BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2206
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
LI +GIFSM+G IV LPE+ + N++ A + VD+AHS+G +G G G +FG++ +V
Sbjct: 176 LICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLND-DV 234
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414
D++MGT++KS S+GG+VAG ID+++ N+ ++ SM P L ++ II
Sbjct: 235 DLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEII 290
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAHS+G GP GRGV E G++ ++
Sbjct: 197 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEG-QI 255
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++KS G++GG+V + + +R + S+PP V TS+R +M
Sbjct: 256 DFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM 312
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAHS+G GP GRGV E G++ ++
Sbjct: 197 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEG-QI 255
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++KS G++GG+V + + +R + S+PP V TS+R +M
Sbjct: 256 DFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM 312
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAHS+G GP GRGV E G++ ++
Sbjct: 198 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEG-QI 256
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++KS G++GG+V + + +R + S+PP V TS+R +M
Sbjct: 257 DFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM 313
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 25/203 (12%)
Query: 226 KYTGTESTCLNLASYNYLG------FGENTGLCTERSKESVKQSGCALCSP-------SA 272
++ GT+ T L + ++ G G + ++ + G LC +A
Sbjct: 99 EFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNA 158
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
LEA L++A K R LI +G+FS DG I L I L +KY A + VD
Sbjct: 159 XGDLEAKLKEA-------DEKGARFKLIATDGVFSXDGIIADLKSICDLADKYNALVXVD 211
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSH 391
++H++G +G GRG EY G+ R VDIL GT K+ G+ GGY +G K I+++R S
Sbjct: 212 DSHAVGFIGENGRGTPEYCGVADR-VDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSR 270
Query: 392 VRSYATSMPPPVAMQILTSMRII 414
++ ++ P + + TS++++
Sbjct: 271 PYLFSNTVAPVI---VATSLKVL 290
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAHS+G GP GRGV E G++ ++
Sbjct: 197 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQI 255
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++ S G++GG+V + + +R + S+PP V TS+R +M
Sbjct: 256 DFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM 312
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAHS+G GP GRGV E G++ ++
Sbjct: 197 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEG-QI 255
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++ S G++GG+V + + +R + S+PP V TS+R +M
Sbjct: 256 DFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM 312
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAHS+G GP GRGV E G++ ++
Sbjct: 197 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQI 255
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++ S G++GG+V + + +R + S+PP V TS+R +M
Sbjct: 256 DFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM 312
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAHS+G GP GRGV E G++ ++
Sbjct: 198 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEG-QI 256
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++ S G++GG+V + + +R + S+PP V TS+R +M
Sbjct: 257 DFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM 313
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 12/148 (8%)
Query: 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335
LEA L++A G H +LI +G+FS DG I L + L +KY A + VD++H
Sbjct: 164 LEARLKEAREAGARH-------VLIATDGVFSXDGVIANLKGVCDLADKYDALVXVDDSH 216
Query: 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRS 394
++G +G GRG EY + R VDI+ GT K+ G+ GGY A K ++++R S
Sbjct: 217 AVGFVGENGRGSHEYCDVXGR-VDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYL 275
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDE 422
++ S+ P + + S++++ +E G E
Sbjct: 276 FSNSLAPAI---VAASIKVLEXVEAGSE 300
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
L+V+EG++SM G I L E+V + K+ A + VDEAH +G G GRGV E G++ +V
Sbjct: 177 LVVLEGVYSMMGDIAPLQEMVAVSKKHGAMILVDEAHGMGFFGEHGRGVFEEAGVEA-DV 235
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415
D ++GT++ S G++GG+ + + +R + S+PP V TS+R +M
Sbjct: 236 DFVVGTFSXSVGTVGGFCVSNHPKFEVLRLVCRPYVFTASLPPSVVATAATSIRKLM 292
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
LI E ++SMDG + EI + ++ A Y+DE H++G GP G GV E G+ R +
Sbjct: 181 LIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHR-I 239
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVA 404
DI GT K++G GGY+A S +D +R+ + ++TS+PP +A
Sbjct: 240 DIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIA 285
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
++V EG+FSMDG L EI ++ ++ +L VD+AH G +G GRG + P
Sbjct: 171 MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKP--- 227
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418
++L+ T+ K FG G V S + DY+ + Y+TSMPP A + S+ +I
Sbjct: 228 ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVI---- 283
Query: 419 NGDEGNVRHSSI 430
DEG+ R +
Sbjct: 284 RSDEGDARREKL 295
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
++V EG+FSMDG L EI ++ ++ +L VD+AH G +G GRG + P
Sbjct: 171 MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKP--- 227
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418
++L+ T+ K FG G V S + DY+ + Y+TSMPP A + S+ +I
Sbjct: 228 ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVI---- 283
Query: 419 NGDEGNVRHSSI 430
DEG+ R +
Sbjct: 284 RSDEGDARREKL 295
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
LI E ++SMDG + EI + ++ A Y+DE H++G GP G GV E G+ R +
Sbjct: 181 LIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHR-I 239
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVA 404
DI GT ++G GGY+A S +D +R+ + ++TS+PP +A
Sbjct: 240 DIFNGTLAXAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIA 285
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPR 356
K I EG+FS GSI +L ++ ++ + L VDEAHS G LG GRG F I +
Sbjct: 177 KSFITTEGVFSTSGSITQLDKLAKITPEK---LIVDEAHSFGVLGKNGRGAINSFRISYK 233
Query: 357 EVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416
I + K+FG +G V +++ +Y+ + Y T++PP + L ++
Sbjct: 234 NCLICVFPLGKAFGGVGAVVCTTEAIAEYLIQFARNYIYTTALPPMILKAALIQLK---N 290
Query: 417 LENGDEGNVR 426
LEN ++ R
Sbjct: 291 LENVNDNRAR 300
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 35/160 (21%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
+IVV+ I+S G+I L E+V + ++ L VDE+HS+G GP G G+ G+ REV
Sbjct: 169 IIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREV 227
Query: 359 DILMGTYTKSFGSMGGYV----------------------------AGSKSTIDYIRANS 390
+ + K+F G + AG ++T++ I +
Sbjct: 228 HFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESAD 287
Query: 391 HVRSYATSMPPPVAMQI------LTSMRIIMGLENGDEGN 424
+ R + M + + + + S I+GLE GDE N
Sbjct: 288 NRRQHLDRMARKLRIGLSQLGLTIRSESQIIGLETGDERN 327
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 35/160 (21%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
+IVV+ I+S G+I L E+V + ++ L VDE+HS+G GP G G+ G+ REV
Sbjct: 169 IIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREV 227
Query: 359 DILMGTYTKSFGSMGGYV----------------------------AGSKSTIDYIRANS 390
+ + K+F G + AG ++T++ I +
Sbjct: 228 HFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESAD 287
Query: 391 HVRSYATSMPPPVAMQI------LTSMRIIMGLENGDEGN 424
+ R + M + + + + S I+GLE GDE N
Sbjct: 288 NRRQHLDRMARKLRIGLSQLGLTIRSESQIIGLETGDERN 327
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 35/160 (21%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
+IVV+ I+S G+I L E+V + ++ L VDE+HS+G GP G G+ G+ REV
Sbjct: 189 IIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREV 247
Query: 359 DILMGTYTKSFGSMGGYV----------------------------AGSKSTIDYIRANS 390
+ + K+F G + AG ++T++ I +
Sbjct: 248 HFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESAD 307
Query: 391 HVRSYATSMPPPVAMQI------LTSMRIIMGLENGDEGN 424
+ R + M + + + + S I+GLE GDE N
Sbjct: 308 NRRQHLDRMARKLRIGLSQLGLTIRSESQIIGLETGDERN 347
>pdb|2A61|A Chain A, The Crystal Structure Of Transcriptional Regulator Tm0710
From Thermotoga Maritima
pdb|2A61|B Chain B, The Crystal Structure Of Transcriptional Regulator Tm0710
From Thermotoga Maritima
pdb|2A61|C Chain C, The Crystal Structure Of Transcriptional Regulator Tm0710
From Thermotoga Maritima
pdb|2A61|D Chain D, The Crystal Structure Of Transcriptional Regulator Tm0710
From Thermotoga Maritima
Length = 145
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 344 GRGVTEYFGIDPREVDILMGTY---TKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMP 400
GR V FGI P + DIL Y K G + + +KST+ + Y T P
Sbjct: 22 GRKVLRDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81
Query: 401 PP 402
P
Sbjct: 82 DP 83
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFGSMGG 374
PEI R+ +KY L DE I G TG T+ GI P + I G + + +GG
Sbjct: 247 PEIQRICDKYDILLIADEV--ICGFGRTGNWFGTQTMGIRPHIMTIAKG-LSSGYAPIGG 303
Query: 375 YVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414
+ I + Y S P A L ++RI+
Sbjct: 304 SIV-CDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRIL 342
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 258 ESVKQSGCALCSPSAPSSLEAGLQKALLEGQPHSGK 293
E + QS L SP A A +Q+AL GQP SG+
Sbjct: 150 ELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGR 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,234,175
Number of Sequences: 62578
Number of extensions: 561895
Number of successful extensions: 907
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 25
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)