F+ +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGE-----VESIELPMDNKTNKRRGFCFITFKEEEPVK 55
Query: 108 QAMAFDGINFKGQSLKIRR 126
+ M N +I+
Sbjct: 56 KIMEKKYHNVGLSKCEIKV 74
Score = 26.1 bits (57), Expect = 0.99
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 159 KIFIGGLPNYLNEDQ 173
KIF+GGL E++
Sbjct: 1 KIFVGGLSPDTPEEK 15
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 53.1 bits (127), Expect = 4e-10
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 44 RQARRLYVGNIPFGVTEDE----MMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 99
R +Y+ N+ + +DE + F++ +L + + AF+
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQ--------ILDILVSRSLKMRGQAFVI 52
Query: 100 FRSIDETTQAM-AFDGINFKGQSLKIRR 126
F+ + T A+ + G F + ++I+
Sbjct: 53 FKEVSSATNALRSMQGFPFYDKPMRIQY 80
Score = 29.6 bits (66), Expect = 0.088
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
A+ + G DK + +Q A
Sbjct: 60 TNALRSMQGFPFYDKPMRIQYA 81
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 52.8 bits (126), Expect = 5e-10
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
GS+ + + RL+V N+ + +E+++ + F+ + + + K FAF+
Sbjct: 1 GSSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGP-----LSELHYPIDSLTKKPKGFAFV 55
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRR 126
F + +A DG F+G+ L +
Sbjct: 56 TFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84
Score = 31.2 bits (70), Expect = 0.028
Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 43/94 (45%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ---------------------------------------- 173
++F+ L +E+
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64
Query: 174 -AIAGLNGMQLGDKKLIVQRASVGAKNASGQQAP 206
A A ++G + L V ++ K + Q P
Sbjct: 65 KAYAEVDGQVFQGRMLHVLPST--IKKEASQSGP 96
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 52.3 bits (125), Expect = 5e-10
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
LYV N+P +T+D++ F + + N + + AF+ + +E
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQ-----KNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 107 TQAM-AFDGINFKGQSLKIR 125
+A+ A + + +G S +
Sbjct: 62 QEAISALNNVIPEGGSQPLS 81
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 52.4 bits (125), Expect = 6e-10
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
LYV +P +T+ E+ + F+Q ++ + + F+ F E
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGR-----IITSRILVDQVTGVSRGVGFIRFDKRIEA 61
Query: 107 TQAM-AFDGINFKGQSLKIR 125
+A+ +G G + I
Sbjct: 62 EEAIKGLNGQKPSGATEPIT 81
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 51.9 bits (124), Expect = 7e-10
Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
++++G + + T++ + E+F Q + + F F+ F
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGE-----VKECLVMRDPLTKRSRGFGFVTFMDQAGVD 56
Query: 108 QAMAFDGINFKGQSLKIRR 126
+ +A +++ +
Sbjct: 57 KVLAQSRHELDSKTIDPKV 75
Score = 25.7 bits (56), Expect = 1.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 159 KIFIGGLPNYLNEDQ 173
K+FIGGL ++
Sbjct: 2 KMFIGGLSWQTTQEG 16
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 51.6 bits (123), Expect = 1e-09
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+LY+GN+ VT D++ + F + LA Q+ L +AF+++ +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKL-----------PLAGQVLLKSGYAFVDYPDQNWAI 51
Query: 108 QAM-AFDG-INFKGQSLKIRR 126
+A+ G + G+ +++
Sbjct: 52 RAIETLSGKVELHGKIMEVDY 72
Score = 27.0 bits (59), Expect = 0.54
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 36/72 (50%)
Query: 158 HKIFIGGLPNYLNEDQ-----------------------------------AIAGLNG-M 181
+K++IG L + D AI L+G +
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKV 61
Query: 182 QLGDKKLIVQRA 193
+L K + V +
Sbjct: 62 ELHGKIMEVDYS 73
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 51.5 bits (123), Expect = 1e-09
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+ + +Y G I G+T+ M + F+ ++ ++ +K ++F+ F +
Sbjct: 15 SPKNCTVYCGGIASGLTDQLMRQTFSPFG-----------QIMEIRVFPEKGYSFVRFST 63
Query: 103 IDETTQAM-AFDGINFKGQSLKI 124
+ A+ + +G +G +K
Sbjct: 64 HESAAHAIVSVNGTTIEGHVVKC 86
Score = 25.3 bits (55), Expect = 3.3
Identities = 7/75 (9%), Positives = 15/75 (20%), Gaps = 35/75 (46%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ-----------------------------------AIAGL 178
++ GG+ + L + AI +
Sbjct: 15 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV 74
Query: 179 NGMQLGDKKLIVQRA 193
NG + +
Sbjct: 75 NGTTIEGHVVKCYWG 89
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 50.9 bits (121), Expect = 2e-09
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+++GN+ + E + + F+ G+ + K +AF+ F S D +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTGNSKGYAFINFASFDASDA 56
Query: 109 AM-AFDGINFKGQSLKIRR 126
A+ A +G + + +
Sbjct: 57 AIEAMNGQYLCNRPITVSY 75
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 51.7 bits (123), Expect = 2e-09
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R R ++VGNIP+ TE+++ + F++ + V + K + F E++
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGP-----VVSFRLVYDRETGKPKGYGFCEYQDQ 60
Query: 104 DETTQAM-AFDGINFKGQSLKIRR 126
+ AM +G F G++L++
Sbjct: 61 ETALSAMRNLNGREFSGRALRVDN 84
Score = 31.3 bits (70), Expect = 0.032
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVGAK----NASGQQAPV 207
A+ LNG + + L V A+ + G APV
Sbjct: 64 LSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPV 103
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 50.8 bits (121), Expect = 2e-09
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
Q R LYVGN+ VTE +++ F+Q + + + F+EF
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-------ITEHTSNDPYCFVEFYEH 58
Query: 104 DETTQAM-AFDGINFKGQSLKIRR 126
+ A+ A +G G+ +K+
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNW 82
Score = 31.2 bits (70), Expect = 0.023
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 39/77 (50%)
Query: 157 PHKIFIGGLPNYLNEDQ---------------------------------------AIAG 177
P +++G L + E A+A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA 67
Query: 178 LNGMQLGDKKLIVQRAS 194
+NG ++ K++ V A+
Sbjct: 68 MNGRKILGKEVKVNWAT 84
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 50.2 bits (119), Expect = 3e-09
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
LY+ + G T+ ++++ + +L N K + F++F S +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGK-----IVSTKAILDKTTNKCKGYGFVDFDSPSAAQK 55
Query: 109 AM-AFDGINFKGQSLK 123
A+ A + Q K
Sbjct: 56 AVTALKASGVQAQMAK 71
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 49.6 bits (118), Expect = 5e-09
Identities = 10/80 (12%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
+++ N+ + + + F+ + + + C N K + F+ F + +
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGN-------ILSCKVVCDENGSKGYGFVHFETQEAAE 62
Query: 108 QAM-AFDGINFKGQSLKIRR 126
+A+ +G+ + + + R
Sbjct: 63 RAIEKMNGMLLNDRKVFVGR 82
Score = 30.4 bits (68), Expect = 0.043
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
++AI +NGM L D+K+ V R
Sbjct: 62 ERAIEKMNGMLLNDRKVFVGRF 83
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 50.2 bits (119), Expect = 5e-09
Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 13/89 (14%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
G R R+ V +P + ++ + + + +
Sbjct: 8 GPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVC------------YADVQKDGMGMV 55
Query: 99 EFRSIDETTQAM-AFDGINFKGQSLKIRR 126
E+ ++ A+ D F+ +
Sbjct: 56 EYLRKEDMEYALRKLDDTKFRSHEGETSY 84
Score = 32.1 bits (72), Expect = 0.014
Identities = 9/83 (10%), Positives = 19/83 (22%), Gaps = 34/83 (40%)
Query: 154 PDSPHKIFIGGLPNYLNED----------------------------------QAIAGLN 179
S ++ + GLP + A+ L+
Sbjct: 12 RRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLD 71
Query: 180 GMQLGDKKLIVQRASVGAKNASG 202
+ + V + +SG
Sbjct: 72 DTKFRSHEGETSYIRVYPERSSG 94
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 49.3 bits (117), Expect = 6e-09
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
L V +P +T++E F + V + F+ + +
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGE-----IESCKLVRDKITGQSLGYGFVNYIDPKDA 57
Query: 107 TQAM-AFDGINFKGQSLKIRR 126
+A+ +G+ + +++K+
Sbjct: 58 EKAINTLNGLRLQTKTIKVSY 78
Score = 29.7 bits (66), Expect = 0.062
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
++AI LNG++L K + V A
Sbjct: 58 EKAINTLNGLRLQTKTIKVSYA 79
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.3 bits (117), Expect = 7e-09
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
+ V N+ E ++ E F + K FAF+ F ++
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGS-----ISRIYLAKDKTTGQSKGFAFISFHRREDA 63
Query: 107 TQAM-AFDGINFKGQSLKIRR 126
+A+ G + L +
Sbjct: 64 ARAIAGVSGFGYDHLILNVEW 84
Score = 29.6 bits (66), Expect = 0.087
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
+AIAG++G L V+ A
Sbjct: 64 ARAIAGVSGFGYDHLILNVEWA 85
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 49.1 bits (116), Expect = 8e-09
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 16/92 (17%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
R+ V +P + ++ + + + +EF ++ T
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVC------------YADVYRDGTGVVEFVRKEDMT 49
Query: 108 QAM-AFDGINFKGQSLK---IRRPHDYQPTPG 135
A+ D F+ + IR D +P
Sbjct: 50 YAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 81
Score = 29.5 bits (65), Expect = 0.080
Identities = 6/72 (8%), Positives = 15/72 (20%), Gaps = 34/72 (47%)
Query: 158 HKIFIGGLPNYLNE----------------------------------DQAIAGLNGMQL 183
+++ + GLP + A+ L+ +
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 60
Query: 184 GDKKLIVQRASV 195
+ V
Sbjct: 61 RSHEGETAYIRV 72
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 49.3 bits (117), Expect = 9e-09
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
RL+VG + + + F++ + +FA++++ S+D
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRF-----------GSIRTIDHVKGDSFAYIQYESLDAA 66
Query: 107 TQAM-AFDGINFKGQSLKIR 125
A G G ++R
Sbjct: 67 QAACAKMRGFPLGGPDRRLR 86
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.3 bits (117), Expect = 1e-08
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
L++ ++P + ++++ F + + + Q NL K F F+ + +
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGN-----VVSAKVFIDKQTNLSKCFGFVSYDNPVSA 73
Query: 107 TQAM-AFDGINFKGQSLKIRR 126
A+ + +G + LK++
Sbjct: 74 QAAIQSMNGFQIGMKRLKVQL 94
Score = 29.3 bits (65), Expect = 0.14
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
AI +NG Q+G K+L VQ
Sbjct: 74 QAAIQSMNGFQIGMKRLKVQLK 95
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 48.4 bits (115), Expect = 1e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
LYVG++ VTE + E F+ + + +A++ F+ + +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSI-----RVCRDMITRRSLGYAYVNFQQPADAER 57
Query: 109 AM-AFDGINFKGQSLKIR 125
A+ + KG+ ++I
Sbjct: 58 ALDTMNFDVIKGKPVRIM 75
Score = 27.2 bits (60), Expect = 0.58
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
++A+ +N + K + + +
Sbjct: 56 ERALDTMNFDVIKGKPVRIMWS 77
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 48.3 bits (114), Expect = 1e-08
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+ V N+P ++++ ++F + + +A + + FA +EF D
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPII-------HVDVADSLKKNFRFARIEFARYDGALA 55
Query: 109 AMAFDGINFKGQSLKIRR 126
A+ + +
Sbjct: 56 AITKTHKVVGQNEIIVSH 73
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.4 bits (115), Expect = 1e-08
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
++ L V +P+ TE ++ E+F+ + K F F+ F
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGE-----VLMVQVKKDLKTGHSKGFGFVRFTE 59
Query: 103 IDETTQAMAFDGINFKGQSLKIRRP 127
+ + M+ G+ + P
Sbjct: 60 YETQVKVMS-QRHMIDGRWCDCKLP 83
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 48.5 bits (115), Expect = 1e-08
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
L V +P +T+ E+ F ++ + + +AF++F S ++
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTC-----RIMRDYKTGYSYGYAFVDFTSEMDSQ 58
Query: 108 QAM-AFDGINFKGQSLKIRR 126
+A+ +GI + + LK+
Sbjct: 59 RAIKVLNGITVRNKRLKVSY 78
Score = 29.6 bits (66), Expect = 0.072
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRASVG 196
+AI LNG+ + +K+L V A G
Sbjct: 58 QRAIKVLNGITVRNKRLKVSYARPG 82
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 48.5 bits (115), Expect = 2e-08
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 48 RLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 107
RL++G IP +E++E + A ++ FAF+E+ S
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGV---LDVIVYASAADKMKNRGFAFVEYESHRAAA 59
Query: 108 QA---MAFDGINFKGQSLKIRR 126
A + I G + +
Sbjct: 60 MARRKLMPGRIQLWGHQIAVDW 81
Score = 24.7 bits (53), Expect = 4.7
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 159 KIFIGGLPNYLNEDQ 173
++FIGG+P ++
Sbjct: 3 RLFIGGIPKMKKREE 17
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 48.6 bits (115), Expect = 2e-08
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
+ L+V +I EDE+ E F + L + K +A +E+ +
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGE-----IKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 105 ETTQAM-AFDGINFKGQSLKIRR 126
+ A A +G GQ++++
Sbjct: 61 QALAAKEALNGAEIMGQTIQVDW 83
Score = 28.9 bits (64), Expect = 0.15
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
A LNG ++ + + V
Sbjct: 63 LAAKEALNGAEIMGQTIQVDWC 84
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 48.6 bits (115), Expect = 2e-08
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 104
+++VG +P+ T+ + ++F + Q + + F+
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGD-----IEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 105 ETTQAMAFDGINFKGQSLKIR------RPHDYQP 132
+A G+ + +P Q
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT 97
Score = 27.8 bits (61), Expect = 0.40
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 42/90 (46%)
Query: 156 SPHKIFIGGLPNYLNEDQ-----------------------------------------A 174
+ KIF+GGLP + + A
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 175 IAGLNGMQLGDKKLIVQRASVGAKNASGQQ 204
N + + +K V A +GAK S Q
Sbjct: 69 CKDPNPI-IDGRKANVNLAYLGAKPRSLQT 97
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 48.1 bits (114), Expect = 2e-08
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R+YVGN+P + ++ + F + + + FAF+EF
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR--------DIDLKNRRGGPPFAFVEFEDP 63
Query: 104 DETTQAM-AFDGINFKGQSLKIRRPHDYQPT 133
+ A+ DG ++ G L++ P + T
Sbjct: 64 RDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 94
Score = 31.2 bits (70), Expect = 0.025
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 38/85 (44%)
Query: 147 GVISTVVPDSPHKIFIGGLPNYLNEDQ--------------------------------- 173
GVI ++ +I++G LP +
Sbjct: 4 GVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDP 63
Query: 174 -----AIAGLNGMQLGDKKLIVQRA 193
A+ G +G +L V+
Sbjct: 64 RDAEDAVYGRDGYDYDGYRLRVEFP 88
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 48.3 bits (115), Expect = 2e-08
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 47 RRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
R+++GN+ V + ++ F++ G V ++ K FAF+++ +
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSK----------YGKIV---GCSVHKGFAFVQYVNERN 62
Query: 106 TTQAM-AFDGINFKGQSLKI---RRPHDYQPTPG 135
A+ DG GQ L I P + P
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGPS 96
Score = 31.4 bits (71), Expect = 0.025
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 35/84 (41%)
Query: 154 PDSPH-KIFIGGLPNYLNEDQ----------------------------------AIAGL 178
P S + ++FIG L + + A+AG
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE 70
Query: 179 NGMQLGDKKLIVQRASVGAKNASG 202
+G + + L + A+ N SG
Sbjct: 71 DGRMIAGQVLDINLAAEPKVNRSG 94
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 48.1 bits (114), Expect = 2e-08
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R LYVG + V + + F ++ L + + FAF+EF ++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITD-----IQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 107 TQAM-AFDGINFKGQSLKI-----RRPHD 129
A+ + G+++++ R +
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKE 89
Score = 29.2 bits (65), Expect = 0.11
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
AI +N +L + + V A
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 47.4 bits (112), Expect = 4e-08
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
L V + TE ++ E F++ A + V Q + FAF+ F ++D+
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGP-----IADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 107 TQAM-AFDGINFKGQSLKI 124
+A +G+ G+ +++
Sbjct: 65 KEAKERANGMELDGRRIRV 83
Score = 27.4 bits (60), Expect = 0.43
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
PD + + GL Y E
Sbjct: 6 PDPNCCLGVFGLSLYTTERD 25
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 47.5 bits (112), Expect = 5e-08
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLAC---QINLDKNFAFLEF 100
+YV + VT D++ +FF Q + + + + K A + +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 101 RSIDETTQAM-AFDGINFKGQSLKIRRPHDYQP 132
A+ FDG +F+G LK+ P
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 98
Score = 29.0 bits (64), Expect = 0.19
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
A+ +G KL V A
Sbjct: 72 KAAVEWFDGKDFQGSKLKVSLA 93
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 46.6 bits (110), Expect = 7e-08
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R+ LYV +T + F+ ++ ++ +N AF+ + +
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPF-----------GNIIDLSMDPPRNCAFVTYEKM 49
Query: 104 DETTQAM-AFDGINFKGQSLKI----RRP 127
+ QA+ +G + LK+ ++P
Sbjct: 50 ESADQAVAELNGTQVESVQLKVNIARKQP 78
Score = 26.9 bits (59), Expect = 0.58
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 172 DQAIAGLNGMQLGDKKLIVQRA 193
DQA+A LNG Q+ +L V A
Sbjct: 53 DQAVAELNGTQVESVQLKVNIA 74
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 47.2 bits (111), Expect = 1e-07
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R L V IP V E ++ + F + + V + + + F++F+S
Sbjct: 43 RNLMVNYIPTTVDEVQLRQLFERYGP-----IESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 107 TQAM-AFDGINFKGQSLKIRRPHDYQPTPG 135
QA+ +G N + LK+ PG
Sbjct: 98 QQAIAGLNGFNILNKRLKVALAASGHQRPG 127
Score = 32.6 bits (73), Expect = 0.016
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 41/93 (44%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ---------------------------------------- 173
PD + + +P ++E Q
Sbjct: 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQ 98
Query: 174 -AIAGLNGMQLGDKKLIVQRASVGAKNASGQQA 205
AIAGLNG + +K+L V A+ G + A
Sbjct: 99 QAIAGLNGFNILNKRLKVALAASGHQRPGIAGA 131
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.8 bits (108), Expect = 2e-07
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
++VG +TEDE+ EFF+Q G+ + + FAF+ F
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQY----------GDVMDVFIPKPFRAFAFVTFADDQIA 55
Query: 107 TQAMAFDGINFKGQSLKIRR 126
+ + KG S+ I
Sbjct: 56 QSLCG-EDLIIKGISVHISN 74
Score = 24.2 bits (52), Expect = 6.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
+F+G + ED+
Sbjct: 2 SSGSSGVFVGRCTGDMTEDE 21
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 46.2 bits (109), Expect = 2e-07
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--FAFLEFRSID 104
R+ V N+ + VT D + + F++ VL N A L++
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKF-----------GTVLKIITFTKNNQFQALLQYADPV 56
Query: 105 ETTQAM-AFDGINFKGQSLKIR 125
A + DG N +R
Sbjct: 57 SAQHAKLSLDGQNIYNACCTLR 78
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 45.2 bits (106), Expect = 3e-07
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+ + +++ N+ F E+ + E Q VL K AF +F +
Sbjct: 5 VTEGKTVFIRNLSFDSEEEALGEVLQQFGD-----LKYVRVVLHPDTEHSKGCAFAQFMT 59
Query: 103 IDETTQAMA-------FDGINFKGQSLKIRR 126
+ + +A G+ G+ LK+
Sbjct: 60 QEAAQKCLAAASLEAEGGGLKLDGRQLKVDL 90
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 45.1 bits (106), Expect = 3e-07
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+ +++ +P+ TE+++ FF+ + A +EF +
Sbjct: 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-------MRVHIEIGPDGRVTGEADVEFAT 64
Query: 103 IDETTQAMAFDGINFKGQSLKIRR 126
++ AMA D N + + +++
Sbjct: 65 HEDAVAAMAKDKANMQHRYVELFL 88
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.8 bits (105), Expect = 4e-07
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
+ LY+ N+ VTE +++ F + G + AF+ F + +
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGP-----PIQFRMMTGRMRGQAFITFPNKEIA 73
Query: 107 TQAM-AFDGINFKGQSLKIRR 126
QA+ +G G+ L I
Sbjct: 74 WQALHLVNGYKLYGKILVIEF 94
Score = 29.8 bits (66), Expect = 0.087
Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 42/82 (51%)
Query: 154 PDSP-HKIFIGGLPNYLNEDQ--------------------------------------- 173
P P +++ L + E
Sbjct: 14 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIA 73
Query: 174 --AIAGLNGMQLGDKKLIVQRA 193
A+ +NG +L K L+++
Sbjct: 74 WQALHLVNGYKLYGKILVIEFG 95
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 43.9 bits (103), Expect = 7e-07
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
+ V N+PF V+ DE+++FF + + + A + F S DE
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQV-----IPGSVCLKYNEKGMPTGEAMVAFESRDEA 64
Query: 107 TQAM-AFDGINFKGQSLKIR 125
T A+ + + +K+
Sbjct: 65 TAAVIDLNDRPIGSRKVKLV 84
Score = 26.9 bits (59), Expect = 0.61
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
P I + +P ++ D+
Sbjct: 6 KPGPTIIKVQNMPFTVSIDE 25
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 43.6 bits (102), Expect = 1e-06
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 22/100 (22%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
++V + V E +++E + + + K A +EF +ID
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKF-----------GTICYVMMMPFKRQALVEFENIDSA 64
Query: 107 TQAMAF---DGINFKGQSL--------KIRRPHDYQPTPG 135
+ + F + GQ +I RP + P+ G
Sbjct: 65 KECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 43.0 bits (101), Expect = 1e-06
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 50 YVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQA 109
V P +++F +L ++ N+ + ++S + +A
Sbjct: 8 TVFGFPQASASYILLQFAQYGN------------ILKHVMSNTGNWMHIRYQSKLQARKA 55
Query: 110 MAFDGINFKGQSL 122
++ DG F +
Sbjct: 56 LSKDGRIFGESIM 68
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 42.9 bits (100), Expect = 2e-06
Identities = 10/104 (9%), Positives = 23/104 (22%), Gaps = 8/104 (7%)
Query: 43 TRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 102
+ + L V + + L + Q + F +
Sbjct: 2 SSGSSGLIACVANDDVFSESET-----RAKFESLFRTYD-KDTTFQYFKSFKRVRINFSN 55
Query: 103 IDETTQAMAFDGINFKGQSLKIRRPHDYQPTPGVTDNAAVAVPA 146
A ++ K + + Q + + A P
Sbjct: 56 PLSAADAR--LRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPD 97
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 42.2 bits (98), Expect = 2e-06
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 49 LYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 108
+ + +P VT E+ + + + C ++ K AF+ + ++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY------------ELKYCFVDKYKGTAFVTLLNGEQAEA 48
Query: 109 AM-AFDGINFKGQSLKIR-RPHD 129
A+ F + + L ++ +P D
Sbjct: 49 AINTFHQSRLRERELSVQLQPTD 71
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.7 bits (97), Expect = 5e-06
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
L++ NIP V+E+++ F+ G D+ A ++ S++E
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNG---------GVVKGFKFFQKDRKMALIQMGSVEEA 61
Query: 107 TQAMAFDGINFKGQSLKIR 125
QA+ + G++ +R
Sbjct: 62 VQALIDLHNHDLGENHHLR 80
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 41.5 bits (96), Expect = 5e-06
Identities = 12/83 (14%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
L++GN+ + E+ ++ + V+ + ++ F +++F S
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKN------DLAVVDVRTGTNRKFGYVDFESA 64
Query: 104 DETTQAMAFDGINFKGQSLKIRR 126
++ +A+ G+ G +K+ +
Sbjct: 65 EDLEKALELTGLKVFGNEIKLEK 87
Score = 28.0 bits (61), Expect = 0.33
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 154 PDSPHKIFIGGLPNYLNEDQ 173
+P +FIG L + +
Sbjct: 10 STTPFNLFIGNLNPNKSVAE 29
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 40.9 bits (95), Expect = 6e-06
Identities = 12/84 (14%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
L++ N P T+ + + ++ + + + N + FA+++ S ++
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVAL-----SIRLPSLRFNTSRRFAYIDVTSKEDA 56
Query: 107 TQAM-AFDGINFKGQSLKIR--RP 127
+ +G+ +G +L + P
Sbjct: 57 RYCVEKLNGLKIEGYTLVTKVSNP 80
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.4 bits (96), Expect = 6e-06
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
R L++ +P VTE E++ V + KN AFLE + +
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPF-----------GKVTNILMLKGKNQAFLELATEEAA 57
Query: 107 TQAMAF---DGINFKGQSLKIR 125
+ + + + Q + I+
Sbjct: 58 ITMVNYYSAVTPHLRNQPIYIQ 79
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.3 bits (96), Expect = 7e-06
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+ + V N+P E+ + N K AF+ + ++
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKD----------YDLKYCYVDRN--KRTAFVTLLNGEQ 52
Query: 106 TTQAM-AFDGINFKGQSLKIR 125
A+ F +F+G+ L ++
Sbjct: 53 AQNAIQMFHQYSFRGKDLIVQ 73
Score = 30.9 bits (69), Expect = 0.030
Identities = 14/78 (17%), Positives = 16/78 (20%), Gaps = 34/78 (43%)
Query: 159 KIFIGGLPNYLNED----------------------------------QAIAGLNGMQLG 184
I + LP N AI +
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66
Query: 185 DKKLIVQRASVGAKNASG 202
K LIVQ A SG
Sbjct: 67 GKDLIVQLQPTDALLCSG 84
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 40.9 bits (95), Expect = 1e-05
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 47 RRLYVGNI-PFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
L V N+ P VT + F G+ + K A ++ ++
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVY----------GDVQRVKILFNKKENALVQMADGNQ 52
Query: 106 TTQAM-AFDGINFKGQSLKI 124
AM +G G+ ++I
Sbjct: 53 AQLAMSHLNGHKLHGKPIRI 72
Score = 27.4 bits (60), Expect = 0.70
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 165 LPNYLNEDQAIAGLNGMQLGDKKLIVQRA 193
+ + A++ LNG +L K + + +
Sbjct: 47 MADGNQAQLAMSHLNGHKLHGKPIRITLS 75
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 40.9 bits (95), Expect = 1e-05
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+ LY+ N+P + E E+ +L + F S
Sbjct: 16 QDPTNLYISNLPLSMDEQELENMLKPFGQ------VISTRILRDSSGTSRGVGFARMEST 69
Query: 104 DETTQAM-AFDGINFKGQSLKIR 125
++ + F+G K
Sbjct: 70 EKCEAVIGHFNGKFIKTPPGVSA 92
Score = 27.4 bits (60), Expect = 0.57
Identities = 8/79 (10%), Positives = 15/79 (18%), Gaps = 40/79 (50%)
Query: 155 DSPHKIFIGGLPNYLNEDQ----------------------------------------A 174
P ++I LP ++E +
Sbjct: 16 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAV 75
Query: 175 IAGLNGMQLGDKKLIVQRA 193
I NG + +
Sbjct: 76 IGHFNGKFIKTPPGVSAPT 94
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 40.6 bits (94), Expect = 1e-05
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 17/86 (19%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN------FAFLEF 100
++ NIPF +T+ ++++F L N A ++F
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIP-----------VDENAVHVLVDNNGQGLGQALVQF 57
Query: 101 RSIDETTQAMAFDGINFKGQSLKIRR 126
++ D+ ++ G+ +
Sbjct: 58 KNEDDARKSERLHRKKLNGREAFVHV 83
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 40.1 bits (93), Expect = 2e-05
Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 15/93 (16%)
Query: 43 TRQARRLYVGNIPFG-VTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 101
R +++ + G ++++ + G I N AF+E
Sbjct: 5 VETRRVVHIMDFQRGKNLRYQLLQLV----------EPFGVIS-NHLILNKINEAFIEMA 53
Query: 102 SIDETTQAMAF---DGINFKGQSLKIRRPHDYQ 131
+ ++ A+ + G+ +++ Y+
Sbjct: 54 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 86
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 39.9 bits (92), Expect = 3e-05
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 12/84 (14%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
R + N+P G E+ E F++ + + A +EF
Sbjct: 8 RSKTVILAKNLPAGTLAAEIQETFSRF-----------GSLGRVLLPEGGITAIVEFLEP 56
Query: 104 DETTQAM-AFDGINFKGQSLKIRR 126
E +A F L +
Sbjct: 57 LEARKAFRHLAYSKFHHVPLYLEW 80
Score = 32.2 bits (72), Expect = 0.015
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 150 STVVPDSPHKIFIGGLPNYLNEDQAIAGLNGMQLGDKKLIVQRASVGAKNASGQQAPVQI 209
V+ I L +A L + L ++ A +G A+ Q+ Q
Sbjct: 38 GRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQH 97
Query: 210 QVPGLTQVGQAGPAT 224
+ P + ++GP++
Sbjct: 98 EQP--AEKAESGPSS 110
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 37.9 bits (87), Expect = 2e-04
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 44 RQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSI 103
+Y+ +PF +++FF + + A P F+EFR+
Sbjct: 16 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA-----TGEGFVEFRNE 70
Query: 104 DETTQAMAFDGINFKGQSLKIRR 126
+ A+ + +++
Sbjct: 71 ADYKAALCRHKQYMGNRFIQVHP 93
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 37.1 bits (85), Expect = 2e-04
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
+ L++ N+P E + FNQ + + AF+EF + ++
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGF----------KEVRLVPNRHDIAFVEFTTELQS 58
Query: 107 TQAM-AFDGINF-KGQSLKI 124
A A G ++KI
Sbjct: 59 NAAKEALQGFKITPTHAMKI 78
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.4 bits (86), Expect = 2e-04
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 41 TITRQARRLYV--GNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 98
T++ + L V G + GV+ ++++ + V A + +K ++F
Sbjct: 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKC-----------GLVDALLMPPNKPYSFA 61
Query: 99 EFRSIDETTQAM-AFDG 114
+R+ +E+ +A +G
Sbjct: 62 RYRTTEESKRAYVTLNG 78
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 37.1 bits (85), Expect = 2e-04
Identities = 9/82 (10%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 45 QARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLD-KNFAFLEFRSI 103
Q ++V + + + E+++ + + N + + A++ +
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 66
Query: 104 DETTQAM-AFDGINFKGQSLKI 124
++ +A+ + + G++LK
Sbjct: 67 EDALRAIQCVNNVVVDGRTLKA 88
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 36.7 bits (84), Expect = 5e-04
Identities = 5/85 (5%), Positives = 22/85 (25%), Gaps = 13/85 (15%)
Query: 46 ARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 105
+ G++ +++ F+ + + F+ +
Sbjct: 11 CLLKFSGDLDDQTCREDLHILFSNH-----------GEIKWIDFVRGAKEGIILFKEKAK 59
Query: 106 TTQ--AMAFDGINFKGQSLKIRRPH 128
A + N + ++ ++
Sbjct: 60 EALGKAKDANNGNLQLRNKEVTWEV 84
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 34.0 bits (77), Expect = 0.003
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 47 RRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 106
+ + +PFG +++E+++FF+ G + AF++F S +
Sbjct: 16 GFVRLRGLPFGCSKEEIVQFFSGLEI-----VPNGMTLPVDFQGRSTGEAFVQFASQEIA 70
Query: 107 TQAMAFDGINFKGQSLKIRR 126
+A+ + ++I +
Sbjct: 71 EKALKKHKERIGHRYIEIFK 90
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 30.7 bits (69), Expect = 0.047
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 39 GSTITRQARRLYVGNIPFGVTEDEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKN--FA 96
G + R R + + N+ + ++ N+ + + + + A
Sbjct: 1 GPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVA 60
Query: 97 FLEFRSIDETTQAM-AFDGINFKGQSLKIR 125
+ FR +E + DG F G+ + +
Sbjct: 61 SVSFRDPEEADYCIQTLDGRWFGGRQITAQ 90
>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 156
Score = 25.0 bits (54), Expect = 6.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 170 NEDQAIAGLNGMQLGDKKLIVQRA 193
D+ A ++ M L + KL V +
Sbjct: 27 YHDRGWAKISNMTLSNGKLRVNQD 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 811,677
Number of extensions: 36503
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 159
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)