Query psy2206
Match_columns 430
No_of_seqs 419 out of 3349
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:55:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1357|consensus 100.0 2.3E-68 5E-73 535.3 22.1 320 30-430 73-410 (519)
2 PLN02483 serine palmitoyltrans 100.0 4.5E-56 9.8E-61 469.1 19.4 279 140-419 9-363 (489)
3 COG0156 BioF 7-keto-8-aminopel 100.0 5.6E-45 1.2E-49 371.8 20.8 218 179-428 7-300 (388)
4 PLN02955 8-amino-7-oxononanoat 100.0 5.4E-38 1.2E-42 327.3 19.5 263 91-417 98-369 (476)
5 KOG1359|consensus 100.0 3.3E-38 7E-43 303.7 14.9 192 201-417 50-314 (417)
6 KOG1360|consensus 100.0 1.1E-36 2.5E-41 302.5 14.1 179 232-421 171-427 (570)
7 KOG1358|consensus 100.0 8.9E-33 1.9E-37 274.6 13.0 273 66-418 81-355 (467)
8 PLN02822 serine palmitoyltrans 100.0 1.5E-31 3.3E-36 282.1 20.2 195 202-416 95-365 (481)
9 TIGR01821 5aminolev_synth 5-am 100.0 6.7E-31 1.4E-35 270.1 21.6 207 180-417 8-297 (402)
10 PLN03227 serine palmitoyltrans 100.0 1.2E-30 2.6E-35 268.6 17.7 257 98-416 1-259 (392)
11 PRK09064 5-aminolevulinate syn 100.0 6.3E-30 1.4E-34 263.1 20.5 212 181-417 9-298 (407)
12 PRK13393 5-aminolevulinate syn 100.0 6.9E-30 1.5E-34 263.3 20.8 211 181-417 9-297 (406)
13 KOG1357|consensus 100.0 1.2E-30 2.6E-35 263.3 5.6 190 141-346 43-242 (519)
14 PRK13392 5-aminolevulinate syn 100.0 1E-27 2.2E-32 247.3 19.8 221 180-417 9-298 (410)
15 PLN02483 serine palmitoyltrans 100.0 1.5E-28 3.3E-33 259.9 9.4 107 34-140 39-145 (489)
16 TIGR01822 2am3keto_CoA 2-amino 99.9 8.7E-26 1.9E-30 230.6 21.3 209 179-416 5-290 (393)
17 PRK05937 8-amino-7-oxononanoat 99.9 7.9E-25 1.7E-29 223.2 19.7 176 232-417 4-262 (370)
18 PRK07179 hypothetical protein; 99.9 2.4E-24 5.3E-29 222.0 18.6 172 232-417 54-301 (407)
19 PRK07505 hypothetical protein; 99.9 4.8E-24 1E-28 219.6 19.4 223 187-418 7-303 (402)
20 TIGR01825 gly_Cac_T_rel pyrido 99.9 3.3E-22 7.1E-27 203.5 21.0 204 181-416 3-282 (385)
21 PRK05958 8-amino-7-oxononanoat 99.9 3.6E-22 7.7E-27 202.3 21.1 205 181-417 9-289 (385)
22 TIGR00858 bioF 8-amino-7-oxono 99.9 3.4E-22 7.4E-27 200.1 19.8 190 201-416 1-266 (360)
23 PRK06939 2-amino-3-ketobutyrat 99.9 8.1E-21 1.8E-25 193.4 20.5 211 177-416 7-294 (397)
24 cd06454 KBL_like KBL_like; thi 99.9 7.2E-21 1.6E-25 190.3 18.8 175 232-416 1-251 (349)
25 TIGR03246 arg_catab_astC succi 99.8 5.3E-20 1.1E-24 189.7 15.6 203 199-427 17-308 (397)
26 TIGR03576 pyridox_MJ0158 pyrid 99.8 2.6E-20 5.7E-25 189.1 12.0 110 297-414 137-250 (346)
27 PLN02760 4-aminobutyrate:pyruv 99.8 1.4E-19 2.9E-24 192.3 17.6 126 296-428 260-398 (504)
28 COG0160 GabT 4-aminobutyrate a 99.8 4.1E-19 8.8E-24 184.2 18.7 117 294-420 220-343 (447)
29 PRK00615 glutamate-1-semialdeh 99.8 3E-19 6.5E-24 186.5 16.9 125 296-428 201-333 (433)
30 PRK03715 argD acetylornithine 99.8 3.1E-19 6.8E-24 184.2 15.3 200 200-426 19-306 (395)
31 PRK08117 4-aminobutyrate amino 99.8 5.5E-19 1.2E-23 184.2 17.2 119 296-423 207-332 (433)
32 PRK12403 putative aminotransfe 99.8 9.5E-19 2.1E-23 184.1 17.8 121 296-423 222-352 (460)
33 PRK11522 putrescine--2-oxoglut 99.8 1.5E-18 3.3E-23 182.4 18.2 125 296-427 231-363 (459)
34 PRK06082 4-aminobutyrate amino 99.8 2.2E-18 4.7E-23 181.3 18.5 206 199-428 54-359 (459)
35 PRK12381 bifunctional succinyl 99.8 9.5E-19 2.1E-23 180.9 14.8 203 199-427 21-312 (406)
36 COG0001 HemL Glutamate-1-semia 99.8 2.5E-18 5.5E-23 176.0 17.6 198 200-430 36-335 (432)
37 TIGR01885 Orn_aminotrans ornit 99.8 3E-18 6.4E-23 176.6 18.2 114 296-418 186-307 (401)
38 TIGR03372 putres_am_tran putre 99.8 4.1E-18 8.9E-23 178.3 18.0 123 296-425 224-354 (442)
39 PRK06062 hypothetical protein; 99.8 5.3E-18 1.1E-22 178.0 18.2 119 296-421 214-340 (451)
40 PRK03244 argD acetylornithine 99.8 3.4E-18 7.5E-23 175.5 16.2 197 200-422 26-307 (398)
41 PRK00062 glutamate-1-semialdeh 99.8 3.4E-18 7.4E-23 178.0 15.9 124 296-426 197-327 (426)
42 PRK02936 argD acetylornithine 99.8 4.2E-18 9.1E-23 173.5 16.2 203 199-427 11-296 (377)
43 PRK06105 aminotransferase; Pro 99.8 6E-18 1.3E-22 178.0 17.8 125 296-427 218-355 (460)
44 COG4992 ArgD Ornithine/acetylo 99.8 4.4E-18 9.4E-23 172.8 15.7 122 296-426 184-312 (404)
45 PRK05093 argD bifunctional N-s 99.8 5.4E-18 1.2E-22 174.8 16.4 204 198-427 21-313 (403)
46 PLN02482 glutamate-1-semialdeh 99.8 8E-18 1.7E-22 177.5 17.9 126 296-429 246-379 (474)
47 cd00610 OAT_like Acetyl ornith 99.8 1E-17 2.2E-22 171.9 16.5 123 296-425 191-320 (413)
48 PRK01278 argD acetylornithine 99.8 9.9E-18 2.1E-22 171.8 15.8 193 200-418 14-295 (389)
49 PRK13360 omega amino acid--pyr 99.8 1.9E-17 4E-22 173.5 18.0 124 296-426 215-351 (442)
50 PRK07986 adenosylmethionine--8 99.8 1.3E-17 2.7E-22 174.1 16.7 125 296-427 204-340 (428)
51 PRK12389 glutamate-1-semialdeh 99.8 1.8E-17 4E-22 172.8 17.5 125 296-428 200-332 (428)
52 PRK06209 glutamate-1-semialdeh 99.8 1.5E-17 3.3E-22 173.6 16.8 125 296-427 187-319 (431)
53 PRK06541 hypothetical protein; 99.7 3.6E-17 7.8E-22 172.1 18.6 127 295-428 220-356 (460)
54 TIGR00508 bioA adenosylmethion 99.7 2.5E-17 5.4E-22 171.8 17.0 125 296-427 207-343 (427)
55 PLN02624 ornithine-delta-amino 99.7 9.1E-17 2E-21 169.7 20.7 114 296-418 224-345 (474)
56 PRK08593 4-aminobutyrate amino 99.7 3.8E-17 8.2E-22 171.3 17.6 123 295-426 206-335 (445)
57 PRK09221 beta alanine--pyruvat 99.7 5.7E-17 1.2E-21 170.0 17.3 123 296-425 218-353 (445)
58 PRK00854 rocD ornithine--oxo-a 99.7 6.6E-17 1.4E-21 166.2 16.9 203 199-426 23-316 (401)
59 PRK04073 rocD ornithine--oxo-a 99.7 9.5E-17 2.1E-21 165.3 18.0 114 296-418 186-307 (396)
60 PRK06173 adenosylmethionine--8 99.7 1.3E-16 2.8E-21 166.5 16.9 125 296-427 206-342 (429)
61 PRK05630 adenosylmethionine--8 99.7 1.6E-16 3.4E-21 165.6 17.1 125 296-427 200-337 (422)
62 PTZ00125 ornithine aminotransf 99.7 2.2E-16 4.8E-21 162.0 16.6 114 296-418 178-299 (400)
63 PRK07046 aminotransferase; Val 99.7 2.6E-16 5.6E-21 165.3 17.2 126 296-429 218-356 (453)
64 PRK06149 hypothetical protein; 99.7 2.4E-16 5.2E-21 179.2 18.3 121 296-424 744-872 (972)
65 TIGR00713 hemL glutamate-1-sem 99.7 2.4E-16 5.2E-21 163.5 16.8 122 296-425 195-324 (423)
66 PRK07678 aminotransferase; Val 99.7 2.9E-16 6.2E-21 164.9 17.5 124 296-426 213-348 (451)
67 PRK04260 acetylornithine amino 99.7 1.9E-16 4.1E-21 161.6 15.7 203 200-427 12-294 (375)
68 PRK07480 putative aminotransfe 99.7 3.8E-16 8.2E-21 164.2 17.6 121 296-423 219-349 (456)
69 PRK07482 hypothetical protein; 99.7 5.6E-16 1.2E-20 163.1 18.6 126 296-428 220-358 (461)
70 PRK06943 adenosylmethionine--8 99.7 5.4E-16 1.2E-20 162.9 17.4 126 296-428 221-359 (453)
71 PRK05965 hypothetical protein; 99.7 5.1E-16 1.1E-20 163.4 17.2 125 296-427 215-352 (459)
72 PRK05639 4-aminobutyrate amino 99.7 5.8E-16 1.3E-20 162.9 17.4 122 295-426 221-349 (457)
73 PRK06777 4-aminobutyrate amino 99.7 6.8E-16 1.5E-20 160.7 17.0 125 295-428 197-328 (421)
74 PRK05769 4-aminobutyrate amino 99.7 5.9E-16 1.3E-20 162.1 16.3 123 295-428 220-349 (441)
75 PRK07036 hypothetical protein; 99.7 1.2E-15 2.6E-20 160.9 18.5 127 295-428 219-359 (466)
76 PRK09264 diaminobutyrate--2-ox 99.7 9.6E-16 2.1E-20 159.7 17.5 113 296-418 198-319 (425)
77 PRK07483 hypothetical protein; 99.7 1E-15 2.2E-20 160.4 17.5 125 296-427 199-334 (443)
78 PRK05964 adenosylmethionine--8 99.7 1.1E-15 2.5E-20 158.9 17.7 125 296-427 199-336 (423)
79 PRK06917 hypothetical protein; 99.7 1.5E-15 3.2E-20 159.4 18.1 126 296-428 199-335 (447)
80 PRK06058 4-aminobutyrate amino 99.7 9.1E-16 2E-20 160.7 15.8 122 296-426 219-347 (443)
81 PF00202 Aminotran_3: Aminotra 99.7 4.3E-16 9.3E-21 157.8 12.7 124 296-428 177-307 (339)
82 PRK07495 4-aminobutyrate amino 99.7 1.5E-15 3.3E-20 158.4 17.0 120 295-423 197-323 (425)
83 PRK08360 4-aminobutyrate amino 99.7 2.7E-15 5.8E-20 157.3 18.2 124 295-427 203-333 (443)
84 PRK07030 adenosylmethionine--8 99.7 2.2E-15 4.8E-20 158.9 17.7 126 296-428 214-353 (466)
85 COG0161 BioA Adenosylmethionin 99.7 1.6E-15 3.4E-20 157.1 16.0 125 294-425 212-348 (449)
86 PLN03226 serine hydroxymethylt 99.7 1.4E-15 3E-20 160.6 15.6 126 273-418 172-311 (475)
87 PRK07481 hypothetical protein; 99.7 2.7E-15 5.9E-20 157.5 17.5 127 295-428 212-351 (449)
88 TIGR00707 argD acetylornithine 99.7 2.9E-15 6.3E-20 152.2 16.9 193 198-417 8-289 (379)
89 PRK06148 hypothetical protein; 99.6 2.9E-15 6.2E-20 170.9 18.4 125 296-428 784-916 (1013)
90 PRK06916 adenosylmethionine--8 99.6 3.2E-15 7E-20 157.4 17.4 126 295-427 222-361 (460)
91 PRK04612 argD acetylornithine 99.6 3.2E-15 7E-20 155.1 16.7 123 296-427 187-316 (408)
92 TIGR02539 SepCysS Sep-tRNA:Cys 99.6 6.3E-15 1.4E-19 150.4 17.9 108 273-395 129-238 (370)
93 TIGR00700 GABAtrnsam 4-aminobu 99.6 5.4E-15 1.2E-19 153.8 17.1 120 295-423 196-322 (420)
94 PRK08742 adenosylmethionine--8 99.6 6.7E-15 1.4E-19 155.4 17.8 126 295-427 235-373 (472)
95 PRK02627 acetylornithine amino 99.6 6.4E-15 1.4E-19 150.7 16.1 119 296-424 182-308 (396)
96 PRK09792 4-aminobutyrate trans 99.6 7.7E-15 1.7E-19 152.8 16.9 121 296-425 198-325 (421)
97 PRK04013 argD acetylornithine/ 99.6 9E-15 2E-19 149.7 16.4 117 296-426 162-285 (364)
98 PRK06938 diaminobutyrate--2-ox 99.6 1.4E-14 3E-19 152.7 18.2 123 296-428 231-360 (464)
99 TIGR02407 ectoine_ectB diamino 99.6 1.4E-14 3.1E-19 150.4 17.3 112 296-417 194-314 (412)
100 PLN00144 acetylornithine trans 99.6 8.2E-15 1.8E-19 150.7 14.7 121 296-425 167-294 (382)
101 PRK06931 diaminobutyrate--2-ox 99.6 1.7E-14 3.7E-19 151.9 16.7 123 296-428 225-354 (459)
102 TIGR00709 dat 2,4-diaminobutyr 99.6 3.4E-14 7.3E-19 148.9 17.9 121 296-426 206-333 (442)
103 PRK08088 4-aminobutyrate amino 99.6 3.7E-14 8E-19 147.7 17.2 123 295-426 198-327 (425)
104 KOG1402|consensus 99.6 8.7E-15 1.9E-19 144.1 10.9 198 183-420 29-330 (427)
105 PRK13034 serine hydroxymethylt 99.6 5.3E-14 1.1E-18 146.4 15.2 109 297-414 169-280 (416)
106 PRK13580 serine hydroxymethylt 99.5 3.3E-14 7.1E-19 149.5 12.2 126 273-417 209-335 (493)
107 PRK06918 4-aminobutyrate amino 99.5 2.7E-13 5.9E-18 142.4 19.1 120 295-423 218-344 (451)
108 KOG1404|consensus 99.5 9.6E-14 2.1E-18 139.4 12.4 118 295-420 211-335 (442)
109 TIGR00699 GABAtrns_euk 4-amino 99.5 1.3E-13 2.9E-18 145.1 11.3 133 274-426 239-377 (464)
110 KOG1401|consensus 99.5 4.3E-13 9.3E-18 135.6 13.9 122 296-424 206-335 (433)
111 PRK08297 L-lysine aminotransfe 99.5 2E-13 4.4E-18 143.1 12.0 124 295-427 224-355 (443)
112 PF00155 Aminotran_1_2: Aminot 99.4 3.9E-13 8.5E-18 135.5 11.0 95 297-392 149-249 (363)
113 TIGR03251 LAT_fam L-lysine 6-t 99.4 6.7E-13 1.4E-17 138.8 12.0 126 295-428 217-349 (431)
114 PLN02974 adenosylmethionine-8- 99.3 6.1E-12 1.3E-16 140.2 13.3 135 274-420 567-714 (817)
115 TIGR01324 cysta_beta_ly_B cyst 99.3 3.5E-12 7.6E-17 131.2 10.1 107 296-414 135-245 (377)
116 cd00614 CGS_like CGS_like: Cys 99.3 2.2E-12 4.8E-17 131.9 7.7 107 296-414 125-236 (369)
117 KOG0257|consensus 99.3 3.8E-12 8.2E-17 129.2 9.1 119 273-407 162-287 (420)
118 TIGR01328 met_gam_lyase methio 99.3 5.5E-12 1.2E-16 130.3 9.5 109 296-414 144-256 (391)
119 PRK06234 methionine gamma-lyas 99.3 7E-12 1.5E-16 129.8 10.0 119 273-414 139-263 (400)
120 PRK09331 Sep-tRNA:Cys-tRNA syn 99.3 1.8E-11 3.8E-16 125.9 11.6 128 273-415 141-276 (387)
121 COG0436 Aspartate/tyrosine/aro 99.3 1.2E-11 2.6E-16 127.9 10.0 113 296-412 163-283 (393)
122 PRK00950 histidinol-phosphate 99.3 3.2E-11 7E-16 121.9 12.8 105 297-411 159-266 (361)
123 PRK02731 histidinol-phosphate 99.3 5.2E-11 1.1E-15 120.8 13.4 110 296-411 154-268 (367)
124 COG0156 BioF 7-keto-8-aminopel 99.2 9.2E-12 2E-16 128.1 6.7 77 47-140 4-83 (388)
125 cd06452 SepCysS Sep-tRNA:Cys-t 99.2 5.1E-11 1.1E-15 120.9 11.6 86 296-390 139-226 (361)
126 PRK03158 histidinol-phosphate 99.2 6.5E-11 1.4E-15 119.9 12.2 110 296-411 151-265 (359)
127 PLN02242 methionine gamma-lyas 99.2 2E-11 4.4E-16 127.2 8.7 105 297-412 164-274 (418)
128 PRK08574 cystathionine gamma-s 99.2 2.1E-11 4.5E-16 125.8 8.5 118 273-414 126-248 (385)
129 TIGR01976 am_tr_V_VC1184 cyste 99.2 3.8E-11 8.2E-16 122.9 10.2 123 273-417 146-276 (397)
130 PRK06460 hypothetical protein; 99.2 5.3E-11 1.2E-15 122.3 10.7 107 296-414 130-240 (376)
131 PRK06767 methionine gamma-lyas 99.2 3.9E-11 8.5E-16 123.6 9.0 108 296-414 146-257 (386)
132 PRK07503 methionine gamma-lyas 99.2 5.1E-11 1.1E-15 123.6 9.9 134 258-414 123-262 (403)
133 PRK08249 cystathionine gamma-s 99.2 5.5E-11 1.2E-15 123.2 9.7 107 296-414 149-259 (398)
134 PLN00175 aminotransferase fami 99.2 1.1E-10 2.4E-15 121.2 11.3 111 297-411 188-304 (413)
135 PRK03317 histidinol-phosphate 99.2 1.1E-10 2.3E-15 118.9 10.7 121 273-413 149-273 (368)
136 TIGR01325 O_suc_HS_sulf O-succ 99.2 6.5E-11 1.4E-15 121.8 9.1 135 256-415 110-250 (380)
137 cd00378 SHMT Serine-glycine hy 99.2 2.8E-10 6.1E-15 116.8 13.7 107 298-414 163-272 (402)
138 PRK08133 O-succinylhomoserine 99.2 9.4E-11 2E-15 121.1 10.1 136 254-414 115-256 (390)
139 KOG1359|consensus 99.2 9.6E-12 2.1E-16 121.2 2.5 87 64-165 50-149 (417)
140 PRK07810 O-succinylhomoserine 99.2 7.9E-11 1.7E-15 122.2 9.1 136 254-414 124-266 (403)
141 PRK09082 methionine aminotrans 99.2 8.5E-11 1.8E-15 120.6 9.2 92 297-390 164-262 (386)
142 PRK07682 hypothetical protein; 99.1 1.5E-10 3.2E-15 118.2 10.1 111 297-411 155-271 (378)
143 PRK06290 aspartate aminotransf 99.1 2.4E-10 5.2E-15 118.7 11.8 92 297-390 180-277 (410)
144 PRK07504 O-succinylhomoserine 99.1 1.1E-10 2.4E-15 120.9 8.5 108 296-415 150-262 (398)
145 PRK07324 transaminase; Validat 99.1 1.8E-10 4E-15 117.8 9.8 108 297-411 154-267 (373)
146 TIGR03537 DapC succinyldiamino 99.1 3.9E-10 8.5E-15 114.1 11.9 120 273-411 126-251 (350)
147 TIGR01141 hisC histidinol-phos 99.1 6E-10 1.3E-14 112.0 13.1 108 296-412 142-254 (346)
148 PRK08068 transaminase; Reviewe 99.1 3E-10 6.6E-15 116.5 10.9 94 297-392 168-268 (389)
149 PRK06108 aspartate aminotransf 99.1 3.3E-10 7.1E-15 115.3 10.9 113 297-412 159-278 (382)
150 TIGR03301 PhnW-AepZ 2-aminoeth 99.1 7.2E-10 1.6E-14 111.0 13.1 131 273-423 113-260 (355)
151 PRK08912 hypothetical protein; 99.1 3.1E-10 6.8E-15 116.2 10.5 92 297-390 160-258 (387)
152 PRK09276 LL-diaminopimelate am 99.1 3.8E-10 8.3E-15 115.4 11.1 92 297-390 167-265 (385)
153 TIGR03540 DapC_direct LL-diami 99.1 3.3E-10 7.1E-15 115.8 10.6 92 297-390 165-263 (383)
154 TIGR03235 DNA_S_dndA cysteine 99.1 1.7E-10 3.8E-15 116.5 8.3 122 296-428 138-267 (353)
155 TIGR01979 sufS cysteine desulf 99.1 4E-10 8.7E-15 115.7 11.1 123 273-417 149-291 (403)
156 cd00609 AAT_like Aspartate ami 99.1 4E-10 8.6E-15 111.6 10.6 115 296-414 132-253 (350)
157 PRK06348 aspartate aminotransf 99.1 4.2E-10 9.1E-15 115.4 11.0 110 298-411 164-279 (384)
158 PTZ00094 serine hydroxymethylt 99.1 5.5E-10 1.2E-14 117.4 12.1 125 273-417 171-299 (452)
159 PRK05764 aspartate aminotransf 99.1 4.5E-10 9.9E-15 114.9 11.1 113 297-412 165-284 (393)
160 TIGR02326 transamin_PhnW 2-ami 99.1 8.2E-10 1.8E-14 112.0 12.6 134 273-428 117-270 (363)
161 PLN02509 cystathionine beta-ly 99.1 3.5E-10 7.5E-15 119.4 9.9 107 296-414 217-328 (464)
162 PRK00011 glyA serine hydroxyme 99.1 1E-09 2.2E-14 113.5 13.1 121 273-414 154-277 (416)
163 PRK05942 aspartate aminotransf 99.1 6.1E-10 1.3E-14 114.5 11.2 92 297-390 171-269 (394)
164 PRK07777 aminotransferase; Val 99.1 6.4E-10 1.4E-14 113.9 10.8 92 297-390 160-258 (387)
165 PRK08361 aspartate aminotransf 99.1 4.6E-10 1E-14 115.2 9.6 101 273-389 156-262 (391)
166 PRK06207 aspartate aminotransf 99.1 1.2E-09 2.5E-14 113.2 12.4 103 273-390 168-277 (405)
167 PRK10874 cysteine sulfinate de 99.1 7.2E-10 1.6E-14 114.0 10.6 123 273-417 150-292 (401)
168 PRK08175 aminotransferase; Val 99.1 9.9E-10 2.1E-14 113.0 11.6 106 273-390 151-263 (395)
169 PRK09147 succinyldiaminopimela 99.1 1.5E-09 3.3E-14 111.6 12.9 113 297-411 167-290 (396)
170 PRK07811 cystathionine gamma-s 99.0 5.4E-10 1.2E-14 115.3 9.5 107 296-414 146-257 (388)
171 cd06502 TA_like Low-specificit 99.0 1.9E-10 4.2E-15 114.7 5.8 130 273-412 110-242 (338)
172 PRK09028 cystathionine beta-ly 99.0 3.9E-10 8.4E-15 116.8 8.2 107 296-414 146-256 (394)
173 PRK05957 aspartate aminotransf 99.0 1E-09 2.2E-14 112.8 11.1 104 273-390 150-259 (389)
174 cd06451 AGAT_like Alanine-glyo 99.0 1.7E-09 3.7E-14 109.0 12.6 124 273-417 113-255 (356)
175 PRK07681 aspartate aminotransf 99.0 1.2E-09 2.7E-14 112.4 11.8 92 297-390 167-265 (399)
176 PRK07049 methionine gamma-lyas 99.0 9.2E-10 2E-14 115.1 10.9 122 273-414 159-290 (427)
177 PRK13479 2-aminoethylphosphona 99.0 2.2E-09 4.9E-14 108.9 13.4 134 273-426 119-269 (368)
178 PRK09295 bifunctional cysteine 99.0 9.6E-10 2.1E-14 113.5 10.8 132 273-427 154-306 (406)
179 PRK08960 hypothetical protein; 99.0 1.2E-09 2.5E-14 112.1 11.2 108 297-411 166-279 (387)
180 PRK09148 aminotransferase; Val 99.0 1.1E-09 2.4E-14 113.3 11.1 93 296-390 165-264 (405)
181 PRK08861 cystathionine gamma-s 99.0 6.8E-10 1.5E-14 114.8 9.1 107 296-414 138-249 (388)
182 PRK03321 putative aminotransfe 99.0 8E-10 1.7E-14 111.6 9.3 110 297-412 146-260 (352)
183 PLN02855 Bifunctional selenocy 99.0 1E-09 2.3E-14 113.9 10.3 131 273-427 163-314 (424)
184 PRK07366 succinyldiaminopimela 99.0 1.4E-09 3.1E-14 111.4 10.9 93 297-390 166-265 (388)
185 TIGR03392 FeS_syn_CsdA cystein 99.0 1.2E-09 2.5E-14 112.3 10.3 123 273-417 147-289 (398)
186 TIGR01814 kynureninase kynuren 99.0 2.5E-09 5.3E-14 110.6 12.6 135 273-427 158-314 (406)
187 PRK08247 cystathionine gamma-s 99.0 7.7E-10 1.7E-14 113.2 8.6 107 296-414 136-247 (366)
188 PRK07683 aminotransferase A; V 99.0 1.5E-09 3.3E-14 111.4 10.8 91 297-389 162-258 (387)
189 PRK12414 putative aminotransfe 99.0 1.4E-09 3E-14 111.6 10.4 92 297-390 163-261 (384)
190 PRK02948 cysteine desulfurase; 99.0 1.1E-09 2.5E-14 111.6 9.7 120 273-415 128-252 (381)
191 cd00615 Orn_deC_like Ornithine 99.0 6.8E-10 1.5E-14 110.0 7.8 125 273-415 142-271 (294)
192 TIGR02080 O_succ_thio_ly O-suc 99.0 1.1E-09 2.4E-14 112.9 9.6 107 296-414 136-247 (382)
193 cd06453 SufS_like Cysteine des 99.0 1.8E-09 3.9E-14 109.5 11.1 94 273-388 129-223 (373)
194 PRK07269 cystathionine gamma-s 99.0 8.2E-10 1.8E-14 113.2 8.6 117 273-414 126-247 (364)
195 PRK08114 cystathionine beta-ly 99.0 1.1E-09 2.4E-14 113.4 9.4 137 253-414 115-259 (395)
196 TIGR03538 DapC_gpp succinyldia 99.0 2.5E-09 5.5E-14 109.9 11.9 113 297-411 166-289 (393)
197 PRK07309 aromatic amino acid a 99.0 2.5E-09 5.5E-14 109.9 11.6 123 273-411 153-282 (391)
198 PRK07865 N-succinyldiaminopime 99.0 1.7E-09 3.6E-14 110.0 9.8 91 297-390 149-249 (364)
199 PRK08153 histidinol-phosphate 99.0 2.6E-09 5.6E-14 109.1 11.2 107 297-412 156-267 (369)
200 PRK08045 cystathionine gamma-s 99.0 2.2E-09 4.8E-14 110.9 9.6 107 296-414 137-248 (386)
201 PRK05968 hypothetical protein; 98.9 1.5E-09 3.2E-14 112.2 8.0 134 256-414 119-258 (389)
202 TIGR01329 cysta_beta_ly_E cyst 98.9 1.6E-09 3.4E-14 111.5 8.2 134 256-414 102-242 (378)
203 PLN02187 rooty/superroot1 98.9 2.5E-09 5.4E-14 112.9 9.7 113 297-412 205-329 (462)
204 PLN00143 tyrosine/nicotianamin 98.9 8.9E-09 1.9E-13 106.8 13.5 80 297-378 171-256 (409)
205 TIGR03539 DapC_actino succinyl 98.9 3.6E-09 7.7E-14 107.5 10.2 94 296-390 142-243 (357)
206 TIGR01140 L_thr_O3P_dcar L-thr 98.9 3.8E-09 8.3E-14 106.2 10.3 87 299-390 128-220 (330)
207 PRK07550 hypothetical protein; 98.9 3.8E-09 8.3E-14 108.2 10.0 103 273-390 153-262 (386)
208 PRK05967 cystathionine beta-ly 98.9 2E-09 4.2E-14 111.6 7.8 134 256-414 120-259 (395)
209 PRK08636 aspartate aminotransf 98.9 6.1E-09 1.3E-13 107.5 11.4 92 296-389 175-273 (403)
210 PRK08776 cystathionine gamma-s 98.9 4.9E-09 1.1E-13 109.0 10.4 107 296-414 145-256 (405)
211 PRK14807 histidinol-phosphate 98.9 6.1E-09 1.3E-13 105.5 10.8 100 273-390 137-239 (351)
212 PRK06107 aspartate aminotransf 98.9 5.4E-09 1.2E-13 107.9 10.5 111 297-411 167-286 (402)
213 PRK07671 cystathionine beta-ly 98.9 3.5E-09 7.5E-14 109.0 8.8 134 256-414 105-245 (377)
214 PRK07812 O-acetylhomoserine am 98.9 2.3E-09 5.1E-14 112.4 7.6 68 296-373 155-222 (436)
215 TIGR01977 am_tr_V_EF2568 cyste 98.9 4.2E-09 9E-14 106.9 9.2 130 273-426 127-274 (376)
216 PRK05664 threonine-phosphate d 98.9 9E-09 2E-13 103.6 11.2 87 299-391 127-219 (330)
217 PRK06084 O-acetylhomoserine am 98.9 4.5E-09 9.8E-14 109.9 9.0 118 273-414 133-287 (425)
218 PRK06855 aminotransferase; Val 98.9 4.9E-09 1.1E-13 109.6 9.3 93 273-378 159-257 (433)
219 PLN02721 threonine aldolase 98.9 7.4E-09 1.6E-13 103.9 10.1 106 273-388 120-230 (353)
220 TIGR01264 tyr_amTase_E tyrosin 98.9 8.2E-09 1.8E-13 106.4 10.7 90 297-388 169-270 (401)
221 PRK05839 hypothetical protein; 98.9 8.5E-09 1.8E-13 105.5 10.6 93 298-390 157-258 (374)
222 PLN00145 tyrosine/nicotianamin 98.9 7.5E-09 1.6E-13 108.2 10.3 84 297-383 191-283 (430)
223 PLN03026 histidinol-phosphate 98.9 8E-09 1.7E-13 106.1 10.3 105 297-411 176-283 (380)
224 PRK06425 histidinol-phosphate 98.9 6.5E-09 1.4E-13 104.6 9.4 89 299-391 125-220 (332)
225 TIGR02006 IscS cysteine desulf 98.9 4.4E-09 9.5E-14 108.6 8.1 112 296-416 142-259 (402)
226 PLN02656 tyrosine transaminase 98.9 7.8E-09 1.7E-13 107.1 9.9 111 297-412 170-294 (409)
227 COG0079 HisC Histidinol-phosph 98.9 5.9E-09 1.3E-13 106.7 8.6 92 296-393 145-241 (356)
228 COG0626 MetC Cystathionine bet 98.9 9.4E-09 2E-13 106.0 10.2 138 254-414 117-261 (396)
229 PLN02368 alanine transaminase 98.9 1.6E-08 3.5E-13 105.2 12.0 110 273-389 194-320 (407)
230 PRK07050 cystathionine beta-ly 98.9 3.7E-09 8.1E-14 109.4 7.2 106 296-413 150-260 (394)
231 PRK09275 aspartate aminotransf 98.9 7.7E-09 1.7E-13 110.7 9.7 79 297-381 242-328 (527)
232 PRK07337 aminotransferase; Val 98.8 1.2E-08 2.5E-13 104.7 10.3 89 297-390 164-258 (388)
233 PRK05939 hypothetical protein; 98.8 6.1E-09 1.3E-13 108.0 8.2 108 296-414 131-263 (397)
234 cd00613 GDC-P Glycine cleavage 98.8 1E-08 2.3E-13 104.9 9.5 81 296-386 159-246 (398)
235 PRK07568 aspartate aminotransf 98.8 1.5E-08 3.3E-13 103.9 10.7 91 297-389 163-261 (397)
236 PLN02409 serine--glyoxylate am 98.8 2.5E-08 5.4E-13 103.3 12.3 137 273-428 123-279 (401)
237 PRK15481 transcriptional regul 98.8 1.8E-08 4E-13 104.9 11.4 119 273-411 201-326 (431)
238 PF01053 Cys_Met_Meta_PP: Cys/ 98.8 7.2E-09 1.6E-13 107.1 8.1 136 254-414 109-253 (386)
239 PRK13355 bifunctional HTH-doma 98.8 1.3E-08 2.8E-13 108.8 10.3 83 297-382 282-373 (517)
240 PRK06176 cystathionine gamma-s 98.8 1.5E-08 3.2E-13 104.5 10.2 134 254-412 103-243 (380)
241 PRK08363 alanine aminotransfer 98.8 1.1E-08 2.3E-13 105.5 9.1 89 297-388 167-263 (398)
242 TIGR01326 OAH_OAS_sulfhy OAH/O 98.8 4.3E-09 9.3E-14 109.7 6.2 101 256-379 113-219 (418)
243 PLN02651 cysteine desulfurase 98.8 8.6E-09 1.9E-13 104.9 8.2 121 273-416 128-255 (364)
244 KOG1403|consensus 98.8 6.4E-09 1.4E-13 102.0 6.8 132 274-419 194-333 (452)
245 PRK01533 histidinol-phosphate 98.8 9.5E-09 2.1E-13 105.2 8.4 107 298-411 153-265 (366)
246 PTZ00433 tyrosine aminotransfe 98.8 2.3E-08 4.9E-13 103.7 11.3 91 297-389 178-280 (412)
247 PRK10534 L-threonine aldolase; 98.8 5.5E-09 1.2E-13 104.6 6.4 111 296-412 129-243 (333)
248 PRK05994 O-acetylhomoserine am 98.8 1.7E-08 3.6E-13 105.7 10.1 73 296-378 148-224 (427)
249 PRK04781 histidinol-phosphate 98.8 3E-08 6.5E-13 101.2 11.7 91 297-392 153-248 (364)
250 COG1168 MalY Bifunctional PLP- 98.8 4.7E-08 1E-12 98.8 12.8 125 274-412 148-280 (388)
251 PRK08064 cystathionine beta-ly 98.8 1.2E-08 2.5E-13 105.6 8.5 106 296-413 138-248 (390)
252 PRK08056 threonine-phosphate d 98.8 1.9E-08 4.1E-13 102.2 9.9 89 297-389 143-238 (356)
253 PTZ00376 aspartate aminotransf 98.8 1.4E-08 3E-13 105.1 9.0 102 273-386 163-276 (404)
254 PLN02450 1-aminocyclopropane-1 98.8 4.2E-08 9.1E-13 103.8 12.7 110 273-389 175-298 (468)
255 PRK06358 threonine-phosphate d 98.8 2.8E-08 6E-13 101.0 10.4 91 298-390 143-240 (354)
256 PRK08354 putative aminotransfe 98.8 3.7E-08 8E-13 98.3 11.1 80 299-390 120-205 (311)
257 PRK07590 L,L-diaminopimelate a 98.8 2.5E-08 5.4E-13 103.2 10.2 86 297-384 177-269 (409)
258 PRK07582 cystathionine gamma-l 98.8 1.9E-08 4.2E-13 103.0 9.2 107 296-414 132-243 (366)
259 PRK14809 histidinol-phosphate 98.8 2.2E-08 4.7E-13 101.6 9.3 105 298-411 156-265 (357)
260 PLN02955 8-amino-7-oxononanoat 98.8 2.6E-08 5.6E-13 105.1 9.9 93 229-337 99-212 (476)
261 PRK09265 aminotransferase AlaT 98.8 2.7E-08 5.8E-13 102.7 9.9 80 297-378 169-254 (404)
262 PRK05387 histidinol-phosphate 98.8 2.3E-08 5.1E-13 100.8 9.2 106 299-411 147-256 (353)
263 PRK06959 putative threonine-ph 98.8 3.6E-08 7.8E-13 99.8 10.6 103 299-411 133-241 (339)
264 PRK07392 threonine-phosphate d 98.8 3.4E-08 7.5E-13 100.3 10.3 108 297-411 149-259 (360)
265 PRK01688 histidinol-phosphate 98.8 2.9E-08 6.2E-13 100.8 9.6 91 297-392 146-241 (351)
266 TIGR01265 tyr_nico_aTase tyros 98.8 3.5E-08 7.7E-13 101.9 10.4 81 297-379 170-256 (403)
267 PRK06702 O-acetylhomoserine am 98.8 1.7E-08 3.8E-13 105.7 8.1 133 257-414 118-289 (432)
268 PLN02397 aspartate transaminas 98.7 2.4E-08 5.1E-13 104.2 8.7 88 296-385 194-293 (423)
269 KOG0053|consensus 98.7 4E-08 8.8E-13 100.8 9.8 107 296-414 162-273 (409)
270 TIGR03801 asp_4_decarbox aspar 98.7 2.8E-08 6.2E-13 106.2 9.1 79 297-381 241-327 (521)
271 PRK13520 L-tyrosine decarboxyl 98.7 6.9E-08 1.5E-12 97.6 11.5 128 273-416 141-278 (371)
272 PRK15029 arginine decarboxylas 98.7 4.3E-08 9.3E-13 108.6 10.6 137 274-421 293-445 (755)
273 TIGR00474 selA seryl-tRNA(sec) 98.7 1.1E-07 2.3E-12 100.4 13.0 88 299-388 216-310 (454)
274 PF01276 OKR_DC_1: Orn/Lys/Arg 98.7 6.4E-09 1.4E-13 108.0 3.6 132 274-424 154-301 (417)
275 PF00266 Aminotran_5: Aminotra 98.7 1.9E-07 4.2E-12 95.0 14.3 155 251-428 100-281 (371)
276 PTZ00377 alanine aminotransfer 98.7 5.8E-08 1.3E-12 102.9 10.8 111 273-390 202-329 (481)
277 PRK06225 aspartate aminotransf 98.7 5.4E-08 1.2E-12 99.5 10.1 86 298-389 159-250 (380)
278 TIGR03542 DAPAT_plant LL-diami 98.7 6.8E-08 1.5E-12 99.8 10.9 85 297-383 174-265 (402)
279 PLN02607 1-aminocyclopropane-1 98.7 1E-07 2.2E-12 100.4 12.4 110 273-389 184-305 (447)
280 PRK09440 avtA valine--pyruvate 98.7 5.1E-08 1.1E-12 100.9 9.7 89 297-390 180-274 (416)
281 PRK05166 histidinol-phosphate 98.7 6.9E-08 1.5E-12 98.6 10.3 92 298-390 161-258 (371)
282 TIGR03812 tyr_de_CO2_Arch tyro 98.7 1.1E-07 2.4E-12 96.4 11.1 129 273-416 143-283 (373)
283 PRK08248 O-acetylhomoserine am 98.7 3.4E-08 7.3E-13 103.6 7.5 137 254-414 118-292 (431)
284 PRK04635 histidinol-phosphate 98.7 6.3E-08 1.4E-12 98.3 9.3 89 297-390 148-240 (354)
285 PRK03967 histidinol-phosphate 98.7 7E-08 1.5E-12 97.4 9.5 85 299-390 143-230 (337)
286 PRK14012 cysteine desulfurase; 98.7 4.6E-08 1E-12 101.0 7.9 88 273-382 134-222 (404)
287 PLN02376 1-aminocyclopropane-1 98.7 2.1E-07 4.5E-12 99.3 12.6 93 297-389 200-305 (496)
288 COG2873 MET17 O-acetylhomoseri 98.6 8.3E-08 1.8E-12 96.8 8.9 82 273-377 137-222 (426)
289 PRK14808 histidinol-phosphate 98.6 9.5E-08 2.1E-12 96.5 9.5 105 297-412 139-246 (335)
290 TIGR01821 5aminolev_synth 5-am 98.6 2.5E-08 5.4E-13 102.8 5.3 45 95-140 45-89 (402)
291 TIGR01437 selA_rel uncharacter 98.6 2.2E-07 4.8E-12 95.1 11.8 93 273-388 138-231 (363)
292 cd01494 AAT_I Aspartate aminot 98.6 9.4E-08 2E-12 84.5 7.7 77 296-378 92-169 (170)
293 KOG1405|consensus 98.6 1.2E-07 2.5E-12 95.0 9.0 130 273-420 255-390 (484)
294 PRK09257 aromatic amino acid a 98.6 9E-08 2E-12 98.6 8.5 93 273-377 159-259 (396)
295 TIGR03402 FeS_nifS cysteine de 98.6 1.1E-07 2.4E-12 97.0 8.9 119 273-416 126-251 (379)
296 TIGR03403 nifS_epsilon cystein 98.6 1.8E-07 3.9E-12 95.6 10.3 75 297-380 141-216 (382)
297 PRK09105 putative aminotransfe 98.6 1.6E-07 3.4E-12 96.3 9.5 88 297-389 166-258 (370)
298 PLN02231 alanine transaminase 98.6 3.8E-07 8.3E-12 98.1 12.6 111 273-390 255-381 (534)
299 PRK13393 5-aminolevulinate syn 98.6 4.7E-08 1E-12 101.0 5.4 66 64-140 24-89 (406)
300 PRK02610 histidinol-phosphate 98.6 2.9E-07 6.4E-12 94.1 11.0 103 273-390 154-260 (374)
301 PRK07908 hypothetical protein; 98.6 2.7E-07 5.8E-12 93.3 10.5 89 297-391 140-231 (349)
302 PRK06836 aspartate aminotransf 98.6 2.7E-07 5.9E-12 95.1 10.6 95 273-384 158-264 (394)
303 PRK13238 tnaA tryptophanase/L- 98.5 4.9E-07 1.1E-11 95.7 11.8 136 273-417 163-315 (460)
304 PRK05613 O-acetylhomoserine am 98.5 1.3E-07 2.8E-12 99.3 7.2 101 256-379 125-232 (437)
305 PLN02672 methionine S-methyltr 98.5 8.2E-07 1.8E-11 101.5 12.0 92 298-389 831-936 (1082)
306 COG0520 csdA Selenocysteine ly 98.5 6.5E-07 1.4E-11 93.2 10.2 114 251-386 123-245 (405)
307 PRK08134 O-acetylhomoserine am 98.5 4.7E-07 1E-11 95.1 8.9 98 257-377 121-224 (433)
308 COG1167 ARO8 Transcriptional r 98.4 1.2E-06 2.7E-11 92.5 11.6 124 254-390 190-324 (459)
309 PRK04870 histidinol-phosphate 98.4 8.6E-07 1.9E-11 89.8 9.7 99 273-390 142-243 (356)
310 PRK08637 hypothetical protein; 98.4 9.2E-07 2E-11 90.9 9.9 106 273-388 132-257 (388)
311 PRK09064 5-aminolevulinate syn 98.4 2.5E-07 5.4E-12 95.5 5.4 46 94-140 45-90 (407)
312 cd00616 AHBA_syn 3-amino-5-hyd 98.4 1.6E-06 3.4E-11 87.0 10.7 107 297-414 107-230 (352)
313 PLN03227 serine palmitoyltrans 98.4 5.7E-07 1.2E-11 93.1 7.6 86 235-336 1-93 (392)
314 cd06450 DOPA_deC_like DOPA dec 98.4 7.6E-07 1.7E-11 89.1 8.2 95 273-378 132-229 (345)
315 TIGR03531 selenium_SpcS O-phos 98.4 3.5E-06 7.5E-11 88.7 12.7 105 273-389 191-298 (444)
316 PLN02822 serine palmitoyltrans 98.4 4.3E-07 9.3E-12 96.5 6.0 59 65-140 95-153 (481)
317 PRK04311 selenocysteine syntha 98.4 2.1E-06 4.5E-11 90.9 10.8 101 273-388 206-315 (464)
318 PLN02271 serine hydroxymethylt 98.4 3.3E-06 7.2E-11 90.4 12.2 87 273-380 287-375 (586)
319 cd00617 Tnase_like Tryptophana 98.4 7.9E-07 1.7E-11 93.3 7.4 128 273-413 138-286 (431)
320 COG0075 Serine-pyruvate aminot 98.3 1.2E-05 2.7E-10 82.7 14.9 146 252-417 91-261 (383)
321 TIGR01822 2am3keto_CoA 2-amino 98.3 1E-06 2.2E-11 90.1 6.6 73 45-139 8-81 (393)
322 PRK13578 ornithine decarboxyla 98.3 2.3E-06 4.9E-11 94.4 9.6 119 297-421 284-419 (720)
323 KOG0256|consensus 98.3 1.2E-05 2.7E-10 82.1 13.8 109 274-390 211-330 (471)
324 KOG0633|consensus 98.3 2.2E-06 4.8E-11 83.1 8.0 100 296-402 160-265 (375)
325 PRK00451 glycine dehydrogenase 98.3 2.7E-06 5.8E-11 89.1 9.0 79 296-386 204-290 (447)
326 PRK15400 lysine decarboxylase 98.3 2.9E-06 6.3E-11 93.5 9.3 136 274-421 283-423 (714)
327 KOG1360|consensus 98.2 6.2E-07 1.3E-11 91.1 2.8 47 93-140 169-215 (570)
328 PRK13392 5-aminolevulinate syn 98.2 1.8E-06 3.9E-11 89.4 5.5 80 45-140 11-90 (410)
329 PRK15399 lysine decarboxylase 98.2 8E-06 1.7E-10 90.1 10.5 135 274-421 283-423 (713)
330 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.2 1E-05 2.2E-10 83.0 10.3 101 307-415 127-250 (375)
331 PRK06434 cystathionine gamma-l 98.1 6.4E-06 1.4E-10 85.3 8.5 105 296-414 148-257 (384)
332 PRK05937 8-amino-7-oxononanoat 98.1 2E-06 4.4E-11 87.9 4.6 45 95-140 4-55 (370)
333 KOG1358|consensus 98.1 2.9E-06 6.3E-11 86.2 5.0 103 203-339 81-191 (467)
334 PRK04366 glycine dehydrogenase 98.1 1.2E-05 2.5E-10 85.7 9.3 92 273-386 198-297 (481)
335 TIGR03588 PseC UDP-4-keto-6-de 98.1 3.4E-05 7.4E-10 79.0 12.0 97 273-387 107-207 (380)
336 PRK07505 hypothetical protein; 98.1 5.2E-06 1.1E-10 85.8 6.0 82 49-137 6-88 (402)
337 KOG0259|consensus 98.0 4.4E-05 9.6E-10 77.5 12.1 112 252-378 138-285 (447)
338 TIGR02379 ECA_wecE TDP-4-keto- 98.0 2.3E-05 5E-10 80.8 9.9 99 307-416 127-252 (376)
339 COG1982 LdcC Arginine/lysine/o 98.0 1.2E-05 2.7E-10 85.8 7.9 113 297-421 168-289 (557)
340 PRK11658 UDP-4-amino-4-deoxy-L 98.0 3.5E-05 7.7E-10 79.3 10.5 72 308-388 130-205 (379)
341 PF00464 SHMT: Serine hydroxym 98.0 3.5E-05 7.6E-10 80.0 10.3 123 273-417 158-296 (399)
342 COG1104 NifS Cysteine sulfinat 97.9 3.8E-05 8.3E-10 78.9 9.0 146 247-417 100-257 (386)
343 PRK03080 phosphoserine aminotr 97.9 2.4E-05 5.2E-10 80.5 7.6 117 299-428 139-278 (378)
344 PRK02769 histidine decarboxyla 97.9 0.00016 3.4E-09 74.9 13.3 137 273-424 147-294 (380)
345 KOG1549|consensus 97.9 2E-05 4.3E-10 81.6 6.2 76 296-380 181-257 (428)
346 PRK15407 lipopolysaccharide bi 97.9 0.00012 2.6E-09 77.0 11.8 109 297-416 160-309 (438)
347 PF01041 DegT_DnrJ_EryC1: DegT 97.8 9.6E-05 2.1E-09 75.5 9.7 121 273-417 103-242 (363)
348 COG0112 GlyA Glycine/serine hy 97.8 0.00011 2.5E-09 75.0 9.7 104 273-397 155-261 (413)
349 TIGR01366 serC_3 phosphoserine 97.8 6.9E-05 1.5E-09 76.8 8.3 119 296-428 128-267 (361)
350 COG1921 SelA Selenocysteine sy 97.8 0.00022 4.8E-09 73.4 11.6 134 266-418 139-273 (395)
351 COG3977 Alanine-alpha-ketoisov 97.7 0.00019 4.2E-09 71.1 10.0 109 296-409 179-294 (417)
352 KOG2862|consensus 97.7 0.00066 1.4E-08 67.7 13.0 145 252-417 103-278 (385)
353 PRK07179 hypothetical protein; 97.6 6.6E-05 1.4E-09 77.7 5.6 46 92-138 51-96 (407)
354 KOG0634|consensus 97.6 0.00035 7.7E-09 72.1 10.3 130 255-390 160-320 (472)
355 TIGR02618 tyr_phenol_ly tyrosi 97.5 0.00036 7.7E-09 73.4 9.3 104 273-389 156-277 (450)
356 PRK13237 tyrosine phenol-lyase 97.4 0.0011 2.4E-08 70.0 11.2 104 273-389 163-284 (460)
357 PLN03032 serine decarboxylase; 97.4 0.0027 5.9E-08 65.6 14.0 102 273-387 148-256 (374)
358 PRK05355 3-phosphoserine/phosp 97.4 0.00049 1.1E-08 70.6 8.1 112 299-428 144-268 (360)
359 PLN02414 glycine dehydrogenase 97.3 0.00053 1.1E-08 78.6 7.9 97 273-387 653-756 (993)
360 COG1103 Archaea-specific pyrid 97.3 0.003 6.5E-08 62.1 11.9 86 296-390 156-243 (382)
361 PLN02724 Molybdenum cofactor s 97.3 0.0011 2.3E-08 75.1 10.0 113 296-417 192-336 (805)
362 cd00611 PSAT_like Phosphoserin 97.3 0.00069 1.5E-08 69.1 7.4 116 297-428 139-265 (355)
363 COG0399 WecE Predicted pyridox 97.2 0.0024 5.2E-08 65.9 11.2 120 273-416 112-249 (374)
364 COG2008 GLY1 Threonine aldolas 97.1 0.0013 2.7E-08 66.7 7.3 129 273-412 114-246 (342)
365 KOG1368|consensus 97.1 0.00069 1.5E-08 67.2 5.0 131 273-412 136-271 (384)
366 TIGR00858 bioF 8-amino-7-oxono 97.0 0.00098 2.1E-08 66.7 5.9 59 64-139 1-59 (360)
367 TIGR03799 NOD_PanD_pyr putativ 97.0 0.005 1.1E-07 66.4 11.5 105 273-388 249-357 (522)
368 TIGR01364 serC_1 phosphoserine 97.0 0.0018 3.9E-08 66.2 7.4 113 299-428 133-257 (349)
369 TIGR01788 Glu-decarb-GAD gluta 96.9 0.0038 8.3E-08 65.7 9.4 89 273-380 176-276 (431)
370 TIGR00461 gcvP glycine dehydro 96.9 0.0027 5.8E-08 72.3 8.6 96 273-387 615-718 (939)
371 COG3844 Kynureninase [Amino ac 96.8 0.0055 1.2E-07 61.6 9.0 79 273-373 156-235 (407)
372 PF01212 Beta_elim_lyase: Beta 96.8 0.0024 5.2E-08 63.8 6.3 104 273-387 108-216 (290)
373 cd06454 KBL_like KBL_like; thi 96.8 0.00098 2.1E-08 66.6 3.5 43 95-138 1-43 (349)
374 PF03841 SelA: L-seryl-tRNA se 96.8 0.0027 5.8E-08 65.0 6.4 129 273-417 126-262 (367)
375 PRK05958 8-amino-7-oxononanoat 96.7 0.0034 7.5E-08 63.6 7.1 68 50-139 15-82 (385)
376 COG0076 GadB Glutamate decarbo 96.6 0.024 5.3E-07 60.2 12.9 101 273-387 195-300 (460)
377 PRK05367 glycine dehydrogenase 96.6 0.0043 9.3E-08 71.3 7.4 96 273-387 627-730 (954)
378 COG1448 TyrB Aspartate/tyrosin 96.5 0.0066 1.4E-07 62.2 7.4 89 295-388 171-273 (396)
379 PRK12566 glycine dehydrogenase 96.4 0.016 3.4E-07 66.1 10.0 98 273-388 628-732 (954)
380 TIGR02617 tnaA_trp_ase tryptop 96.3 0.0083 1.8E-07 63.2 6.8 99 273-381 169-281 (467)
381 PLN02880 tyrosine decarboxylas 96.2 0.0098 2.1E-07 63.7 6.6 96 273-379 223-321 (490)
382 TIGR01825 gly_Cac_T_rel pyrido 96.1 0.01 2.2E-07 60.5 6.3 58 64-138 18-75 (385)
383 PF06838 Met_gamma_lyase: Meth 95.9 0.0099 2.2E-07 60.8 5.0 67 312-387 174-246 (403)
384 PRK06939 2-amino-3-ketobutyrat 95.7 0.02 4.2E-07 58.4 6.0 59 65-139 27-85 (397)
385 TIGR01365 serC_2 phosphoserine 95.3 0.033 7.2E-07 57.6 6.4 66 309-387 140-207 (374)
386 PF12897 Aminotran_MocR: Alani 95.1 0.08 1.7E-06 54.7 8.2 105 273-389 160-278 (425)
387 PLN02263 serine decarboxylase 94.8 0.62 1.3E-05 49.7 14.2 99 273-384 215-320 (470)
388 PRK05367 glycine dehydrogenase 94.6 0.073 1.6E-06 61.4 7.2 77 302-387 211-293 (954)
389 PF05889 SLA_LP_auto_ag: Solub 94.6 0.15 3.3E-06 52.8 8.8 99 273-388 141-247 (389)
390 PLN02452 phosphoserine transam 94.5 0.044 9.5E-07 56.6 4.7 102 309-427 158-271 (365)
391 PLN02590 probable tyrosine dec 94.5 0.15 3.2E-06 55.4 8.7 96 273-379 271-369 (539)
392 TIGR03576 pyridox_MJ0158 pyrid 94.4 0.024 5.1E-07 57.9 2.4 24 103-127 27-50 (346)
393 PF00282 Pyridoxal_deC: Pyrido 94.3 0.18 3.9E-06 52.1 8.7 99 273-383 178-281 (373)
394 KOG0629|consensus 94.0 0.18 3.8E-06 52.6 7.7 118 232-371 196-325 (510)
395 TIGR03811 tyr_de_CO2_Ent tyros 93.7 0.88 1.9E-05 50.2 12.9 107 273-388 262-407 (608)
396 COG4100 Cystathionine beta-lya 92.1 0.13 2.8E-06 51.5 3.4 68 311-387 184-257 (416)
397 PLN02414 glycine dehydrogenase 92.1 0.6 1.3E-05 54.1 9.1 75 303-386 240-320 (993)
398 PRK13034 serine hydroxymethylt 91.8 0.1 2.2E-06 54.6 2.4 40 96-140 30-70 (416)
399 KOG2467|consensus 91.8 0.58 1.3E-05 48.1 7.6 62 311-378 202-264 (477)
400 PF02347 GDC-P: Glycine cleava 89.7 0.77 1.7E-05 48.5 6.5 80 296-386 197-283 (429)
401 KOG1412|consensus 89.6 0.87 1.9E-05 46.0 6.5 92 296-388 178-280 (410)
402 TIGR00707 argD acetylornithine 89.2 0.44 9.6E-06 48.3 4.3 50 62-128 9-61 (379)
403 PRK12462 phosphoserine aminotr 88.8 0.99 2.1E-05 46.7 6.6 102 309-427 156-270 (364)
404 KOG0258|consensus 86.5 1.9 4.1E-05 44.8 6.8 107 273-387 200-323 (475)
405 COG1003 GcvP Glycine cleavage 86.2 1.6 3.4E-05 45.9 6.2 93 273-387 194-294 (496)
406 TIGR03246 arg_catab_astC succi 83.9 1.1 2.4E-05 46.3 3.9 45 65-126 20-67 (397)
407 PRK02936 argD acetylornithine 83.8 1 2.3E-05 45.8 3.7 47 64-127 13-62 (377)
408 KOG1383|consensus 83.3 6.9 0.00015 41.5 9.3 86 296-382 218-307 (491)
409 TIGR01885 Orn_aminotrans ornit 82.1 2 4.3E-05 44.4 5.0 50 65-130 22-73 (401)
410 PRK13397 3-deoxy-7-phosphohept 80.7 11 0.00024 37.0 9.3 42 297-338 151-196 (250)
411 PRK12381 bifunctional succinyl 80.5 2 4.3E-05 44.7 4.3 46 64-126 23-71 (406)
412 KOG3846|consensus 80.5 20 0.00044 36.4 11.0 66 295-369 213-278 (465)
413 PRK03244 argD acetylornithine 79.6 1.8 3.9E-05 44.5 3.6 48 65-129 28-78 (398)
414 cd00610 OAT_like Acetyl ornith 78.8 2.1 4.5E-05 43.9 3.8 33 94-126 35-68 (413)
415 PRK00854 rocD ornithine--oxo-a 74.8 4.1 8.8E-05 41.9 4.6 55 62-132 23-79 (401)
416 PRK01278 argD acetylornithine 73.7 3.4 7.3E-05 42.4 3.7 45 65-126 16-63 (389)
417 PRK13396 3-deoxy-7-phosphohept 70.1 25 0.00054 36.3 8.9 42 297-338 237-283 (352)
418 PRK12595 bifunctional 3-deoxy- 69.8 21 0.00045 36.9 8.4 42 297-338 254-299 (360)
419 PRK03715 argD acetylornithine 69.4 4.8 0.0001 41.8 3.7 48 65-129 21-71 (395)
420 PRK08117 4-aminobutyrate amino 68.4 5.2 0.00011 42.0 3.7 53 65-134 28-83 (433)
421 PLN02760 4-aminobutyrate:pyruv 68.0 5.1 0.00011 43.2 3.6 36 92-129 86-124 (504)
422 PRK06082 4-aminobutyrate amino 67.8 5.8 0.00012 42.2 4.0 37 93-129 70-106 (459)
423 PRK05093 argD bifunctional N-s 66.4 5.8 0.00013 41.0 3.6 49 62-127 22-73 (403)
424 TIGR01361 DAHP_synth_Bsub phos 66.1 39 0.00084 33.3 9.1 41 298-338 162-206 (260)
425 TIGR00461 gcvP glycine dehydro 64.5 14 0.0003 42.9 6.4 79 297-386 195-280 (939)
426 PRK08297 L-lysine aminotransfe 62.5 9.6 0.00021 40.3 4.4 47 202-263 29-79 (443)
427 PRK12566 glycine dehydrogenase 61.2 21 0.00046 41.5 7.0 77 297-385 209-293 (954)
428 TIGR03251 LAT_fam L-lysine 6-t 59.6 15 0.00033 38.6 5.2 46 203-263 23-72 (431)
429 PRK00062 glutamate-1-semialdeh 58.7 12 0.00026 39.2 4.3 34 92-128 47-83 (426)
430 COG0403 GcvP Glycine cleavage 56.8 44 0.00095 35.4 7.8 75 296-382 210-293 (450)
431 PTZ00125 ornithine aminotransf 56.0 15 0.00033 37.6 4.4 51 64-130 15-67 (400)
432 PRK04260 acetylornithine amino 54.9 14 0.0003 37.7 3.9 48 65-128 14-62 (375)
433 TIGR00699 GABAtrns_euk 4-amino 54.9 14 0.0003 39.5 4.1 46 199-259 40-86 (464)
434 PLN02624 ornithine-delta-amino 54.1 17 0.00037 38.8 4.6 51 64-130 59-111 (474)
435 KOG0628|consensus 53.2 20 0.00044 38.2 4.8 58 273-339 219-278 (511)
436 PLN03226 serine hydroxymethylt 52.5 27 0.0006 37.3 5.8 91 232-335 34-134 (475)
437 KOG3843|consensus 51.9 10 0.00022 37.7 2.2 71 315-388 176-249 (432)
438 TIGR00508 bioA adenosylmethion 48.4 20 0.00044 37.7 4.0 35 94-130 44-81 (427)
439 cd06452 SepCysS Sep-tRNA:Cys-t 46.1 12 0.00025 37.9 1.7 30 111-140 9-38 (361)
440 COG3033 TnaA Tryptophanase [Am 45.6 40 0.00088 35.1 5.4 103 273-388 171-294 (471)
441 cd01473 vWA_CTRP CTRP for CS 45.6 1.9E+02 0.0041 26.7 9.7 78 251-331 67-144 (192)
442 PF04864 Alliinase_C: Allinase 42.0 33 0.00071 35.4 4.2 78 297-388 138-219 (363)
443 COG1932 SerC Phosphoserine ami 41.7 73 0.0016 33.0 6.6 90 327-428 171-273 (365)
444 PF00155 Aminotran_1_2: Aminot 40.0 18 0.00038 36.3 1.9 28 96-124 2-29 (363)
445 TIGR00381 cdhD CO dehydrogenas 39.7 1.8E+02 0.0038 30.6 9.1 82 234-331 158-245 (389)
446 cd00378 SHMT Serine-glycine hy 39.4 18 0.00039 37.0 1.9 40 96-140 20-61 (402)
447 PF00128 Alpha-amylase: Alpha 38.7 24 0.00051 34.0 2.5 34 300-336 42-75 (316)
448 PRK08673 3-deoxy-7-phosphohept 38.4 1.5E+02 0.0033 30.3 8.4 42 297-338 229-274 (335)
449 PF13872 AAA_34: P-loop contai 38.0 21 0.00047 36.0 2.1 27 314-340 160-187 (303)
450 PRK12403 putative aminotransfe 36.1 31 0.00067 36.7 3.1 36 93-130 52-90 (460)
451 COG0296 GlgB 1,4-alpha-glucan 35.2 38 0.00083 37.6 3.7 81 305-389 206-287 (628)
452 KOG1411|consensus 33.2 57 0.0012 33.8 4.2 92 294-386 196-298 (427)
453 cd06502 TA_like Low-specificit 32.0 57 0.0012 32.1 4.1 44 236-283 1-44 (338)
454 PRK02627 acetylornithine amino 31.7 48 0.001 33.7 3.6 32 94-127 38-72 (396)
455 TIGR02539 SepCysS Sep-tRNA:Cys 31.1 80 0.0017 32.1 5.1 23 250-272 18-40 (370)
456 smart00642 Aamy Alpha-amylase 31.0 45 0.00098 30.4 2.9 27 309-335 66-92 (166)
457 cd01482 vWA_collagen_alphaI-XI 30.6 3.2E+02 0.007 24.0 8.5 71 254-331 63-135 (164)
458 PRK13398 3-deoxy-7-phosphohept 29.6 2.3E+02 0.0049 28.1 7.8 27 312-338 182-208 (266)
459 cd01469 vWA_integrins_alpha_su 26.9 4.5E+02 0.0098 23.6 8.9 57 270-330 79-136 (177)
460 KOG2792|consensus 26.2 2E+02 0.0043 28.7 6.4 16 315-330 212-227 (280)
461 COG0160 GabT 4-aminobutyrate a 26.0 1.2E+02 0.0026 32.4 5.4 48 65-127 41-89 (447)
462 PF13401 AAA_22: AAA domain; P 25.6 67 0.0015 26.8 2.9 23 315-337 76-99 (131)
463 PF13481 AAA_25: AAA domain; P 23.9 88 0.0019 28.2 3.6 35 297-331 142-184 (193)
464 COG2870 RfaE ADP-heptose synth 22.5 1.2E+02 0.0027 32.0 4.5 34 297-333 145-178 (467)
465 cd01831 Endoglucanase_E_like E 22.4 5E+02 0.011 22.8 8.2 37 297-333 97-137 (169)
466 TIGR02100 glgX_debranch glycog 21.8 66 0.0014 36.3 2.6 38 299-336 231-268 (688)
467 COG2256 MGS1 ATPase related to 21.6 1.5E+02 0.0032 31.5 4.9 37 298-337 75-116 (436)
468 PF06733 DEAD_2: DEAD_2; Inte 21.4 48 0.001 30.0 1.2 15 324-338 144-158 (174)
469 cd00984 DnaB_C DnaB helicase C 21.1 2.2E+02 0.0049 26.6 5.9 51 273-331 108-168 (242)
470 cd01455 vWA_F11C1-5a_type Von 20.9 6.9E+02 0.015 23.6 8.9 36 295-331 112-147 (191)
471 COG0108 RibB 3,4-dihydroxy-2-b 20.8 1.1E+02 0.0023 29.3 3.4 33 297-330 157-189 (203)
472 PF03652 UPF0081: Uncharacteri 20.6 2.8E+02 0.0061 24.4 5.9 53 273-337 40-99 (135)
473 PRK06149 hypothetical protein; 20.6 99 0.0021 36.2 3.8 35 93-128 583-617 (972)
474 cd01460 vWA_midasin VWA_Midasi 20.5 6.9E+02 0.015 24.7 9.2 96 233-334 102-205 (266)
475 COG2861 Uncharacterized protei 20.5 1.4E+02 0.0031 29.3 4.2 86 238-331 124-212 (250)
476 PRK09441 cytoplasmic alpha-amy 20.4 83 0.0018 33.6 3.0 29 307-335 75-103 (479)
477 TIGR02717 AcCoA-syn-alpha acet 20.1 8.9E+02 0.019 25.6 10.6 39 296-335 90-130 (447)
No 1
>KOG1357|consensus
Probab=100.00 E-value=2.3e-68 Score=535.32 Aligned_cols=320 Identities=50% Similarity=0.860 Sum_probs=270.1
Q ss_pred cccccccCCccchHHHHHHHHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCC
Q psy2206 30 EVSRMVKFGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFG 109 (430)
Q Consensus 30 ~~~~~~~~~~~pl~~~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa 109 (430)
+..+| +||+||+++||+||+|++|+|++|||+|||+|+||++|++++|+|+|+||||++||+..+||||||||||||+
T Consensus 73 ~~~~~--~g~~ply~~Fe~FY~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S~D~n~tfk~tG~~~~~lNlgSYNYLGFa 150 (519)
T KOG1357|consen 73 KDNEM--DGYAPLYSSFESFYSRRIYRRIRDCFERPICSVPGAWVDLMDRVSDDYNWTFKYTGTRSRCLNLGSYNYLGFA 150 (519)
T ss_pred ccccc--cCccchhhhHHHHHHHHHHHHHhHhhcCCCcCCCCceEEeeeeeccCCCceEEeccceeeeeeeccccccccc
Confidence 34445 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhhhCCccccCCccccccc-ccccceee----------EEeccccccccccccccCCccccCCCCch
Q psy2206 110 ENTGLCTERSKESVKQSGCALCSPSGEIASML-SKGASKSN----------ILFQAHTNGFANGISKSNGLLSSNGGYPD 178 (430)
Q Consensus 110 ~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l-~~~~~~l~----------~~~~gh~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
++++.|.+++.+++++||.++|+||.+.|+.- -+++.-|+ +|-.|..++-.
T Consensus 151 ~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~------------------ 212 (519)
T KOG1357|consen 151 QSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSM------------------ 212 (519)
T ss_pred ccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEecccccccc------------------
Confidence 99999999999999999999999999999982 11211111 11111111100
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+.|.--.+|+-|.-++ |..+ .+
T Consensus 213 ---------------------~~p~l~~~gsLIiSDe---------------------------lNHa----Si------ 234 (519)
T KOG1357|consen 213 ---------------------NIPSLLGKGSLIISDE---------------------------LNHA----SL------ 234 (519)
T ss_pred ---------------------CcceeecCCcceeecc---------------------------ccch----he------
Confidence 1122223333332211 1100 00
Q ss_pred HHHHhCCCCCCC--CC-----HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 259 SVKQSGCALCSP--SA-----PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 259 ai~~yG~g~~~s--r~-----~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
..|+-.++. |. +++||++|++++++|||+||+||++++||+|++|||+|.+++|+++++++++|.++|++
T Consensus 235 ---~~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~l 311 (519)
T KOG1357|consen 235 ---ITGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYL 311 (519)
T ss_pred ---eccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEe
Confidence 112221111 11 79999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||||++|++|++|+|+|+++++++.++||+||||.|+||+.|||++++++++++++..+....+++++||+++++.+.++
T Consensus 312 DEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl 391 (519)
T KOG1357|consen 312 DEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSV 391 (519)
T ss_pred eccccccccCCCCcceeeccCCCchhheeecceehhhcccccceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHccCCchHHHhhhhcC
Q psy2206 412 RIIMGLENGDEGNVRHSSI 430 (430)
Q Consensus 412 ~~l~~~~~~~~~~~r~~~L 430 (430)
++|+.+++++.++++++||
T Consensus 392 ~~i~G~dgt~~g~~k~~~l 410 (519)
T KOG1357|consen 392 KHIMGEDGTNRGRQKIERL 410 (519)
T ss_pred HhhcCCCcccHHHHHHHHH
Confidence 9999999999999999875
No 2
>PLN02483 serine palmitoyltransferase
Probab=100.00 E-value=4.5e-56 Score=469.14 Aligned_cols=279 Identities=45% Similarity=0.791 Sum_probs=255.0
Q ss_pred ccccccceeeEEeccccccccccccccCCccccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCC
Q psy2206 140 MLSKGASKSNILFQAHTNGFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETP 219 (430)
Q Consensus 140 ~l~~~~~~l~~~~~gh~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~ 219 (430)
.+..|.+|++++++||++||++++++.. ....++||+||+++||+||+|++|+|++|||+|||+++||++|++++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (489)
T PLN02483 9 ALTTYFSYGLLFAFGQLRDFFRAILDWW-KTSNLQGYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSN 87 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccCCCccccCHHHHHHHHhhhhcccccCCCCCCCCCCeEEEEEeecC
Confidence 4566778999999999999999999633 355679999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------------------------
Q psy2206 220 DYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------------------------- 272 (430)
Q Consensus 220 d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------------------------- 272 (430)
|++|+++++|+.+++|||+|||||||+++++.+.+++.+++++||+++|++|.
T Consensus 88 ~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~ 167 (489)
T PLN02483 88 DNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVF 167 (489)
T ss_pred CCCceEEecCCCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999999999999987678899999999999999999995
Q ss_pred -------------------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEc
Q psy2206 273 -------------------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVE 303 (430)
Q Consensus 273 -------------------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E 303 (430)
+++|+++|++....++|++|+|+++++|++|
T Consensus 168 ~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve 247 (489)
T PLN02483 168 GMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVE 247 (489)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEEC
Confidence 2778888887666678999999999999999
Q ss_pred CccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHH
Q psy2206 304 GIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTI 383 (430)
Q Consensus 304 ~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li 383 (430)
+++||+|++++|++|+++|++||++||+||||++|.+|++|+|+++++++.+.++||+++||||+||+.|||++++++++
T Consensus 248 ~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~GG~i~~~~~li 327 (489)
T PLN02483 248 GIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELI 327 (489)
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCceEEEcCHHHH
Confidence 99999999999999999999999999999999999999999999998888777899999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCC
Q psy2206 384 DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLEN 419 (430)
Q Consensus 384 ~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~ 419 (430)
+.++....++.++++++|+.+++++++|++++++++
T Consensus 328 ~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g 363 (489)
T PLN02483 328 QYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDG 363 (489)
T ss_pred HHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCcc
Confidence 999987766777878888888889999999876654
No 3
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=5.6e-45 Score=371.81 Aligned_cols=218 Identities=40% Similarity=0.680 Sum_probs=190.5
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+.+.++.+...+.||.+ +.+.+.++.++... | ++++||||||||||++|| .+++++++
T Consensus 7 ~~~~l~~~~~~~~~r~~-----~~~~~~~~~~~~~~--------------~--~~~~nf~SNdYLGLa~~~-~~~~a~~~ 64 (388)
T COG0156 7 LRQALQALKAEGLYRGL-----RALDRRQGLAIRAD--------------G--RKVLNFCSNDYLGLASHP-ELIEAAKA 64 (388)
T ss_pred HHHHHHHHHhhccccch-----hhccccCCcceecC--------------C--ceeEeeeccCcccccCCH-HHHHHHHH
Confidence 44566777788888888 45555555555443 4 889999999999999996 79999999
Q ss_pred HHHHhCCCCCCCCC------------------------------------------------------------------
Q psy2206 259 SVKQSGCALCSPSA------------------------------------------------------------------ 272 (430)
Q Consensus 259 ai~~yG~g~~~sr~------------------------------------------------------------------ 272 (430)
++++||.|+++||+
T Consensus 65 ~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~ 144 (388)
T COG0156 65 AIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSR 144 (388)
T ss_pred HHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCC
Confidence 99999999999997
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++||++|++.. ..++ ++++||+||||||+|+++||++|++|+++|+++|+|||||++|++|+
T Consensus 145 a~~~~f~HnD~~~Le~~l~~~~------~~~~-~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~ 217 (388)
T COG0156 145 AEVRRFKHNDLDHLEALLEEAR------ENGA-RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGP 217 (388)
T ss_pred CcEEEecCCCHHHHHHHHHhhh------ccCC-CceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCC
Confidence 288999998742 1123 57899999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchH
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDE 422 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~ 422 (430)
+|+|+++++|+.+.++||+++||||+||+.|||++++..++++|++.+++++||+++||..+++++++|+++++. .+
T Consensus 218 ~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~---~~ 294 (388)
T COG0156 218 NGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG---PE 294 (388)
T ss_pred CCccHHHHhCCCCccceEEEEEchhhhcccCceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhC---HH
Confidence 999999999998888999999999999999999999999999999999999999999999999999999999755 24
Q ss_pred HHhhhh
Q psy2206 423 GNVRHS 428 (430)
Q Consensus 423 ~~~r~~ 428 (430)
.+++++
T Consensus 295 ~r~~L~ 300 (388)
T COG0156 295 RRERLQ 300 (388)
T ss_pred HHHHHH
Confidence 445444
No 4
>PLN02955 8-amino-7-oxononanoate synthase
Probab=100.00 E-value=5.4e-38 Score=327.33 Aligned_cols=263 Identities=21% Similarity=0.316 Sum_probs=182.2
Q ss_pred cCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccccc-----ccccceeeEEeccccccccccccc
Q psy2206 91 TGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASML-----SKGASKSNILFQAHTNGFANGISK 165 (430)
Q Consensus 91 tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l-----~~~~~~l~~~~~gh~~~~~~~~~~ 165 (430)
+|+.+++|||+|||||||+ +||.+++++++++++||+|+||||++.|+.. ++.++ .+++
T Consensus 98 ~~~~r~~l~FsSndYLGL~-~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA---------------~f~g 161 (476)
T PLN02955 98 KGRFKKLLLFSGNDYLGLS-SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLA---------------DLKK 161 (476)
T ss_pred cCCCceEEEeeccCccCCC-CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHH---------------HHHC
Confidence 4667899999999999999 6999999999999999999999999999862 21111 1111
Q ss_pred cCCccccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCC-EEEEecCCCCCCCccccccCCccceeeecCCCccC
Q psy2206 166 SNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGA-IITIKDRETPDYGWTFKYTGTESTCLNLASYNYLG 244 (430)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~-~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLG 244 (430)
.+...--..||..=..-+..+- -+.+.... ..... | +..+-|.- -
T Consensus 162 ~e~all~sSGy~AN~~~i~aL~--------------~~~~~~~~~~~~~~--------------~--~~d~i~~D--~-- 207 (476)
T PLN02955 162 KEDCLVCPTGFAANMAAMVAIG--------------SVASLLAASGKPLK--------------N--EKVAIFSD--A-- 207 (476)
T ss_pred CCcEEEECChHHHHHHHHHHHh--------------hccccccccccccC--------------C--CCcEEEEe--c--
Confidence 0110000122221000000000 00000000 00000 1 11111211 0
Q ss_pred CCCCcHHHHHHHHHHHHHhC-CCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHH
Q psy2206 245 FGENTGLCTERSKESVKQSG-CALC--SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRL 321 (430)
Q Consensus 245 l~~~~~~v~~a~~~ai~~yG-~g~~--~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~L 321 (430)
..| .-+++.+. ..++-| ...- --..+++|+++|++. +.++++||+||||||+|+++||++|++|
T Consensus 208 -~~H-aSI~dG~~-ls~~~~~a~~~~f~HND~~~Le~~L~~~----------~~~~~~Vv~EgV~SmdGdiapL~eL~~L 274 (476)
T PLN02955 208 -LNH-ASIIDGVR-LAERQGNVEVFVYRHCDMYHLNSLLSSC----------KMKRKVVVTDSLFSMDGDFAPMEELSQL 274 (476)
T ss_pred -cch-HHHHHHHH-hccccCCceEEEeCCCCHHHHHHHHHhC----------CCCceEEEEeCCCCCCCCcCCHHHHHHH
Confidence 112 12233222 111101 1000 001179999999763 1245789999999999999999999999
Q ss_pred HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcH
Q psy2206 322 KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP 401 (430)
Q Consensus 322 a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P 401 (430)
|++||++|||||||++|++|++|+|+++++|+. .++||+++||||+||+.|||++++++++++++..+++++||+++||
T Consensus 275 ~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~GGfi~gs~~~~~~l~~~~~~~ifStalpp 353 (476)
T PLN02955 275 RKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTAIPV 353 (476)
T ss_pred HHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhccCceeecHHHHHHHHHHhCCCCeecccccH
Confidence 999999999999999999999999999999987 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy2206 402 PVAMQILTSMRIIMGL 417 (430)
Q Consensus 402 ~~~aaalaaL~~l~~~ 417 (430)
+.++++++++++++.+
T Consensus 354 ~~aaa~laal~l~~~~ 369 (476)
T PLN02955 354 PMAAAAYAAVVVARKE 369 (476)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999765
No 5
>KOG1359|consensus
Probab=100.00 E-value=3.3e-38 Score=303.73 Aligned_cols=192 Identities=36% Similarity=0.587 Sum_probs=172.0
Q ss_pred cccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCCH-------
Q psy2206 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAP------- 273 (430)
Q Consensus 201 r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~~------- 273 (430)
|+|+|.+++.|.+. |..+.+||||.||||||+.|| +++++.++++++||.|..++|..
T Consensus 50 rVi~s~q~p~i~v~--------------G~~k~ilnFcaNnYLGLsshP-eii~a~~~aleeyGaGlssvrfIcGtq~iH 114 (417)
T KOG1359|consen 50 RVITSRQGPTIQVK--------------GSDKKILNFCANNYLGLSSHP-EIINAGQKALEEYGAGLSSVRFICGTQDIH 114 (417)
T ss_pred eEEeecccceEEEe--------------ccccceeeecccccccccCCh-HHHHHHHHHHHHhCCCccceeEEecchHHH
Confidence 78999999999975 555899999999999999986 78999999999999999999980
Q ss_pred -----------------------------------------------------------------HHHHHHHHHHhhcCC
Q psy2206 274 -----------------------------------------------------------------SSLEAGLQKALLEGQ 288 (430)
Q Consensus 274 -----------------------------------------------------------------~~Le~~L~~~~~~~~ 288 (430)
.+||..|.++
T Consensus 115 k~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLckry~h~dv~~l~~~l~~a----- 189 (417)
T KOG1359|consen 115 KLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCKRYRHVDVFDLEHCLISA----- 189 (417)
T ss_pred HHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHhhhccchhHHHHHHHHHh-----
Confidence 1222222221
Q ss_pred CCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccch
Q psy2206 289 PHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 289 p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa 368 (430)
...+.++|++|++|||||+++||.+|++|+++||++|++||+|++|++|++|+|+.|.+|+. .++||+.+||+|+
T Consensus 190 ----~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm-~~vdiinsTLgKA 264 (417)
T KOG1359|consen 190 ----CKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVM-GDVDIINSTLGKA 264 (417)
T ss_pred ----hhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCC-Ccceehhhhhhhh
Confidence 12267899999999999999999999999999999999999999999999999999999997 6899999999999
Q ss_pred hc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 369 FG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 369 ~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+| +.|||..+++.+++.|+..+++|+||.++||.+...+.+++++++..
T Consensus 265 lGga~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s 314 (417)
T KOG1359|consen 265 LGGASGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS 314 (417)
T ss_pred hcCCCCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhh
Confidence 97 89999999999999999999999999999999999999999998765
No 6
>KOG1360|consensus
Probab=100.00 E-value=1.1e-36 Score=302.55 Aligned_cols=179 Identities=30% Similarity=0.502 Sum_probs=167.3
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------------------------------------- 272 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------------------------------------- 272 (430)
+++-.|||||||||+.|| .|.+|+.+.+++||.|.|++|.
T Consensus 171 k~VtVWCSNDYLgms~Hp-~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLf 249 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHP-EVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLF 249 (570)
T ss_pred CceEEEecCccccccCCh-HHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHH
Confidence 789999999999999996 7899999999999999999998
Q ss_pred ---------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCccc
Q psy2206 273 ---------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIV 313 (430)
Q Consensus 273 ---------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~ 313 (430)
+++||++|+... +...++|..|+|+||+|.++
T Consensus 250 tLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHND~~hL~~lL~~~~---------~svPKivAFEtVhSM~Gavc 320 (570)
T KOG1360|consen 250 TLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSP---------KSVPKIVAFETVHSMDGAVC 320 (570)
T ss_pred HHHHHCCCcEEeccccchHHHHHHhhhcCCcceeeccCCHHHHHHHHHhCC---------CCCCceEEEeeeeccCCCcC
Confidence 388999998741 23466899999999999999
Q ss_pred CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcc
Q psy2206 314 RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVR 393 (430)
Q Consensus 314 ~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~ 393 (430)
||++|++++++||++.++||+|+.|.||+.|.|+.|.-|+- .++||+.|||+|+||..||||+++..++|++|..+.+|
T Consensus 321 pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm-~kvDiIsGTLgKafGcVGGYIAat~~LvDmiRSyAaGF 399 (570)
T KOG1360|consen 321 PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVM-HKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGF 399 (570)
T ss_pred CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcc-hhhhhcccchhhhcccccceehhhhhHHHHHHHhcCce
Confidence 99999999999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 394 SYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 394 ~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+|++++||.+++.+++++++++.++|..
T Consensus 400 IFTTSLPP~vl~GAleaVr~lk~~eg~~ 427 (570)
T KOG1360|consen 400 IFTTSLPPMVLAGALEAVRILKSEEGRV 427 (570)
T ss_pred EEecCCChHHHHhHHHHHHHHhhhhhHH
Confidence 9999999999999999999999887743
No 7
>KOG1358|consensus
Probab=100.00 E-value=8.9e-33 Score=274.64 Aligned_cols=273 Identities=29% Similarity=0.423 Sum_probs=201.0
Q ss_pred ccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccccccccc
Q psy2206 66 VTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGA 145 (430)
Q Consensus 66 i~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l~~~~ 145 (430)
+.++.+.++.+.++ +|+||+|+|||||.. ++++++.|..+|++||+|+||||.++||.--
T Consensus 81 ~e~~~~~~~~i~G~----------------~~~N~aS~NfL~l~~-~~~ike~a~~~lrkyGvGsCGPrGFYGt~Dv--- 140 (467)
T KOG1358|consen 81 LESVMLPHVTIDGK----------------DVLNFASANFLGLIE-NEEIKEEASFTLRKYGVGSCGPRGFYGTIDV--- 140 (467)
T ss_pred cccccCCceEecCc----------------eeecccchhhhhhcc-cHHHHHHHHHHHHHhCCCCcCCCccccccee---
Confidence 46888888888665 899999999999995 8899999999999999999999999999821
Q ss_pred ceeeEEeccccc--cccccccccCCccccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCc
Q psy2206 146 SKSNILFQAHTN--GFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGW 223 (430)
Q Consensus 146 ~~l~~~~~gh~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~ 223 (430)
|.. +-+.++++.++.---..+|+-+.+ . .|.-+..|..+.+++
T Consensus 141 ---------HldlE~~iakF~G~E~aivYs~gF~ti~S------------~------ipafsKrGDIi~~de-------- 185 (467)
T KOG1358|consen 141 ---------HLDLEKRIAKFMGTEDAIVYSYGFSTIES------------A------IPAFSKRGDIIFVDE-------- 185 (467)
T ss_pred ---------ecccHHHHHHhhCCcceeeeccccchhhh------------c------chhhhccCcEEEEeh--------
Confidence 111 112233333332111133332111 1 244456666666553
Q ss_pred cccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEc
Q psy2206 224 TFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVE 303 (430)
Q Consensus 224 ~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E 303 (430)
.+||+ ++...++-+.- +..-....+++||+++.+....-+.+.+.+-.+++||+|
T Consensus 186 ----------~~nfa--------------Iq~GlqlSRS~-i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~E 240 (467)
T KOG1358|consen 186 ----------AVNFA--------------IQKGLQLSRST-ISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVE 240 (467)
T ss_pred ----------hhhHH--------------HHHHHhhhhhe-eEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEE
Confidence 12211 12222222210 001111226788888755321111111112237799999
Q ss_pred CccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHH
Q psy2206 304 GIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTI 383 (430)
Q Consensus 304 ~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li 383 (430)
|+|-++|+++||++|++++.||...||+||.+++|++|++|||+++|+++...++||++++++-++++.|||++|+.-++
T Consensus 241 Gl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~GgFc~G~~~i~ 320 (467)
T KOG1358|consen 241 GLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGFCAGKSFIA 320 (467)
T ss_pred eeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccCceeecceeeE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 384 DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 384 ~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
++.+..+.+|+||.++||+.+.++..++.++..+.
T Consensus 321 ~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p 355 (467)
T KOG1358|consen 321 DHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNP 355 (467)
T ss_pred eeeeccccceeeeccCchhhhhhHHHHHHHHhhCc
Confidence 99999999999999999999999999999987664
No 8
>PLN02822 serine palmitoyltransferase
Probab=99.98 E-value=1.5e-31 Score=282.08 Aligned_cols=195 Identities=33% Similarity=0.543 Sum_probs=166.8
Q ss_pred ccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------
Q psy2206 202 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------- 272 (430)
Q Consensus 202 ~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------- 272 (430)
++.+++|+++++. | +++|||+|+|||||..|+ .+++++.+++++||.++|++|.
T Consensus 95 ~~~~~~G~~i~~~--------------G--~~~id~~s~~~lgl~~~~-~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~ 157 (481)
T PLN02822 95 VLESAAGPHTIIN--------------G--KDVVNFASANYLGLIGNE-KIKESCTSALEKYGVGSCGPRGFYGTIDVHL 157 (481)
T ss_pred ceecCCCCeEEEC--------------C--ceEEEeECCCcCCCCCCH-HHHHHHHHHHHHhCCCCcccCccccCHHHHH
Confidence 5677888888853 5 899999999999999875 8999999999999999998876
Q ss_pred -------------------------------------------------------------------HHHHHHHHHHHhh
Q psy2206 273 -------------------------------------------------------------------PSSLEAGLQKALL 285 (430)
Q Consensus 273 -------------------------------------------------------------------~~~Le~~L~~~~~ 285 (430)
.++|+..+++...
T Consensus 158 ~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~ 237 (481)
T PLN02822 158 DCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTA 237 (481)
T ss_pred HHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 1456666654210
Q ss_pred cCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCc
Q psy2206 286 EGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTY 365 (430)
Q Consensus 286 ~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~Tl 365 (430)
.. +..+..+++||+|++|+|+|++.||++|+++|++||++||+||+|++|++|++|+|+++++++.+.++||+++||
T Consensus 238 ~~---~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~ 314 (481)
T PLN02822 238 EN---KRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAM 314 (481)
T ss_pred hh---cccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecc
Confidence 00 000112479999999999999999999999999999999999999999999999999999998656789999999
Q ss_pred cchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 366 TKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 366 SKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
||++|++|||++++++++++++...++++|++++||+.+++++++|+.+++
T Consensus 315 sKalg~~GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~ 365 (481)
T PLN02822 315 GHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLED 365 (481)
T ss_pred hhhhhhCCeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988888899998999999999999998865
No 9
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.97 E-value=6.7e-31 Score=270.09 Aligned_cols=207 Identities=30% Similarity=0.489 Sum_probs=168.8
Q ss_pred hHHHHHHHHhhcccccccccCcccccCCCC-----EEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHH
Q psy2206 180 YEKFVLFYSRYVYRRIVDCFNRPVTSVPGA-----IITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTE 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~-----~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~ 254 (430)
.+.+++...+++||.. +++.+.+++ ++...+ | ++++||+|||||||+.|| .+++
T Consensus 8 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~sn~ylgl~~~p-~v~~ 66 (402)
T TIGR01821 8 NKEIDKLHLEGRYRVF-----ADLERQAGEFPFAQWHRPDG-------------A--KDVTVWCSNDYLGMGQHP-EVLQ 66 (402)
T ss_pred HHHHHHHHHcCCCcee-----eeccccccCCCcceEEecCC-------------C--eeEEEeEccCcCCCCCCH-HHHH
Confidence 3467788889999988 566655543 222221 3 789999999999999986 7999
Q ss_pred HHHHHHHHhCCCCCCCCC-------H------------------------------------------------------
Q psy2206 255 RSKESVKQSGCALCSPSA-------P------------------------------------------------------ 273 (430)
Q Consensus 255 a~~~ai~~yG~g~~~sr~-------~------------------------------------------------------ 273 (430)
++.+++++||.+++++|. .
T Consensus 67 a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~ 146 (402)
T TIGR01821 67 AMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIE 146 (402)
T ss_pred HHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHH
Confidence 999999999998887765 0
Q ss_pred -----------------HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 274 -----------------SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 274 -----------------~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
++|+++++.. .+.++++|++|+++||+|++.|+++|+++|++||++||+||||+
T Consensus 147 ~~~~~g~~~~~~~~~d~~~l~~~l~~~---------~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (402)
T TIGR01821 147 GIRHSGAEKFIFRHNDVAHLEKLLQSV---------DPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHA 217 (402)
T ss_pred HHHHcCCeEEEECCCCHHHHHHHHHhc---------cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccc
Confidence 1222222210 11246799999999999999999999999999999999999999
Q ss_pred ccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 337 IGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 337 ~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+|++|+.|.|+.+++++. +++||+++||||+||++|||+++++++++.++....++.|+++.+|+.+++++++|+.+++
T Consensus 218 ~G~~g~~g~g~~~~~~~~-~~~div~~t~sKa~g~~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~ 296 (402)
T TIGR01821 218 VGLYGPRGGGIAERDGLM-HRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKE 296 (402)
T ss_pred ccccCCCCCccchhccCC-CCCeEEEEechhhhccCCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhc
Confidence 999999999987777764 3569999999999999999999999999999987777788888999999999999999876
Q ss_pred c
Q psy2206 417 L 417 (430)
Q Consensus 417 ~ 417 (430)
.
T Consensus 297 ~ 297 (402)
T TIGR01821 297 S 297 (402)
T ss_pred C
Confidence 5
No 10
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=268.59 Aligned_cols=257 Identities=21% Similarity=0.335 Sum_probs=170.9
Q ss_pred EEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccccccccceeeEEeccccccccccccccCCccccCCCCc
Q psy2206 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFANGISKSNGLLSSNGGYP 177 (430)
Q Consensus 98 lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l~~~~~~l~~~~~gh~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
|||+|||||||+ +||.+++++++++++||+|+||||..+|++-... ....-+..+++.+...--..|+.
T Consensus 1 ~~f~s~dyLgl~-~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~----------~LE~~lA~~~g~e~al~~~sG~~ 69 (392)
T PLN03227 1 LNFATHDFLSTS-SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHL----------ELEQCMAEFLGTESAILYSDGAS 69 (392)
T ss_pred CCCcCcCccCCC-CCHHHHHHHHHHHHHhCCCCcccccccCChHHHH----------HHHHHHHHHhCCCcEEEecCcHH
Confidence 699999999999 6999999999999999999999999988762100 00000111111111100012222
Q ss_pred hhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHH
Q psy2206 178 DLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSK 257 (430)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~ 257 (430)
....-+. ....+|..|.+.+ + .|+ .+...+
T Consensus 70 a~~~~i~------------------~l~~~GD~Vl~~~------------------------~------~h~-s~~~~~- 99 (392)
T PLN03227 70 TTSSTVA------------------AFAKRGDLLVVDR------------------------G------VNE-ALLVGV- 99 (392)
T ss_pred HHHHHHH------------------HhCCCCCEEEEec------------------------c------ccH-HHHHHH-
Confidence 2111000 1123566665442 0 111 122221
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHhhcC-CCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 258 ESVKQSGCALCSPSAPSSLEAGLQKALLEG-QPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 258 ~ai~~yG~g~~~sr~~~~Le~~L~~~~~~~-~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
.+.+..+..-....++++++.++...... +.+.....++++|++|+++||+|++.||++|+++|++||++||+||+|+
T Consensus 100 -~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 100 -SLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred -HHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccc
Confidence 11111111111112466666654421000 0000001257899999999999999999999999999999999999999
Q ss_pred ccccCCCCCccceecCCCC-CCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 337 IGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 337 ~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+|++|++|+|.++++|+.| .++||++.|+||++|..||++++++++++.++.....+.|++++||+.+++++++++.+.
T Consensus 179 ~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~ 258 (392)
T PLN03227 179 FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGEL 258 (392)
T ss_pred ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999864 577999999999999999999999999999887677778888888988888888886654
Q ss_pred c
Q psy2206 416 G 416 (430)
Q Consensus 416 ~ 416 (430)
+
T Consensus 259 ~ 259 (392)
T PLN03227 259 A 259 (392)
T ss_pred c
Confidence 3
No 11
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.97 E-value=6.3e-30 Score=263.11 Aligned_cols=212 Identities=32% Similarity=0.513 Sum_probs=168.7
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
+.++.....++||.. +++...+++++.... +...|+.++++||+|||||||+.|| .+++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~s~dylgl~~~p-~v~~a~~~~~ 73 (407)
T PRK09064 9 NALDRLKAEGRYRVF-----ADLERIAGRFPYATW---------RRPDGGEREVTVWCSNDYLGMGQHP-KVIEAMIEAL 73 (407)
T ss_pred HHHHHHHHcCCCcee-----eecccccCCCCceEE---------EeecCCCceEEEEECCCCcCCCCCH-HHHHHHHHHH
Confidence 456777888999877 566665554321100 0011212789999999999999985 7999999999
Q ss_pred HHhCCCCCCCCC--------------------------------------------------------------------
Q psy2206 261 KQSGCALCSPSA-------------------------------------------------------------------- 272 (430)
Q Consensus 261 ~~yG~g~~~sr~-------------------------------------------------------------------- 272 (430)
++||.+++++|.
T Consensus 74 ~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~ 153 (407)
T PRK09064 74 DRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSR 153 (407)
T ss_pred HHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcC
Confidence 999998877765
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++||++++.. .+.++++|++|+++||+|++.|+++|+++|++||++||+||||++|++|+
T Consensus 154 ~~~~~~~~~d~~~le~~l~~~---------~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~ 224 (407)
T PRK09064 154 CEKHIFRHNDVAHLEELLAAA---------DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGP 224 (407)
T ss_pred CcEEEECCCCHHHHHHHHHhc---------cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 02344443321 01245799999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+|.|++++.++. +++||+++||||+||+.|||+++++++++.++....++.++++.+|+.+++++++++.+++.
T Consensus 225 ~g~g~~~~~~~~-~~~div~~t~sKa~g~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~ 298 (407)
T PRK09064 225 RGGGIAERDGLM-DRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKES 298 (407)
T ss_pred CCCChHHhcCCC-CCCeEEEEecchhhhccCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcC
Confidence 999987777764 35699999999999999999999999999998877777788889999999999999998765
No 12
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.97 E-value=6.9e-30 Score=263.26 Aligned_cols=211 Identities=30% Similarity=0.494 Sum_probs=170.4
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
+.++....+++||.. +++.+.+|+++.+.-... + .| +++|||+|||||||++|| ++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-------~~--~~~~~~~sn~ylgl~~~p-~v~~a~~~~~ 72 (406)
T PRK13393 9 RQLDGLRREGRYRVF-----ADLERQAGAFPRATHHGP-D-------GP--REVTVWCSNDYLGMGQHP-AVLAAMHEAL 72 (406)
T ss_pred HHHHHHHHcCCCcee-----eeccccCCCcceeEEecc-C-------CC--ccEEEeecccccCCCCCH-HHHHHHHHHH
Confidence 467778889999977 577777776543210000 0 12 789999999999999985 7999999999
Q ss_pred HHhCCCCCCCCC-------H------------------------------------------------------------
Q psy2206 261 KQSGCALCSPSA-------P------------------------------------------------------------ 273 (430)
Q Consensus 261 ~~yG~g~~~sr~-------~------------------------------------------------------------ 273 (430)
++||.++++++. .
T Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g 152 (406)
T PRK13393 73 DTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSR 152 (406)
T ss_pred HHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcC
Confidence 999998877765 0
Q ss_pred -----------HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 274 -----------SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 274 -----------~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
++|+++++.. .+.++++|++|+|+||+|++.|+++|.++|++|++++|+||+|++|++|+
T Consensus 153 ~~~~~~~~~d~~~l~~~l~~~---------~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~ 223 (406)
T PRK13393 153 AEKRIFRHNDPADLERKLSDL---------DPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGP 223 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhc---------cCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCC
Confidence 2222222210 01245789999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+|.|+++++++. .++||+++||||++|++|||+++++++++.++...+++.++++.+|+.+++++++|+.+++.
T Consensus 224 ~G~g~~~~~~~~-~~~~i~~~tlsKa~g~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~ 297 (406)
T PRK13393 224 RGGGIAEREGLA-DRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKAS 297 (406)
T ss_pred CCCchhhhcCCC-CCCeEEEEeCchhhcccCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhC
Confidence 999988877776 35789999999999999999999999999999877777788889999999999999988654
No 13
>KOG1357|consensus
Probab=99.96 E-value=1.2e-30 Score=263.34 Aligned_cols=190 Identities=38% Similarity=0.625 Sum_probs=151.2
Q ss_pred cccccceeeEEeccccccccccccccCCc--cccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCC
Q psy2206 141 LSKGASKSNILFQAHTNGFANGISKSNGL--LSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRET 218 (430)
Q Consensus 141 l~~~~~~l~~~~~gh~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~ 218 (430)
|..+.+|++++++||++||+++++..... ...++||+||+++||+||+|++|+|++|||+|||+++||++|+++||++
T Consensus 43 l~ty~~y~~l~~~ghvrd~~~~~f~~~~~~~~~~~~g~~ply~~Fe~FY~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S 122 (519)
T KOG1357|consen 43 LATYLSYLLLFVFGHVRDFFGKIFFVKKYKKDNEMDGYAPLYSSFESFYSRRIYRRIRDCFERPICSVPGAWVDLMDRVS 122 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheehhhhcccccccCccchhhhHHHHHHHHHHHHHhHhhcCCCcCCCCceEEeeeeec
Confidence 45566888999999999999999876544 4456999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHHHhhcCCCCC
Q psy2206 219 PDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSSLEAGLQKALLEGQPHS 291 (430)
Q Consensus 219 ~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~Le~~L~~~~~~~~p~~ 291 (430)
+|+||+|+|+|+..++||++|||||||+++...|.+++.+++++||.+.|+||. -..||++.++. .|+|
T Consensus 123 ~D~n~tfk~tG~~~~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f--~g~e-- 198 (519)
T KOG1357|consen 123 DDYNWTFKYTGTRSRCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARF--LGVE-- 198 (519)
T ss_pred cCCCceEEeccceeeeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHh--cCCc--
Confidence 999999999999989999999999999999999999999999999999999998 36788887764 2332
Q ss_pred CCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecc-ccccccCCCCCc
Q psy2206 292 GKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA-HSIGALGPTGRG 346 (430)
Q Consensus 292 ~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEA-h~~G~lG~~GrG 346 (430)
.++|+.=| |+..-.. +-.|+.+ +.++|.||- |+..++|....|
T Consensus 199 -----~a~vF~mG-f~TNs~~-----~p~l~~~-gsLIiSDelNHaSi~~GaRLSg 242 (519)
T KOG1357|consen 199 -----DAIVFSMG-FATNSMN-----IPSLLGK-GSLIISDELNHASLITGARLSG 242 (519)
T ss_pred -----ceEEEecc-ccccccC-----cceeecC-CcceeeccccchheeccccccC
Confidence 23443333 2211111 1222333 678999994 444445654433
No 14
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.95 E-value=1e-27 Score=247.27 Aligned_cols=221 Identities=28% Similarity=0.449 Sum_probs=168.0
Q ss_pred hHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHH
Q psy2206 180 YEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKES 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~a 259 (430)
.+.+++...+++||.. +++.+.+++.+.+.- . ..-.| +++++|+|||||||+.|| .+++++.++
T Consensus 9 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~------~~~~~--~~~~~~~sn~yl~l~~~p-~v~~a~~~~ 72 (410)
T PRK13392 9 DAALAQLHQEGRYRVF-----ADLEREAGRFPRARD--H------GPDGP--RRVTIWCSNDYLGMGQHP-DVIGAMVDA 72 (410)
T ss_pred HHHHHHHHHcCCCccc-----cccccccCccceeee--c------ccCCC--ceEEEEECCCccCCCCCH-HHHHHHHHH
Confidence 3467778889999877 567776665443210 0 00013 789999999999999885 899999999
Q ss_pred HHHhCCCCCCCCC-------HHHHHHHHHHH----------------------h------------------------hc
Q psy2206 260 VKQSGCALCSPSA-------PSSLEAGLQKA----------------------L------------------------LE 286 (430)
Q Consensus 260 i~~yG~g~~~sr~-------~~~Le~~L~~~----------------------~------------------------~~ 286 (430)
+++||.++++++. ..+||+.|.+. . ..
T Consensus 73 ~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~ 152 (410)
T PRK13392 73 LDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRS 152 (410)
T ss_pred HHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHc
Confidence 9999988777765 01121111100 0 00
Q ss_pred CCC-----C-----------CCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 287 GQP-----H-----------SGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 287 ~~p-----~-----------~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
|.+ . .....++++|++|+++||+|.+.|+++|+++|++||++||+||||+.|++|++|.|++++
T Consensus 153 g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~ 232 (410)
T PRK13392 153 GAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAER 232 (410)
T ss_pred CCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhh
Confidence 000 0 000125679999999999999999999999999999999999999999999988888766
Q ss_pred cCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.++. +++||+++||||+||++|||+++++++++.++....++.++++++|+.++++.++|+.++..
T Consensus 233 ~~~~-~~~div~~tlsK~~g~~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~ 298 (410)
T PRK13392 233 DGLM-DRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTS 298 (410)
T ss_pred ccCC-CCCcEEEEEChHhhhcccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcC
Confidence 6654 45789999999999999999999999999999877777788888888888899999987654
No 15
>PLN02483 serine palmitoyltransferase
Probab=99.95 E-value=1.5e-28 Score=259.85 Aligned_cols=107 Identities=38% Similarity=0.619 Sum_probs=102.9
Q ss_pred cccCCccchHHHHHHHHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCCh
Q psy2206 34 MVKFGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTG 113 (430)
Q Consensus 34 ~~~~~~~pl~~~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~ 113 (430)
..++||+||+++||+||+||||+|++|||+|||+|+||++|+|++|+++|+||+|++||++++||||+|||||||+++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~ 118 (489)
T PLN02483 39 SNLQGYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADE 118 (489)
T ss_pred ccccCCCccccCHHHHHHHHhhhhcccccCCCCCCCCCCeEEEEEeecCCCCceEEecCCCceEEEeecCCccCcCCCCH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred hhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 114 LCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 114 ~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.|.+++++++++||+++||||...|+.
T Consensus 119 ~~~~~~~~ai~~~g~~~~~sr~~~g~~ 145 (489)
T PLN02483 119 YCTPRVIESLKKYSASTCSSRVDGGTT 145 (489)
T ss_pred HHHHHHHHHHHHhCCCCCccccccCCc
Confidence 999999999999999999999988865
No 16
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.94 E-value=8.7e-26 Score=230.56 Aligned_cols=209 Identities=33% Similarity=0.553 Sum_probs=170.4
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+...++++...++|+.. +++.+.+|+++.+.+ | +++|||+|||||||+.+| ++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------------g--~~~i~~~~~~~lg~~~~~-~v~~~~~~ 63 (393)
T TIGR01822 5 LAAELESIREAGLFKSE-----RIITSPQGADIRVAD-------------G--REVLNFCANNYLGLSSHP-DLIQAAKD 63 (393)
T ss_pred HHHHHHHHHHcCCCCcc-----cccccCCCceEEecC-------------C--ceEEEeeCCCccccCCCH-HHHHHHHH
Confidence 33568888889999965 789999999998743 5 889999999999999875 89999999
Q ss_pred HHHHhCCCCCCCCC------------------------------------------------------------------
Q psy2206 259 SVKQSGCALCSPSA------------------------------------------------------------------ 272 (430)
Q Consensus 259 ai~~yG~g~~~sr~------------------------------------------------------------------ 272 (430)
++++||.+.++++.
T Consensus 64 ~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~ 143 (393)
T TIGR01822 64 ALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCK 143 (393)
T ss_pred HHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcC
Confidence 99999988777773
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++|++.+++.. . ...++++|++++++||+|.+.|+++|+++|++||++||+||+|++|++|.
T Consensus 144 ~~~~~~~~~d~~~l~~~i~~~~---~----~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~ 216 (393)
T TIGR01822 144 AKRYRYANNDMADLEAQLKEAR---A----AGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGP 216 (393)
T ss_pred CceEEeCCCCHHHHHHHHHhhh---h----cCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCC
Confidence 144444444321 0 01157799999999999999999999999999999999999999999888
Q ss_pred CCCccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+|++..+..++. .++||+++||||+++ ..|||+++++++++.++....++.++++.+|..+++++++++.+++
T Consensus 217 ~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 290 (393)
T TIGR01822 217 TGRGSHELCGVM-GRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEA 290 (393)
T ss_pred CCCchHHhcCCC-CCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc
Confidence 888876666665 357999999999996 4579999999999999876666777777788877778889887743
No 17
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.93 E-value=7.9e-25 Score=223.17 Aligned_cols=176 Identities=26% Similarity=0.457 Sum_probs=147.1
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHh-------CCCCCCCCC--------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQS-------GCALCSPSA-------------------------------- 272 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~y-------G~g~~~sr~-------------------------------- 272 (430)
.++|||+||||||++.+| .+++++.+++++| |++.+++|+
T Consensus 4 ~~~~~~~s~~YL~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~ 82 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSD-TLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYM 82 (370)
T ss_pred CceEEeECCCccCCCCCH-HHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHH
Confidence 579999999999999996 6899999999999 688999994
Q ss_pred --------------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC
Q psy2206 273 --------------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM 308 (430)
Q Consensus 273 --------------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm 308 (430)
+++|+++|++.. ..+.++++|++++++||
T Consensus 83 a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-------~~~~~~~~v~v~~v~s~ 155 (370)
T PRK05937 83 ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCR-------QRSFGRIFIFVCSVYSF 155 (370)
T ss_pred HHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHhhh-------ccCCCcEEEEEecCCCC
Confidence 155666665421 00124668889999999
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHh
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~ 388 (430)
+|++.|+++|+++|++||++|+|||||+.|.+|.+|+|++..++.. +.++++.||||++|..|+.+++.+++++.+..
T Consensus 156 ~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~--~~~~~~~tlsK~~g~~G~~vl~~~~~~~~~~~ 233 (370)
T PRK05937 156 KGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYE--NFYAVLVTYSKALGSMGAALLSSSEVKQDLML 233 (370)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC--CCcEEEEechhhhhcCceEEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999987767653 34677899999999999888888888887776
Q ss_pred cCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 389 NSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 389 ~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
...++.++++.+|+.++++.++++.++++
T Consensus 234 ~~~~~~~s~~~~~~~~~a~~aal~~l~~~ 262 (370)
T PRK05937 234 NSPPLRYSTGLPPHLLISIQVAYDFLSQE 262 (370)
T ss_pred hCCCCeecCCCCHHHHHHHHHHHHHHHhC
Confidence 56678888888899888888999998654
No 18
>PRK07179 hypothetical protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=221.96 Aligned_cols=172 Identities=21% Similarity=0.423 Sum_probs=142.6
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------H-------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------P------------------------------- 273 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~------------------------------- 273 (430)
+.++||+|||||||++|| ++++++.+++++||.+.+.++. .
T Consensus 54 ~~~~~~~~~~YL~l~~~p-~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~ 132 (407)
T PRK07179 54 PDAIILQSNDYLNLSGHP-DIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQ 132 (407)
T ss_pred CcEEEeecCCccCCCCCH-HHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence 789999999999999985 8999999999999876544332 1
Q ss_pred --------------------------------------HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCH
Q psy2206 274 --------------------------------------SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL 315 (430)
Q Consensus 274 --------------------------------------~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L 315 (430)
++|+++|++ ..+++|++|+++||+|.+.|+
T Consensus 133 ~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------------~~~~lV~v~~v~n~tG~i~pl 200 (407)
T PRK07179 133 TIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQIER------------HGPGIIVVDSVYSTTGTIAPL 200 (407)
T ss_pred HhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecCCCHHHHHHHHHh------------cCCeEEEECCCCCCCCccccH
Confidence 222222221 135689999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccc
Q psy2206 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY 395 (430)
Q Consensus 316 ~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~ 395 (430)
++|+++|++||++||+||+|+.|.+|++|+|+++.+++. ..+|++++|+||++|..+|++++++++++.+.....+..+
T Consensus 201 ~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~~G~l~~~~~~~~~~~~~~~~~~~ 279 (407)
T PRK07179 201 ADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIF 279 (407)
T ss_pred HHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhccCeEEEeCHHHHHHHHHhCcCeee
Confidence 999999999999999999999999999999888777775 3679999999999998899999999999998876656667
Q ss_pred cCCCcHHHHHHHHHHHHHHHcc
Q psy2206 396 ATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 396 s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+++.+|..++++.++++.+...
T Consensus 280 ~~t~~~~~~aa~~aal~~~~~~ 301 (407)
T PRK07179 280 SSTLLPHEIAGLEATLEVIESA 301 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC
Confidence 7777888888788889887554
No 19
>PRK07505 hypothetical protein; Provisional
Probab=99.92 E-value=4.8e-24 Score=219.61 Aligned_cols=223 Identities=24% Similarity=0.360 Sum_probs=163.6
Q ss_pred HHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhC-C
Q psy2206 187 YSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSG-C 265 (430)
Q Consensus 187 ~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG-~ 265 (430)
..+..|+|.+|||.+|+.+.|...+... ..+.+-.+.+| +++|||+|++||||..| |++++|+.+++++|| .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~G~~~~d~~g--~~~ld~~s~~~lgl~~~-p~v~~A~~~~l~~~g~~ 79 (402)
T PRK07505 7 NNKKRINRAEKFWDAAYDEGLNGLTVGE----REGILITLADG--HTFVNFVSCSYLGLDTH-PAIIEGAVDALKRTGSL 79 (402)
T ss_pred HHHHHHHhhHHHHHHHHhcccccceeec----cCCccEEecCC--ceEEEeecCCccCCCCC-HHHHHHHHHHHHHhCCC
Confidence 4677899999999999888776643322 24445555668 88999999999999555 589999999999998 5
Q ss_pred CCCCCCC------HHHHHH----------------------HHHHHhh---c-CCCC-----------------------
Q psy2206 266 ALCSPSA------PSSLEA----------------------GLQKALL---E-GQPH----------------------- 290 (430)
Q Consensus 266 g~~~sr~------~~~Le~----------------------~L~~~~~---~-~~p~----------------------- 290 (430)
+.++++. ..+|++ +|+-... . +.+.
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~ 159 (402)
T PRK07505 80 HLSSSRTRVRSQILKDLEEALSELFGASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADET 159 (402)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCC
Confidence 5554432 111211 1110000 0 0000
Q ss_pred -----CC----------CCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCC-
Q psy2206 291 -----SG----------KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGI- 353 (430)
Q Consensus 291 -----~~----------~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~- 353 (430)
.+ .+..+.+||+|++++ +|.+.|+++|.++|++||++||+||+|+.+.+|++|.+.. ++++.
T Consensus 160 ~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~-~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~ 238 (402)
T PRK07505 160 EVETIDHNDLDALEDICKTNKTVAYVADGVYS-MGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYR 238 (402)
T ss_pred eEEEeCCCCHHHHHHHHhcCCCEEEEEecccc-cCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCC
Confidence 00 012356888998875 5999999999999999999999999999888899888764 56665
Q ss_pred CCCCccEEEeCccchhccccceee-cCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 354 DPREVDILMGTYTKSFGSMGGYVA-GSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 354 ~~~~~dIv~~TlSKa~G~~GG~v~-gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
.+ +.+|+++||||++|+.||+++ +++++++.++....+++|+.+++++.+++++++++++.++.
T Consensus 239 ~~-d~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~ 303 (402)
T PRK07505 239 LN-ERTIIAASLGKAFGASGGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEE 303 (402)
T ss_pred CC-CCeEEEEechhhhhccCeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccC
Confidence 33 557889999999998899986 58899999988777888888888889999999998776543
No 20
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.89 E-value=3.3e-22 Score=203.48 Aligned_cols=204 Identities=33% Similarity=0.605 Sum_probs=162.3
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
+.++..+.+++|.+. +.+.++.|.+|+ .+ | +++|||++++|||+..++ .+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~-----~~~~~~~g~~~~-~~-------------g--~~~id~~~~~~~g~~~~~-~~~~a~~~~~ 60 (385)
T TIGR01825 3 QDLNGLKENGLYISI-----RVLESAQGPRVR-VN-------------G--KEVINLSSNNYLGFADHP-RLKEAAAQAI 60 (385)
T ss_pred hHHHHHHHcCCcccc-----cccccCCCceEE-EC-------------C--ceEEEeeccCccCCCCCH-HHHHHHHHHH
Confidence 567788888998855 678999999999 43 5 889999999999998775 7899999999
Q ss_pred HHhCCCCCCCC-------C-------------------------------------------------------------
Q psy2206 261 KQSGCALCSPS-------A------------------------------------------------------------- 272 (430)
Q Consensus 261 ~~yG~g~~~sr-------~------------------------------------------------------------- 272 (430)
++|+...+..+ +
T Consensus 61 ~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~ 140 (385)
T TIGR01825 61 QQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKAT 140 (385)
T ss_pred HHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCc
Confidence 98876433211 1
Q ss_pred --------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCC
Q psy2206 273 --------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 --------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G 344 (430)
++++++.|++.. ..++++|+++++++++|.+.|+++|.++|++||+++|+||+|+.|+++.+|
T Consensus 141 ~~~~~~~d~~~l~~~l~~~~---------~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~ 211 (385)
T TIGR01825 141 KKIYKHADMDDLDRVLRENP---------SYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAG 211 (385)
T ss_pred eEEeCCCCHHHHHHHHHhhc---------cCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCC
Confidence 134444444320 124678999999999999999999999999999999999999988888777
Q ss_pred CccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 345 RGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 345 rG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
.+.+.++++. .++||+++||||++|+.|||+++++++++.+......+.+++..+|+.++++.++++.+.+
T Consensus 212 ~~~~~~~~~~-~~~~i~~~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 282 (385)
T TIGR01825 212 RGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQR 282 (385)
T ss_pred CccHhhcCCC-cCCcEEEEeccHHhhcCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc
Confidence 6666666665 4679999999999999999999999999998876555556666777777888888887754
No 21
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.89 E-value=3.6e-22 Score=202.29 Aligned_cols=205 Identities=33% Similarity=0.513 Sum_probs=160.7
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
..+.+....++|+.+ +++.++.|++|+. + | +++|||++|+++|+..+| .+++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~-~-------------g--~~~id~~~~~~~g~~~~~-~v~~a~~~~~ 66 (385)
T PRK05958 9 AALAQRRAAGLYRSL-----RPREGGAGRWLVV-D-------------G--RRMLNFASNDYLGLARHP-RLIAAAQQAA 66 (385)
T ss_pred HHHHHHHHcCCCccc-----cccccCCCceeEe-C-------------C--ceEEEeeCCCcccCCCCH-HHHHHHHHHH
Confidence 345556677899999 7899999999996 3 5 899999999999997664 7999999999
Q ss_pred HHhCCCCCCCCC--------------------------------------------------------------------
Q psy2206 261 KQSGCALCSPSA-------------------------------------------------------------------- 272 (430)
Q Consensus 261 ~~yG~g~~~sr~-------------------------------------------------------------------- 272 (430)
.+|+.+.+.++.
T Consensus 67 ~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~ 146 (385)
T PRK05958 67 RRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRAR 146 (385)
T ss_pred HhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCc
Confidence 998865443331
Q ss_pred --------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCC
Q psy2206 273 --------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 --------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G 344 (430)
+++++++++.. +.++++|+++++++++|.+.++++|+++|++||++||+||+|+.|+++.+|
T Consensus 147 ~~~~~~~d~~~l~~~i~~~----------~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g 216 (385)
T PRK05958 147 VRRYPHNDVDALEALLAKW----------RAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQG 216 (385)
T ss_pred eEEeCCCCHHHHHHHHHhc----------cCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCC
Confidence 03333333220 013678999999999999999999999999999999999999988888777
Q ss_pred CccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 345 RGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 345 rG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.+....+++.....+|+++||||+||+.|||+++++++++.+......+.++++.+|.+++++.++|+.+...
T Consensus 217 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~ 289 (385)
T PRK05958 217 RGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRRE 289 (385)
T ss_pred CchHHhhCCCCCCceEEEEechhhcccCCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcC
Confidence 6655444443334468899999999999999999999999887655566667778888888888999887653
No 22
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.89 E-value=3.4e-22 Score=200.13 Aligned_cols=190 Identities=38% Similarity=0.682 Sum_probs=150.3
Q ss_pred cccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC--------
Q psy2206 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------- 272 (430)
Q Consensus 201 r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------- 272 (430)
||+.+++|+++... | +++|||++||+||+..++ .+++++.+++++|+.+.++++.
T Consensus 1 ~~~~~~~~~~~~~~--------------g--~~~id~~~~~~~g~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~ 63 (360)
T TIGR00858 1 RPLDRGPGPEVVRD--------------G--RRLLNFSSNDYLGLASHP-EVIQAAQQGAEQYGAGSTASRLVSGNSPLH 63 (360)
T ss_pred CCcccCCCCeEEEC--------------C--ceEEecccCCcccCCCCH-HHHHHHHHHHHhcCCCCCCcCcccCCcHHH
Confidence 58889999999854 5 889999999999998775 7899999999998865433221
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHh
Q psy2206 273 --------------------------------------------------------------------PSSLEAGLQKAL 284 (430)
Q Consensus 273 --------------------------------------------------------------------~~~Le~~L~~~~ 284 (430)
+++|++.+++.
T Consensus 64 ~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~- 142 (360)
T TIGR00858 64 EELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKN- 142 (360)
T ss_pred HHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHc-
Confidence 02333333221
Q ss_pred hcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeC
Q psy2206 285 LEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGT 364 (430)
Q Consensus 285 ~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~T 364 (430)
...++++|+++++++++|.+.|+++|+++|++||++||+||+|+.|.++..+.+....+++.+++.||+++|
T Consensus 143 --------~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s 214 (360)
T TIGR00858 143 --------RGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGT 214 (360)
T ss_pred --------ccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEe
Confidence 001467999999999999999999999999999999999999998888766666666666655677999999
Q ss_pred ccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 365 YTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 365 lSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
|||+||+.|||+++++++++.+......+.++++.++.+++++.++++.+..
T Consensus 215 ~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 266 (360)
T TIGR00858 215 LSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQE 266 (360)
T ss_pred chhhhhccCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988765555555666778877788888887754
No 23
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.87 E-value=8.1e-21 Score=193.39 Aligned_cols=211 Identities=35% Similarity=0.587 Sum_probs=161.1
Q ss_pred chhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHH
Q psy2206 177 PDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERS 256 (430)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~ 256 (430)
..|-+-++.+..++++++. ..+..++|.++++.+ | +++|||++++|+|+..+ +.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------------g--~~~i~l~~~~~~~~~~~-~~i~~a~ 65 (397)
T PRK06939 7 AQLREELEEIKAEGLYKEE-----RVITSPQGADITVAD-------------G--KEVINFCANNYLGLANH-PELIAAA 65 (397)
T ss_pred HHHHHHHHHHHHcCCCccc-----ccccCCCCceEEecC-------------C--CeEEEeeccCccccCCC-HHHHHHH
Confidence 3445567888888888754 356788999998754 6 88999999999999976 4789999
Q ss_pred HHHHHHhCCCCCCCCC----------------------------------------------------------------
Q psy2206 257 KESVKQSGCALCSPSA---------------------------------------------------------------- 272 (430)
Q Consensus 257 ~~ai~~yG~g~~~sr~---------------------------------------------------------------- 272 (430)
++++++++.+.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~ 145 (397)
T PRK06939 66 KAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRL 145 (397)
T ss_pred HHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHh
Confidence 9999887654322211
Q ss_pred ------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc
Q psy2206 273 ------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL 340 (430)
Q Consensus 273 ------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l 340 (430)
+++|++.+++... ...++++|+++++++++|.+.++++|+++|++||++||+||+|++|++
T Consensus 146 ~~~~~~~~~~~d~~~l~~~i~~~~~-------~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~ 218 (397)
T PRK06939 146 CKAKRYRYANNDMADLEAQLKEAKE-------AGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFV 218 (397)
T ss_pred cCCceEEeCCCCHHHHHHHHHhhhc-------cCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCc
Confidence 1344444433210 011567899999999999999999999999999999999999988877
Q ss_pred CCCCCccceecCCCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 341 GPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 341 G~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+..|.+....+++. .++||+++||||++ |..|||+++++++++.++.....+.++++.+|..+++++++++.+..
T Consensus 219 ~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 294 (397)
T PRK06939 219 GENGRGTVEHFGVM-DRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEE 294 (397)
T ss_pred CCCCCCHHHHcCCC-CCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc
Confidence 76665555555654 35789999999999 67789999999999999876555666667777777778888888753
No 24
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.86 E-value=7.2e-21 Score=190.26 Aligned_cols=175 Identities=45% Similarity=0.759 Sum_probs=136.2
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------------------------------------- 272 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------------------------------------- 272 (430)
+.+||||||||||+++|| +++++.++++++|+.+.++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~ 79 (349)
T cd06454 1 KKVLNFCSNDYLGLANHP-EVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLS 79 (349)
T ss_pred CCceecccCCccccCCCH-HHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHH
Confidence 468999999999999985 7999999999998754332211
Q ss_pred -------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCH
Q psy2206 273 -------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL 315 (430)
Q Consensus 273 -------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L 315 (430)
++++|+++++.. .+.++++|+++++++++|.+.|+
T Consensus 80 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--------~~~~~~~v~~~~~~~~tG~~~~~ 151 (349)
T cd06454 80 TLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREAR--------RPYGKKLIVTEGVYSMDGDIAPL 151 (349)
T ss_pred HhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHHhh--------ccCCCeEEEEeccccCCCCccCH
Confidence 144555554321 02356799999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccc
Q psy2206 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY 395 (430)
Q Consensus 316 ~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~ 395 (430)
++|+++|++||++||+||+|+.|.++..|.++. .......+.|++++|+||++|+.||++++++++++.++.....+.+
T Consensus 152 ~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~gG~i~~~~~~~~~~~~~~~~~~~ 230 (349)
T cd06454 152 PELVDLAKKYGAILFVDEAHSVGVYGPHGRGVE-EFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIF 230 (349)
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCChh-hhccccccCcEEEeechhhhcccCCEEECCHHHHHHHHHhchhhhc
Confidence 999999999999999999999887765554432 2222334679999999999999999999999999988876655555
Q ss_pred cCCCcHHHHHHHHHHHHHHHc
Q psy2206 396 ATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 396 s~s~~P~~~aaalaaL~~l~~ 416 (430)
+++.++..++++.++++.+.+
T Consensus 231 ~~~~~~~~~~a~~~~l~~~~~ 251 (349)
T cd06454 231 STSLPPAVAAAALAALEVLQG 251 (349)
T ss_pred cCCCCHHHHHHHHHHHHHHhc
Confidence 667888888888899988754
No 25
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.83 E-value=5.3e-20 Score=189.71 Aligned_cols=203 Identities=21% Similarity=0.202 Sum_probs=144.0
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHh-CCCCCCCCC--
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS-GCALCSPSA-- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~y-G~g~~~sr~-- 272 (430)
++..+.++.|.++++.| | +++|||+| |+|||++ | |++++|+.++++++ ..+.+.+..
T Consensus 17 ~~~~~~~~~G~~l~d~d-------------G--~~ylD~~~g~~~~~lGh~-~-p~v~~a~~~~~~~~~~~~~~~~~~~~ 79 (397)
T TIGR03246 17 APFIPVRGEGSRVWDQQ-------------G--KEYIDFAGGIAVNALGHA-H-PELVKALIEQADKLWHIGNGYTNEPV 79 (397)
T ss_pred CCceEEEeecCEEEeCC-------------C--CEEEECCcCHhhccCCCC-C-HHHHHHHHHHHHhcccccCccCCHHH
Confidence 34567899999999865 7 89999988 7999996 5 48999999999883 333221111
Q ss_pred ----------------------HHHHHHHHHHHh--------------h------c----------CCCCC---------
Q psy2206 273 ----------------------PSSLEAGLQKAL--------------L------E----------GQPHS--------- 291 (430)
Q Consensus 273 ----------------------~~~Le~~L~~~~--------------~------~----------~~p~~--------- 291 (430)
.++.|.+|+-+. + + +.+..
T Consensus 80 ~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
T TIGR03246 80 LRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPG 159 (397)
T ss_pred HHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCC
Confidence 244444443210 0 0 00000
Q ss_pred ------CC---------CCceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 292 ------GK---------PWRKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 292 ------~~---------~~~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
++ ..+.++||+|++++|.|.+. +|++|+++|++||++||+||+| +|+ |++|.+.. +++
T Consensus 160 ~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~-Gr~G~~~a~~~~ 237 (397)
T TIGR03246 160 GIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGV-GRTGELYAYMHY 237 (397)
T ss_pred ceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcC-Cccccchhhhhc
Confidence 00 02467999999999999664 3999999999999999999999 786 99998764 678
Q ss_pred CCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 352 GIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
++.| ||+ ||||++| .+-|++++++++++.+....++. +.+.+|+.+++++++|+++++++-.+..+++.
T Consensus 238 gv~p---Di~--t~~K~lggG~pigav~~~~~i~~~~~~~~~~~--t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~ 308 (397)
T TIGR03246 238 GVTP---DIL--TSAKALGGGFPIGAMLTTTEIAAHLKVGTHGT--TYGGNPLACAVAGKVLDLVNTPELLAGVKQRH 308 (397)
T ss_pred CCCC---CEE--EeehhhhCCcceeEEEEcHHHHHhccCCCcCC--CCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 8765 777 9999996 22367777999999887544443 33478888999999999987655444444443
No 26
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.83 E-value=2.6e-20 Score=189.09 Aligned_cols=110 Identities=21% Similarity=0.349 Sum_probs=90.0
Q ss_pred eEEEEEcCccCCCCcc---cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccc
Q psy2206 297 KILIVVEGIFSMDGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~ 372 (430)
+.+|++++ +||+|++ .+|++|+++|++||++||+||||+.|++|..|.+.+..++ .||+++||||++ |..
T Consensus 137 ~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~-----~divv~s~SKalaG~r 210 (346)
T TIGR03576 137 TSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLG-----ADLVVTSTDKLMDGPR 210 (346)
T ss_pred ceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcC-----CcEEEeccchhccccc
Confidence 45666666 6999999 6899999999999999999999999887655555443332 479999999998 778
Q ss_pred cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
|||+++++++++.+++..+++.++ ++|+.+++++++|+.+
T Consensus 211 ~G~v~~~~~li~~l~~~~~~~~~s--~~~~~~~aa~~aL~~~ 250 (346)
T TIGR03576 211 GGLLAGRKELVDKIKSVGEQFGLE--AQAPLLAAVVRALEEF 250 (346)
T ss_pred eEEEEeCHHHHHHHHHhhcCcccC--ccHHHHHHHHHHHhhc
Confidence 999999999999999988887765 4566777888898764
No 27
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.83 E-value=1.4e-19 Score=192.30 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=100.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|+++.|.+.| |++|++||++||++||+||+| +| ||++|.++ ++++|+.| ||+ ||+|++|
T Consensus 260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~-TG-fGRtG~~~a~e~~gv~P---Div--tlgK~lg 332 (504)
T PLN02760 260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVI-CA-FGRLGTMFGCDKYNIKP---DLV--SLAKALS 332 (504)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchh-hC-CcccchhhHHHhcCCCC---cEE--Eeccccc
Confidence 4679999999999999998 999999999999999999999 34 56777655 47889876 666 9999996
Q ss_pred c---ccceeecCHHHHHHHHhcC-----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 S---MGGYVAGSKSTIDYIRANS-----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~-----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
. +-|.+++++++++.+.... ..+.+|.+.+|+.|++++++|+++++++-.+..++..+
T Consensus 333 gG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~ 398 (504)
T PLN02760 333 SAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAP 398 (504)
T ss_pred CCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 5566889999999886421 12334556799999999999999988765555555443
No 28
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.82 E-value=4.1e-19 Score=184.19 Aligned_cols=117 Identities=27% Similarity=0.364 Sum_probs=99.1
Q ss_pred CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccch
Q psy2206 294 PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 294 ~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa 368 (430)
+.+.+.||+|+|++..|.+.| |+++.++|++||+++|+||++ +| +|++|+.++ |++|+.| ||+ ||||+
T Consensus 220 ~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQ-tG-~GRTG~~fa~E~~gv~P---Div--t~aK~ 292 (447)
T COG0160 220 PEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQ-TG-FGRTGKMFAFEHFGVEP---DIV--TLAKS 292 (447)
T ss_pred CCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCccccchhhhhcCCCC---CEE--Eeccc
Confidence 457889999999999999887 999999999999999999999 46 799998776 8999976 888 99999
Q ss_pred hcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCc
Q psy2206 369 FGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 369 ~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~ 420 (430)
+|. +-|.+++.++++++... . +.++...+|+.+++++++|++|++++-.
T Consensus 293 ig~G~Pl~avv~r~ei~~~~~g-~--~~~Tf~GNpva~Aaa~AvL~vie~e~L~ 343 (447)
T COG0160 293 LGGGLPLSAVVGRAEIMDWPPG-G--HGGTFGGNPVACAAALAVLDVIEEENLL 343 (447)
T ss_pred ccCCCceeEEeccHHhcccCCc-c--cCCCCCcCHHHHHHHHHHHHHHHHccHH
Confidence 964 44889999999994332 3 3345678999999999999999887443
No 29
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.81 E-value=3e-19 Score=186.49 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=99.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++|.|++.| |++|+++|++||++||+||+| +|+ ++| .|..+++++.| ||+ +|||++|
T Consensus 201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~-tG~--R~G~~ga~~~~gv~P---Di~--~~gK~lg 272 (433)
T PRK00615 201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV-TGF--RVAQGGAAAIYHVKP---DIT--VYGKILG 272 (433)
T ss_pred ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-ccc--cccHhHHHHhcCCCC---CeE--EEccccc
Confidence 4679999999999999998 569999999999999999999 576 344 35567889875 776 7999996
Q ss_pred --cccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.++|++++++++++.+......+. .|.+.+|+.+++++++|+++++++-.+.++++.+
T Consensus 273 gG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~ 333 (433)
T PRK00615 273 GGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQ 333 (433)
T ss_pred CCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 578999999999999865332222 3446799999999999999987765555555443
No 30
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.81 E-value=3.1e-19 Score=184.25 Aligned_cols=200 Identities=18% Similarity=0.200 Sum_probs=141.6
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHhCCCCCC--CC---
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCALCS--PS--- 271 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~--sr--- 271 (430)
+..+.++.|+++++.+ | +++|||+| |+|||++ | |.+++++++.+.+...+... ..
T Consensus 19 ~~~~~~~~G~~~~d~d-------------G--~~~lD~~sg~~~~~lGh~-~-p~v~~a~~~q~~~~~~~~~~~~~~~~~ 81 (395)
T PRK03715 19 DIVFTHGKGSWLYDHN-------------G--KRYLDFIQGWAVNCLGHC-N-PGMVEALAAQAEKLINPSPAFYNEPMA 81 (395)
T ss_pred CceEEeeecCEEEECC-------------C--CEEEECCcChhhccCCCC-C-HHHHHHHHHHHHhcccccccccCHHHH
Confidence 3467889999998765 7 89999986 9999999 4 57999999998874322211 00
Q ss_pred --------------C------HHHHHHHHHHHhh-------------------c----------CCC--------CC---
Q psy2206 272 --------------A------PSSLEAGLQKALL-------------------E----------GQP--------HS--- 291 (430)
Q Consensus 272 --------------~------~~~Le~~L~~~~~-------------------~----------~~p--------~~--- 291 (430)
. .++.|.+|+-+.. + +.+ ..
T Consensus 82 ~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~ 161 (395)
T PRK03715 82 KLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGF 161 (395)
T ss_pred HHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCc
Confidence 0 2444444432110 0 000 00
Q ss_pred -CCC------------CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCC
Q psy2206 292 -GKP------------WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGI 353 (430)
Q Consensus 292 -~~~------------~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~ 353 (430)
+.+ .+.++||+|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|++++ +++++
T Consensus 162 ~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G-~GRtG~~~a~~~~gv 239 (395)
T PRK03715 162 PKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-G-CGRTGTLFAYELSGI 239 (395)
T ss_pred eeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCcchhhHhhcCC
Confidence 000 14678999999999999988 9999999999999999999997 7 799999875 78898
Q ss_pred CCCCccEEEeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 354 DPREVDILMGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 354 ~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.| ||+ ||||++|. +.|+++++++++.+... . +..|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 240 ~P---Di~--t~gK~lg~G~p~~av~~~~~i~~~~~~-~--~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~ 306 (395)
T PRK03715 240 EP---DIM--TLGKGIGGGVPLAALLAKAEVAVFEAG-D--QGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRAR 306 (395)
T ss_pred CC---cee--eehhhhhCCcceEEEEEccccccccCC-C--cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 65 665 99999974 56777888888643211 1 1223367899999999999999876544444443
No 31
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.81 E-value=5.5e-19 Score=184.22 Aligned_cols=119 Identities=23% Similarity=0.320 Sum_probs=97.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|++|.|.+.| |++|++||++||++||+||+|+ | +|++|++++ +++++.| ||+ ||||++|
T Consensus 207 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G-~gr~G~~~~~~~~gv~p---Di~--t~sK~lg 279 (433)
T PRK08117 207 EVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-G-FGRTGEWFAAQTFGVVP---DIM--TIAKGIA 279 (433)
T ss_pred cEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-c-cCccccchhHhhcCCCC---CEe--ehhhhcc
Confidence 5679999999999999998 9999999999999999999997 7 899998875 7788765 665 9999997
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
.+.|++++++++++.+.... +..+.+.+|+.+++++++|+++++++-.+..
T Consensus 280 ~G~pigav~~~~~i~~~~~~~~--~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~ 332 (433)
T PRK08117 280 SGLPLSAVVASKELMEQWPLGS--HGTTFGGNPVACAAALATLEVIKEEKLLDNA 332 (433)
T ss_pred CCCcceeEEEcHHHHhhccCCC--CCCCCCcCHHHHHHHHHHHHHHHhccHHHHH
Confidence 33478889999998775433 3345567999999999999999765433333
No 32
>PRK12403 putative aminotransferase; Provisional
Probab=99.80 E-value=9.5e-19 Score=184.06 Aligned_cols=121 Identities=25% Similarity=0.274 Sum_probs=98.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|+++.|.+.| |++|++||++||++||+||+| +| +|++|++++ +++|+.| ||+ +|+|++|
T Consensus 222 ~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tG-fGRtG~~~a~e~~gv~P---Div--~~gK~lg 294 (460)
T PRK12403 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI-GG-FGRTGEWFAHEHFGFEP---DTL--SIAKGLT 294 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCchhhhhhhcCCCC---CeE--EEccccc
Confidence 4568999999999999988 999999999999999999999 35 899999876 8899876 788 7999997
Q ss_pred ---cccceeecCHHHHHHHHhcCCcc--cccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSHVR--SYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~~~--~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
.+-|.+++++++++.+......+ ..|.+.+|+.|++++++|+++++++-.+..
T Consensus 295 gG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~ 352 (460)
T PRK12403 295 SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRV 352 (460)
T ss_pred ccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 23344558899999886533333 235568999999999999999877544444
No 33
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.80 E-value=1.5e-18 Score=182.43 Aligned_cols=125 Identities=20% Similarity=0.339 Sum_probs=98.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++++++|++||++||+||+| +| +|++|+++ ++++|+.| ||+ ||+|++|
T Consensus 231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~-tG-~GRtG~~~a~e~~gv~P---Div--t~gK~lg 303 (459)
T PRK11522 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQ-TG-MGRTGKMFACEHENVQP---DIL--CLAKALG 303 (459)
T ss_pred cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccce-ec-CCccchhhhhhccCCCC---CEE--Eechhhh
Confidence 4679999999999999988 999999999999999999999 57 79999875 47899876 777 9999997
Q ss_pred c---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 S---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
. +-|.+++++++++.+......+..|...+|+.+++++++|+++++++-.+..++..
T Consensus 304 gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g 363 (459)
T PRK11522 304 GGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKG 363 (459)
T ss_pred CCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3 45666677888887643221223344459999999999999998876544444443
No 34
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.79 E-value=2.2e-18 Score=181.26 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=145.3
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCC--C------
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCS--P------ 270 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~--s------ 270 (430)
++.++.++.|+++++.| | +++|||+++.++.|++++|.+++|+.+++++++.+... +
T Consensus 54 ~~~~i~~a~G~~l~D~d-------------G--~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~l 118 (459)
T PRK06082 54 CLDVLASAEGIYIEDVD-------------G--KKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIEC 118 (459)
T ss_pred CCceEEeeeeeEEEECC-------------C--CEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHH
Confidence 35678899999998765 7 89999998888777766679999999999986543210 0
Q ss_pred -------------CC------HHHHHHHHHHHh------------------------hcCCC------------------
Q psy2206 271 -------------SA------PSSLEAGLQKAL------------------------LEGQP------------------ 289 (430)
Q Consensus 271 -------------r~------~~~Le~~L~~~~------------------------~~~~p------------------ 289 (430)
+. .++.|.+++-+. ..+.+
T Consensus 119 ae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~ 198 (459)
T PRK06082 119 AEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPP 198 (459)
T ss_pred HHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCC
Confidence 00 133333332110 00000
Q ss_pred -------CCC-----------------CCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 290 -------HSG-----------------KPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 290 -------~~~-----------------~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
..+ ...+.++||+|+|+++.+.++| |++|+++|++||++||+||+++ | +|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-~GR 276 (459)
T PRK06082 199 AVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-G-MGR 276 (459)
T ss_pred CcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCc
Confidence 000 0124679999999999766666 9999999999999999999996 6 799
Q ss_pred CCCccc-eecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 343 TGRGVT-EYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 343 ~GrG~~-e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+|.+++ +++|+.| ||+ +|+|++|. +-|.+++++++.+... ....+ +|.+.+|+.+++++++|+++++++
T Consensus 277 tG~~fa~e~~gv~P---Div--~~gKgl~gG~~P~~av~~~~~i~~~~~-~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~ 349 (459)
T PRK06082 277 TGEWFTHQAYGIEP---DIL--CIGKGLGGGLVPIAAMITKDKYNTAAQ-ISLGH-YTHEKSPLGCAAALATIEVIEQEG 349 (459)
T ss_pred cchhhHhHhhCCCC---CEE--EecccccCCCCcceEEEEcHHHHhhcc-CCCCC-CCCCcCHHHHHHHHHHHHHHHhcC
Confidence 998865 7889876 787 79999962 4466777888765432 12222 577889999999999999998776
Q ss_pred CchHHHhhhh
Q psy2206 419 NGDEGNVRHS 428 (430)
Q Consensus 419 ~~~~~~~r~~ 428 (430)
-.+..+++.+
T Consensus 350 l~~~~~~~g~ 359 (459)
T PRK06082 350 LLEKVKADSQ 359 (459)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 35
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.79 E-value=9.5e-19 Score=180.93 Aligned_cols=203 Identities=22% Similarity=0.222 Sum_probs=142.8
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHh-CCCCCCCCC--
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS-GCALCSPSA-- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~y-G~g~~~sr~-- 272 (430)
++..+.++.|.++++.| | +++|||.| ++|||++ || .+++|+.+++.++ ..+.+....
T Consensus 21 ~~~~~~~~~G~~~~d~d-------------G--~~~lD~~~g~~~~~lGh~-~p-~v~~A~~~~~~~~~~~~~~~~~~~~ 83 (406)
T PRK12381 21 APFIPVRGEGSRLWDQQ-------------G--KEYIDFAGGIAVNALGHA-HP-ALREALNEQASKFWHTGNGYTNEPV 83 (406)
T ss_pred CCceEEEeecCEEEeCC-------------C--CEEEEcCcCHhhccCCCC-CH-HHHHHHHHHHhhcccccCccCCHHH
Confidence 44567899999999865 7 88999988 7899999 64 7899999999874 232221110
Q ss_pred ----------------------HHHHHHHHHHHhh------------------------------cCCCC----------
Q psy2206 273 ----------------------PSSLEAGLQKALL------------------------------EGQPH---------- 290 (430)
Q Consensus 273 ----------------------~~~Le~~L~~~~~------------------------------~~~p~---------- 290 (430)
.++.|.+|+-+.. .+.|.
T Consensus 84 ~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~ 163 (406)
T PRK12381 84 LRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPP 163 (406)
T ss_pred HHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCC
Confidence 2444444432100 01110
Q ss_pred --CCCC------------CceEEEEEcCccCCCCcc----cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 291 --SGKP------------WRKILIVVEGIFSMDGSI----VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 291 --~~~~------------~~~~lIi~E~v~sm~G~i----~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
.+-+ .+.++||+|+++++.|.+ ..|++|+++|++||++||+||+| +| +|++|.+++ +++
T Consensus 164 ~~~~~~~~d~~~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG-~gr~G~~~~~~~~ 241 (406)
T PRK12381 164 DIRHAAYNDLNSASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TG-VGRTGELYAYMHY 241 (406)
T ss_pred CeeEeCCCCHHHHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hC-CCCCcchhhhHhh
Confidence 0000 156789999999999955 34999999999999999999999 67 488887654 567
Q ss_pred CCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 352 GIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
++.| ||+ ||||++| .+-|++++++++++.+....+. .+.+.+|+.+++++++|+++.+++-.+..+++.
T Consensus 242 ~v~p---Di~--t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~--~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~ 312 (406)
T PRK12381 242 GVTP---DVL--TTAKALGGGFPIGAMLTTEKCASVMTVGTHG--TTYGGNPLASAVAGKVLELINTPEMLNGVKQRH 312 (406)
T ss_pred CCCC---CEE--EehhhhhCCCceEEEEEcHHHHhhcCCCCCC--CCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 7764 664 9999996 2237788999999988754333 344678999999999999997655444444443
No 36
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.79 E-value=2.5e-18 Score=175.99 Aligned_cols=198 Identities=20% Similarity=0.238 Sum_probs=157.6
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeee-cCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC------
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNL-ASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA------ 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf-~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~------ 272 (430)
|..+.++.|++|+++| | +++|+| +++--+.|+|.+|.|++|+++++++ |++.+.+..
T Consensus 36 P~fi~~g~Ga~l~DvD-------------G--n~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~-G~~fg~Pte~Ei~~A 99 (432)
T COG0001 36 PIFIERGKGAYLTDVD-------------G--NEYIDYVLGWGPLILGHAHPAVVEAVQEQLER-GLSFGAPTELEVELA 99 (432)
T ss_pred CeeEEeccCCeEEeCC-------------C--CEeeehhccCcccccCCCCHHHHHHHHHHHHh-cCCCCCCCHHHHHHH
Confidence 4557899999999876 7 889999 4777788888888999999999987 776666554
Q ss_pred --------------------------------------------------------------------------------
Q psy2206 273 -------------------------------------------------------------------------------- 272 (430)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (430)
T Consensus 100 ell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~t 179 (432)
T COG0001 100 ELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHT 179 (432)
T ss_pred HHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccE
Confidence
Q ss_pred -------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccC
Q psy2206 273 -------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALG 341 (430)
Q Consensus 273 -------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG 341 (430)
+++|++++++. +++.+.||+|++-++.|.|.| |++|++||++||++||+||++. |+-.
T Consensus 180 i~~~yND~~al~~~~~~~----------g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT-GFR~ 248 (432)
T COG0001 180 LVLPYNDLEALEEAFEEY----------GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT-GFRV 248 (432)
T ss_pred EEecCCCHHHHHHHHHHc----------CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh-hccc
Confidence 26677777663 346889999999999999988 9999999999999999999984 5422
Q ss_pred CCCCccceecCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 342 PTGRGVTEYFGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 342 ~~GrG~~e~~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
. -.|..+++|+.| |+. ||+|.+| ++-|++.|++++++.+.....-|. -|.+.+|+.++|.+++|+.+++++
T Consensus 249 ~-~gGaq~~~gi~P---Dlt--tlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~ 322 (432)
T COG0001 249 A-LGGAQGYYGVEP---DLT--TLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEE 322 (432)
T ss_pred C-CcccccccCcCc---chh--hhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcc
Confidence 2 136778999987 666 9999995 566888999999998876553332 356779999999999999999865
Q ss_pred C-chHHHhhhhcC
Q psy2206 419 N-GDEGNVRHSSI 430 (430)
Q Consensus 419 ~-~~~~~~r~~~L 430 (430)
+ ++++.+..++|
T Consensus 323 ~~y~~l~~~~~~L 335 (432)
T COG0001 323 GVYERLDALGERL 335 (432)
T ss_pred cHHHHHHHHHHHH
Confidence 4 77777766654
No 37
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.79 E-value=3e-18 Score=176.56 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=91.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++|+|.+.| |++|+++|++||+++|+||+| +| +|++|++++ +++++.| ||+ +|||+++
T Consensus 186 ~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~-~g-~g~~G~~~~~~~~~~~~---di~--~~gK~l~ 258 (401)
T TIGR01885 186 NVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQ-TG-LGRTGKLLCVDHENVKP---DIV--LLGKALS 258 (401)
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hC-CCccchhhHHhhcCCCC---CEE--Eeecccc
Confidence 4678999999999999998 999999999999999999999 57 788888764 4556543 666 7899997
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
..+ |++++++++++.++.....+ +.+.+|+.+++++++|+++++++
T Consensus 259 ~g~~~ig~v~~~~~i~~~~~~~~~~~--t~~~~p~~~~aa~a~L~~i~~~~ 307 (401)
T TIGR01885 259 GGVYPVSAVLADDDVMLTIKPGEHGS--TYGGNPLACAVAVAALEVLEEEK 307 (401)
T ss_pred CCCCCcEEEEEcHHHHhhccCCCCCC--CCCCCHHHHHHHHHHHHHHHhcc
Confidence 422 56889999999887644333 33467888999999999997653
No 38
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.78 E-value=4.1e-18 Score=178.34 Aligned_cols=123 Identities=23% Similarity=0.361 Sum_probs=98.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||+++|+||+| +| +|++|.++ ++++|+.| ||+ ||+|++|
T Consensus 224 ~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~-tG-~GRtG~~~a~e~~gv~P---Div--t~gK~lg 296 (442)
T TIGR03372 224 DVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQ-TG-MGRTGKMFACEHEGVQP---DIL--CLAKALG 296 (442)
T ss_pred cEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecc-cC-CCccccchhhhhcCCCC---Cee--eehhhhc
Confidence 5689999999999999998 999999999999999999999 57 79999875 47889876 777 8999997
Q ss_pred ---cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|.+++++++++.+......+..|.+.+|+.+++++++|+++++++-.+..++
T Consensus 297 ~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~ 354 (442)
T TIGR03372 297 GGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAI 354 (442)
T ss_pred CCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3456677889999887432212223445599999999999999987764444333
No 39
>PRK06062 hypothetical protein; Provisional
Probab=99.78 E-value=5.3e-18 Score=178.01 Aligned_cols=119 Identities=23% Similarity=0.271 Sum_probs=98.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||++||+||+|+ | ||++|.++ ++++|+.| ||+ ||+|++|
T Consensus 214 ~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t-G-fGRtG~~~a~~~~gv~P---Di~--t~gK~lg 286 (451)
T PRK06062 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA-G-FGRTGKWFAIEHFGVVP---DLI--TFAKGVN 286 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc-C-CCcCcHHHHHHhcCCCC---Cee--eechhhh
Confidence 4689999999999999998 9999999999999999999995 6 79999875 47899876 666 9999997
Q ss_pred c---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 371 S---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
. +-|.+++++++++.+......+.+|.+.+|+.+++++++|+++++++-.+
T Consensus 287 gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~ 340 (451)
T PRK06062 287 SGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVE 340 (451)
T ss_pred cCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 3 45667788899998864322233456678999999999999998876444
No 40
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.78 E-value=3.4e-18 Score=175.53 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=139.1
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHhCCCCCC-------
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCALCS------- 269 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~------- 269 (430)
+.++.++.|.++++.+ | +++|+|+| +++||.. | |.+.+++.+++++++.....
T Consensus 26 ~~~~~~~~G~~~~d~d-------------g--~~~lD~~s~~~~~~lG~~-~-p~v~~ai~~~~~~~~~~~~~~~~~~~~ 88 (398)
T PRK03244 26 PLALVRGEGAVVWDVD-------------G--KEYLDLLGGIAVNALGHA-H-PAVVEAVTRQLATLGHVSNLFATEPQI 88 (398)
T ss_pred CceEEEeeecEEEECC-------------C--CEEEECCcCHhhccCCCC-C-HHHHHHHHHHHHhccCccCccCCHHHH
Confidence 4567888999999765 7 88999988 8999984 5 58899999999987643210
Q ss_pred ------------C---CC------HHHHHHHHHHHh-------h------cCC---------------------CCCC--
Q psy2206 270 ------------P---SA------PSSLEAGLQKAL-------L------EGQ---------------------PHSG-- 292 (430)
Q Consensus 270 ------------s---r~------~~~Le~~L~~~~-------~------~~~---------------------p~~~-- 292 (430)
. +. .+.++.+++-.. + +|. ++..
T Consensus 89 ~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (398)
T PRK03244 89 ALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHV 168 (398)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEe
Confidence 0 00 133333332100 0 000 0000
Q ss_pred --C---------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCC
Q psy2206 293 --K---------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPR 356 (430)
Q Consensus 293 --~---------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~ 356 (430)
. ..+.++|++|++++|+|.+.| +++|+++|++||++||+||+|+ | +|++|.+++ +++++.|
T Consensus 169 ~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g-~gr~g~~~~~~~~~~~p- 245 (398)
T PRK03244 169 PYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-G-IGRTGAWFAHQHDGVTP- 245 (398)
T ss_pred CCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CcccchHHhhhhhCCCC-
Confidence 0 024678999999999999988 9999999999999999999996 5 788887643 5567654
Q ss_pred CccEEEeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchH
Q psy2206 357 EVDILMGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDE 422 (430)
Q Consensus 357 ~~dIv~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~ 422 (430)
||+ ||||++|. +-|++++++++++.+....+. .+.+.+|+.+++++++|+++.+++-.+.
T Consensus 246 --Di~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 307 (398)
T PRK03244 246 --DVV--TLAKGLGGGLPIGACLAFGPAADLLTPGLHG--STFGGNPVACAAALAVLDTIASEGLLEN 307 (398)
T ss_pred --CEE--EEchhhhCCcccEEEEEcHHHHhhccCCCCc--CCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 665 99999972 338888889999988654333 3446789999999999998876543333
No 41
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.77 E-value=3.4e-18 Score=178.02 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=96.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+.++||+|++++|+|.+.| |++|++||++||+++|+||+|+ |+ .-.+.+..+++++.| ||+ ||||+++.
T Consensus 197 ~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~-r~g~~~~~~~~~~~p---Di~--~~gK~l~~ 269 (426)
T PRK00062 197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GF-RVALGGAQGYYGVTP---DLT--TLGKIIGG 269 (426)
T ss_pred cEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-cc-ccCCccHHHHhCCCc---chH--hhhhHhhC
Confidence 5679999999999999998 9999999999999999999996 65 222244556778765 554 99999974
Q ss_pred --ccceeecCHHHHHHHHhcCCcccc-cCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 372 --MGGYVAGSKSTIDYIRANSHVRSY-ATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 372 --~GG~v~gs~~li~~l~~~~~~~~~-s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+.|++++++++++.++.....+.+ +.+.+|+.+++++++|+++++++-.+..++.
T Consensus 270 G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~ 327 (426)
T PRK00062 270 GLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEAL 327 (426)
T ss_pred CCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 457788999999998753333333 3478999999999999999776444444333
No 42
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.77 E-value=4.2e-18 Score=173.53 Aligned_cols=203 Identities=26% Similarity=0.294 Sum_probs=139.7
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCC---ccCCCCCcHHHHHHHHHHHHHhCCCC-CC-CCC-
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYN---YLGFGENTGLCTERSKESVKQSGCAL-CS-PSA- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~n---YLGl~~~~~~v~~a~~~ai~~yG~g~-~~-sr~- 272 (430)
++.++.++.|++++..+ | +++|||+||+ |||+ .| |.+++++.+++++++..+ .. ...
T Consensus 11 ~~~~~~~~~G~~~~d~~-------------G--~~~lD~~s~~~~~~lG~-~~-p~v~~a~~~~~~~~~~~~~~~~~~~~ 73 (377)
T PRK02936 11 FPIDIVKGKGTKVTDNN-------------G--KTYLDFTSGIAVCNLGH-CH-PTVTKAVQEQLDDIWHVSNLFTNSLQ 73 (377)
T ss_pred CCceEEEeecCEEEeCC-------------C--CEEEECCcchhhccCCC-CC-HHHHHHHHHHHHhccccccccCCHHH
Confidence 34678899999998765 7 8999999998 9997 34 578999999998753211 10 000
Q ss_pred ----------------------HHHHHHHHHHH--------h------hc----------CCCC------------CCCC
Q psy2206 273 ----------------------PSSLEAGLQKA--------L------LE----------GQPH------------SGKP 294 (430)
Q Consensus 273 ----------------------~~~Le~~L~~~--------~------~~----------~~p~------------~~~~ 294 (430)
.+..+.+++-. . .+ +.+. ...+
T Consensus 74 ~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (377)
T PRK02936 74 EEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVP 153 (377)
T ss_pred HHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeC
Confidence 12233332210 0 00 0000 0000
Q ss_pred ------------CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCC
Q psy2206 295 ------------WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPRE 357 (430)
Q Consensus 295 ------------~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~ 357 (430)
.+.++||+|+++++.|.+.+ |++|+++|++||+++|+||+| .| +|.+|+++. +++++.|
T Consensus 154 ~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~-~g-~g~~g~~~~~~~~~~~~-- 229 (377)
T PRK02936 154 FNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQ-TG-IGRTGTLFAYEQFGLDP-- 229 (377)
T ss_pred CCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCchhhHHHhhCCCC--
Confidence 14679999999999887653 999999999999999999999 46 688887653 5666654
Q ss_pred ccEEEeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 358 VDILMGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 358 ~dIv~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
||+ ||||+++. ++|++++++++++.+....+. .+.+.+|+.+++++++|+.+..++..++.+++.
T Consensus 230 -di~--t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~ 296 (377)
T PRK02936 230 -DIV--TVAKGLGNGIPVGAMIGKKELGTAFGPGSHG--STFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKG 296 (377)
T ss_pred -cEE--EEcccccCCCccEEEEEcHHHHhhccCCCCC--CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 655 89999973 458999999999988654333 344579999999999999986554444444443
No 43
>PRK06105 aminotransferase; Provisional
Probab=99.77 E-value=6e-18 Score=177.98 Aligned_cols=125 Identities=27% Similarity=0.312 Sum_probs=101.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|+++.|.+.| |++|++||++||++||+||++ +| +|++|.+++ +++++.| ||+ ||||++|
T Consensus 218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~-tG-~GRtG~~f~~~~~~v~P---Di~--~~gK~lg 290 (460)
T PRK06105 218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVI-CG-FGRTGNMFGCETFGIKP---DIL--VMSKQLS 290 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccc-cC-CCcCchhhhHHhcCCCC---Cee--eeecccc
Confidence 4689999999999999887 999999999999999999999 34 677777654 7788876 777 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcCC-----cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSH-----VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~-----~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
.+.|++++++++++.+..... .+.+|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 291 gG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g 355 (460)
T PRK06105 291 SSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERG 355 (460)
T ss_pred cCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 367889999999998875321 144677899999999999999998876554444443
No 44
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.77 E-value=4.4e-18 Score=172.78 Aligned_cols=122 Identities=24% Similarity=0.331 Sum_probs=99.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+++.||+|+|....|.+.| |+++++||++||++||+||++ +| +|++|.-++ +++|+.| ||+ |++|++|
T Consensus 184 ~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ-tG-~GRTGk~fA~e~~gV~P---DI~--tlaK~Lg 256 (404)
T COG4992 184 DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQ-TG-LGRTGKLFAYEHYGVEP---DIL--TLAKALG 256 (404)
T ss_pred CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccc-cC-CCccchHHHHHHhCCCC---CEE--Eeecccc
Confidence 6889999999999888776 999999999999999999999 57 799999875 8999987 788 9999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.|-|++++++.+.+.+....++. |...+|+.||++.++|+++.+++-.+..+++
T Consensus 257 GG~PigA~la~~~~~~~~~~G~HgS--TfGGNpLacAv~~a~l~~l~~e~ll~~v~~~ 312 (404)
T COG4992 257 GGFPIGAMLATEEIASAFTPGDHGS--TFGGNPLACAVALAVLEVLLEEGLLENVREK 312 (404)
T ss_pred CCccceeeEEchhhhhcCCCCcccC--CCCcCHHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 34356666666667666555553 4457999999999999999888665555544
No 45
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.77 E-value=5.4e-18 Score=174.83 Aligned_cols=204 Identities=21% Similarity=0.196 Sum_probs=140.5
Q ss_pred ccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCC---CccCCCCCcHHHHHHHHHHHHHhCC-CCC-CCCC
Q psy2206 198 CFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGC-ALC-SPSA 272 (430)
Q Consensus 198 ~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~---nYLGl~~~~~~v~~a~~~ai~~yG~-g~~-~sr~ 272 (430)
.++..+.++.|+++++.| | +++|||+|+ +|||+ .| |.+++++.+++++++. +.. ....
T Consensus 21 ~~~~~~~~~~G~~~~d~d-------------G--~~~iD~~~~~~~~~lGh-~~-p~v~~a~~~~~~~~~~~~~~~~~~~ 83 (403)
T PRK05093 21 PAEFIPVRGEGSRVWDQQ-------------G--KEYIDFAGGIAVTALGH-CH-PALVKALKEQGEKLWHISNVFTNEP 83 (403)
T ss_pred CCCeeEEEeecCEEEeCC-------------C--CEEEEcCcCHHhccCCC-CC-HHHHHHHHHHHHhcCcccCccCCHH
Confidence 455677889999999765 7 889999885 99999 45 4789999999987432 211 1110
Q ss_pred -----------------------HHHHHHHHHHH--------------h------hcCC------------------CC-
Q psy2206 273 -----------------------PSSLEAGLQKA--------------L------LEGQ------------------PH- 290 (430)
Q Consensus 273 -----------------------~~~Le~~L~~~--------------~------~~~~------------------p~- 290 (430)
.++.|.+++-+ . .+|. |.
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~ 163 (403)
T PRK05093 84 ALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKP 163 (403)
T ss_pred HHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCC
Confidence 13333333210 0 0000 00
Q ss_pred ---CCC------------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-ee
Q psy2206 291 ---SGK------------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EY 350 (430)
Q Consensus 291 ---~~~------------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~ 350 (430)
.+- ..++++||+|+++++.|.+.| +++|+++|++||+++|+||+|+ | +|.+|++.. ++
T Consensus 164 ~~~~~~~~~d~~~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~~~~ 241 (403)
T PRK05093 164 ADITHVPFNDLAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-G-MGRTGDLFAYMH 241 (403)
T ss_pred CCcEEeCCCCHHHHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCccchhhhh
Confidence 000 014679999999999998755 9999999999999999999997 6 677776543 45
Q ss_pred cCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 351 FGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+++.| || .||||+++ .+.|++++++++++.+....+. .+.+.+|+.+++++++|+.+.+++-..+.+++.
T Consensus 242 ~~~~p---di--~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~--~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~ 313 (403)
T PRK05093 242 YGVTP---DI--LTSAKALGGGFPIGAMLTTAEIASHFKVGTHG--STYGGNPLACAVAEAVFDIINTPEVLEGVKARR 313 (403)
T ss_pred cCCCC---CE--EEecccccCCcceEEEEEcHHHHhhcCCCCCC--CCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 66654 54 49999997 2338899999999988754333 244578888999999999986554444444443
No 46
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.77 E-value=8e-18 Score=177.55 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=97.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|++||++||++||+||+| +|+ ++|. |..+++|+.| ||+ ||+|++|
T Consensus 246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGf--R~g~~ga~~~~gv~P---Di~--t~gK~lg 317 (474)
T PLN02482 246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGF--RIAYGGAQEYFGITP---DLT--TLGKVIG 317 (474)
T ss_pred ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCe--ecCcchHhHHhCCCC---CEE--Eecchhh
Confidence 5679999999999999987 778999999999999999999 686 3343 4457889876 675 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcc-cccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhhc
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVR-SYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHSS 429 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~-~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~~ 429 (430)
. +-|.+++++++++.+......+ ..|.+.+|+.+++++++|+++++++-.+.+.++.++
T Consensus 318 gG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~ 379 (474)
T PLN02482 318 GGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKK 379 (474)
T ss_pred CCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3 3356689999999986432222 234457899999999999999877666555555443
No 47
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.76 E-value=1e-17 Score=171.90 Aligned_cols=123 Identities=26% Similarity=0.341 Sum_probs=93.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++|+|.+.| +++|+++|++||++||+||+|+ | +|+.|.+. .+++++.| |++ ||||+++
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g-~g~~g~~~~~~~~~~~~---d~~--t~sK~l~ 263 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-G-FGRTGKMFAFEHFGVEP---DIV--TLGKGLG 263 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCcchhhHhhcCCCC---CeE--EEccccc
Confidence 5679999999999999887 9999999999999999999997 4 56666653 35666543 554 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
. +.|++++++++++.+......+..+.+.+|+.++++.++|+++++++-.+.+++
T Consensus 264 ~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~ 320 (413)
T cd00610 264 GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAE 320 (413)
T ss_pred CccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5 237788899999987222223334666788889999999999977543333333
No 48
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.76 E-value=9.9e-18 Score=171.78 Aligned_cols=193 Identities=21% Similarity=0.232 Sum_probs=135.7
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHh-CCCCCC-CCC--
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS-GCALCS-PSA-- 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~y-G~g~~~-sr~-- 272 (430)
+..+.++.|+++++.| | +++|||+| +++||+. | |.+++|+.+++++. ..+... ...
T Consensus 14 ~~~~~~~~G~~~~d~d-------------G--~~~lD~~~g~~~~~lGh~-~-p~v~~a~~~~~~~~~~~~~~~~~~~~~ 76 (389)
T PRK01278 14 DLAFERGEGVWLIDED-------------G--ERYLDFASGIAVNSLGHA-H-PHLVEALKEQAEKLWHVSNLYRIPEQE 76 (389)
T ss_pred CceEEeeecCEEEECC-------------C--CEEEECCccHhhccCCCC-C-HHHHHHHHHHHHhcCccccccCChHHH
Confidence 4567899999998765 7 89999988 7899994 5 47899999999873 222110 000
Q ss_pred ---------------------HHHHHHHHHHHh-------------h-----------------cCCCCCC---------
Q psy2206 273 ---------------------PSSLEAGLQKAL-------------L-----------------EGQPHSG--------- 292 (430)
Q Consensus 273 ---------------------~~~Le~~L~~~~-------------~-----------------~~~p~~~--------- 292 (430)
.++++.+++-.. + .+.+...
T Consensus 77 ~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
T PRK01278 77 RLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPG 156 (389)
T ss_pred HHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCC
Confidence 244444432210 0 0000000
Q ss_pred ---C--C----------CceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecC
Q psy2206 293 ---K--P----------WRKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFG 352 (430)
Q Consensus 293 ---~--~----------~~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g 352 (430)
- + .++++||+|++++++|.+. .|++|+++|++||++||+||+|+ | +|++|.++. ++++
T Consensus 157 ~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~~~~~~ 234 (389)
T PRK01278 157 FDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-G-MGRTGKLFAHEWAG 234 (389)
T ss_pred ceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCCcceeecccC
Confidence 0 0 1467999999999999554 49999999999999999999996 6 677777554 5667
Q ss_pred CCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 353 IDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+.| |++ ||||+++ .+.|++++++++++.+....+. .+.+.+|+.+++++++|+++++++
T Consensus 235 ~~p---di~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~l~~~~ 295 (389)
T PRK01278 235 VTP---DIM--AVAKGIGGGFPLGACLATEEAAKGMTPGTHG--STYGGNPLAMAVGNAVLDVILAPG 295 (389)
T ss_pred CCC---CEE--EEehhccCCcceEEEEEcHHHHhccCCCCCC--CCCCccHHHHHHHHHHHHHHhhhH
Confidence 654 554 9999996 2458889999999888664444 344578999999999999986543
No 49
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.76 E-value=1.9e-17 Score=173.49 Aligned_cols=124 Identities=22% Similarity=0.285 Sum_probs=97.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .+++++.| ||+ ||||++|
T Consensus 215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv~P---Div--t~gK~l~ 287 (442)
T PRK13360 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVIT-G-FGRLGAPFAAQYFGVTP---DLL--TCAKGLT 287 (442)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCccchhhhhcCCCC---cee--eeeeccc
Confidence 4679999999999999998 9999999999999999999994 5 48888776 47888876 777 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcCC-----cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSH-----VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~-----~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.+-|.+++++++++.+..... .+.+|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 288 gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~ 351 (442)
T PRK13360 288 NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARL 351 (442)
T ss_pred cCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344567789999988764211 12245567999999999999999877543444333
No 50
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.76 E-value=1.3e-17 Score=174.06 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=95.9
Q ss_pred ceEEEEEcCccCCCCccc-----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIV-----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~-----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+..+||+|++++++|.+. .|++|+++|++||++||+||+| +| +|++|.+++ +++|+.| ||+ ||+|++
T Consensus 204 ~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG-~GrtG~~fa~~~~gv~P---Di~--t~gK~l 276 (428)
T PRK07986 204 EIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TG-FGRTGKLFACEHAGIAP---DIL--CLGKAL 276 (428)
T ss_pred cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CccCCCeeeecccCCCC---CEE--Eechhh
Confidence 467899999977776642 2999999999999999999999 78 599998864 7889876 787 899999
Q ss_pred c---cccceeecCHHHHHHHHhcCC---cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSH---VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~---~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
| .+.|.+++++++++.+..... .+..|.+.+|+.+++++++|+++++++-.+..+++.
T Consensus 277 ~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g 340 (428)
T PRK07986 277 TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIE 340 (428)
T ss_pred hCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6 233445788999999875320 122344578999999999999998775444444443
No 51
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.76 E-value=1.8e-17 Score=172.76 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=97.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+++++.|.+.| |++|+++|++||++||+||+|+ |+ ++|.+ ..+++|+.| ||+ ||+|++|
T Consensus 200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G~--Rt~~~~a~~~~gv~P---Div--t~gK~lg 271 (428)
T PRK12389 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT-AF--RFMYGGAQDLLGVEP---DLT--ALGKIIG 271 (428)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccc-cc--ccCcchhhHHhCCCC---Cee--eechhhc
Confidence 4678999999999999998 9999999999999999999994 53 45544 456789876 776 9999996
Q ss_pred c--ccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
. +-|.+++++++++.+......+. .|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 272 gG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~ 332 (428)
T PRK12389 272 GGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGA 332 (428)
T ss_pred CCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3 34666889999998864222222 3557899999999999999988765555555443
No 52
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.75 E-value=1.5e-17 Score=173.58 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=97.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc--cc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS--MG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~--~G 373 (430)
+.++||+|++++|.++..+|++|+++|++||++||+||+| +|+ +.++.|..+++++.| ||+ ||+|++|. ++
T Consensus 187 ~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~-~~~~~g~~~~~gv~P---Di~--t~gK~lggG~p~ 259 (431)
T PRK06209 187 RIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGF-RWHMRGAQKLYGIVP---DLS--CFGKALGNGFAV 259 (431)
T ss_pred CEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccC-CcCcchhhHHhCCCc---cee--eehhhhcCCccc
Confidence 4679999999999877778999999999999999999999 785 445556666788865 665 99999974 78
Q ss_pred ceeecCHHHHHH--HHh--cCCcccc--cCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 374 GYVAGSKSTIDY--IRA--NSHVRSY--ATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 374 G~v~gs~~li~~--l~~--~~~~~~~--s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
|++++++++++. +.. ....+++ +.+.+|+.+++++++|+++++++..+...++.
T Consensus 260 ~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g 319 (431)
T PRK06209 260 SALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQG 319 (431)
T ss_pred EEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999987 321 1233333 33457899999999999998775455454443
No 53
>PRK06541 hypothetical protein; Provisional
Probab=99.75 E-value=3.6e-17 Score=172.13 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=100.0
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
...++||+|+|+++.|.+.| |++|+++|++||++||+||+|. | +|++|.++ .+++++.| ||+ ||||++
T Consensus 220 ~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G-fGR~G~~~a~~~~gv~P---Div--t~gK~l 292 (460)
T PRK06541 220 DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVIC-A-FGRLGEMFGCERFGYVP---DII--TCAKGI 292 (460)
T ss_pred CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCchhhhhhhcCCCC---CEE--Eecccc
Confidence 35789999999999999998 9999999999999999999993 4 46777764 46788865 777 899999
Q ss_pred cc---ccceeecCHHHHHHHHhcCCc--ccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 GS---MGGYVAGSKSTIDYIRANSHV--RSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~~~~~--~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
|. +-|++++++++++.+...... +.+|.+.+|+.+++++++|+++++++-.+..+++.+
T Consensus 293 ~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~ 356 (460)
T PRK06541 293 TSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEP 356 (460)
T ss_pred cCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 72 456777889998877643222 234777899999999999999987765555554443
No 54
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.75 E-value=2.5e-17 Score=171.76 Aligned_cols=125 Identities=20% Similarity=0.208 Sum_probs=95.0
Q ss_pred ceEEEEEcCccCCCCc-----ccCHHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGS-----IVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~-----i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.++||+|+|++++|. ..+|++|+++|++||++||+||+| +| +|++|+++ .+++++.| ||+ ++||++
T Consensus 207 ~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG-~Gr~G~~~~~~~~~v~p---Di~--~~gK~l 279 (427)
T TIGR00508 207 EIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TG-FGRTGKLFACEHAGVVP---DIL--CVGKAL 279 (427)
T ss_pred cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCCccchhhhcCCCC---CEE--Eechhh
Confidence 4568999999888773 345999999999999999999999 78 69999885 46888865 777 699999
Q ss_pred c---cccceeecCHHHHHHHHhcCC-c--ccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSH-V--RSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~-~--~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .+.+.+++++++++.++.... . +..|...+|+.+++++++|+++++++-.+..+++.
T Consensus 280 ~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~ 343 (427)
T TIGR00508 280 TGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIE 343 (427)
T ss_pred hcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5 133456778899999875321 1 22244578999999999999998775544444443
No 55
>PLN02624 ornithine-delta-aminotransferase
Probab=99.74 E-value=9.1e-17 Score=169.67 Aligned_cols=114 Identities=19% Similarity=0.314 Sum_probs=91.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|++++|.+.| |++|.++|++||++||+||+|+ | +|++|.++. +++++.| ||+ +|||++|
T Consensus 224 ~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G-~GrtG~~~a~~~~~i~p---Div--~lsK~lg 296 (474)
T PLN02624 224 RIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-G-LARTGKMLACDWEEVRP---DVV--ILGKALG 296 (474)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-cCcCcchhhHHhcCCCC---CEE--Eeccccc
Confidence 5678999999999999988 9999999999999999999995 6 788888765 4566644 666 7899997
Q ss_pred cc---cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SM---GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~---GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
.. .|++++++++++.+...... .+.+.+|+.+++++++|+++++++
T Consensus 297 gG~~pigav~~~~~i~~~~~~~~~~--~T~~g~pl~~aaa~aaLe~l~~~~ 345 (474)
T PLN02624 297 GGVIPVSAVLADKDVMLCIKPGEHG--STFGGNPLASAVAMAALQVVQDEK 345 (474)
T ss_pred CCCCcceeeeecHHHHhHhccCCcC--CCCCCCHHHHHHHHHHHHHHHhch
Confidence 43 37788888888877543322 233578999999999999987653
No 56
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.74 E-value=3.8e-17 Score=171.30 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=101.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ ++++++.| ||+ ||||++
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-g-~GrtG~~~a~~~~gv~p---Di~--t~gK~l 278 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ-G-LGRTGKWSSISHFNITP---DLM--SFGKSL 278 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCchHHHHHhcCCCC---CEe--eecccc
Confidence 35789999999999999877 9999999999999999999985 4 68888764 47888876 666 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
| .++|++++++++++.+.. ..+.+|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 279 ~~G~p~gav~~~~~i~~~~~~--~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~ 335 (445)
T PRK08593 279 AGGMPMSAIVGRKEIMESLEA--PAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEK 335 (445)
T ss_pred cCCcccEEEEEcHHHHhhhcc--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6 467889999999998853 235568889999999999999999877554444444
No 57
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.73 E-value=5.7e-17 Score=169.97 Aligned_cols=123 Identities=24% Similarity=0.328 Sum_probs=98.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .+++++.| ||+ +|||+++
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G-~GRtG~~~~~~~~gv~P---Di~--~~gK~l~ 290 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT-G-FGRLGAAFAAERFGVTP---DII--TFAKGLT 290 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-C-CCcCchhhHHHhcCCCC---CEE--Eeccccc
Confidence 4679999999999999998 9999999999999999999995 6 78999886 47888876 676 9999995
Q ss_pred ---cccceeecCHHHHHHHHhcC-----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANS-----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~-----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|.+++++++++.+.... ..+.+|.+.+|+.+++++++|+++++++-.+..++
T Consensus 291 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~ 353 (445)
T PRK09221 291 NGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAE 353 (445)
T ss_pred cCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34677888999998875311 01224556799999999999999987754443333
No 58
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.73 E-value=6.6e-17 Score=166.20 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=140.0
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccC--CCCCcHHHHHHHHHHHHHhCCCCCCCCC----
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLG--FGENTGLCTERSKESVKQSGCALCSPSA---- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLG--l~~~~~~v~~a~~~ai~~yG~g~~~sr~---- 272 (430)
++.++.++.|.++++.+ | +++|+|+|+ |++ +++.+|.+++++++++++++.+....+.
T Consensus 23 ~~~~~~~~~G~~~~d~~-------------g--~~~lD~~~~-~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ 86 (401)
T PRK00854 23 LDVVLTRGEGVWVWDTD-------------G--NRYLDCLSA-YSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLA 86 (401)
T ss_pred CCceEEeeeeCEEEECC-------------C--CEEEEcCcc-hhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHH
Confidence 44677889999998765 6 889998664 643 3444568999999999998764422222
Q ss_pred ---------------------HHHHHHHHHHHhh----------------------cC----------CCCCC-------
Q psy2206 273 ---------------------PSSLEAGLQKALL----------------------EG----------QPHSG------- 292 (430)
Q Consensus 273 ---------------------~~~Le~~L~~~~~----------------------~~----------~p~~~------- 292 (430)
.+++|.+|+-... +| .|.+.
T Consensus 87 ~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~ 166 (401)
T PRK00854 87 PLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFT 166 (401)
T ss_pred HHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCC
Confidence 2444444432100 00 01000
Q ss_pred --------C---------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-ee
Q psy2206 293 --------K---------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EY 350 (430)
Q Consensus 293 --------~---------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~ 350 (430)
. ..++++||+|++++|+|.+.| |++|+++|++||++||+||+|+ | +|.+|.++. ++
T Consensus 167 ~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g-~g~~g~~~~~~~ 244 (401)
T PRK00854 167 PGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-G-LGRTGKLLAEEH 244 (401)
T ss_pred CCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCchHhHHhh
Confidence 0 025689999999999999997 9999999999999999999996 6 577776554 35
Q ss_pred cCCCCCCccEEEeCccchhc---cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 351 FGIDPREVDILMGTYTKSFG---SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G---~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+++.+ |++ ++||+++ .+.|++++++++++.++...+...| +.+|+.+++++++|+.+.+++..+..+++
T Consensus 245 ~g~~~---D~~--~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aa~~a~L~~l~~~~~~~~~~~~ 316 (401)
T PRK00854 245 EGIEA---DVT--LIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTF--GGNPLACAVARAALKVLTEEGMIENAAEM 316 (401)
T ss_pred cCCCC---CEE--EecccccCCccCeEEEEEcHHHHhcccCCCCCCCC--CcCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 66654 666 5689985 2457789999999988754433333 46899999999999998765443443333
No 59
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.73 E-value=9.5e-17 Score=165.25 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=91.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.| |++|+++|++||++||+||+|+ | +|++|..++ ++.++.| ||+ +|||++|
T Consensus 186 ~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g-~g~~g~~~~~~~~~~~p---di~--~~sK~lg 258 (396)
T PRK04073 186 NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-G-LGRTGKLFACDWDNVTP---DMY--ILGKALG 258 (396)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-C-CCcCcHHHHhhhcCCCC---CEE--Eeccccc
Confidence 5678999999999999887 8999999999999999999996 5 677776554 4556544 666 7999998
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+.| |++++++++++.+...... .+.+.+|+.+++++++|+++++++
T Consensus 259 ~gg~~ig~~~~~~~i~~~~~~~~~~--~t~~~~~~~~aaa~aaL~~~~~~~ 307 (396)
T PRK04073 259 GGVFPISCVAANRDILGVFTPGSHG--STFGGNPLACAVSIAALEVLEEEK 307 (396)
T ss_pred CCCCcceEEEEcHHHHhhhcCCCCC--CCCCCCHHHHHHHHHHHHHHHhcC
Confidence 654 8999999999988653333 344578899999999999987654
No 60
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.72 E-value=1.3e-16 Score=166.50 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=97.1
Q ss_pred ceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|++ .+..|.+.| |++|++||++||++||+||+| +| +|++|+++ .+++++.| ||+ +|+|++
T Consensus 206 ~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG-~GrtG~~~a~~~~gv~P---Div--~~gK~l 278 (429)
T PRK06173 206 EIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TG-FGRTGKLFALEHAGVVP---DIM--CIGKAL 278 (429)
T ss_pred cEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cC-CCcCCcchHHHhcCCCC---CEE--Eeehhh
Confidence 5678999997 888887754 999999999999999999999 88 69999987 57889875 777 699999
Q ss_pred c---cccceeecCHHHHHHHHhc-CCccc--ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRAN-SHVRS--YATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~-~~~~~--~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .+.+.+++++++++.+... ...+. .|.+.+|+.|++++++|+++++++-.+..+++.
T Consensus 279 ~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g 342 (429)
T PRK06173 279 TGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIE 342 (429)
T ss_pred hCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5 1345566788899988642 11222 244689999999999999998775544444443
No 61
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.71 E-value=1.6e-16 Score=165.62 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=98.8
Q ss_pred ceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|++ .+..|.+.| |++|+++|++||++||+||+| +|+ |++|.+++ +++++.| ||+ ||+|++
T Consensus 200 ~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~-tG~-GrtG~~~a~~~~gv~P---Di~--t~gK~l 272 (422)
T PRK05630 200 TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA-TGF-GRTGELFATLAAGVTP---DIM--CVGKAL 272 (422)
T ss_pred ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce-eCC-CcCchhhHHHhcCCCC---Cee--eeechh
Confidence 4678999996 887776554 999999999999999999999 785 99998775 7788876 787 999999
Q ss_pred c---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ +++|++++++++++.+.... ..+..|...+|+.+++++++|+++++++-.+..++..
T Consensus 273 ~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g 337 (422)
T PRK05630 273 TGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIE 337 (422)
T ss_pred hcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3 46888999999999886421 1123455689999999999999998775444444443
No 62
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.70 E-value=2.2e-16 Score=161.95 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=90.3
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++|++|++++++|.+.| +++|+++|++||++||+||+|+ | +|.+|.++. +.+++.| |++ +|||+++
T Consensus 178 ~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g-~g~~G~~~~~~~~~~~p---d~~--~~sK~l~ 250 (400)
T PTZ00125 178 NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-G-LGRTGKLLAHDHEGVKP---DIV--LLGKALS 250 (400)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhhHHHhcCCCC---CEE--EEccccc
Confidence 5678999999999999998 9999999999999999999994 5 677777644 4556543 666 7899997
Q ss_pred cc---cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SM---GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~---GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
.. -|++++++++++.+....... +.+.+|+.+++++++|+.+++++
T Consensus 251 ~g~~~ig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~~aa~~~l~~i~~~~ 299 (400)
T PTZ00125 251 GGLYPISAVLANDDVMLVIKPGEHGS--TYGGNPLACAVAVEALEVLKEEK 299 (400)
T ss_pred CCCcCcEEEEEcHHHHhhccCCCCCC--CCCcCHHHHHHHHHHHHHHHhcC
Confidence 42 378999999999886533332 33568888899999999987653
No 63
>PRK07046 aminotransferase; Validated
Probab=99.70 E-value=2.6e-16 Score=165.34 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=98.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG- 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G- 370 (430)
+.+.||+|++.++.|.+.| |++|+++|++||++||+||+++++ +|.. |..+++|+.| ||+ ||+|++|
T Consensus 218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr-~g~G--g~~~~~gv~P---Di~--t~gK~lgg 289 (453)
T PRK07046 218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTIS-SGPG--GYTRAHGLEP---DFL--VVGKPIAG 289 (453)
T ss_pred CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCc-cCCc--chhHHhCCCc---cce--eehhhhcC
Confidence 5678999999999998887 999999999999999999999733 2321 3457789876 777 8999996
Q ss_pred -cccceeecCHHHHHHHHhcC------C-cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhhc
Q psy2206 371 -SMGGYVAGSKSTIDYIRANS------H-VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHSS 429 (430)
Q Consensus 371 -~~GG~v~gs~~li~~l~~~~------~-~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~~ 429 (430)
.+-|++++++++++.+.... . .+..|.+.+|+.+++++++|+++++++..+..+++.++
T Consensus 290 G~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~ 356 (453)
T PRK07046 290 GVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAAR 356 (453)
T ss_pred CCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45577889999999886421 1 12235578999999999999999887666665555443
No 64
>PRK06149 hypothetical protein; Provisional
Probab=99.70 E-value=2.4e-16 Score=179.23 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=98.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc--cceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG--VTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG--~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.++||+|+|+++.|.+.| |++|+++|++||+++|+||+| +| +|++|.. ..+++|+.| ||+ ||+|++
T Consensus 744 ~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~-tG-fGRtG~~~~a~e~~gv~P---Div--t~gK~l 816 (972)
T PRK06149 744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQ-VG-YGRLGHYFWGFEQQGVVP---DII--TMAKGM 816 (972)
T ss_pred ceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeeh-hc-CCccCccchhhhhcCCCC---CEE--Eecccc
Confidence 4678999999999999998 999999999999999999999 35 5777763 247789875 787 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
| .+.|++++++++++.+.... .+..|++.+|+.|++++++|+++++++-.+..+
T Consensus 817 g~G~Pl~av~~~~~i~~~~~~~~-~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~ 872 (972)
T PRK06149 817 GNGHPLGAVITRREIAEALEAEG-YFFSSTGGSPVSCRIGMAVLDVLREEKLQENAR 872 (972)
T ss_pred cCCeeeEEEEEcHHHHhhhccCC-cccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6 35588889999999887522 223356789999999999999998875444443
No 65
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.70 E-value=2.4e-16 Score=163.52 Aligned_cols=122 Identities=22% Similarity=0.303 Sum_probs=93.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++++|.+.| +++|+++|++||++||+||+|+ |+ .+| .+..+++++.| ||+ ||||++|
T Consensus 195 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~--r~g~~~~~~~~~~~p---Di~--t~sK~l~ 266 (423)
T TIGR00713 195 EIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT-GF--RVALGGAQEYFGVEP---DLT--TLGKIIG 266 (423)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-cc--ccCcchhHHHhCCCc---chh--hhhhhhc
Confidence 4679999999999998887 8999999999999999999994 54 223 23346677765 665 8999997
Q ss_pred --cccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|++++++++++.+......+. .+.+.+|+.+++++++|+.+++++-.+..++
T Consensus 267 ~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~ 324 (423)
T TIGR00713 267 GGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDE 324 (423)
T ss_pred CCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 345999999999999875322222 3446899999999999999987643333333
No 66
>PRK07678 aminotransferase; Validated
Probab=99.70 E-value=2.9e-16 Score=164.91 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=98.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|+++|++||++||+||++ +| ||++|..+ ++++|+.| ||+ ||+|++|
T Consensus 213 ~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-tG-fGRtG~~~~~~~~gv~P---Div--t~gK~lg 285 (451)
T PRK07678 213 TIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVI-CG-FGRTGKAFGFMNYGVKP---DII--TMAKGIT 285 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh-hc-CCcCchhHHHHhcCCCC---CEE--Eeecccc
Confidence 5789999999999888876 999999999999999999998 35 67887643 47789876 787 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.+-|.+++++++++.+.... ..+..|.+.+|+.|++++++|+++++++-.+..++.
T Consensus 286 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~ 348 (451)
T PRK07678 286 SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQL 348 (451)
T ss_pred cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 24466788999999886422 123457778999999999999999887654444443
No 67
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.70 E-value=1.9e-16 Score=161.64 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=141.6
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCC-CccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC------
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY-NYLGFGENTGLCTERSKESVKQSGCALCSPSA------ 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~-nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~------ 272 (430)
+.++..+.|+++++.+ | +++|||.|+ .|++|++| |.+++++.+++++++........
T Consensus 12 ~~~~~~~~G~~l~d~d-------------g--~~~lD~~s~~~~~~lG~~-p~v~~a~~~~~~~~~~~~~~~~~~~~~~l 75 (375)
T PRK04260 12 AIEFVKAEGNYLIDTD-------------G--KKYLDFSSGIGVTNLGFH-PQVQQALQKQAGLIWHSPNLYLNSLQEEV 75 (375)
T ss_pred CceEEEeeeCEEEeCC-------------C--CEEEECCCCcccccCCCC-HHHHHHHHHHHHhcCcccCccCCHHHHHH
Confidence 3567889999998865 7 889999886 68999996 57999999999875432111000
Q ss_pred ------------------HHHHHHHHHHH--------h------hcC----------CCC--------------C-CC--
Q psy2206 273 ------------------PSSLEAGLQKA--------L------LEG----------QPH--------------S-GK-- 293 (430)
Q Consensus 273 ------------------~~~Le~~L~~~--------~------~~~----------~p~--------------~-~~-- 293 (430)
.+..+.+++-. . .+| .+. . +.
T Consensus 76 a~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 155 (375)
T PRK04260 76 AQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDL 155 (375)
T ss_pred HHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCH
Confidence 13333222210 0 000 000 0 00
Q ss_pred -------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEE
Q psy2206 294 -------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDIL 361 (430)
Q Consensus 294 -------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv 361 (430)
+.+.++|++|++.+++|.+.+ |++|.++|++||+++|+||+|+ | +|++|.++. +.+++.| ||+
T Consensus 156 ~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g-~g~~g~~~~~~~~~~~p---di~ 230 (375)
T PRK04260 156 NSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-G-MGRTGKLYAFEHYGIEP---DIF 230 (375)
T ss_pred HHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccchhhhHhhCCCC---CEE
Confidence 124579999999999999876 9999999999999999999995 6 688887644 5677765 555
Q ss_pred EeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 362 MGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 362 ~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
||||+++ .+.|++++++++++.+.... +..+...+|+.+++++++|+.++.++-.++.+++.
T Consensus 231 --t~sK~l~~G~~ig~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 294 (375)
T PRK04260 231 --TLAKGLANGVPVGAMLAKSSLGGAFGYGS--HGSTFGGNKLSMAAASATLDIMLTAGFLEQALENG 294 (375)
T ss_pred --EecccccCCcceEEEEEcHHHHhhcCCCC--CCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999996 35699999999998876432 23345568889999999999987654444444443
No 68
>PRK07480 putative aminotransferase; Validated
Probab=99.70 E-value=3.8e-16 Score=164.22 Aligned_cols=121 Identities=27% Similarity=0.359 Sum_probs=96.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|++||++||++||+||+++ | +|++|.+++ +++|+.| ||+ +|+|++|
T Consensus 219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l~ 291 (456)
T PRK07480 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVIC-G-FGRTGEWFGSQHFGIKP---DLM--TIAKGLT 291 (456)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCcchhhhhhcCCCC---Cee--eeehhhc
Confidence 4678999999999998876 9999999999999999999984 5 689998754 7889876 777 9999996
Q ss_pred c---ccceeecCHHHHHHHHhc-C-CcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 S---MGGYVAGSKSTIDYIRAN-S-HVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~-~-~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
. +-|.+++++++++.+... . ..+..|.+.+|+.|++++++|+++++++-.+..
T Consensus 292 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~ 349 (456)
T PRK07480 292 SGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERV 349 (456)
T ss_pred cCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2 446677889999988421 1 123346678999999999999999887654444
No 69
>PRK07482 hypothetical protein; Provisional
Probab=99.70 E-value=5.6e-16 Score=163.15 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=99.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|++||++||++||+||++ +| ||++|.+++ +++|+.| ||+ +++|++|
T Consensus 220 ~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~-tG-fGRtG~~~a~~~~gv~P---Div--~~gKgl~ 292 (461)
T PRK07482 220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVV-TG-FGRLGSMFGSDHYGIEP---DLI--TVAKGLT 292 (461)
T ss_pred cEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc-cC-CCcCcchhhHHhcCCCC---CEE--EEccccc
Confidence 4689999999988888765 999999999999999999998 56 789998764 7889876 788 8999996
Q ss_pred c---ccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 S---MGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
. +-|.+++++++++.+... ...+..|...+|+.|++++++|+++++++-.+..++..+
T Consensus 293 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~ 358 (461)
T PRK07482 293 SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGA 358 (461)
T ss_pred cCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 335567788898877632 112334667899999999999999988765555544433
No 70
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.69 E-value=5.4e-16 Score=162.93 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=98.5
Q ss_pred ceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+ |.+..|.+.| |++|+++|++||++||+||++ +| +|++|..++ +++|+.| ||+ ||+|++
T Consensus 221 ~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-TG-~GRtG~~fa~~~~gv~P---Div--t~gKgl 293 (453)
T PRK06943 221 KIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIA-VG-CGRTGTFFACEQAGVWP---DFL--CLSKGI 293 (453)
T ss_pred ceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hC-CCCCcchhHHHhCCCCC---CeE--eeehhh
Confidence 567899999 4888887665 999999999999999999998 46 689998765 7889876 788 999999
Q ss_pred c---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+-|.+++++++++.+.... ..+..|.+.+|+.|++++++|+++++++-.+..+++.+
T Consensus 294 ~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~ 359 (453)
T PRK06943 294 SGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSA 359 (453)
T ss_pred ccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6 24566788999998875311 11233556799999999999999988865555554443
No 71
>PRK05965 hypothetical protein; Provisional
Probab=99.69 E-value=5.1e-16 Score=163.37 Aligned_cols=125 Identities=23% Similarity=0.189 Sum_probs=99.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|+++|++||++||+||+. +| +|++|.+++ +++|+.| ||+ +|+|++|
T Consensus 215 ~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~-tG-fGRtG~~~a~~~~gv~P---Div--~~gKgl~ 287 (459)
T PRK05965 215 NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVI-TG-FGRTGPLFACEAEGVVP---DLM--TVAKGLT 287 (459)
T ss_pred ceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-cc-CccCchhhhHhhcCCCC---CeE--Eechhhc
Confidence 4688999999998888765 999999999999999999998 46 788988764 7889876 788 9999996
Q ss_pred ---cccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
.+-|.+++++++++.+... ...+..|.+.+|+.|++++++|+++++++-.+..++..
T Consensus 288 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g 352 (459)
T PRK05965 288 SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAG 352 (459)
T ss_pred cCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2446678899999887532 11233466789999999999999998886555444443
No 72
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.69 E-value=5.8e-16 Score=162.88 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=99.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|.+..|.+.| |++|+++|++||++||+||+|+ | +|++|.+++ +++++.| ||+ +|+|++
T Consensus 221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv~P---Div--~~gK~l 293 (457)
T PRK05639 221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-G-IGRTGKWFASEWFEVKP---DLI--IFGKGV 293 (457)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcCchHHHHHhcCCCC---CEE--Eechhh
Confidence 45789999999998888765 9999999999999999999996 7 899998754 7889865 788 699999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
| .+-|++++++++++.. ...+.+|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 294 ~gG~pi~av~~~~~i~~~~---~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~ 349 (457)
T PRK05639 294 ASGMGLSGVIGRKELMDLT---SGSALLTPAANPVISAAAEATLEIIEEENLLKNALKV 349 (457)
T ss_pred cCCCcceeEEehHHHHhhc---CCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 6 3447888999999832 2234567789999999999999999887655544443
No 73
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.68 E-value=6.8e-16 Score=160.67 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=97.8
Q ss_pred CceEEEEEcCccCCCCcc-cC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSI-VR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i-~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.. .| |++|+++|++||++||+||+|+ | +|++|.+++ +++++.| ||+ ||||++
T Consensus 197 ~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g-~gr~g~~~~~~~~~~~p---Div--~~sK~l 269 (421)
T PRK06777 197 DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-G-FARTGKLFAMEYYDVKP---DLI--TMAKSL 269 (421)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CccCCchhhhhhcCCCC---CEE--eeehhh
Confidence 356899999999999964 44 9999999999999999999996 6 688887543 6777754 666 899999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+.|++++++++++.+..... ..+.+.+|+.+++++++|+++++++-.++.+++.+
T Consensus 270 ~~G~pigav~~~~~i~~~~~~~~~--~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~ 328 (421)
T PRK06777 270 GGGMPISAVVGRAEVMDAPAPGGL--GGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGA 328 (421)
T ss_pred cCCCceEEEEEcHHHHhccCCCCC--CCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7 234789999999998865433 34556799999999999999987655555554443
No 74
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.68 E-value=5.9e-16 Score=162.13 Aligned_cols=123 Identities=27% Similarity=0.342 Sum_probs=97.8
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.| |++|+++|++||+++|+||+|+ | +|++|.++ .+++++.| ||+ ||||++
T Consensus 220 ~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G-~gr~G~~~a~~~~gv~p---Div--t~~K~l 292 (441)
T PRK05769 220 EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-G-MGRTGKMFAIEHFGVEP---DII--TLAKAI 292 (441)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccceehhhccCCCC---CEE--EEcccc
Confidence 35789999999999999998 9999999999999999999996 6 78888875 47788865 777 899999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+.|++++++++++.+. ..+. .+.+.+|+.+++++++|+++++ +-.+..+++.+
T Consensus 293 ~~G~p~gav~~~~~i~~~~~-~~~~--~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~ 349 (441)
T PRK05769 293 AGGLPLGAVIGRAELMFLPP-GSHA--NTFGGNPVAAAAALATLEELEE-GLLENAQKLGE 349 (441)
T ss_pred cCCcccEEEEEehhhhhcCC-CCCC--CCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 7 34588899999886543 2223 3445689999999999999977 54455544433
No 75
>PRK07036 hypothetical protein; Provisional
Probab=99.68 E-value=1.2e-15 Score=160.90 Aligned_cols=127 Identities=24% Similarity=0.296 Sum_probs=99.2
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-e-ecCCCCCCccEEEeCccch
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-E-YFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e-~~g~~~~~~dIv~~TlSKa 368 (430)
.+.+.||+|+|.++.|.+.| |++|+++|++||+++|+||++ +| +|++|..++ + ++|+.| ||+ ||+|+
T Consensus 219 ~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~-tG-fGRtG~~~~~~~~~gv~P---Div--t~gK~ 291 (466)
T PRK07036 219 DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVV-TG-FGRLGHFFASEAVFGIQP---DII--TFAKG 291 (466)
T ss_pred CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeech-hC-CCcCchhhhhhhhcCCCC---CEE--EEccc
Confidence 34679999999999999887 999999999999999999998 45 788886443 4 689876 777 99999
Q ss_pred hcc---ccceeecCHHHHHHHHhc---C--CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 369 FGS---MGGYVAGSKSTIDYIRAN---S--HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 369 ~G~---~GG~v~gs~~li~~l~~~---~--~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
+|. +-|.+++++++++.+... . ..+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 292 l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~ 359 (466)
T PRK07036 292 LTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGP 359 (466)
T ss_pred cccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 962 456777899999987632 1 11223556799999999999999987765555555443
No 76
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.68 E-value=9.6e-16 Score=159.72 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=86.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.+ |++|+++|++||++||+||+|+ | +|++|.++. +++++.| ||+ ||||++|
T Consensus 198 ~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GrtG~~~~~~~~~v~P---Di~--t~~K~l~ 270 (425)
T PRK09264 198 LPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-G-CGRTGTFFSFERAGITP---DIV--TLSKSIS 270 (425)
T ss_pred ceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-C-CccccHHHHHhhcCCCC---CEE--EeccccC
Confidence 4679999999999997653 9999999999999999999996 6 799987754 6778865 666 9999997
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH-HHHHccC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM-RIIMGLE 418 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL-~~l~~~~ 418 (430)
..| |++++++++. .+.... +..+.+.+|+.++++++++ +++++++
T Consensus 271 ~~G~pigav~~~~~i~-~~~~~~--~~~T~~gnp~~~aaa~a~l~~~~~~~~ 319 (425)
T PRK09264 271 GYGLPMALVLIKPELD-VWKPGE--HNGTFRGNNLAFVTATAALEEYWSDDA 319 (425)
T ss_pred CCccceEEEEEchhhh-ccCCCc--cCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 645 8888888863 332211 2234456788888888999 5655543
No 77
>PRK07483 hypothetical protein; Provisional
Probab=99.68 E-value=1e-15 Score=160.40 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=98.2
Q ss_pred ceEEEEEcCccC-CCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFS-MDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~s-m~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+|.+ ..|.+.| |++|+++|++||++||+||+++ | +|++|..++ +++++.| ||+ ||+|++
T Consensus 199 ~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l 271 (443)
T PRK07483 199 TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC-G-MGRTGTLFACEEDGVAP---DLV--TIAKGL 271 (443)
T ss_pred ceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee-C-cccCcHHHHHhhcCCCC---Cee--eehhhh
Confidence 457899999997 4677665 9999999999999999999984 6 689998765 7889876 787 999999
Q ss_pred c---cccceeecCHHHHHHHHhcCC--cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSH--VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~--~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
| .+-|.+++++++++.+..... .+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 272 ~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g 334 (443)
T PRK07483 272 GAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARG 334 (443)
T ss_pred ccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6 255777889999988764221 123455679999999999999998876555544443
No 78
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.68 E-value=1.1e-15 Score=158.88 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=94.4
Q ss_pred ceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+ +.+..|...+ |++|+++|++||++||+||+| +| +|++|.+++ +++++.| ||+ |+||++
T Consensus 199 ~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tg-~gr~G~~~a~~~~~v~p---Di~--~~~K~l 271 (423)
T PRK05964 199 EIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA-TG-FGRTGTLFACEQAGVSP---DIM--CLSKGL 271 (423)
T ss_pred cEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hC-CCcCcchhHHHhcCCCC---Cee--eeehhh
Confidence 456899999 4666676664 999999999999999999999 56 688887754 7778765 676 899999
Q ss_pred c---cccceeecCHHHHHHHHhc--CCcccc--cCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRAN--SHVRSY--ATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~--~~~~~~--s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .+.|++++++++++.+... ...+.+ |...+|+.+++++++|+++++++-.++..+..
T Consensus 272 ~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g 336 (423)
T PRK05964 272 TGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALS 336 (423)
T ss_pred hcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5 2457788999999988642 122223 33579999999999999998765444444443
No 79
>PRK06917 hypothetical protein; Provisional
Probab=99.67 E-value=1.5e-15 Score=159.37 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=98.7
Q ss_pred ceEEEEEcCccCCC-CcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMD-GSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~-G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|++.... |.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ +|+|++
T Consensus 199 ~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-G-fGRtG~~~a~~~~gv~P---Di~--~~gK~l 271 (447)
T PRK06917 199 HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-G-LGRTGAMFAMEHWGVEP---DIM--TLGKGL 271 (447)
T ss_pred ceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-C-cCcccchhhHHhcCCCC---CEE--Eeeehh
Confidence 47899999998754 45554 9999999999999999999995 7 799998765 7889876 776 999999
Q ss_pred c---cccceeecCHHHHHHHHhcCCcc--cccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSHVR--SYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~~~--~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+.|++++++++++.+......+ ..|.+.+|+.+++++++|+++++++-.+..+++.+
T Consensus 272 ~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~ 335 (447)
T PRK06917 272 GAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGE 335 (447)
T ss_pred ccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 6 26678889999999886533222 23556799999999999999987765555444433
No 80
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.67 E-value=9.1e-16 Score=160.72 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=98.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|.++ .+++++.| ||+ |++|++|
T Consensus 219 ~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~fa~~~~gv~P---Div--~~gK~l~ 291 (443)
T PRK06058 219 NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-G-FARTGAWFACEHEGIVP---DLI--TTAKGIA 291 (443)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcChhhhHHHhcCCCC---CEE--EEccccc
Confidence 4678999999999998875 9999999999999999999995 6 68888765 47788876 777 8899996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.+-|++++++++++.+.... +..|.+.+|+.+++++++|+++++++-.+..+++
T Consensus 292 ~G~Pi~av~~~~~i~~~~~~~~--~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~ 347 (443)
T PRK06058 292 GGLPLSAVTGRAEIMDAPHPGG--LGGTYGGNPVACAAALAAIETIEEDDLVARARQI 347 (443)
T ss_pred CCCccEEEEEcHHHHhhccCCC--CCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 33478889999999886543 3356678999999999999999877655544443
No 81
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.67 E-value=4.3e-16 Score=157.82 Aligned_cols=124 Identities=25% Similarity=0.322 Sum_probs=98.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+...||+|++.+..|.+.+ |++|+++|++||++||+||++ +| +|++|..++ +++++.| ||+ ||+|+++
T Consensus 177 ~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~-tG-~gRtG~~~a~~~~gv~P---Div--~~gK~l~ 249 (339)
T PF00202_consen 177 EIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQ-TG-FGRTGKFFASEHYGVDP---DIV--TFGKGLG 249 (339)
T ss_dssp GEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETT-TT-TTTTSSSSGHHHHTSSS---SEE--EEEGGGG
T ss_pred cEEEEEEeccccccCccccccchhhehcccccccccceeccccc-cc-ccccCCccceecccccC---ccc--ccccchh
Confidence 5789999999998887765 999999999999999999998 46 688888664 7899876 788 8999995
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.+-|.+++++++.+.+.... +..|...+|+.+++++++|+++++++-.+..+++.+
T Consensus 250 gG~p~sav~~~~~i~~~~~~~~--~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~ 307 (339)
T PF00202_consen 250 GGLPISAVLGSEEIMEAFQPGS--HGSTFGGNPLSCAAALATLEILEEEDLLERVRELGE 307 (339)
T ss_dssp TTSSEEEEEEEHHHHTTSCTTS--STCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhhcccccccchhhccccccc--cccccccchHhhhhhhhHHHhhccHHHHHHHHHHHH
Confidence 34467889999998775444 334556799999999999999998866555555443
No 82
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.66 E-value=1.5e-15 Score=158.35 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=95.3
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.+ +++|+++|++||+++|+||+|+ | +|++|.++ .+++++.| ||+ ||||++
T Consensus 197 ~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~a~~~~gv~p---Di~--tlsK~l 269 (425)
T PRK07495 197 QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-G-FARTGKLFAMEHHEVAA---DLT--TMAKGL 269 (425)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-c-CCcCCCceeecccCCCC---CEE--eehhhh
Confidence 35789999999999886543 9999999999999999999995 6 78888764 46677765 665 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+ .+.|++++++++++.+.... +..+.+.+|+.+++++++|+++++++-.+..
T Consensus 270 ~~G~pigav~~~~~i~~~~~~~~--~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~ 323 (425)
T PRK07495 270 AGGFPLAAVTGRAEIMDAPGPGG--LGGTYGGNPLGIAAAHAVLDVIEEEDLCERA 323 (425)
T ss_pred cCCccceEEEEcHHHHhccCCCC--cCCCCCCCHHHHHHHHHHHHHHHhchHHHHH
Confidence 6 35588999999998876533 3345578999999999999999876543333
No 83
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.66 E-value=2.7e-15 Score=157.31 Aligned_cols=124 Identities=24% Similarity=0.307 Sum_probs=99.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|++.+++|.+.| |++|.++|++||++||+||+|+ | +|++|.++. +++++.| ||+ ||||++
T Consensus 203 ~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~G~~~a~~~~~~~p---Dii--tlsK~l 275 (443)
T PRK08360 203 EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-G-LGRTGKWFAIEHFGVEP---DII--TLGKPL 275 (443)
T ss_pred CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCccchhhhhcCCCC---CEE--Eecccc
Confidence 45789999999999998776 9999999999999999999996 4 678887653 6678765 666 899999
Q ss_pred cc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 GS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
|. +.|++++++++++.+.... +.++.+.+|+.+++++++|+++++++-.+..++..
T Consensus 276 ~~G~pigav~~~~~i~~~~~~~~--~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g 333 (443)
T PRK08360 276 GGGLPISATIGRAEIMDSLPPLA--HAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLG 333 (443)
T ss_pred cCCceeEEEEEcHHHHhhhcCCC--CCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 73 3589999999999886432 44677789999999999999998775544444433
No 84
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.66 E-value=2.2e-15 Score=158.85 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=97.9
Q ss_pred ceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+ |.+..|.+.| |++|+++|++||++||+||++ +| +|++|..++ +++|+.| ||+ +|+|++
T Consensus 214 ~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~-TG-fGRtG~~~a~~~~gv~P---Div--~~gKgl 286 (466)
T PRK07030 214 EIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIA-VG-FGRTGTMFACEQAGIRP---DFL--CLSKAL 286 (466)
T ss_pred ceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh-hC-cCccccchHHHhcCCCC---CEE--eeehhc
Confidence 567899999 6888787665 999999999999999999998 46 688888665 7889876 787 999998
Q ss_pred c---cccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+-|.+++++++++.+... ...+..|.+.+|+.|++++++|+++++++-.+..++..+
T Consensus 287 ~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~ 353 (466)
T PRK07030 287 TGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALAR 353 (466)
T ss_pred cCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6 2456678899999877531 112234556799999999999999988865555544433
No 85
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.66 E-value=1.6e-15 Score=157.05 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=99.6
Q ss_pred CCceEEEEEcCccCC-CCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccc
Q psy2206 294 PWRKILIVVEGIFSM-DGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTK 367 (430)
Q Consensus 294 ~~~~~lIi~E~v~sm-~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSK 367 (430)
|++.+.+|+|+|..- .|.+.| |++|++||++||++||+||+- +| ||++|.-+ ++++|+.| ||+ |++|
T Consensus 212 ~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~-tG-FGRTG~~FA~e~~gi~P---Di~--~~aK 284 (449)
T COG0161 212 PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA-TG-FGRTGKMFACEHAGIVP---DIL--CLAK 284 (449)
T ss_pred cccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecce-eC-CCcCchhhhhhhcCCCC---Cee--eecc
Confidence 467899999999776 777766 999999999999999999995 67 89999877 48999987 788 9999
Q ss_pred hhc---cccceeecCHHHHHHHHhc-C--CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 368 SFG---SMGGYVAGSKSTIDYIRAN-S--HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 368 a~G---~~GG~v~gs~~li~~l~~~-~--~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
++. ++-|.++.+.++.+.+... . ..+.+|.+.+|+.||++++.|+++++++-.++.++
T Consensus 285 GLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~ 348 (449)
T COG0161 285 GLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAE 348 (449)
T ss_pred cccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 985 1224456778888887764 2 22345777899999999999999998865544443
No 86
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.65 E-value=1.4e-15 Score=160.63 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||+++.+. + .+.+|+.+++|+|+++ +++|.++|++||++|++|+||++|+++..+.. ..
T Consensus 172 ~d~Le~~l~~~---------~--pklIv~~~S~~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~--~p-- 233 (475)
T PLN03226 172 YDKLEKKAMLF---------R--PKLIIAGASAYPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAA--SP-- 233 (475)
T ss_pred HHHHHHHHhhc---------C--CeEEEEecCcCCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCC--CC--
Confidence 78899988652 1 1344555999998875 55788999999999999999999998765432 11
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHH-----------HH--HHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTI-----------DY--IRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li-----------~~--l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+ ..+||+++|++|++ |..||+|+++++++ ++ +.+.+....++++++|..+++..++|+.++++.
T Consensus 234 ~--~~~Div~~t~hK~L~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~ 311 (475)
T PLN03226 234 F--EYCDVVTTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPE 311 (475)
T ss_pred C--CCCeEEEecCcccccCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcC
Confidence 2 25799999999999 88999999988665 44 344455556788888899998899999987664
No 87
>PRK07481 hypothetical protein; Provisional
Probab=99.65 E-value=2.7e-15 Score=157.48 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=100.1
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|.+..|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ +++|++
T Consensus 212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gKgl 284 (449)
T PRK07481 212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVT-G-FGRTGSWFGSRGWGVKP---DIM--CLAKGI 284 (449)
T ss_pred CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhh-C-cCcCchhhHhhhcCCCC---CEE--EEeecc
Confidence 34789999999999998776 9999999999999999999984 6 788887654 7788876 777 999999
Q ss_pred cc---ccceeecCHHHHHHHHhcC-----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 GS---MGGYVAGSKSTIDYIRANS-----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~~~-----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
|. +-|.+++++++++.+.... ..+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 285 ~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~ 351 (449)
T PRK07481 285 TSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGA 351 (449)
T ss_pred cCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 62 4567888999999886421 12234556799999999999999988765555554443
No 88
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.65 E-value=2.9e-15 Score=152.18 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=131.0
Q ss_pred ccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHhCCCCCC-C-CC
Q psy2206 198 CFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCALCS-P-SA 272 (430)
Q Consensus 198 ~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~-s-r~ 272 (430)
.++..+.++.|.+++..+ | +++|||+| |||||++ + |.+++++.+++.+++..... + ..
T Consensus 8 ~~~~~~~~~~g~~~~~~~-------------g--~~~id~~~~~~~~~lG~~-~-p~v~~a~~~~~~~~~~~~~~~~~~~ 70 (379)
T TIGR00707 8 RLPVKIVRGKGAYVYDVN-------------G--KEYLDFVAGIAVNSLGHA-H-PKLVEALKEQLEKLVHVSNLYYTEP 70 (379)
T ss_pred CCCccEEEeecCEEEeCC-------------C--CEEEEcCcchhhccCCCC-C-HHHHHHHHHHHhhccccccccCCHH
Confidence 355678999999998764 6 88999999 8999984 4 58899999999886532110 1 10
Q ss_pred -----------------------HHHHHHHHHHH-------------hh------c----------C--------CC---
Q psy2206 273 -----------------------PSSLEAGLQKA-------------LL------E----------G--------QP--- 289 (430)
Q Consensus 273 -----------------------~~~Le~~L~~~-------------~~------~----------~--------~p--- 289 (430)
.+.++.+++-. .+ + + .|
T Consensus 71 ~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~ 150 (379)
T TIGR00707 71 QEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVP 150 (379)
T ss_pred HHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCC
Confidence 12222222100 00 0 0 00
Q ss_pred CCC-C------------CCceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 290 HSG-K------------PWRKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 290 ~~~-~------------~~~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
... . ..++.+|+++++.+++|... ++++|.++|++|++++|+||+|+ + +|.+|.+.. +..
T Consensus 151 ~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~-~~~~g~~~~~~~~ 228 (379)
T TIGR00707 151 GFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-G-IGRTGKFFAYEHY 228 (379)
T ss_pred CceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhhhHHhc
Confidence 000 0 01356888899999988653 38999999999999999999996 4 566665443 344
Q ss_pred CCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
++.+ |++ ||||+++ .| ||+++++++++.++.......+ +.+|+.++++.++|+.+++.
T Consensus 229 ~~~~---d~~--t~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aa~aaL~~~~~~ 289 (379)
T TIGR00707 229 GIEP---DII--TLAKGLG-GGVPIGATLAKEEVAEAFTPGDHGSTF--GGNPLACAAALAVLEVIEKE 289 (379)
T ss_pred CCCC---CEE--EEccccc-CCcccEEEEEcHHHHhhhcCCCCCCCC--CCCHHHHHHHHHHHHHHHhh
Confidence 5543 555 8999998 54 8999999999998764433333 46788888899999987643
No 89
>PRK06148 hypothetical protein; Provisional
Probab=99.65 E-value=2.9e-15 Score=170.93 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=100.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-cc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
..+.||+|+|++..|.+.| |++|+++|++||+++|+||++ +| ||++|. .+ .+++|+.| ||+ |++|++
T Consensus 784 ~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVq-tG-fGRtG~~~~a~e~~gv~P---Div--t~gK~l 856 (1013)
T PRK06148 784 GPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQ-VG-FGRVGSHWWAFETQGVVP---DIV--TMGKPI 856 (1013)
T ss_pred ceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecc-cC-CCCCCCcchhhhhcCCCc---cee--eecccc
Confidence 4788999999999998887 999999999999999999998 45 688886 33 47889876 787 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+-|.+++++++++.+.... .+..|.+.+|+.|++++++|++|++++-.+..+++.+
T Consensus 857 ggG~Plgav~~~~ei~~~~~~g~-~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~ 916 (1013)
T PRK06148 857 GNGHPMGAVVTTREIADSFDNGM-EYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGN 916 (1013)
T ss_pred cCCcceEEEEEcHHHHhhccCCC-ccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 6 34477888999999876422 2445667899999999999999988865555554443
No 90
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.65 E-value=3.2e-15 Score=157.39 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=97.0
Q ss_pred CceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccch
Q psy2206 295 WRKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 295 ~~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa 368 (430)
.+.+.||+|+ |.+..|.+.| |++|+++|++||++||+||++ +| +|++|.+++ +++|+.| ||+ +|+|+
T Consensus 222 ~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-TG-~GRtG~~~a~~~~gv~P---Div--~~gK~ 294 (460)
T PRK06916 222 EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVA-TG-FGRTGKMFACEHENVTP---DIM--TAGKG 294 (460)
T ss_pred CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hC-CCcCchhhHHHhcCCCC---Cee--eeehh
Confidence 3568899999 6888887764 999999999999999999998 67 689998754 7889876 777 99999
Q ss_pred hc---cccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 369 FG---SMGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 369 ~G---~~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+| .+-|.+++++++++.+... ...+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 295 l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g 361 (460)
T PRK06916 295 LTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKT 361 (460)
T ss_pred hhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 96 2345678899998876521 11122355579999999999999998776544444443
No 91
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.64 E-value=3.2e-15 Score=155.12 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=92.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+..+||+|++....|.+.| |++|+++|++||++||+||+|+ | +|++|..+. +.+++.| ||+ ||||++|
T Consensus 187 ~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~a~~~~~~~p---di~--t~~K~l~ 259 (408)
T PRK04612 187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-G-MGRTGTLFAHWQEQVTP---DIV--TLAKALG 259 (408)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCCchhhhhhcCCCC---CEE--EEcchhc
Confidence 5678999999987777664 9999999999999999999996 5 788776543 2334433 554 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
. +-|++++++++++.+....+.. +.+.+|+.+++++++|+++++++-.+..+++.
T Consensus 260 ~G~piga~~~~~~~~~~~~~~~~~~--t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g 316 (408)
T PRK04612 260 GGFPIGAMLAGPKVAETMQFGAHGT--TFGGNPLAAAVARVALRKLASPQIAANVARQS 316 (408)
T ss_pred CCCceEEEEECHHHHhhhcCCCcCC--CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 3367778888988887644443 34478999999999999998765444444433
No 92
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.64 E-value=6.3e-15 Score=150.40 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.|++.... + ..++.+|+++++++++|++.|+++|.++|++||++||+||||+.|.++..+.
T Consensus 129 ~~~l~~~l~~~~~~-----~-~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~------- 195 (370)
T TIGR02539 129 PEGYGEVIEEVEDE-----S-GKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAK------- 195 (370)
T ss_pred HHHHHHHHHHhhhc-----c-CCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHH-------
Confidence 68888888642100 0 1245688889999999999999999999999999999999999875543321
Q ss_pred CCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhcCCcccc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRANSHVRSY 395 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~~~~~~~ 395 (430)
. .++||+++||||++++.| ||+++++++++.++....++.+
T Consensus 196 -~-~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~ 238 (370)
T TIGR02539 196 -E-IGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPV 238 (370)
T ss_pred -H-cCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCcc
Confidence 1 246899999999999777 9999999999999987665443
No 93
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.63 E-value=5.4e-15 Score=153.76 Aligned_cols=120 Identities=21% Similarity=0.201 Sum_probs=93.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|.++.|.+.| +++|+++|++||++||+||+++ | +|++|... .+++++.| ||+ ||||++
T Consensus 196 ~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-g-~gr~g~~~a~~~~~~~p---Di~--~lsK~l 268 (420)
T TIGR00700 196 NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQT-G-FARTGAMFACEHEGPEP---DLI--TTAKSL 268 (420)
T ss_pred CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CcccchhHHHhhcCCCC---CEE--Eeeccc
Confidence 35689999999999998777 9999999999999999999985 4 56777543 35677654 666 799999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+ .+-|++++++++++.+....+. .+.+.+|+.+++++++|+++++++-.+..
T Consensus 269 ~~G~pig~v~~~~~i~~~~~~~~~~--~T~~~~pl~~aaa~a~l~~l~~~~~~~~~ 322 (420)
T TIGR00700 269 ADGLPLSGVTGRAEIMDAPAPGGLG--GTYAGNPLACAAALAVLAIIESEGLIERA 322 (420)
T ss_pred cCCcceEEEEecHHHHhhcCCCCcC--CCCCcCHHHHHHHHHHHHHHHhccHHHHH
Confidence 7 2338899999999887643332 35567899999999999998776543333
No 94
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.63 E-value=6.7e-15 Score=155.44 Aligned_cols=126 Identities=20% Similarity=0.212 Sum_probs=97.0
Q ss_pred CceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccch
Q psy2206 295 WRKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 295 ~~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa 368 (430)
.+.+.||+|+ +.+..|.+.| |++|+++|++||++||+||++ +| +|++|..++ +++|+.| ||+ +|+|+
T Consensus 235 ~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~-TG-fGRtG~~~a~e~~gv~P---Div--~~gKg 307 (472)
T PRK08742 235 GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA-TG-FGRTGTLFACEQAGVMP---DLL--CLSKG 307 (472)
T ss_pred CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hC-CCCCccchHHHhcCCCC---CEE--EEccc
Confidence 3567899999 5877787655 999999999999999999998 46 788887764 7889876 788 99999
Q ss_pred hc---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 369 FG---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 369 ~G---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+| .+-|.+++++++++.+.... ..+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 308 l~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g 373 (472)
T PRK08742 308 LTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTA 373 (472)
T ss_pred ccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 96 24566778999988765311 1122355679999999999999998886554444443
No 95
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.62 E-value=6.4e-15 Score=150.70 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=89.2
Q ss_pred ceEEEEEcCccCCCCccc-C---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIV-R---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~-~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++.+++|... + +++|+++|++||++||+||+|+ | +|.+|.+.+ +.+++.| ||+ ||||+++
T Consensus 182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g-~g~~g~~~~~~~~~~~p---di~--t~sK~~~ 254 (396)
T PRK02627 182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT-G-MGRTGKLFAYQHYGIEP---DIM--TLAKGLG 254 (396)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-C-CCccCceeeehhcCCCC---CEE--EEcchhh
Confidence 567899999999988433 2 9999999999999999999997 5 566665433 4556543 555 8999998
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
.| |++++++++++.+...... .+.+.+|+.+++++++|+.+.+++..+..+
T Consensus 255 -~G~rig~~~~~~~~~~~~~~~~~~--~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~ 308 (396)
T PRK02627 255 -GGVPIGAVLAKEKVADVFTPGDHG--STFGGNPLACAAALAVIEIIEEEGLLENAA 308 (396)
T ss_pred -CCcccEEEEEcHHHHhccCCCCCC--CCCCCCHHHHHHHHHHHHHHhhccHHHHHH
Confidence 44 8899999999887653322 344578899999999999886654333333
No 96
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.62 E-value=7.7e-15 Score=152.82 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=95.7
Q ss_pred ceEEEEEcCccCCCCccc-C---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIV-R---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~-~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+++++.|.+. | +++|+++|++||++||+||+++ | +|++|.+++ +++++.| || .||||+++
T Consensus 198 ~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g-~gr~G~~~a~~~~~~~p---Di--~t~gK~l~ 270 (421)
T PRK09792 198 QVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQS-G-FARTGKLFAMDHYADKP---DL--MTMAKSLA 270 (421)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCCchhHHHhcCCCC---cE--EEeehhhc
Confidence 467999999999999754 5 9999999999999999999985 4 678887654 6677654 65 49999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+-|++++++++++.+.... +..|.+.+|+.+++++++++++++++.....++
T Consensus 271 ~G~pigav~~~~~i~~~~~~~~--~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~ 325 (421)
T PRK09792 271 GGMPLSGVVGNANIMDAPAPGG--LGGTYAGNPLAVAAAHAVLNIIDKESLCERANQ 325 (421)
T ss_pred CCCceEEEEEcHHHHhccCCCC--cCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34588999999998876433 334557899999999999999987654444443
No 97
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.62 E-value=9e-15 Score=149.70 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=90.4
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|++.++.|.+.| |++|.++|++||++||+||+++ |+ ++|..+. +++++.| ||+ +|+|++|
T Consensus 162 ~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~--RtG~~~a~~~~gv~P---Div--~~gK~lg 233 (364)
T PRK04013 162 ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-GL--RTGKFLAIEHYKVEP---DIV--TMGKGIG 233 (364)
T ss_pred CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC--CCCchhHHHhcCCCC---CEE--Eeccccc
Confidence 4678999999998887664 9999999999999999999995 64 7887554 6788876 777 9999996
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
. +-|.++.+.++. . ..+..|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 234 gG~P~~a~~~~~~~~----~--~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~ 285 (364)
T PRK04013 234 NGVPVSLTLTNFDVE----R--GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK 285 (364)
T ss_pred CCceeEEEEeccccc----C--CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 335566665541 1 123456678999999999999999888655544443
No 98
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.62 E-value=1.4e-14 Score=152.75 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=94.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|.++|++||++||+||++ +| ||++|.+++ +++|+.| ||+ +++|++|
T Consensus 231 ~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~-tG-fGRtG~~~a~e~~gv~P---Div--~~gKglg 303 (464)
T PRK06938 231 LPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ-SG-FGRTGKMFAFEHAGIIP---DVV--VLSKAIG 303 (464)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCcHHHHHHhcCCCC---CEE--Eeecccc
Confidence 4689999999998888765 999999999999999999998 46 688887654 7899976 788 9999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.+-|.+++++++ +.+... .+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 304 gG~PlsAv~~~~~~-~~~~~~--~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~ 360 (464)
T PRK06938 304 GSLPLAVVVYREWL-DTWQPG--AHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGE 360 (464)
T ss_pred CCCceEEEeehhHh-hccCCC--CCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 233566677764 544322 2334566899999999999999988765555554433
No 99
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.61 E-value=1.4e-14 Score=150.38 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=87.3
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|.++.|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ ||||++|
T Consensus 194 ~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GRtG~~~a~~~~~v~P---Di~--~~~K~lg 266 (412)
T TIGR02407 194 LPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA-G-CGRTGTFFSFEPAGIEP---DIV--CLSKSIS 266 (412)
T ss_pred ceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchhHHhcccCCCC---CEE--Eechhcc
Confidence 4578999999999998654 9999999999999999999985 6 789888764 6778876 666 8999997
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH-HHcc
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI-IMGL 417 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~-l~~~ 417 (430)
..| |++++++++ +.+... .+..+.+.+|+.+++++++|++ ++++
T Consensus 267 ~~G~pigav~~~~~~-~~~~~~--~~~~T~~gnpl~~aaa~a~l~~~i~~~ 314 (412)
T TIGR02407 267 GYGLPLALTLIKPEL-DVWKPG--EHNGTFRGNNLAFVTATAALEYYWSDD 314 (412)
T ss_pred CCccceeEEEEchhh-hccCCC--ccCCCCCccHHHHHHHHHHHHHHhccc
Confidence 534 788888876 544322 2233556789999999999996 5444
No 100
>PLN00144 acetylornithine transaminase
Probab=99.61 E-value=8.2e-15 Score=150.73 Aligned_cols=121 Identities=24% Similarity=0.229 Sum_probs=94.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++.++.|.+.+ +++|+++|++||++||+||+|+ | +|++|.++. +++++.| || .||||+++
T Consensus 167 ~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t-g-~gr~g~~~~~~~~~~~P---Di--~t~sK~l~ 239 (382)
T PLN00144 167 KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC-G-LGRTGYLWAHEAYGVEP---DI--MTLAKPLA 239 (382)
T ss_pred CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchHhhhhhcCCCC---CE--EEeccccc
Confidence 4678999999888555543 9999999999999999999995 4 678887554 5778876 54 49999995
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|++++++++++.+....+ ..+.+.+|+.+++++++|+++++++-.+..++
T Consensus 240 ~G~pig~v~~~~~~~~~~~~~~~--~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~ 294 (382)
T PLN00144 240 GGLPIGAVLVTEKVASAINPGDH--GSTFAGGPLVCNAALAVLDKISKPGFLASVAK 294 (382)
T ss_pred CCcceEEEEEcHHHHhccCCCCC--CCCCCCCHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 566899999999998865333 34556899999999999999976654333333
No 101
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.60 E-value=1.7e-14 Score=151.92 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=94.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|+++|++||++||+||++ +| +|++|.+++ +++|+.| ||+ |++|++|
T Consensus 225 ~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~-tG-fGRtG~~~a~~~~gv~P---Div--t~gK~l~ 297 (459)
T PRK06931 225 KPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQ-AG-FARTGKMFAFEHAGIEP---DII--VMSKAVG 297 (459)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch-hc-CCcCchHHHhhhcCCCC---CEE--Eeccccc
Confidence 4689999999999888765 999999999999999999998 46 688888664 7889876 787 9999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.+-|.++++++ ++.+... .+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 298 gG~Pi~av~~~~~-~~~~~~~--~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~ 354 (459)
T PRK06931 298 GGLPLAVLGIKKE-FDAWQPG--GHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGE 354 (459)
T ss_pred CCcceeeeeeHHH-HhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 23355666665 4554322 2334556899999999999999988765555444443
No 102
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.59 E-value=3.4e-14 Score=148.90 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=92.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+...||+|++.+..|.+.| |++|+++|++||++||+||+++ | ||++|..++ +++++.| ||+ ++||++|
T Consensus 206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l~ 278 (442)
T TIGR00709 206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQA-G-FGRSGTMFAFEHAGIEP---DFV--VMSKAVG 278 (442)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCCchhHHHHcCCCC---cEE--EEccccc
Confidence 5688999999998887754 9999999999999999999984 5 678887654 6788875 788 6999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
. +-|+++++++ ++.+... .+..|.+.+|+.+++++++|+++++++-.+..+++
T Consensus 279 ~G~Pigav~~~~~-~~~~~~~--~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~ 333 (442)
T TIGR00709 279 GGLPLAVLLIAPE-FDAWQPA--GHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQER 333 (442)
T ss_pred CCcccEEEEEchH-HhccCCC--cCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4 2377778877 4443221 23345668999999999999999877654444443
No 103
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.58 E-value=3.7e-14 Score=147.66 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=95.3
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.+ +.+|+++|++||++||+||+|+ | +|.+|.+. .+..++.| | ++||||++
T Consensus 198 ~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g-~g~~g~~~~~~~~~~~p---d--i~s~sK~l 270 (425)
T PRK08088 198 EDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-G-AGRTGTLFAMEQMGVAA---D--LTTFAKSI 270 (425)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCcchhHHhhcCCCC---C--EEEEeccc
Confidence 35679999999999998887 9999999999999999999997 4 67776653 24555543 5 46999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+ ..-||+++++++++.+..... ..+.+.+|+.++++++.|+.+..++.....++.
T Consensus 271 ~~G~rig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 327 (425)
T PRK08088 271 AGGFPLAGVTGRAEVMDAIAPGGL--GGTYAGNPIACAAALAVLKVFEQENLLQKANAL 327 (425)
T ss_pred cCCCcceeeEecHHHHhhcCCCCC--CCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7 223789999999998876443 345567899999999999998766544444443
No 104
>KOG1402|consensus
Probab=99.58 E-value=8.7e-15 Score=144.07 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=146.2
Q ss_pred HHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeee-cCCCccCCCCCcHHHHHHHHHHHH
Q psy2206 183 FVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNL-ASYNYLGFGENTGLCTERSKESVK 261 (430)
Q Consensus 183 ~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf-~S~nYLGl~~~~~~v~~a~~~ai~ 261 (430)
.|.=|.-+-|..+. -....+.|+++++.+ | +++++| +.|.-..-++.+|.++++.++.++
T Consensus 29 ~E~k~~ahnyhpLp----vvf~ka~g~~vwD~e-------------G--k~ylDflsaysaVnqGhchpki~~aLqeq~~ 89 (427)
T KOG1402|consen 29 RENKYGAHNYHPLP----VVFSKAKGSRVWDPE-------------G--KEYLDFLSAYSAVNQGHCHPKIIKALQEQAD 89 (427)
T ss_pred hhhhcccccCCcCc----eEEEecCCcEEECCC-------------c--cchhhhhhhhhhcccCCCCHHHHHHHHHHHh
Confidence 34445556666663 334678999999876 7 889999 667777777777899999988776
Q ss_pred HhCCCCCC----------------------------CCC-----------------------------------------
Q psy2206 262 QSGCALCS----------------------------PSA----------------------------------------- 272 (430)
Q Consensus 262 ~yG~g~~~----------------------------sr~----------------------------------------- 272 (430)
+.-..+-+ ...
T Consensus 90 kLtlssrafYnd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais 169 (427)
T KOG1402|consen 90 KLTLSSRAFYNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAIS 169 (427)
T ss_pred HhhhhhHHHhhhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEE
Confidence 52111000 000
Q ss_pred --------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHH
Q psy2206 273 --------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLK 322 (430)
Q Consensus 273 --------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La 322 (430)
.++||..|+. .+.+.+++|+|....|.+.| |+++++||
T Consensus 170 ~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~------------~~vaaFivEPIQGEaGVvvP~~GYL~~vreLC 237 (427)
T KOG1402|consen 170 LSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS------------PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELC 237 (427)
T ss_pred ecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC------------CCeeEEEeeccccccceEeCCchhHHHHHHHH
Confidence 1555655554 25778999999999999987 99999999
Q ss_pred HhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHhcCCcccccCC
Q psy2206 323 NKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRANSHVRSYATS 398 (430)
Q Consensus 323 ~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~~~~~~~~s~s 398 (430)
++|++++|+||+++ | +|++|+-++ ++-.+.| ||+ -|+|+++. +-..++++.+++..++...++.. ..
T Consensus 238 tkynvl~I~DEvQT-G-l~RTGk~la~d~env~P---Div--ilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsT--yg 308 (427)
T KOG1402|consen 238 TKYNVLLIADEVQT-G-LARTGKLLACDYENVRP---DIV--ILGKALSGGVYPVSAVLADDDIMLNIKPGEHGST--YG 308 (427)
T ss_pred HhhcEEEEehhhhh-c-ccccCcEEEeehhhcCC---CeE--EEeccccCCeeeeEEEEecHHHHhccCCCccccc--cC
Confidence 99999999999994 6 689999876 6666655 777 78999961 22446788999988776655544 44
Q ss_pred CcHHHHHHHHHHHHHHHccCCc
Q psy2206 399 MPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 399 ~~P~~~aaalaaL~~l~~~~~~ 420 (430)
.+|..++++.++|+++.+++-.
T Consensus 309 gNpLg~~vaiAalevi~eekL~ 330 (427)
T KOG1402|consen 309 GNPLGCAVAIAALEVIVEEKLV 330 (427)
T ss_pred CChHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999888643
No 105
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.55 E-value=5.3e-14 Score=146.35 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=72.9
Q ss_pred eEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccccc
Q psy2206 297 KILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGG 374 (430)
Q Consensus 297 ~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG 374 (430)
+++|++ +++|+|. .|+++|.++|++||++|++|+||++|+++. |. ..+.. ..+|++++|++|++ |..||
T Consensus 169 ~klVi~~~~~~g~~---~dl~~l~~la~~~g~~livD~Aha~G~~~~---g~--~~~~~-~~~Di~~~s~~K~l~g~~GG 239 (416)
T PRK13034 169 PKLIIAGFSAYPRE---LDFARFREIADEVGALLMVDMAHIAGLVAA---GE--HPNPF-PHAHVVTTTTHKTLRGPRGG 239 (416)
T ss_pred CeEEEECCCccccc---cCHHHHHHHHHHcCCEEEEeCcccccCccc---CC--CCCCC-CCceEEEEeCcccCCCCCCe
Confidence 446666 5777655 478888889999999999999999998763 32 12211 35799999999999 57789
Q ss_pred eeecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 375 YVAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 375 ~v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+++++.+.+ +.++....+.+.+.+.+|..++++++.++++
T Consensus 240 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~ 280 (416)
T PRK13034 240 MILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEAL 280 (416)
T ss_pred EEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHh
Confidence 988866554 4444322111223355666655555555555
No 106
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.54 E-value=3.3e-14 Score=149.54 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
.+++++++.+. ++ .|++-+..+. +.+.|+++|+++|++||++|+||+||++|++| |.+..+.++
T Consensus 209 ~d~l~~~~~~~------------~p-lvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Glig--g~~~~~~~~ 272 (493)
T PRK13580 209 YDEIAALAREF------------KP-LILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVA--GKVFTGDED 272 (493)
T ss_pred HHHHHHHHhhc------------CC-EEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceec--cccchhhcC
Confidence 68888887652 23 3444466555 55789999999999999999999999999997 333333332
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.. ..+||+++|++|++ |..||+|++++++++++.. +.+++++++++|..++++.+ +..++++
T Consensus 273 ~~-~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~-a~P~i~gg~l~p~iAA~avA-l~e~~~~ 335 (493)
T PRK13580 273 PV-PHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDK-GCPLVLGGPLPHVMAAKAVA-LAEARTP 335 (493)
T ss_pred CC-CCCcEEEeCChhhccCCCeEEEEecHHHHHHHhh-CCCcccCCCccHHHHHHHHH-HHHHhCc
Confidence 22 36899999999999 7889999999999999964 56899999999977776665 5555443
No 107
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.54 E-value=2.7e-13 Score=142.36 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=91.4
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|..+ .+++++.| ||+ ||||++
T Consensus 218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~t-g-~gr~g~~~a~~~~~v~p---Di~--t~sK~l 290 (451)
T PRK06918 218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQT-G-FARTGKYFAIEHFDVVP---DLI--TVSKSL 290 (451)
T ss_pred CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-cCccCceehhHhcCCCC---CEE--eeehhh
Confidence 35788999999988887655 9999999999999999999985 4 45666543 35667654 655 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+ .+-|++++++++++.+....+ ..+...+|+.+++++++|+++++++-.+..
T Consensus 291 ~~G~pig~v~~~~~i~~~~~~~~~--~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~ 344 (451)
T PRK06918 291 GAGVPISGVIGRKEIMDESAPGEL--GGTYAGSPLGCAAALAVLDIIEKENLNDRA 344 (451)
T ss_pred cCCCccEEEEEcHHHHhccCCCCc--CcCCCcCHHHHHHHHHHHHHHHHCCHHHHH
Confidence 7 223889999999988764332 345568999999999999999766443333
No 108
>KOG1404|consensus
Probab=99.51 E-value=9.6e-14 Score=139.45 Aligned_cols=118 Identities=22% Similarity=0.242 Sum_probs=100.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
...+.+|.|+|.+..|.+.+ |+++.++|+++|.++|.||+++ | ||++|.-+ +|++++.| ||+ |++|++
T Consensus 211 ~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqt-G-fGRtG~~wgfe~h~v~P---DIv--TmAKgi 283 (442)
T KOG1404|consen 211 ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQT-G-FGRTGHMWGFESHGVVP---DIV--TMAKGI 283 (442)
T ss_pred CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhh-c-cccccccccccccCCCc---cHH--HHHhhc
Confidence 35788999999999998876 9999999999999999999985 5 79998654 47888876 788 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCc
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~ 420 (430)
| .+-|+|+.++++.+.+..... +.+|.+.+|+.+++++++|++++++.-.
T Consensus 284 GnG~Pl~AVvtt~EIa~v~~~~~~-~fnTyggnP~a~avg~aVL~Vikee~Lq 335 (442)
T KOG1404|consen 284 GNGFPLGAVVTTPEIADVLNQKSS-HFNTYGGNPVACAVGLAVLKVIKEENLQ 335 (442)
T ss_pred cCCCcceeeecCHHHHHHHHhccc-cccccCCCchhHHHHHHHHHHHHHHhHH
Confidence 6 455788899999999988653 5678889999999999999999887543
No 109
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.48 E-value=1.3e-13 Score=145.12 Aligned_cols=133 Identities=22% Similarity=0.246 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-c
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-T 348 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~ 348 (430)
++|+++|++. +.+.+.||+|+|+++.|.+.| |++|+++|++||++||+||+| +| +|++|.++ .
T Consensus 239 ~~l~~~l~~~----------~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tG-fGrtG~~fa~ 306 (464)
T TIGR00699 239 EEVEDLIKKW----------HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQ-TG-VGATGKFWAH 306 (464)
T ss_pred HHHHHHHHhc----------CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeee-eC-CCCCcchhHH
Confidence 4566666542 235789999999999999988 999999999999999999999 77 58988875 4
Q ss_pred eecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCC-cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSH-VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~-~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+++|+. .+.||+ ||+|++|. ||++++.+ . +..... .+..|...+|+.+++++++|+++++++-.+..+++
T Consensus 307 e~~gv~-~~PDi~--t~gK~lg~-gG~~~~~~-~---~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~ 377 (464)
T TIGR00699 307 EHWNLD-DPPDMV--TFSKKFQT-AGYFFHDP-A---FRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHV 377 (464)
T ss_pred HhcCCC-CCCCEE--Eehhhhcc-CCccccch-h---ccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888986 234886 99999952 46554443 2 221111 12235567999999999999999877654444433
No 110
>KOG1401|consensus
Probab=99.48 E-value=4.3e-13 Score=135.56 Aligned_cols=122 Identities=25% Similarity=0.290 Sum_probs=97.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
....||+|++....|.+.. |..|+.+|+++|++||.||++ +| ||+.|.+++ +++++.| ||. |++|.+|
T Consensus 206 ~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~-tG-~gR~g~~~a~e~~~~~P---DI~--t~aK~L~ 278 (433)
T KOG1401|consen 206 EIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ-TG-LGRLGYGWAQEYFGVTP---DIT--TVAKPLG 278 (433)
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh-hC-ccccchHHHHHHhCcCC---cce--eehhhcc
Confidence 4678999999988777654 999999999999999999998 56 688888776 7899887 777 9999995
Q ss_pred --cccceeecCHHHHHHHHhcCC-cccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSH-VRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~-~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
++-|+..++.++++.+....+ .+-.|.+.+|+.|.++..+|+.+.+........
T Consensus 279 gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs 335 (433)
T KOG1401|consen 279 GGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVS 335 (433)
T ss_pred CCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHH
Confidence 555788899999999887544 112355679999999999999998775544433
No 111
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.47 E-value=2e-13 Score=143.14 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=92.9
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|+++.|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ +|+|++
T Consensus 224 ~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l 296 (443)
T PRK08297 224 HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQT-G-VGLTGTAWAYQQLGVRP---DIV--AFGKKT 296 (443)
T ss_pred CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCccchHHHHHhcCCCC---CEE--Eecccc
Confidence 46889999999999998854 9999999999999999999995 6 688888764 7788876 787 899998
Q ss_pred ccccceeecCHHHHHHHHh-c--CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 GSMGGYVAGSKSTIDYIRA-N--SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G~~GG~v~gs~~li~~l~~-~--~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .||++.++ ++.+.... . ...+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 297 ~-~~a~l~~~-~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g 355 (443)
T PRK08297 297 Q-VCGIMAGR-RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQG 355 (443)
T ss_pred c-ccceecch-HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6 46666654 33322211 1 11123455689999999999999998776554444443
No 112
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.44 E-value=3.9e-13 Score=135.51 Aligned_cols=95 Identities=26% Similarity=0.364 Sum_probs=71.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHH---HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRL---KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~L---a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+.+|+++++++|+|.+.+.+++.++ |++|+++||+||+|+..+++..+.... ...+......|+++||||+||++|
T Consensus 149 ~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~g~~G 227 (363)
T PF00155_consen 149 PKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPI-RSLLDEDDNVIVVGSLSKSFGLPG 227 (363)
T ss_dssp EEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHH-HGHHTTTSTEEEEEESTTTTTSGG
T ss_pred cceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcc-cccccccccceeeeeccccccccc
Confidence 5688899999999999885555555 999999999999999887775432211 111221122699999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCc
Q psy2206 374 ---GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~ 392 (430)
||+++++++++.++.....
T Consensus 228 lRvG~i~~~~~~~~~l~~~~~~ 249 (363)
T PF00155_consen 228 LRVGYIVAPPELIERLRRFQRS 249 (363)
T ss_dssp GTEEEEEEEHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhcccc
Confidence 9999999999999875543
No 113
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.43 E-value=6.7e-13 Score=138.75 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=92.5
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+...||+|+|.++.|.+.| |++|+++|++||++||+||+++ | +|++|.++ .+++++.| ||+ +++|++
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GrtG~~~a~~~~gv~P---Di~--~~gK~~ 289 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQT-G-VGLTGTAWAYQQLGVQP---DIV--AFGKKT 289 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-c-cCccchHHHHHhcCCCC---CEE--EecccC
Confidence 46889999999999998764 9999999999999999999996 6 58888775 47888876 787 899997
Q ss_pred ccccceeecCH--HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 GSMGGYVAGSK--STIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G~~GG~v~gs~--~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
..||++.+.+ ++.+.+......+..|.+.+|+.+++++++|+++++++-.+..+++.+
T Consensus 290 -~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~ 349 (431)
T TIGR03251 290 -QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGA 349 (431)
T ss_pred -ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4567776543 222211110111223445789999999999999987765445555444
No 114
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.35 E-value=6.1e-12 Score=140.18 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+.+++.|++.... ..+.+.+.||+|+| .+..|.+.| +++|+++|++||++||+||+. +| ||++|+.++
T Consensus 567 ~~le~~l~~~~~~-----~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~-TG-fGRtG~~fa 639 (817)
T PLN02974 567 SYIEQQLDEYEAS-----AKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVF-TG-LWRLGVESA 639 (817)
T ss_pred HHHHHHHHhhccc-----cCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecc-cC-CCcccchhh
Confidence 5577776542100 01246889999996 787787765 999999999999999999998 56 799998764
Q ss_pred -eecCCCCCCccEEEeCccchhc---cccceeecCHHHHHHHHhc----CCcccccCCCcHHHHHHHHHHHHHHHccCCc
Q psy2206 349 -EYFGIDPREVDILMGTYTKSFG---SMGGYVAGSKSTIDYIRAN----SHVRSYATSMPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~G---~~GG~v~gs~~li~~l~~~----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~ 420 (430)
+++|+.| ||+ +++|+++ .+-|.+++++++.+.+... ...+.+|.+.+|+.||+++++|+++++++-.
T Consensus 640 ~e~~gv~P---DIi--~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~ 714 (817)
T PLN02974 640 WELLGCKP---DIA--CYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTN 714 (817)
T ss_pred HHhcCCCC---CEE--eecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH
Confidence 7889876 788 9999995 2446678899999988521 1123456778999999999999999887533
No 115
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.34 E-value=3.5e-12 Score=131.20 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=90.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----S 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~ 371 (430)
++++|++|++.|++|.+.|+++|+++|++||+++|+||+|+.|++.. ++. ..+||+++|++|.+| .
T Consensus 135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~---------pl~-~gaDivv~S~tK~l~G~~d~ 204 (377)
T TIGR01324 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK---------PLE-HGVDISIQAGTKYLVGHSDI 204 (377)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---------ccc-cCceEEEecCceeccCCCCc
Confidence 46799999999999999999999999999999999999999887542 122 356999999999997 4
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++++++.++.++.. ...++..++|..++.++.+++.+
T Consensus 205 ~gG~v~~~~~~~~~l~~~--~~~~G~~l~p~~a~~~~rgl~tl 245 (377)
T TIGR01324 205 MIGTVVANARTWDQLREH--SYLMGQMVDADDAYTTLRGLRTL 245 (377)
T ss_pred eEEEEEeCHHHHHHHHHH--HHHhCCCCCHHHHHHHHhhhhhH
Confidence 579999999888877743 34568889999999998888776
No 116
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.33 E-value=2.2e-12 Score=131.94 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=85.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|+++||+|.+.|+++|+++|++||++|++||+|+.+++.. .+. ..+||++.|++|.+|.
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~---------~~~-~g~Divv~S~tK~l~g~~~~ 194 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQR---------PLE-LGADIVVHSATKYIGGHSDV 194 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCC---------hhh-hCCcEEEeccceeccCCCCc
Confidence 35689999999999999999999999999999999999998775421 111 2468999999999973
Q ss_pred ccceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++++ ++++.++..... +++.++|..+++++.+|+.+
T Consensus 195 ~gG~v~~~~~~l~~~l~~~~~~--~g~~~~p~~a~~~l~~l~tl 236 (369)
T cd00614 195 IAGVVVGSGEALIQRLRFLRLA--LGTILSPFDAWLLLRGLKTL 236 (369)
T ss_pred eEEEEEeCcHHHHHHHHHHHHh--hCCCCCHHHHHHHHcCCCCH
Confidence 479999987 888888865432 56678899888877766543
No 117
>KOG0257|consensus
Probab=99.32 E-value=3.8e-12 Score=129.22 Aligned_cols=119 Identities=19% Similarity=0.280 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~ 348 (430)
+++||.++.+ ++++||+.++.+++|.+.+ |++|++||++||+++|.||+|...++.+. ..-++
T Consensus 162 ~~~le~~~t~-------------kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~a 228 (420)
T KOG0257|consen 162 PEELESKITE-------------KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIA 228 (420)
T ss_pred hHHHHhhccC-------------CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeee
Confidence 7889888765 5789999999999999998 99999999999999999999998887543 22334
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQI 407 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaa 407 (430)
...|+ .++.|.++|+||+||++| ||+++++.++..+...+...+|++ .+|.+.|.+
T Consensus 229 slPgm--~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~-~Tp~q~A~a 287 (420)
T KOG0257|consen 229 SLPGM--YERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTC-PTPIQEASA 287 (420)
T ss_pred cCCch--hheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhhcccccc-CcHHHHHHH
Confidence 34555 477899999999999999 999999999999988766666654 445554433
No 118
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.31 E-value=5.5e-12 Score=130.27 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=88.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|++.||+|.+.|+++|+++|++||+++|+||+|+.++++. . +. ...||++.|++|.+|+.
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~---~------~~-~g~Divv~S~sK~lgg~g~~ 213 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTN---P------VA-LGVDVVVHSATKYIGGHGDV 213 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCC---c------hh-cCCCEEEccccccccCCCCc
Confidence 46789999999999999999999999999999999999998776532 1 11 24589999999999854
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++++++++.++.......++..++|..++.++..|+.+
T Consensus 214 ~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl 256 (391)
T TIGR01328 214 VAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL 256 (391)
T ss_pred eEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH
Confidence 589999999999888644333446678999998888877554
No 119
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.30 E-value=7e-12 Score=129.84 Aligned_cols=119 Identities=13% Similarity=0.238 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++++.+ ++++|++|++.||+|.+.|+++|.++|++| |++||+||+|+.++++. .
T Consensus 139 ~e~l~~~i~~-------------~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~---~---- 198 (400)
T PRK06234 139 LEEVRNALKA-------------NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQR---P---- 198 (400)
T ss_pred HHHHHHHhcc-------------CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCC---c----
Confidence 5666666643 356899999999999999999999999997 99999999998776531 1
Q ss_pred cCCCCCCccEEEeCccchhccc----cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. ..+||++.|+||.+++. ||++++++++++.++.......++..++|..++.++..|+.+
T Consensus 199 --l~-~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl 263 (400)
T PRK06234 199 --LQ-LGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL 263 (400)
T ss_pred --hh-hCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH
Confidence 11 24689999999999864 499999999999887644333457789999999888877644
No 120
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.28 E-value=1.8e-11 Score=125.91 Aligned_cols=128 Identities=13% Similarity=0.242 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.|++.... + ..++++|+++++++++|.+.|+++|.++|++||+++++|+||+.|.++-.+. .+
T Consensus 141 ~~~l~~~l~~~~~~-----~-~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~----~~- 209 (387)
T PRK09331 141 PEAYAEKIEEVKEE-----T-GKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGK----KL- 209 (387)
T ss_pred HHHHHHHHHHhhhc-----c-CCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHH----Hc-
Confidence 78888888652100 0 0145688899999999999999999999999999999999999876543221 12
Q ss_pred CCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhcCCccc------ccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRANSHVRS------YATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~~~~~~------~s~s~~P~~~aaalaaL~~l~ 415 (430)
++|++++|++|++++++ |++++++++++.++....++. +++++++..+++++++++.+.
T Consensus 210 ----g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~ 276 (387)
T PRK09331 210 ----GADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVV 276 (387)
T ss_pred ----CCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHH
Confidence 45899999999997654 899999999998876544332 333444444444555665543
No 121
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.28 E-value=1.2e-11 Score=127.93 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=87.0
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|++.++.|++|.+.+ |++|+++|++||++||.||+|.--+++.. ...+++..+. .+..|.++||||++++
T Consensus 163 ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~--~~~~i~i~s~SK~~~m 240 (393)
T COG0436 163 KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGA--RDRTITINSFSKTYGM 240 (393)
T ss_pred cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCC--cceEEEEecccccccc
Confidence 5779999999999999997 99999999999999999999998777542 3333433332 3568999999999999
Q ss_pred cc---ceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 372 ~G---G~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
+| ||++++ +++++.+.... .++.+++..+.+.+ +.++|+
T Consensus 241 tGwRvG~~v~~~~~l~~~~~~~~-~~~~~~~~~~~Q~a-a~~aL~ 283 (393)
T COG0436 241 TGWRIGWVVGPPEELIAALRKLK-SYLTSCAPTPAQYA-AIAALN 283 (393)
T ss_pred cccceeEeecChHHHHHHHHHHH-HhcccCCCHHHHHH-HHHHhc
Confidence 99 999999 88998887433 34445555555554 555555
No 122
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.28 E-value=3.2e-11 Score=121.90 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=76.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.|++++.++|+++|+++|+||+|... .+.....+... .+..|+++||||++|++|
T Consensus 159 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~-~~~~~~~~~~~-----~~~vi~~~S~SK~~g~~GlRi 232 (361)
T PRK00950 159 TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEF-AEYDYTPLALE-----YDNLIIGRTFSKVFGLAGLRI 232 (361)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhh-CccchHHHHHh-----cCCEEEEEeehHhhcCchhhc
Confidence 456677799999999999999999999999999999999632 22211111111 123588999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++.....+ + .+++..+++.+++
T Consensus 233 G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~a~~~l 266 (361)
T PRK00950 233 GYGFVPEWLIDYYMRAKTPF--S--LTRLSQAAAIAAL 266 (361)
T ss_pred chhcCCHHHHHHHHHhcCCC--C--CCHHHHHHHHHHh
Confidence 99999999999888755432 2 3444444445554
No 123
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.26 E-value=5.2e-11 Score=120.79 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=78.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|++..+.+++|.+.++++|.++++.+ ++++|+||+|....++..........+. .+..|+++||||+||++|
T Consensus 154 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~G 231 (367)
T PRK02731 154 RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAK--FPNVVVTRTFSKAYGLAG 231 (367)
T ss_pred CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhh--cCCEEEEeeehHhhcCcc
Confidence 345777889999999999999999999875 8999999999866553211111222222 234789999999999988
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+......+ . .+++..+++.+.|
T Consensus 232 ~RiG~l~~~~~~~~~l~~~~~~~--~--~~~~~~~~a~~~l 268 (367)
T PRK02731 232 LRVGYGIAPPEIIDALNRVRQPF--N--VNSLALAAAVAAL 268 (367)
T ss_pred cceeeeeCCHHHHHHHHHccCCC--C--CCHHHHHHHHHHh
Confidence 99999999999988754332 2 2344444444444
No 124
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.24 E-value=9.2e-12 Score=128.06 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhcccC---CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHH
Q psy2206 47 VLFYSRYVYRRIVDCFN---RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123 (430)
Q Consensus 47 e~~~~r~l~~r~~d~~~---rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al 123 (430)
..++.+.+..+-.+++. +.+.+.++..+.+.+ ++++||+|||||||+ +||.+++++++++
T Consensus 4 ~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~----------------~~~~nf~SNdYLGLa-~~~~~~~a~~~~~ 66 (388)
T COG0156 4 LSFLRQALQALKAEGLYRGLRALDRRQGLAIRADG----------------RKVLNFCSNDYLGLA-SHPELIEAAKAAI 66 (388)
T ss_pred HHHHHHHHHHHHhhccccchhhccccCCcceecCC----------------ceeEeeeccCccccc-CCHHHHHHHHHHH
Confidence 33444444333333333 445566666665543 489999999999999 6999999999999
Q ss_pred hhhCCccccCCcccccc
Q psy2206 124 KQSGCALCSPSGEIASM 140 (430)
Q Consensus 124 ~~yG~gs~~sr~~~g~~ 140 (430)
++||+|+||||++.||+
T Consensus 67 ~~~g~g~~gsR~i~G~~ 83 (388)
T COG0156 67 RRYGVGAGGSRLISGTS 83 (388)
T ss_pred HHhCCCCCCcCcccCCc
Confidence 99999999999999998
No 125
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.23 E-value=5.1e-11 Score=120.92 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=69.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc--c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--G 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--G 373 (430)
++++|++..+.+++|.+.|+++|.++|++||++|++||||+.|.+.-.+ .. .++|+++.|++|+++++ +
T Consensus 139 ~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~----~~-----~~~d~~~~s~~K~l~~~~~~ 209 (361)
T cd06452 139 PPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSG----KE-----LGADFIVGSGHKSMAASAPI 209 (361)
T ss_pred CceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCH----HH-----cCCCEEEecCCccccCCCCe
Confidence 3567888899999999999999999999999999999999866432111 11 13589999999999754 3
Q ss_pred ceeecCHHHHHHHHhcC
Q psy2206 374 GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.++...
T Consensus 210 G~l~~~~~~~~~l~~~~ 226 (361)
T cd06452 210 GVLATTEEWADIVFRTS 226 (361)
T ss_pred EEEEECHHHHHHHhccc
Confidence 89999999999887643
No 126
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.23 E-value=6.5e-11 Score=119.85 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=78.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|+++.+.+++|.+.+.++|.++++. +|+++|+||+|....++..........+. .+.+|+++||||+||++|
T Consensus 151 ~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~G 228 (359)
T PRK03158 151 QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEK--YENLIVLRTFSKAYGLAA 228 (359)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHh--cCCEEEEEechHhhcCcc
Confidence 34567778999999999999999999877 59999999999765543211111111111 234799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+...... + ..+++..+++.++|
T Consensus 229 lRiG~~v~~~~~~~~~~~~~~~--~--~~~~~~q~~~~~~l 265 (359)
T PRK03158 229 LRVGYGIASEELIEKLNIARPP--F--NTTRIAQYAAIAAL 265 (359)
T ss_pred hhhehhcCCHHHHHHHHHhcCC--C--CCCHHHHHHHHHHh
Confidence 9999999999988875432 2 24555555555555
No 127
>PLN02242 methionine gamma-lyase
Probab=99.23 E-value=2e-11 Score=127.23 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=81.0
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc----
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM---- 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~---- 372 (430)
+++|++|++.||+|.+.++++|+++|++||++||+||+|+.+.+.+ . .+ ..||+++||||++++.
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~-----~-~~-----g~divv~S~SK~l~g~g~~~ 232 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSP-----A-RL-----GADVVVHSISKFISGGADII 232 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCH-----H-Hc-----CCcEEEEeCccccCCCCCce
Confidence 6789999999999999999999999999999999999997543321 1 11 3589999999999754
Q ss_pred cceeecCHHHHHHHHhcCCc--ccccCCCcHHHHHHHHHHHH
Q psy2206 373 GGYVAGSKSTIDYIRANSHV--RSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 GG~v~gs~~li~~l~~~~~~--~~~s~s~~P~~~aaalaaL~ 412 (430)
|||+++++++++.++..... ...+..++|..++.++..++
T Consensus 233 gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~ 274 (418)
T PLN02242 233 AGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP 274 (418)
T ss_pred EEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC
Confidence 69999999999988865432 23455566777766555433
No 128
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.22 E-value=2.1e-11 Score=125.78 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ .++++|++|++.||+|.+.|+++|+++|++||++||+||+|+.++... +
T Consensus 126 ~~~l~~~i~~------------~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---~------ 184 (385)
T PRK08574 126 TEDIIEAIKE------------GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYR---P------ 184 (385)
T ss_pred HHHHHHhcCc------------cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC---h------
Confidence 5667666543 135688899999999999999999999999999999999998775421 1
Q ss_pred CCCCCccEEEeCccchhcc----ccc-eeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS----MGG-YVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~----~GG-~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. .++||++.|++|.++. .|| ++++++++++.++.... .++..++|..++.++..|+.+
T Consensus 185 l~-~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~--~~g~~~~p~~a~l~l~~l~tL 248 (385)
T PRK08574 185 LR-HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR--RLGTIMQPFEAYLVLRGLKTL 248 (385)
T ss_pred hh-hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHcccCcH
Confidence 11 2468999999999974 467 56668888887775432 257778999888888877766
No 129
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.22 E-value=3.8e-11 Score=122.93 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|+++.+.+++|.+.|+++|.++|++||+++++||+|..|. +. ..
T Consensus 146 ~~~l~~~i~~-------------~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~------~~---~~ 203 (397)
T TIGR01976 146 PDDLASLLSP-------------RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH------GL---ID 203 (397)
T ss_pred HHHHHHhcCC-------------CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc------cC---CC
Confidence 5666666542 35789999999999999999999999999999999999996442 11 11
Q ss_pred CCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccc--------cCCCcHHHHHHHHHHHHHHHcc
Q psy2206 353 IDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY--------ATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~--------s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+....+|+++.|++|.+|...|++++++++++.+......+.+ +++.+...+++..++++.+.+.
T Consensus 204 ~~~~~~d~~~~s~~K~~g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 276 (397)
T TIGR01976 204 VQATGADFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGL 276 (397)
T ss_pred HHHcCCCEEEEechhhcCCceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 2212468999999999998789999999998877653322222 2234555666677888888654
No 130
>PRK06460 hypothetical protein; Provisional
Probab=99.21 E-value=5.3e-11 Score=122.33 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=83.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.||+|.+.|+++|+++|++||+++|+||+|+.++.. . .+. ...||++.|+||+++.
T Consensus 130 ~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~---~------~l~-~~~divv~S~sK~l~G~~~~ 199 (376)
T PRK06460 130 RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQ---K------PLE-LGADIVVHSASKFLAGHNDV 199 (376)
T ss_pred CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccC---C------hhh-cCCCEEEeecceeccCCCCc
Confidence 4568999999999999999999999999999999999999754311 1 111 2458999999999963
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+|++++++++++.++..... ++.+++|..++.++..++.+
T Consensus 200 ~~G~~~~~~~l~~~l~~~~~~--~g~~~~~~~a~~~l~~~~~l 240 (376)
T PRK06460 200 IAGLAAGYGKLLNVIDQMRRT--LGTSLDPHAAYLTLRGIKTL 240 (376)
T ss_pred eEEEEecCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhchhhH
Confidence 479999999999988764433 45557777777776666555
No 131
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.20 E-value=3.9e-11 Score=123.64 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=84.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|++.||+|.+.|+++|.++|+++|++|++||+|+.+.++. . +. ..+|+++.|+||.++..
T Consensus 146 ~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~---p------l~-~g~Div~~S~sK~l~g~g~~ 215 (386)
T PRK06767 146 NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQR---P------LE-LGCDAVVHSATKYIGGHGDV 215 (386)
T ss_pred CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCC---c------hh-cCCcEEEecCcceecCCCCc
Confidence 46789999999999999999999999999999999999998665431 1 11 24589999999999765
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||+++++++.++.+....+. .+.+.++|..+++++.+|+.+
T Consensus 216 ~gG~v~~~~~~i~~~~~~~~~-~~g~~~~~~~a~l~~~~L~tl 257 (386)
T PRK06767 216 VAGVTICKTRALAEKIRPMRK-DIGGIMAPFDAWLLLRGLKTL 257 (386)
T ss_pred eeEEEEeChHHHHHHHHHHHH-HhCCCCCHHHHHHHHcCCCcH
Confidence 69999999988776543322 234567888888777776644
No 132
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.20 E-value=5.1e-11 Score=123.61 Aligned_cols=134 Identities=18% Similarity=0.272 Sum_probs=98.6
Q ss_pred HHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccc
Q psy2206 258 ESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335 (430)
Q Consensus 258 ~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh 335 (430)
..+..+|...... ..+++|++++++ ++++|++|++.+++|.+.|+++|+++|++||++||+|++|
T Consensus 123 ~~~~~~G~~v~~vd~~d~~~l~~~i~~-------------~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~ 189 (403)
T PRK07503 123 HGLGEFGVTVRHVDLTDPAALKAAISD-------------KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTY 189 (403)
T ss_pred HHHhhCCEEEEEeCCCCHHHHHHhcCc-------------cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 3455566432111 125666666543 3568888999999999999999999999999999999999
Q ss_pred cccccCCCCCccceecCCCCCCccEEEeCccchhccc----cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 336 ~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
+.+..+. - .+ ...||++.|++|.+|.. ||++++++++++.++........+..++|..++.++..|
T Consensus 190 a~~~~~~---~----l~---~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L 259 (403)
T PRK07503 190 CTPYLQR---P----LE---LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGL 259 (403)
T ss_pred cccccCC---c----hh---hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCc
Confidence 8764321 1 11 24589999999999864 589999999998887432222346778999999888888
Q ss_pred HHH
Q psy2206 412 RII 414 (430)
Q Consensus 412 ~~l 414 (430)
+.+
T Consensus 260 ~tl 262 (403)
T PRK07503 260 KTL 262 (403)
T ss_pred chH
Confidence 766
No 133
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.19 E-value=5.5e-11 Score=123.19 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=86.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|.+.+++|.+.|+++|+++|++||++||+||+|+.++... .+. ..+|+++.|+||.+|.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---------~l~-~~~Divv~S~sK~l~g~~~~ 218 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN---------PLA-LGADLVIHSATKFLSGHADA 218 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC---------chh-hCCCEEeccCceecCCCCCc
Confidence 45689999999999999999999999999999999999998664321 111 2468999999999974
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++++++++.++.... ..+..++|..++.+++.++.+
T Consensus 219 ~gG~vv~~~~l~~~l~~~~~--~~g~~~s~~~a~l~l~~l~tL 259 (398)
T PRK08249 219 LGGVVCGSKELMEQVYHYRE--INGATMDPMSAYLILRGMKTL 259 (398)
T ss_pred eEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhCcchH
Confidence 57999999999988876432 246678999999888887776
No 134
>PLN00175 aminotransferase family protein; Provisional
Probab=99.18 E-value=1.1e-10 Score=121.20 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=80.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|....++.....+.+..+. .+..|+++||||+||++|
T Consensus 188 ~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~--~~~vi~i~SfSK~~~~~G 265 (413)
T PLN00175 188 TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM--YERTVTMNSLGKTFSLTG 265 (413)
T ss_pred ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC--cCcEEEEecchhhccCcc
Confidence 457778899999999886 888999999999999999999877665332333333232 245799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++.......+ +.+++...++.++|
T Consensus 266 ~RiG~~v~~~~l~~~l~~~~~~~~~--~~s~~~Q~a~~~~l 304 (413)
T PLN00175 266 WKIGWAIAPPHLTWGVRQAHSFLTF--ATATPMQWAAVAAL 304 (413)
T ss_pred hheeeeEeCHHHHHHHHHHHhhccC--CCCHHHHHHHHHHH
Confidence 9999999999988764422222 23333444444555
No 135
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.17 E-value=1.1e-10 Score=118.92 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~ 351 (430)
+++|++++++. +..+|+++++++|+|.+.+++++.+|++.++++||+||+|+. ++..|. ......
T Consensus 149 ~~~l~~~~~~~------------~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~--~~~~~~~~~~~~~ 214 (368)
T PRK03317 149 VDAAVAAIAEH------------RPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAE--FRRSGTPSALTLL 214 (368)
T ss_pred HHHHHHHHhcc------------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchh--hcccCCcCHHHHH
Confidence 56777776541 233566678999999999999999999999999999999974 332332 222222
Q ss_pred CCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+.. ...|+++||||+||++| ||+++++++++.++....+ + ..+++.++++.++|+.
T Consensus 215 ~~~--~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~~--~--~~s~~~~~a~~~~l~~ 273 (368)
T PRK03317 215 PEY--PRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRLP--Y--HLSAVTQAAARAALRH 273 (368)
T ss_pred HhC--CCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCCC--C--CCCHHHHHHHHHHhhC
Confidence 222 23688999999999999 9999999999999875432 2 3456666666666653
No 136
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.17 E-value=6.5e-11 Score=121.78 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+.++|....-.. .+++|++.+++ ++++|++|++.++.|.+.|+++|.++|+++|++||+||
T Consensus 110 ~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-------------~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~ 176 (380)
T TIGR01325 110 ISEILPRFGIEVSFVDPTDLNAWEAAVKP-------------NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDN 176 (380)
T ss_pred HHHHHHHhCCEEEEECCCCHHHHHHhcCC-------------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEEC
Confidence 3445666776432211 14555554432 46789999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILT 409 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaala 409 (430)
+|+.+++.. ++. ...||++.|++|.++. .||++++++++++.++..... ++..++|..++.++.
T Consensus 177 a~~~~~~~~---------pl~-~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~--~g~~~~p~~a~~~l~ 244 (380)
T TIGR01325 177 VFATPVLQQ---------PLK-LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRH--TGPAMSPFNAWVLLK 244 (380)
T ss_pred CCcccccCC---------chh-hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHh--hCCCCCHHHHHHHHh
Confidence 997654321 111 2458999999999974 469999999998887764332 456678888888887
Q ss_pred HHHHHH
Q psy2206 410 SMRIIM 415 (430)
Q Consensus 410 aL~~l~ 415 (430)
.++.+.
T Consensus 245 ~l~tl~ 250 (380)
T TIGR01325 245 GLETLS 250 (380)
T ss_pred ccCcHH
Confidence 776663
No 137
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.17 E-value=2.8e-10 Score=116.85 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=70.8
Q ss_pred EEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccccce
Q psy2206 298 ILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGY 375 (430)
Q Consensus 298 ~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~ 375 (430)
++|++ .+.+ |...|+++|.++|++||++|++||+|..|.++. |... ..+. .+|++++|+||+| |..||+
T Consensus 163 ~~v~~~~~~~---~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~---g~~~-~~~~--~~dv~~~s~sK~l~G~~gg~ 233 (402)
T cd00378 163 KLIVAGASAY---PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAG---GVFP-NPLP--GADVVTTTTHKTLRGPRGGL 233 (402)
T ss_pred CEEEecCccc---CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhc---ccCC-Cccc--CCcEEEeccccCCCCCCceE
Confidence 34444 5443 566799999999999999999999997776432 2111 1111 3589999999999 667899
Q ss_pred eecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 376 VAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 376 v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+++++ ++++.++....+..++++..+. .+++..++..+
T Consensus 234 i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~a~~~al~~~ 272 (402)
T cd00378 234 ILTRKGELAKKINSAVFPGLQGGPHLHV-IAAKAVALKEA 272 (402)
T ss_pred EEeccHHHHHHHHHHhCccccCCchHHH-HHHHHHHHHHH
Confidence 88876 8999887755444444433333 33333344433
No 138
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.17 E-value=9.4e-11 Score=121.09 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=97.0
Q ss_pred HHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
....+.+.++|....-.. .++++++++++ ++++|++|++.+++|.+.|+++|+++|++||++||+
T Consensus 115 ~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~-------------~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~liv 181 (390)
T PRK08133 115 SLFEKIFARFGIETTFVDLTDLDAWRAAVRP-------------NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVV 181 (390)
T ss_pred HHHHHHHHHcCcEEEEECCCCHHHHHHhcCc-------------CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 334455666775432221 25667666542 467899999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQI 407 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaa 407 (430)
||+|+.+++.. . +. ..+||++.|+||.++. .||++++++++++.+....+. .+..++|..++.+
T Consensus 182 D~t~~~~~~~~---p------l~-~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~--~g~~~~~~~a~~~ 249 (390)
T PRK08133 182 DNCFCTPALQQ---P------LK-LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRT--AGPTLSPFNAWVF 249 (390)
T ss_pred ECCCcccccCC---c------hh-hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHH--hCCCCCHHHHHHH
Confidence 99997665421 1 11 2358999999999975 469999998887766543222 3456788888777
Q ss_pred HHHHHHH
Q psy2206 408 LTSMRII 414 (430)
Q Consensus 408 laaL~~l 414 (430)
+..++.+
T Consensus 250 l~gl~tl 256 (390)
T PRK08133 250 LKGLETL 256 (390)
T ss_pred HcccchH
Confidence 7765544
No 139
>KOG1359|consensus
Probab=99.17 E-value=9.6e-12 Score=121.23 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc---
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM--- 140 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~--- 140 (430)
|.|.|.+|++|.+.++ .+++||||.||||||+ +||++++|+.+++++||.|-.|+|+++|+.
T Consensus 50 rVi~s~q~p~i~v~G~--------------~k~ilnFcaNnYLGLs-shPeii~a~~~aleeyGaGlssvrfIcGtq~iH 114 (417)
T KOG1359|consen 50 RVITSRQGPTIQVKGS--------------DKKILNFCANNYLGLS-SHPEIINAGQKALEEYGAGLSSVRFICGTQDIH 114 (417)
T ss_pred eEEeecccceEEEecc--------------ccceeeeccccccccc-CChHHHHHHHHHHHHhCCCccceeEEecchHHH
Confidence 7899999999998654 5799999999999999 899999999999999999999999999997
Q ss_pred ----------cccccceeeEEeccccccccccccc
Q psy2206 141 ----------LSKGASKSNILFQAHTNGFANGISK 165 (430)
Q Consensus 141 ----------l~~~~~~l~~~~~gh~~~~~~~~~~ 165 (430)
-++++++++..-+.-..+.+--+..
T Consensus 115 k~LE~kiAqfh~rED~ilypscfdANag~feail~ 149 (417)
T KOG1359|consen 115 KLLESKIAQFHGREDTILYPSCFDANAGAFEAILT 149 (417)
T ss_pred HHHHHHHHHHhCCCceEEeccccccchHHHHHhcC
Confidence 3777788776554443343433333
No 140
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.16 E-value=7.9e-11 Score=122.23 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=98.4
Q ss_pred HHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
....+.+.++|....-. ..+++|++++++ ++++|++|++.+++|.+.|+++|+++|+++|++||+
T Consensus 124 ~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~-------------~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~viv 190 (403)
T PRK07810 124 VVCNEILPRWGVETVFVDGEDLSQWEEALSV-------------PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVL 190 (403)
T ss_pred HHHHHHHHHcCcEEEEECCCCHHHHHHhcCc-------------CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence 33444555666532211 125667766643 366899999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHH-HHHhcCCcccccCCCcHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTID-YIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~-~l~~~~~~~~~s~s~~P~~~aa 406 (430)
||+|+.+++.. + +. ..+||++.|++|.++. .||+|+++++.+. .++...+ ..+..++|..++.
T Consensus 191 D~a~a~~~~~~---~------~~-~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~--~~g~~~s~~~a~l 258 (403)
T PRK07810 191 DNVFATPLLQR---G------LP-LGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPALSAFNAWV 258 (403)
T ss_pred ECCCCccccCC---h------hh-cCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH--HhCCCCCHHHHHH
Confidence 99998776431 1 11 2469999999999974 3699999887665 3432211 2355789999999
Q ss_pred HHHHHHHH
Q psy2206 407 ILTSMRII 414 (430)
Q Consensus 407 alaaL~~l 414 (430)
++++|+.+
T Consensus 259 ~l~~L~tl 266 (403)
T PRK07810 259 LLKGLETL 266 (403)
T ss_pred HHhccCcH
Confidence 98888776
No 141
>PRK09082 methionine aminotransferase; Validated
Probab=99.16 E-value=8.5e-11 Score=120.56 Aligned_cols=92 Identities=16% Similarity=0.250 Sum_probs=72.4
Q ss_pred eEEEEEcCccCCCCcc---cCHHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+ .++++|+++|++|++++|+||+|+..+++.. +..+....++ .+..|+++||||+||++
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~~~~ 241 (386)
T PRK09082 164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPEL--RERAFVVSSFGKTYHVT 241 (386)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCc--cCcEEEEeechhhccch
Confidence 4466777889999987 4589999999999999999999987766432 2233333232 24579999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.++...
T Consensus 242 G~RiG~iv~~~~l~~~~~~~~ 262 (386)
T PRK09082 242 GWKVGYCVAPAALSAEFRKVH 262 (386)
T ss_pred hhhhhhhhCCHHHHHHHHHHH
Confidence 9 99999999999888754
No 142
>PRK07682 hypothetical protein; Validated
Probab=99.14 E-value=1.5e-10 Score=118.17 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=79.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|+..++++....+....+. .+.+|+++||||+||++|
T Consensus 155 ~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G 232 (378)
T PRK07682 155 TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGM--RERTILISGFSKGFAMTG 232 (378)
T ss_pred cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccc--cCCEEEEecCcccccChh
Confidence 445666678999999876 899999999999999999999876665322222222222 245799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+..... +. ..+.+++..+++.++|
T Consensus 233 lR~G~~~~~~~~i~~l~~~~~-~~-~~~~~~~~q~a~~~~l 271 (378)
T PRK07682 233 WRLGFIAAPVYFSEAMLKIHQ-YS-MMCAPTMAQFAALEAL 271 (378)
T ss_pred hhhhhhhcCHHHHHHHHHHHH-hh-ccCCCHHHHHHHHHHH
Confidence 999999999998876432 21 1223444444445555
No 143
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.14 E-value=2.4e-10 Score=118.70 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=71.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++|+++||+||+|....++.....+.+..+. .+.+|+++||||++|++|
T Consensus 180 ~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~--~~~~I~i~SfSK~~g~~G 257 (410)
T PRK06290 180 AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGA--KEVGVEIHSLSKAYNMTG 257 (410)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCc--cccEEEEeechhhcCCch
Confidence 446666678999999998 788888899999999999999876554322222222111 245799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcC
Q psy2206 374 ---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 258 lRiG~ii~~~~l~~~l~~~~ 277 (410)
T PRK06290 258 WRLAFVVGNELIVKAFATVK 277 (410)
T ss_pred hheEeEEeCHHHHHHHHHHH
Confidence 99999999999888654
No 144
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.13 E-value=1.1e-10 Score=120.89 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=84.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.+++|.+.|+++|.++|+++|+++|+||+|+.+++.. . +. ..+||++.|++|.++.
T Consensus 150 ~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~---~------~~-~gaDivv~S~sK~l~g~g~~ 219 (398)
T PRK07504 150 NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQK---P------LE-LGAHIVVYSATKHIDGQGRC 219 (398)
T ss_pred CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCC---c------hh-hCCCEEEeeccccccCCccc
Confidence 46799999999999999999999999999999999999998775421 1 11 2358999999999975
Q ss_pred ccceeecCHHHHHH-HHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDY-IRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 372 ~GG~v~gs~~li~~-l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
.||+++++++.++. ++...+ ..+..++|..++.++.+|+.+.
T Consensus 220 ~GG~vv~~~~~i~~~~~~~~~--~~g~~~s~~~A~~~l~~L~tl~ 262 (398)
T PRK07504 220 LGGVVLSDKAWIEEHLQDYFR--HTGPSLSPFNAWTLLKGLETLP 262 (398)
T ss_pred eEEEEEeCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHhccchHH
Confidence 46889888887753 332111 2356789999999999888773
No 145
>PRK07324 transaminase; Validated
Probab=99.12 E-value=1.8e-10 Score=117.83 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=77.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+.-.++. . ....... .+..|+++||||+||++|
T Consensus 154 ~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~--~-~~s~~~~--~~~~I~~~s~SK~~~~~G 228 (373)
T PRK07324 154 TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG--S-TPSIADL--YEKGISTNSMSKTYSLPG 228 (373)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--C-CCChhhc--cCCEEEEecchhhcCCcc
Confidence 457888899999999998 9999999999999999999997544432 1 1111112 133689999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++..... . +.+.+++...++..+|
T Consensus 229 ~RiG~i~~~~~li~~~~~~~~~-~-~~~~~~~~q~~a~~~l 267 (373)
T PRK07324 229 IRVGWIAANEEVIDILRKYRDY-T-MICAGVFDDMLASLAL 267 (373)
T ss_pred ceeEEEecCHHHHHHHHHHhCc-E-EecCChHHHHHHHHHH
Confidence 9999999999998875432 2 1223334444444444
No 146
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.12 E-value=3.9e-10 Score=114.09 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
++++++++++ ++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...++........
T Consensus 126 ~~~l~~~~~~-------------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 192 (350)
T TIGR03537 126 LEKVEKSILE-------------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALE 192 (350)
T ss_pred HHHHHHhhhh-------------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhh
Confidence 5667776654 2345566678999999998 89999999999999999999986555432211111
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
.. .+..|+++||||++|++| ||+++++++++.++..... ++.+.++...+++.+++
T Consensus 193 ---~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l 251 (350)
T TIGR03537 193 ---VG-IENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRAN--FGVASPDFVQAAAKAAW 251 (350)
T ss_pred ---cC-cCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHh--hccCCCHHHHHHHHHHh
Confidence 12 234799999999999998 9999999999988874433 23334444334344443
No 147
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.12 E-value=6e-10 Score=111.99 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=76.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|++..+.+++|.+.|++++.++++.+ ++++|+||+|+. +...+.. ....... ..+|+++||||.+|++|
T Consensus 142 ~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~--~~~~~~~-~~~~~~~--~~~i~~~S~sK~~g~~G 216 (346)
T TIGR01141 142 KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGE--FSGEPST-LPLLAEY--PNLIVLRTLSKAFGLAG 216 (346)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh--hcCCccH-HHHHhhC--CCEEEEehhhHhhhchh
Confidence 456777789999999999999999999887 999999999973 2221111 1111111 23688999999999888
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.++..... + ..+++...++.++++
T Consensus 217 ~r~G~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~ 254 (346)
T TIGR01141 217 LRIGYAIANAEIIDALNKVRAP--F--NLSRLAQAAAIAALR 254 (346)
T ss_pred hhceeeecCHHHHHHHHhccCC--C--CCCHHHHHHHHHHhC
Confidence 9999999999998874432 2 234444444455443
No 148
>PRK08068 transaminase; Reviewed
Probab=99.11 E-value=3e-10 Score=116.50 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=69.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.++|++..+.+++|.+.+ +++|+++|++|+++||+||+|+.-.+.... ..+....+. .+..|+++||||+||++
T Consensus 168 ~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 168 AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGA--KDVGIELYTLSKTFNMA 245 (389)
T ss_pred ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCc--cCCEEEEecchhccCCc
Confidence 345666677999999998 578888999999999999999753332111 111222221 23568999999999999
Q ss_pred c---ceeecCHHHHHHHHhcCCc
Q psy2206 373 G---GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~ 392 (430)
| ||+++++++++.+......
T Consensus 246 GlRiG~~~~~~~l~~~l~~~~~~ 268 (389)
T PRK08068 246 GWRVAFAVGNESVIEAINLLQDH 268 (389)
T ss_pred cceeEeEecCHHHHHHHHHHHhh
Confidence 9 9999999999998875533
No 149
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.11 E-value=3.3e-10 Score=115.31 Aligned_cols=113 Identities=13% Similarity=0.229 Sum_probs=78.4
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCC-CCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGID-PREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~-~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+..++++.+. ......+. +.+.+|+++||||.||++
T Consensus 159 ~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (382)
T PRK06108 159 TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGR-APSFLDIAEPDDRIIFVNSFSKNWAMT 237 (382)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCC-CCCHhhcCCCcCCEEEEeechhhccCc
Confidence 456667788999998775 7889999999999999999998776652111 11111121 124579999999999988
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++++.+.... .+. +...+++...++.++|+
T Consensus 238 G~RiG~~~~~~~~~~~~~~~~-~~~-~~~~~~~~q~a~~~~l~ 278 (382)
T PRK06108 238 GWRLGWLVAPPALGQVLEKLI-EYN-TSCVAQFVQRAAVAALD 278 (382)
T ss_pred ccceeeeeCCHHHHHHHHHHH-Hhc-ccCCChHHHHHHHHHHh
Confidence 8 99999999999887643 221 22344555445555553
No 150
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.11 E-value=7.2e-10 Score=110.98 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. + +.++|+.-.+.+++|.+.|+++|.++|++|++++++|++|++|... +.
T Consensus 113 ~~~l~~~l~~~-----~------~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~---------~~ 172 (355)
T TIGR03301 113 LNRIEEALAAD-----P------DITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIP---------ID 172 (355)
T ss_pred HHHHHHHHHhC-----C------CceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcc---------cc
Confidence 67888887652 1 2345555667788999999999999999999999999999865321 11
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCccc---------------ccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHVRS---------------YATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~~~---------------~s~s~~P~~~aaalaaL~~l~ 415 (430)
+...++|++++|++|++ |++| |++.+++++++.+.....++. +....++..+.++.++++.+.
T Consensus 173 ~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~ 252 (355)
T TIGR03301 173 IEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELE 252 (355)
T ss_pred hhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 22225689999999987 5667 999999999988763222211 111345566666778888876
Q ss_pred ccCCchHH
Q psy2206 416 GLENGDEG 423 (430)
Q Consensus 416 ~~~~~~~~ 423 (430)
++.+.++.
T Consensus 253 ~~g~~~~~ 260 (355)
T TIGR03301 253 AEGGVPAR 260 (355)
T ss_pred HcccHHHH
Confidence 65433433
No 151
>PRK08912 hypothetical protein; Provisional
Probab=99.11 E-value=3.1e-10 Score=116.24 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=70.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|+..+++.. ...+....+. .+.+|+++||||+||++
T Consensus 160 ~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~ 237 (387)
T PRK08912 160 TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGM--RERTVKIGSAGKIFSLT 237 (387)
T ss_pred ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCc--cCceEEEeechhhccCc
Confidence 345556688999999887 77799999999999999999986666431 1222222222 24579999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 238 GlRiG~~~~~~~~~~~l~~~~ 258 (387)
T PRK08912 238 GWKVGFVCAAPPLLRVLAKAH 258 (387)
T ss_pred CceeEEEecCHHHHHHHHHHH
Confidence 9 99999999999887654
No 152
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.10 E-value=3.8e-10 Score=115.41 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=70.0
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|....++ +........+.. .+.+|+++||||+||++
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 244 (385)
T PRK09276 167 AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYD--GYKPPSFLEVPGAKDVGIEFHSLSKTYNMT 244 (385)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecC--CCCCCChhccCCCcCCEEEEecchhhcCCc
Confidence 446666688999999998 688899999999999999999865553 211111111211 24578999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 245 GlRiG~~i~~~~l~~~~~~~~ 265 (385)
T PRK09276 245 GWRIGFAVGNADLIAGLGKVK 265 (385)
T ss_pred chhheeeeCCHHHHHHHHHHH
Confidence 9 99999999999888743
No 153
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.10 E-value=3.3e-10 Score=115.82 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=69.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...+.. ........+.. .+.+|+++||||+||++
T Consensus 165 ~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~--~~~~~~~~~~~~~~~~i~~~SfSK~~g~~ 242 (383)
T TIGR03540 165 AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDG--YKAPSFLEVDGAKDVGIEFHSLSKTYNMT 242 (383)
T ss_pred ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCC--CCCcCcccCCCcccCEEEEEecccccCCc
Confidence 346666678999999998 7899999999999999999998655532 11111111111 23568899999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 243 GlRiG~~i~~~~l~~~~~~~~ 263 (383)
T TIGR03540 243 GWRIGMAVGNADLIAGLGKVK 263 (383)
T ss_pred cceeeEEeCCHHHHHHHHHHH
Confidence 9 99999999998887643
No 154
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.10 E-value=1.7e-10 Score=116.47 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=84.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|+++.+.+++|.+.|+++|.++|++||+++++|++|+.|... .++....+|+++.|.+|.+|.+| |
T Consensus 138 ~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~g~g 208 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKIT---------VDLSADRIDLISCSGHKIYGPKGIG 208 (353)
T ss_pred CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcc---------ccccccCCCEEEeehhhcCCCCceE
Confidence 3568889999999999999999999999999999999999877541 22222357999999999988776 8
Q ss_pred eeecCHHHHHHHHhcC-------CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 375 YVAGSKSTIDYIRANS-------HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~-------~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
++..+++..+..+... .......++++...++..++++++.. +.+...++++
T Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~ 267 (353)
T TIGR03235 209 ALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARR--NAQAWEVKLR 267 (353)
T ss_pred EEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 8877776543211100 00012344566667778888888753 3334444443
No 155
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.10 E-value=4e-10 Score=115.72 Aligned_cols=123 Identities=15% Similarity=0.260 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|... ..
T Consensus 149 ~~~l~~~i~~-------------~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~---------~~ 206 (403)
T TIGR01979 149 LDDLEKLLTE-------------KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMP---------VD 206 (403)
T ss_pred HHHHHHHhcc-------------CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccc---------cC
Confidence 5666666543 3568889999999999999999999999999999999999866421 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCC------------------cccc-cCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSH------------------VRSY-ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~------------------~~~~-s~s~~P~~~aaalaaL~ 412 (430)
+...++|+++.|++|.+|..| |++..++++++.+..... ...| ..+++...++++.++++
T Consensus 207 ~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 286 (403)
T TIGR01979 207 VQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAID 286 (403)
T ss_pred ccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHH
Confidence 222246899999999999777 899899888776542110 0011 22345555666777888
Q ss_pred HHHcc
Q psy2206 413 IIMGL 417 (430)
Q Consensus 413 ~l~~~ 417 (430)
.+.+.
T Consensus 287 ~~~~~ 291 (403)
T TIGR01979 287 YLEAI 291 (403)
T ss_pred HHHHh
Confidence 77543
No 156
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.10 E-value=4e-10 Score=111.61 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred ceEEEEEcCccCCCCcccCHHH---HHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPE---IVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~---I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++.+|+++++.+++|.+.|+++ |+++|++||+++|+||+|+.+.++..+.+... .......|++++|++|.++..
T Consensus 132 ~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~K~~~~~ 209 (350)
T cd00609 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALA--LLDAYERVIVLRSFSKTFGLP 209 (350)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccccccc--CcCccCcEEEEeecccccCCc
Confidence 3557777779999999998554 45899999999999999987766543332111 122235689999999999755
Q ss_pred c---ceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 G---G~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
| |++++++ ++++.++...... +...++..+.++..+++..
T Consensus 210 g~~~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 253 (350)
T cd00609 210 GLRIGYLIAPPEELLERLKKLLPYT--TSGPSTLSQAAAAAALDDG 253 (350)
T ss_pred ccceEEEecCHHHHHHHHHHHHHhc--ccCCChHHHHHHHHHHhCc
Confidence 5 8999998 8999888755332 2334555555566666654
No 157
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.10 E-value=4.2e-10 Score=115.37 Aligned_cols=110 Identities=18% Similarity=0.292 Sum_probs=77.0
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++|++.++.+++|.+.+ +++|+++|++|+++||+||+|+..+++.....+....+. .+..|+++||||++|++|
T Consensus 164 ~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~~l~Gl 241 (384)
T PRK06348 164 KAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGM--PERTITFGSFSKDFAMTGW 241 (384)
T ss_pred cEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCC--cCcEEEEecchhccCCccc
Confidence 35555688999999887 788888999999999999999866554321121222121 245799999999999998
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+........++ .+++...++..++
T Consensus 242 RiG~~v~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l 279 (384)
T PRK06348 242 RIGYVIAPDYIIETAKIINEGICFS--APTISQRAAIYAL 279 (384)
T ss_pred cceeeecCHHHHHHHHHHHHhccCC--CCHHHHHHHHHHH
Confidence 99999999999887654322232 3444444444444
No 158
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.10 E-value=5.5e-10 Score=117.44 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++. + .+.++++++. .|.+.|+++|.++|+++|++++||++|++|.++..+.. .+
T Consensus 171 ~~~L~~~l~~~---------~--~~lvi~~~s~---~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~----~~ 232 (452)
T PTZ00094 171 YDKLEELAKAF---------R--PKLIIAGASA---YPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLP----SP 232 (452)
T ss_pred HHHHHHHHHHh---------C--CCEEEEeCCC---CCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCC----CC
Confidence 78899888652 1 1223343554 56778899999999999999999999999987643221 11
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccc---cCCCcHHHHHHHHHHHHHHHcc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSY---ATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~---s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+ ..+|++++|++|++ |..||++..++++.+.+........+ ..++++..+++..++++.+...
T Consensus 233 ~--~~~D~l~~S~hK~l~GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~ 299 (452)
T PTZ00094 233 F--PYADVVTTTTHKSLRGPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSP 299 (452)
T ss_pred C--CCCcEEEcCCccCCCCCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhCh
Confidence 2 25799999999988 67889888877666554433222222 3367778888888899988654
No 159
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.09 E-value=4.5e-10 Score=114.94 Aligned_cols=113 Identities=13% Similarity=0.200 Sum_probs=79.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC-CCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP-TGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~-~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...++. ....+.+.. ....+.+|+++||||.+|.+
T Consensus 165 ~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~~~~ 243 (393)
T PRK05764 165 TKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLS-PELRDRTITVNGFSKAYAMT 243 (393)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcC-CCCcCCEEEEecCcccccCc
Confidence 446667788899999875 8889999999999999999998665532 112222211 11124589999999999988
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++++.+...... ++...+++..+++.+.|+
T Consensus 244 G~RiG~i~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~ 284 (393)
T PRK05764 244 GWRLGYAAGPKELIKAMSKLQSH--STSNPTSIAQYAAVAALN 284 (393)
T ss_pred cceeEEEecCHHHHHHHHHHHhh--cccCCChHHHHHHHHHHc
Confidence 8 9999999999988764432 222345555555555553
No 160
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.09 E-value=8.2e-10 Score=111.96 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++. + +..+|.+-.+.+++|.+.|+++|.++|++||+++++|++|++|... ..
T Consensus 117 ~~~l~~~l~~~-----~------~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~---------~~ 176 (363)
T TIGR02326 117 VVEVEAILAAD-----P------AITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIP---------ID 176 (363)
T ss_pred HHHHHHHHhhC-----C------CccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcc---------cc
Confidence 68888888652 1 2335666666788999999999999999999999999999865321 12
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCc------------------ccccCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHV------------------RSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~------------------~~~s~s~~P~~~aaalaaL~ 412 (430)
+...++|++++|++|++ |.+| |++..++++++.+.....+ ..|+ .+++...+..++++
T Consensus 177 ~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft--~~~~~~~al~~al~ 254 (363)
T TIGR02326 177 IAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFT--SPTHVVHAFAQALL 254 (363)
T ss_pred hhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCC--CcHHHHHHHHHHHH
Confidence 22234689999999988 5677 9999999888765432111 1233 35566666778888
Q ss_pred HHHccCCchHHHhhhh
Q psy2206 413 IIMGLENGDEGNVRHS 428 (430)
Q Consensus 413 ~l~~~~~~~~~~~r~~ 428 (430)
.+..+.+.++..++++
T Consensus 255 ~l~~~g~~~~~~~~~~ 270 (363)
T TIGR02326 255 ELEKEGGVAARHQRYQ 270 (363)
T ss_pred HHHHhhCHHHHHHHHH
Confidence 8766654554444443
No 161
>PLN02509 cystathionine beta-lyase
Probab=99.08 E-value=3.5e-10 Score=119.40 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=82.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.||+|.+.|+++|+++|++||++||+||+|+.++++. . +. ..+||++.|++|.++.
T Consensus 217 ~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~---p------l~-~gaDivv~S~tK~l~G~gdv 286 (464)
T PLN02509 217 QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR---P------LE-LGADIVMHSATKFIAGHSDV 286 (464)
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC---h------hh-cCCcEEEecCcccccCCCcc
Confidence 46789999999999999999999999999999999999998876542 1 11 2458999999999975
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++. ++.+.+.++.... ...+.++|..++.++..|+.+
T Consensus 287 ~gG~v~~~~~~l~~~~~~~~~--~~g~~l~p~~A~l~lr~L~tL 328 (464)
T PLN02509 287 MAGVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_pred ceeEEEeccHHHHHHHHHHHH--hcCCCcCHHHHHHHHhhhhhH
Confidence 3678775 4444444332111 124557999999999998887
No 162
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.08 E-value=1e-09 Score=113.49 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++++. ++++|++ .+. .|...|+++|.++|++||+++|+||||+.|.++. |.. ..
T Consensus 154 ~~~l~~~i~~~------------~~k~v~~~~~~---~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~---g~~-~~ 214 (416)
T PRK00011 154 YDEVEKLALEH------------KPKLIIAGASA---YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAA---GVH-PS 214 (416)
T ss_pred HHHHHHHHHhc------------CCCEEEECCCc---CCCccCHHHHHHHHHHcCCEEEEECcchhccccc---Ccc-CC
Confidence 67888887641 1234444 444 4566799999999999999999999998776542 111 11
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+. .+|++++|++|++ |..||+++++ +++++.++.....+.++++..+..++...+.++++
T Consensus 215 ~~~--~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~ 277 (416)
T PRK00011 215 PVP--HADVVTTTTHKTLRGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEAL 277 (416)
T ss_pred CCC--CCcEEEecCCcCCCCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHH
Confidence 121 4689999999999 5678999985 78999888755554444444444444334444444
No 163
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.08 E-value=6.1e-10 Score=114.55 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=70.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|+...+... ...+....+. .+..|+++||||+||++
T Consensus 171 ~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~~~~ 248 (394)
T PRK05942 171 AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGA--KDIGVEFHTLSKTYNMA 248 (394)
T ss_pred ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCc--cccEEEEecchhccCCh
Confidence 456666688999999998 88999999999999999999986655321 1122111111 24568899999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.++...
T Consensus 249 GlRiG~i~~~~~l~~~l~~~~ 269 (394)
T PRK05942 249 GWRVGFVVGNRHIIQGLRTLK 269 (394)
T ss_pred hhheeeeecCHHHHHHHHHHH
Confidence 9 99999999999988644
No 164
>PRK07777 aminotransferase; Validated
Probab=99.07 E-value=6.4e-10 Score=113.95 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=71.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC-CCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP-TGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~-~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+.+|++.++.+++|.+.+ +++|+++|++|++++|+||+|+...+.. ....+.+..+. .+.+|+++||||+||++
T Consensus 160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~ 237 (387)
T PRK07777 160 TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGM--RERTVTISSAAKTFNVT 237 (387)
T ss_pred cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCC--cCcEEEEeechhhccCc
Confidence 446677789999999875 8899999999999999999997655532 12233322222 24689999999999988
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 238 GlRiG~~~~~~~l~~~~~~~~ 258 (387)
T PRK07777 238 GWKIGWACGPAPLIAAVRAAK 258 (387)
T ss_pred CceeEEEecCHHHHHHHHHHH
Confidence 9 99999999999887644
No 165
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.06 E-value=4.6e-10 Score=115.22 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++.+++ ++++|++..+.+++|.+.| +++|+++|++|++++|+||+|+..++... .. ..
T Consensus 156 ~~~l~~~i~~-------------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~-~~ 220 (391)
T PRK08361 156 PDELLELITK-------------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA-KH-YP 220 (391)
T ss_pred HHHHHHhccc-------------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC-CC-CC
Confidence 5667666543 2446667788999999999 89999999999999999999986655321 11 11
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhc
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~ 389 (430)
..... .+.+|+++||||+||++| ||+++++++++.+...
T Consensus 221 ~~~~~-~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~ 262 (391)
T PRK08361 221 MIKYA-PDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKL 262 (391)
T ss_pred HhhcC-CCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHH
Confidence 11122 245899999999999998 9999999999887654
No 166
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=113.21 Aligned_cols=103 Identities=21% Similarity=0.200 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-Cccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~ 348 (430)
+++|++++++ ++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+..++.... ..+.
T Consensus 168 ~~~l~~~~~~-------------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~ 234 (405)
T PRK06207 168 LDQLEEAFKA-------------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLR 234 (405)
T ss_pred HHHHHHhhhh-------------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchh
Confidence 5667776654 2446777888999999998 888899999999999999999865553211 1111
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
.+... .+..|+++||||+|+++| ||+++++++++.+....
T Consensus 235 -~~~~~-~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~ 277 (405)
T PRK06207 235 -ALPID-PENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQ 277 (405)
T ss_pred -cCCCC-cCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHH
Confidence 11222 235699999999999888 99999999999887644
No 167
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.05 E-value=7.2e-10 Score=114.00 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|++..+.+++|.+.|+++|+++|++||+++++|++|+.|.+. ..
T Consensus 150 ~~~l~~~i~~-------------~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~---------~~ 207 (401)
T PRK10874 150 VDLLPELITP-------------RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFP---------AD 207 (401)
T ss_pred HHHHHHhcCc-------------CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccccc---------CC
Confidence 5667666532 4568889999999999999999999999999999999999866432 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC------------------Ccccc-cCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS------------------HVRSY-ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~------------------~~~~~-s~s~~P~~~aaalaaL~ 412 (430)
+...++|+++.|++|.+|..| |++..++++++.+.... .+..| ..+++.+..++..++++
T Consensus 208 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~ 287 (401)
T PRK10874 208 VQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALE 287 (401)
T ss_pred chhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHH
Confidence 211246899999999998777 89999999887654211 00111 12345456666777888
Q ss_pred HHHcc
Q psy2206 413 IIMGL 417 (430)
Q Consensus 413 ~l~~~ 417 (430)
.+.+.
T Consensus 288 ~l~~~ 292 (401)
T PRK10874 288 WLADI 292 (401)
T ss_pred HHHHh
Confidence 77544
No 168
>PRK08175 aminotransferase; Validated
Probab=99.05 E-value=9.9e-10 Score=113.04 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCH---HHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL---PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L---~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++++++.. .++++|++..+.+++|.+.+. ++|+++|++||++||+||+|+...++ +.....
T Consensus 151 ~~~l~~~l~~~~----------~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~--~~~~~~ 218 (395)
T PRK08175 151 FNELERAIRESY----------PKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYD--GWKAPS 218 (395)
T ss_pred HHHHHHHHhhcc----------CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccC--CCCCcc
Confidence 577777776421 134566777889999999885 89999999999999999999865553 211111
Q ss_pred ecCCC-CCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 350 YFGID-PREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g~~-~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
...+. ..+..|+++||||+||++| ||+++++++++.+....
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~ 263 (395)
T PRK08175 219 IMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIK 263 (395)
T ss_pred hhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHH
Confidence 11111 1234688999999999988 99999999999887643
No 169
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.05 E-value=1.5e-09 Score=111.57 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=76.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc--cce---ecCCCCCCccEEEeCccch
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG--VTE---YFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG--~~e---~~g~~~~~~dIv~~TlSKa 368 (430)
+++|++.++.+++|.+.+ +.+|+++|++|+++||+||+|+...+...... ... ..+....+..|+++||||+
T Consensus 167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 246 (396)
T PRK09147 167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR 246 (396)
T ss_pred cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence 345666789999999986 88888889999999999999987655431011 111 1111111356999999999
Q ss_pred hcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 369 FGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 369 ~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
|+++| ||+++++++++.+..... + .+.+.+++..+++.+++
T Consensus 247 ~~~~GlRiG~~~~~~~l~~~~~~~~~-~-~~~~~~~~~q~a~~~~~ 290 (396)
T PRK09147 247 SNVPGLRSGFVAGDAALLKKFLLYRT-Y-HGCAMPPAVQAASIAAW 290 (396)
T ss_pred cCCccceeeeecCCHHHHHHHHHHhh-h-cccCCCHHHHHHHHHHh
Confidence 99999 999999999988875432 1 12334444444444444
No 170
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.05 E-value=5.4e-10 Score=115.34 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=80.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|.+.+++|.+.++++|+++|++||++||+||+|+.+..+. . +. ..+||++.|++|.++..
T Consensus 146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~---p------~~-~gaDivv~S~sK~l~g~~~~ 215 (388)
T PRK07811 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQ---P------LA-LGADVVVHSTTKYIGGHSDV 215 (388)
T ss_pred CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCC---c------hh-hCCcEEEecCceeecCCCCc
Confidence 46789999999999999999999999999999999999998765421 1 11 24589999999999864
Q ss_pred -cceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++ ++++++.++.... ..+..++|..++.++..|+.+
T Consensus 216 ~gG~vv~~~~~l~~~~~~~~~--~~g~~~s~~~a~l~~~~L~tl 257 (388)
T PRK07811 216 VGGALVTNDEELDEAFAFLQN--GAGAVPGPFDAYLTLRGLKTL 257 (388)
T ss_pred EEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhccCcH
Confidence 687765 5777776654221 224556787777666666554
No 171
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.05 E-value=1.9e-10 Score=114.66 Aligned_cols=130 Identities=19% Similarity=0.134 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC--cccCHHHHHHHHHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++++++.. ..+. .++++|+++++.++.| ...++++|+++|++||++|++||||..+..+..|..+. .
T Consensus 110 ~~~l~~~i~~~~-----~~~~-~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~-~ 182 (338)
T cd06502 110 PEDLEAAIRPRD-----DIHF-PPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALK-T 182 (338)
T ss_pred HHHHHHHhhccC-----CCcC-CcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHH-H
Confidence 567777775420 0011 1356788888877633 34568889999999999999999997554332232211 1
Q ss_pred cCCCCCCccEEEeCccchhccccce-eecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMGGY-VAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~GG~-v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.. ...|+++.|+||++|++||+ +++++++++.++.....+..+...+++.+++++++|+
T Consensus 183 ~~---~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~ 242 (338)
T cd06502 183 YK---SGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALE 242 (338)
T ss_pred HH---hcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhc
Confidence 11 24578899999999988775 5689999988876443322233355566666666654
No 172
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.05 E-value=3.9e-10 Score=116.78 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=85.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|++.|++|.+.|+++|+++|++||+++++||+|+.++.- ..+. ..+||++.|++|.++..
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~---------~Pl~-~GaDivv~S~tK~l~Gh~d~ 215 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINS---------RPFE-MGVDISIQAATKYIVGHSDV 215 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccC---------Cccc-cCceEEEEeCCeEecCCCCE
Confidence 4679999999999999999999999999999999999999876421 1122 35699999999999644
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++++++.+.++.... ..+..++|..++.++..|+.+
T Consensus 216 ~~G~~~~~~~~~~~l~~~~~--~~G~~~~p~~a~l~~rgl~TL 256 (394)
T PRK09028 216 MLGTATANEKHWDQLREHSY--LMGQCTSPDDVYLAMRGLRTL 256 (394)
T ss_pred EEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHcccCcH
Confidence 6888888887776664322 246678999999988877665
No 173
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.04 E-value=1e-09 Score=112.83 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++.+++ ++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...++....-...
T Consensus 150 ~~~l~~~i~~-------------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~ 216 (389)
T PRK05957 150 PEAIEQAITP-------------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPG 216 (389)
T ss_pred HHHHHHhcCc-------------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChh
Confidence 5667766542 3456677789999999987 89999999999999999999986555431110111
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
.. ....+..|+++||||.+|++| ||+++++++++.+....
T Consensus 217 ~~-~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~ 259 (389)
T PRK05957 217 SI-PGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQ 259 (389)
T ss_pred hC-CCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHH
Confidence 11 111234689999999999999 99999999999988754
No 174
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.04 E-value=1.7e-09 Score=108.99 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. ++.+|++..+.+++|.+.|+++|.++|++||+++++|++|++|... +.
T Consensus 113 ~~~l~~~i~~~------------~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~---------~~ 171 (356)
T cd06451 113 PEEIAEALEQH------------DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEP---------FR 171 (356)
T ss_pred HHHHHHHHhcc------------CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcc---------cc
Confidence 67777777531 2345666677889999999999999999999999999999865321 11
Q ss_pred CCCCCccEEEeCccchhccc-c-ceeecCHHHHHHHHh--cCCcc---------------cccCCCcHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSM-G-GYVAGSKSTIDYIRA--NSHVR---------------SYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~-G-G~v~gs~~li~~l~~--~~~~~---------------~~s~s~~P~~~aaalaaL~~ 413 (430)
+...++|++++|++|.++.+ | |+++.++++++.+.. ....+ ..++++++...+++.++++.
T Consensus 172 ~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~ 251 (356)
T cd06451 172 MDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDL 251 (356)
T ss_pred ccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHH
Confidence 11124689999999999864 4 899999999888763 11111 23445566666777788887
Q ss_pred HHcc
Q psy2206 414 IMGL 417 (430)
Q Consensus 414 l~~~ 417 (430)
+...
T Consensus 252 l~~~ 255 (356)
T cd06451 252 ILEE 255 (356)
T ss_pred HHHh
Confidence 7653
No 175
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.04 E-value=1.2e-09 Score=112.45 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=70.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|+...+.. ........+.. .+.+|+++||||+||++
T Consensus 167 ~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 244 (399)
T PRK07681 167 AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDG--NKPISFLSVPGAKEVGVEINSLSKSYSLA 244 (399)
T ss_pred ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCC--CCCCChhhCCCCcccEEEEeecccccCCc
Confidence 446666678999999998 8888999999999999999998655542 11111111211 23579999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 245 GlRiG~~i~~~~l~~~~~~~~ 265 (399)
T PRK07681 245 GSRIGYMIGNEEIVRALTQFK 265 (399)
T ss_pred cceeEEEecCHHHHHHHHHHH
Confidence 9 99999999999887644
No 176
>PRK07049 methionine gamma-lyase; Validated
Probab=99.04 E-value=9.2e-10 Score=115.15 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHh------cCcEEEEeccccccccCCCCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNK------YKAYLYVDEAHSIGALGPTGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~------y~~~LivDEAh~~G~lG~~GrG 346 (430)
+++|++.+++... ..++++|++|++.||+|.+.++++|.++++. +++++|+||++...++-
T Consensus 159 ~~~l~~~l~~~~~--------~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~----- 225 (427)
T PRK07049 159 EAAIGAAAEAAAA--------KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ----- 225 (427)
T ss_pred HHHHHHHHHhhcc--------CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccC-----
Confidence 4667776654310 1146799999999999999999999999988 89999999997543211
Q ss_pred cceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..+. ...||++.||||++|. .+||+++++++++.++.... .++..++|..+++++..|+.+
T Consensus 226 ----~pl~-~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~--~~g~~ls~~~a~l~~r~L~tl 290 (427)
T PRK07049 226 ----KPLE-HGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRS--AIGTQLDPHSCWMLGRSLETL 290 (427)
T ss_pred ----Cccc-cCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHcCCChH
Confidence 1122 2458999999999983 35999999999998886432 346778999998888887655
No 177
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.04 E-value=2.2e-09 Score=108.88 Aligned_cols=134 Identities=22% Similarity=0.265 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. .+..+|++..+.+++|.+.|+++|.++|+++++++++|.+|++|.. . ..
T Consensus 119 ~~~l~~~l~~~-----------~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~---~------~~ 178 (368)
T PRK13479 119 AAEVEAALAAD-----------PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAI---P------ID 178 (368)
T ss_pred HHHHHHHHHhC-----------CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCc---c------cc
Confidence 67888877642 1234677778888999999999999999999999999999876531 1 12
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCcccc---------------cCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHVRSY---------------ATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~~~~---------------s~s~~P~~~aaalaaL~~l~ 415 (430)
+...++|++++|++|.+ |.+| ||+.+++++++.+.....++.+ ..+++....++..++++.+.
T Consensus 179 ~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~ 258 (368)
T PRK13479 179 IAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELE 258 (368)
T ss_pred ccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHH
Confidence 22234689999999986 6778 9999999999887654322110 01345556666777888776
Q ss_pred ccCCchHHHhh
Q psy2206 416 GLENGDEGNVR 426 (430)
Q Consensus 416 ~~~~~~~~~~r 426 (430)
++.+.++..++
T Consensus 259 ~~~~~~~~~~~ 269 (368)
T PRK13479 259 EEGGVPARGAR 269 (368)
T ss_pred HhhCHHHHHHH
Confidence 65444444333
No 178
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.04 E-value=9.6e-10 Score=113.46 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|... ..
T Consensus 154 ~~~l~~~i~~-------------~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~---------~~ 211 (406)
T PRK09295 154 LETLPALFDE-------------RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHP---------VD 211 (406)
T ss_pred HHHHHHhcCC-------------CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccc---------cC
Confidence 5667666542 3568888899999999999999999999999999999999865321 12
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCC------------c-------c-cccCCCcHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSH------------V-------R-SYATSMPPPVAMQILTSM 411 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~------------~-------~-~~s~s~~P~~~aaalaaL 411 (430)
+...++|+++.|++|.+|..| |++..++++++.+..... . . ....+++...++++.+++
T Consensus 212 ~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al 291 (406)
T PRK09295 212 VQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAAL 291 (406)
T ss_pred chhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHH
Confidence 222356999999999888777 899899988776532100 0 0 012345666777788899
Q ss_pred HHHHccCCchHHHhhh
Q psy2206 412 RIIMGLENGDEGNVRH 427 (430)
Q Consensus 412 ~~l~~~~~~~~~~~r~ 427 (430)
+.+.+. +.+..++++
T Consensus 292 ~~~~~~-g~~~i~~~~ 306 (406)
T PRK09295 292 DYVSAL-GLNNIAEYE 306 (406)
T ss_pred HHHHHh-CHHHHHHHH
Confidence 988654 333344443
No 179
>PRK08960 hypothetical protein; Provisional
Probab=99.04 E-value=1.2e-09 Score=112.14 Aligned_cols=108 Identities=16% Similarity=0.252 Sum_probs=74.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +.+|+++|++||+++|+||+|..-.++.... ...... +..|+++||||+||++|
T Consensus 166 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~---~~~~~~--~~vi~~~S~SK~~g~~G 240 (387)
T PRK08960 166 TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA---SVLEVD--DDAFVLNSFSKYFGMTG 240 (387)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC---Chhhcc--CCEEEEeecccccCCcc
Confidence 446666778999999988 5667777999999999999997544432211 122232 34689999999999988
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++.....+ +...+.+...++.+++
T Consensus 241 lRiG~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l 279 (387)
T PRK08960 241 WRLGWLVAPPAAVPELEKLAQNL--YISASTPAQHAALACF 279 (387)
T ss_pred cEEEEEEcCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHh
Confidence 99999999999887644322 2223444444444444
No 180
>PRK09148 aminotransferase; Validated
Probab=99.03 E-value=1.1e-09 Score=113.33 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=70.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++.+|++..+.+++|.+.+ +++|+++|++|+++||+||+|+...++.... .+.+ ..-. .+..|+++||||++|+
T Consensus 165 ~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~-~~~~-~~~~i~~~SfSK~~~~ 242 (405)
T PRK09148 165 KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQ-VPGA-KDVTVEFTSMSKTFSM 242 (405)
T ss_pred cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhh-CCCc-cCcEEEEeccccccCC
Confidence 3567778888999999998 5788899999999999999998655542111 1111 1111 2346789999999999
Q ss_pred cc---ceeecCHHHHHHHHhcC
Q psy2206 372 MG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~ 390 (430)
+| ||+++++++++.+....
T Consensus 243 pGlR~G~~v~~~~~i~~l~~~~ 264 (405)
T PRK09148 243 AGWRMGFAVGNERLIAALTRVK 264 (405)
T ss_pred cchheeeeeCCHHHHHHHHHHH
Confidence 99 99999999999887643
No 181
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.03 E-value=6.8e-10 Score=114.77 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=83.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.|++|.+.|+++|.++|+++|+++|+||+|..+++.. ++. ..+||++.|++|.++.
T Consensus 138 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~---------pl~-~GaDivv~S~tK~l~G~~d~ 207 (388)
T PRK08861 138 KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQK---------PLE-LGADFVIHSTTKYINGHSDV 207 (388)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCC---------Ccc-cCCCEEEeecceeccCCCcc
Confidence 46789999999999999999999999999999999999998775421 122 2469999999999964
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++ ++++.+.++.... ..+..++|..++.++..|+.+
T Consensus 208 ~gG~i~~~~~~~~~~~~~~~~--~~G~~~~p~~a~l~~rgl~Tl 249 (388)
T PRK08861 208 IGGVLITKTKEHAEELAWWGN--CIGATGTPFDSYMTLRGIRTL 249 (388)
T ss_pred eeEEEEecHHHHHHHHHHHHh--ccCCCCChHHHHHHHhcCCCH
Confidence 4688876 4667666654322 346778999999888877665
No 182
>PRK03321 putative aminotransferase; Provisional
Probab=99.02 E-value=8e-10 Score=111.58 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=77.9
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+++|++..+.+++|.+.|+++|.++++. +++++|+||+|....++........... ..+..|+++||||+||++|
T Consensus 146 ~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~~S~SK~~g~~Gl 223 (352)
T PRK03321 146 TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVLRTFSKAYGLAGL 223 (352)
T ss_pred CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh--hCCCEEEEecchHHhhhHHH
Confidence 4466667899999999999999999987 5999999999975544321111111111 1234689999999999998
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.+...... ...+++...++.++|+
T Consensus 224 RiG~~v~~~~~~~~~~~~~~~----~~~s~~~q~~a~~~l~ 260 (352)
T PRK03321 224 RVGYAVGHPEVIAALRKVAVP----FSVNSLAQAAAIASLA 260 (352)
T ss_pred hhhhhcCCHHHHHHHHHhcCC----CCCCHHHHHHHHHHhc
Confidence 9999999999998875422 2234454444555553
No 183
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.02 E-value=1e-09 Score=113.90 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|... ..
T Consensus 163 ~~~l~~~i~~-------------~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~---------~~ 220 (424)
T PLN02855 163 VEQLKELLSE-------------KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMP---------VD 220 (424)
T ss_pred HHHHHHHhcc-------------CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcC---------CC
Confidence 5666666542 4568899999999999999999999999999999999999765321 12
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC--------------------CcccccCCCcHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS--------------------HVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~--------------------~~~~~s~s~~P~~~aaalaaL 411 (430)
+....+|+++.|++|.+|..| |++..++++++.+.... ..+- ..+.+...++++.+++
T Consensus 221 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e-~GT~~~~~~~~l~~al 299 (424)
T PLN02855 221 VQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFE-AGTPAIGEAIGLGAAI 299 (424)
T ss_pred chhcCCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhcc-CCChHHHHHHHHHHHH
Confidence 222246899999999888777 89999998887654220 0011 2234555666667788
Q ss_pred HHHHccCCchHHHhhh
Q psy2206 412 RIIMGLENGDEGNVRH 427 (430)
Q Consensus 412 ~~l~~~~~~~~~~~r~ 427 (430)
+.+.+. +.+..++++
T Consensus 300 ~~~~~~-g~~~i~~~~ 314 (424)
T PLN02855 300 DYLSEI-GMDRIHEYE 314 (424)
T ss_pred HHHHHh-CHHHHHHHH
Confidence 877554 444444443
No 184
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.02 E-value=1.4e-09 Score=111.41 Aligned_cols=93 Identities=20% Similarity=0.185 Sum_probs=68.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCC-CccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPR-EVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~-~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+.+ +++|+++|++||++||+||+|..-.+... ..........+. ...|+++||||+||++
T Consensus 166 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~g~~ 244 (388)
T PRK07366 166 ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE-VEPPSILQADPEKSVSIEFFTLSKSYNMG 244 (388)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCC-CCCCChhhCCCCcccEEEEeecccccCCc
Confidence 345666679999999987 67778899999999999999986555321 101111112211 2458899999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 245 GlRiG~~v~~~~li~~l~~~~ 265 (388)
T PRK07366 245 GFRIGFAIGNAQLIQALRQVK 265 (388)
T ss_pred chhheehcCCHHHHHHHHHHH
Confidence 9 99999999999887644
No 185
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.01 E-value=1.2e-09 Score=112.34 Aligned_cols=123 Identities=15% Similarity=0.214 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|.+- ..
T Consensus 147 ~~~l~~~i~~-------------~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~---------~~ 204 (398)
T TIGR03392 147 IRQLPELLTP-------------RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGP---------PD 204 (398)
T ss_pred HHHHHHHhcc-------------CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------CC
Confidence 5677766643 3568888999999999999999999999999999999999865421 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCCc------------------ccc-cCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSHV------------------RSY-ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~~------------------~~~-s~s~~P~~~aaalaaL~ 412 (430)
+...++|+++.|++|.+|..| |++..++++++.+...... .-| ..+++.+..+++.++++
T Consensus 205 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~ 284 (398)
T TIGR03392 205 VQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALE 284 (398)
T ss_pred hhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHH
Confidence 111246899889999998777 8999999988766421100 011 22345556667778888
Q ss_pred HHHcc
Q psy2206 413 IIMGL 417 (430)
Q Consensus 413 ~l~~~ 417 (430)
.+.+.
T Consensus 285 ~l~~~ 289 (398)
T TIGR03392 285 WLTDI 289 (398)
T ss_pred HHHHh
Confidence 87543
No 186
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.01 E-value=2.5e-09 Score=110.59 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++++++.++.. ..++++|++..+.+++|.+.|+++|.++|++||++++||++|++|.+. ++
T Consensus 158 ~~~l~~~~~~~----------~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~---------id 218 (406)
T TIGR01814 158 LEDILDTIEKN----------GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVP---------LD 218 (406)
T ss_pred HHHHHHHHHhc----------CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcc---------cc
Confidence 57788877642 125789999999999999999999999999999999999999987541 22
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCc-------cc--------------ccCCCcHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHV-------RS--------------YATSMPPPVAMQILTS 410 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~-------~~--------------~s~s~~P~~~aaalaa 410 (430)
+...++|++++|.+|.+ |.+||++...++..+.+.....+ +. ...+++.+.++++.++
T Consensus 219 ~~~~gvD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~a 298 (406)
T TIGR01814 219 LHDWGVDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGS 298 (406)
T ss_pred cccCCCCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHH
Confidence 32235799999999987 45565544333333222211000 00 0233555667777779
Q ss_pred HHHHHccCCchHHHhhh
Q psy2206 411 MRIIMGLENGDEGNVRH 427 (430)
Q Consensus 411 L~~l~~~~~~~~~~~r~ 427 (430)
|+.+.+. +.+..++++
T Consensus 299 l~~~~~~-g~~~i~~~~ 314 (406)
T TIGR01814 299 LDIFDQA-GMEALRKKS 314 (406)
T ss_pred HHHHHhc-CHHHHHHHH
Confidence 9998655 334444443
No 187
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.01 E-value=7.7e-10 Score=113.24 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=80.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.++.|.+.++++|+++|++||+++|+||+|+.++++. .+. ..+||+++|+||.++.
T Consensus 136 ~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~---------p~~-~g~di~i~S~sK~~~g~~d~ 205 (366)
T PRK08247 136 NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR---------PLE-EGADIVIHSATKYLGGHNDV 205 (366)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---------chh-cCCcEEEeecceeccCCCce
Confidence 45689999999999999999999999999999999999997665431 111 2468999999999974
Q ss_pred ccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++++ +++++.++.... ..+..++|..++.++.+|+.+
T Consensus 206 ~~G~iv~~~~~l~~~~~~~~~--~~g~~~s~~~a~l~~~~l~tl 247 (366)
T PRK08247 206 LAGLVVAKGQELCERLAYYQN--AAGAVLSPFDSWLLIRGMKTL 247 (366)
T ss_pred eeeEEecChHHHHHHHHHHHH--hcCCCCChHHHHHHHhccCcH
Confidence 57888886 677777664321 124456777777776666543
No 188
>PRK07683 aminotransferase A; Validated
Probab=99.01 E-value=1.5e-09 Score=111.43 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=72.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|+++|++||+||+|+...+++....+....+. .+.+|+++||||++|++|
T Consensus 162 ~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~pG 239 (387)
T PRK07683 162 TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEM--REKTIVINGLSKSHSMTG 239 (387)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCC--cCCeEEEeeccccccCcc
Confidence 456778889999999876 889999999999999999999876665433333332222 234799999999999999
Q ss_pred ---ceeecCHHHHHHHHhc
Q psy2206 374 ---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~ 389 (430)
||+++++++++.+...
T Consensus 240 lRiG~i~~~~~l~~~~~~~ 258 (387)
T PRK07683 240 WRIGFLFAPSYLAKHILKV 258 (387)
T ss_pred ceeEEEEcCHHHHHHHHHH
Confidence 9999999999988764
No 189
>PRK12414 putative aminotransferase; Provisional
Probab=99.01 E-value=1.4e-09 Score=111.64 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=70.2
Q ss_pred eEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+. ++.+|+++|++|++++|+||+|....++.. ...+....+. .+..|+++||||+||++
T Consensus 163 ~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~~~p 240 (384)
T PRK12414 163 TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHREL--AERSVIVSSFGKSYHVT 240 (384)
T ss_pred cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCc--cCcEEEEecccccccCc
Confidence 45667778999999985 488899999999999999999987655421 1122222122 23469999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 241 GlRiG~~v~~~~l~~~l~~~~ 261 (384)
T PRK12414 241 GWRVGYCLAPAELMDEIRKVH 261 (384)
T ss_pred cceEEEEecCHHHHHHHHHHH
Confidence 9 99999999999887744
No 190
>PRK02948 cysteine desulfurase; Provisional
Probab=99.01 E-value=1.1e-09 Score=111.64 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++ ++++|+++.+++++|.+.|+++|.++|++||+++++|++|++|...- .
T Consensus 128 ~~~l~~~l~~-------------~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~---------~ 185 (381)
T PRK02948 128 LVDLERAITP-------------DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPI---------D 185 (381)
T ss_pred HHHHHHhcCC-------------CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhcccccc---------C
Confidence 5777766543 35689999999999999999999999999999999999998764321 1
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHH-HHHHHh---cCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKST-IDYIRA---NSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~l-i~~l~~---~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+....+|+++.|++|.+|..| |++..++++ ...+.. ....+..+ +++++..+++.++++.+.
T Consensus 186 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~a~~~al~~~~ 252 (381)
T PRK02948 186 VFEMGIDSLSVSAHKIYGPKGVGAVYINPQVRWKPVFPGTTHEKGFRPG-TVNVPGIAAFLTAAENIL 252 (381)
T ss_pred cccCCCCEEEecHHhcCCCCcEEEEEEcCCCCCCCcccCCCCCCCcCCC-CccHHHHHHHHHHHHHHH
Confidence 112246899999999999777 887777654 111110 01122333 345555556666776653
No 191
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.01 E-value=6.8e-10 Score=110.03 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+++|+++|++. +..+.++++.+ +.+|.+.|+++|+++|++||++|++||||+.++ +++......
T Consensus 142 ~~~l~~~l~~~----------~~~k~v~l~~p--~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~--- 206 (294)
T cd00615 142 PETFKKALIEH----------PDAKAAVITNP--TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA--- 206 (294)
T ss_pred HHHHHHHHHhC----------CCceEEEEECC--CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcch---
Confidence 67788877652 11244555544 458999999999999999999999999998643 222111111
Q ss_pred CCCCCCccEEEeCccchhcc--ccceeecCHHHH--HHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS--MGGYVAGSKSTI--DYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li--~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
. ..++|+++.|++|+++. .||++..+.+.+ +.+.... ....+++++...+++...+++.+.
T Consensus 207 -~-~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~-~~~~ttsps~~~~asl~~a~~~~~ 271 (294)
T cd00615 207 -A-MAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEAL-NLHQSTSPSYLILASLDVARAMMA 271 (294)
T ss_pred -h-hcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHH-HHHCCCCcHHHHHHHHHHHHHHHH
Confidence 1 13579999999999974 356665554422 2222211 122355667777777777887774
No 192
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.01 E-value=1.1e-09 Score=112.95 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=83.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|+++++.+++|.+.|+++|+++|+++|++||+||+|..++... ++. ..+||++.|+||.++.
T Consensus 136 ~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~---------pl~-~gaDivv~S~sK~l~G~~~~ 205 (382)
T TIGR02080 136 KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQN---------PLA-LGADLVLHSCTKYLNGHSDV 205 (382)
T ss_pred CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCC---------chh-hCCCEEEeecceeccCCCCc
Confidence 35689999999999999999999999999999999999997664321 111 2358999999999863
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+|++++ ++++++.++.... ..+..++|..++.++..++.+
T Consensus 206 ~~G~i~~~~~~~~~~l~~~~~--~~g~~~sp~~a~l~lr~l~tl 247 (382)
T TIGR02080 206 IAGAVIAKDPQVAEELAWWAN--NLGVTGGAFDSYLTLRGLRTL 247 (382)
T ss_pred eeEEEEeCCHHHHHHHHHHHH--ccCCCCCHHHHHHHHcccchH
Confidence 3687655 7888887765332 236678999999888887766
No 193
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.00 E-value=1.8e-09 Score=109.50 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++.+|++..+.+++|.+.|+++|.++|++||++|++|++|+.|.+. +.
T Consensus 129 ~~~l~~~l~~-------------~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~---------~~ 186 (373)
T cd06453 129 LEALEKLLTE-------------RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMP---------VD 186 (373)
T ss_pred HHHHHHHhcC-------------CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCcee---------ee
Confidence 5777777643 3568888999999999999999999999999999999999865431 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~ 388 (430)
+....+|+++.|++|.++++| |++++++++++.++.
T Consensus 187 ~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~ 223 (373)
T cd06453 187 VQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPP 223 (373)
T ss_pred ccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCC
Confidence 111246899899999998776 899999998887664
No 194
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.00 E-value=8.2e-10 Score=113.20 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++++++++++ ++++|++|++.+++|.+.|+++|+++|+++|+++|+||+++.+.++. .
T Consensus 126 ~~~l~~~i~~-------------~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~-------p-- 183 (364)
T PRK07269 126 EEELIAAIEE-------------DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQR-------P-- 183 (364)
T ss_pred HHHHHHhcCc-------------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC-------c--
Confidence 5666666543 46789999999999999999999999999999999999987654321 1
Q ss_pred CCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. ...||++.|++|.++. .||+|++ ++++++.++... . ..+..++|..++.++..|+.+
T Consensus 184 l~-~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~-~~G~~~s~~~a~l~~~~L~tL 247 (364)
T PRK07269 184 IE-LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-N-TTGAVLSPFDSYLLMRGLKTL 247 (364)
T ss_pred hh-hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH-H-HhCCCCCHHHHHHHHcCCCcH
Confidence 21 3468999999999974 5788776 577877776422 1 235678999999888887765
No 195
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.00 E-value=1.1e-09 Score=113.43 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC--cE
Q psy2206 253 TERSKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK--AY 328 (430)
Q Consensus 253 ~~a~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~--~~ 328 (430)
...+.+.+.+||+...- ...+++++++|++ ++++|++|++.|+.|.+.|+++|+++|++++ ++
T Consensus 115 ~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~-------------~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~ 181 (395)
T PRK08114 115 QDFCSKILSKLGVTTTWFDPLIGADIAKLIQP-------------NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAV 181 (395)
T ss_pred HHHHHHHHHhcCcEEEEECCCCHHHHHHhcCC-------------CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCE
Confidence 34445667788874322 1225677777643 4679999999999999999999999999984 99
Q ss_pred EEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHH
Q psy2206 329 LYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVA 404 (430)
Q Consensus 329 LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~ 404 (430)
++||.+++.+++ +......+||++.|.+|.++. .+|+++.++++.+.++... ...+..++|..+
T Consensus 182 lvVDnT~a~p~~----------~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~--~~~G~~~~p~~a 249 (395)
T PRK08114 182 IMIDNTWAAGVL----------FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS--YLMGQMVDADTA 249 (395)
T ss_pred EEEECCCccccc----------cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH--HhccCCCCHHHH
Confidence 999999987653 111123579999999999964 4588888888766665432 234678899999
Q ss_pred HHHHHHHHHH
Q psy2206 405 MQILTSMRII 414 (430)
Q Consensus 405 aaalaaL~~l 414 (430)
+.++..|+.+
T Consensus 250 ~l~~rgl~TL 259 (395)
T PRK08114 250 YMTSRGLRTL 259 (395)
T ss_pred HHHHcCCCcH
Confidence 9887776654
No 196
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.00 E-value=2.5e-09 Score=109.86 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=76.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC--CCccce---ecCCCCCCccEEEeCccch
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGVTE---YFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~~e---~~g~~~~~~dIv~~TlSKa 368 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|....+... ...... ..+....+..|+++||||+
T Consensus 166 ~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 245 (393)
T TIGR03538 166 CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKR 245 (393)
T ss_pred ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhh
Confidence 345666689999999988 88899999999999999999986544321 111111 1111112346999999999
Q ss_pred hcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 369 FGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 369 ~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
|+++| ||+++++++++.+..... + .+.+.+++...++.+++
T Consensus 246 ~~~~GlRvG~~i~~~~l~~~~~~~~~-~-~~~~~~~~~q~~~~~~l 289 (393)
T TIGR03538 246 SNLPGLRSGFVAGDAEILKAFLRYRT-Y-HGCAMPIPTQLASIAAW 289 (393)
T ss_pred cCCcccceEEEecCHHHHHHHHHHHH-h-hccCcCHHHHHHHHHHh
Confidence 99999 999999999988776432 1 22334444444444444
No 197
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.99 E-value=2.5e-09 Score=109.94 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEecccccccc-CCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~ 348 (430)
+++|++++++. +.++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...+ +.....+.
T Consensus 153 ~~~l~~~~~~~----------~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~ 222 (391)
T PRK07309 153 PEMLEKAILEQ----------GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIA 222 (391)
T ss_pred HHHHHHHhhcc----------CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHH
Confidence 57777776542 113456666677999998876 88999999999999999999986655 22111222
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
+. .+ +..|+++||||+||++| ||+++++++++.+.... .+...+ .+++...++.+.|
T Consensus 223 ~~---~~-~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~-~~~~~~-~~~~~q~~~~~~l 282 (391)
T PRK07309 223 EY---LP-DQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSH-QYLVTA-ATTMAQFAAVEAL 282 (391)
T ss_pred Hh---cc-CCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHH-hhcccC-CChHHHHHHHHHH
Confidence 21 22 34699999999999999 99999999999888643 333332 3344333344444
No 198
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=98.98 E-value=1.7e-09 Score=109.99 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=68.4
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc--ee--cCCCCCCccEEEeCccchh
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT--EY--FGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~--e~--~g~~~~~~dIv~~TlSKa~ 369 (430)
+++|++.++.+|+|.+.+ +++|+++|++||++||+||+|+...+. +.... .. .+.. .+..|+++||||+|
T Consensus 149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~ 225 (364)
T PRK07865 149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWD--AEPVSILDPRVCGGD-HTGLLAVHSLSKQS 225 (364)
T ss_pred ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccC--CCCCccccccccCCc-cceEEEEeechhcc
Confidence 456667789999998876 788899999999999999999854442 22111 11 0111 23479999999999
Q ss_pred cccc---ceeecCHHHHHHHHhcC
Q psy2206 370 GSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 370 G~~G---G~v~gs~~li~~l~~~~ 390 (430)
|++| ||+++++++++.++...
T Consensus 226 ~~~GlRiG~i~~~~~~~~~~~~~~ 249 (364)
T PRK07865 226 NLAGYRAGFVAGDPALVAELLEVR 249 (364)
T ss_pred CCCceeeEEEecCHHHHHHHHHHH
Confidence 9888 99999999999887643
No 199
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=98.98 E-value=2.6e-09 Score=109.15 Aligned_cols=107 Identities=23% Similarity=0.312 Sum_probs=75.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
..+|++..+.+++|.+.+.+++.++++.+ +++||+||+|+.- +..|. ...+... .+..|+++||||++|++|
T Consensus 156 ~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~--~~~~~--~~~~~~~-~~~~i~~~SfSK~~g~~Gl 230 (369)
T PRK08153 156 APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCET--APAGA--APPIDTD-DPNVIRMRTFSKAYGLAGA 230 (369)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhh--cCccc--chhhhhc-CCCEEEEecchHhccCcch
Confidence 34555567899999999988887777654 8999999999743 22221 1111111 234689999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.+...... + +.+++..+++.++|+
T Consensus 231 RiG~~v~~~~~~~~l~~~~~~--~--~~s~~~q~~~~~~l~ 267 (369)
T PRK08153 231 RVGYAIGAPGTIKAFDKVRNH--F--GMNRIAQAAALAALK 267 (369)
T ss_pred heeeeecCHHHHHHHHHhhcC--C--CCCHHHHHHHHHHhc
Confidence 9999999999988875432 2 356666666666663
No 200
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.96 E-value=2.2e-09 Score=110.88 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=81.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.|++|.+.|+++|.++|+++|+++|+||+|..+.... .+. ..+||++.|++|.++.
T Consensus 137 ~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~---------pl~-~gaDivv~S~tK~l~G~~d~ 206 (386)
T PRK08045 137 KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQN---------PLA-LGADLVLHSCTKYLNGHSDV 206 (386)
T ss_pred CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC---------chh-hCCCEEEeecceeccCCCCc
Confidence 35688999999999999999999999999999999999997654311 111 2458999999999963
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++ ++++++.++.... ..+..++|..++.++.+|+.+
T Consensus 207 ~~G~vi~~~~~~~~~l~~~~~--~~g~~~~p~~~~l~~rgl~tl 248 (386)
T PRK08045 207 VAGVVIAKDPDVVTELAWWAN--NIGVTGGAFDSYLLLRGLRTL 248 (386)
T ss_pred eeEEEEeCcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhccH
Confidence 3576655 6888887764332 235568899888888887665
No 201
>PRK05968 hypothetical protein; Provisional
Probab=98.95 E-value=1.5e-09 Score=112.17 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=97.3
Q ss_pred HHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+..+|....-. ..+++|++++. ++++|++|++.++.+.+.|+++|.++|++||++||+|+
T Consensus 119 ~~~~~~~~G~~v~~vd~~d~~~l~~~i~--------------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~ 184 (389)
T PRK05968 119 FETILKRMGVEVDYVDGRDEEAVAKALP--------------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDN 184 (389)
T ss_pred HHHHHHHcCceEEEeCCCCHHHHHHhcc--------------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 344556666533211 12566665541 24578889999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILT 409 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaala 409 (430)
+|+.+++.. . +. ..+||++.|++|.++. .||++++++++++.++.....+ ....++|..++..+.
T Consensus 185 a~a~~~~~~---p------~~-~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~-~g~~~~~~~A~~~l~ 253 (389)
T PRK05968 185 SWASPVFQR---P------IT-LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPY-LGAKLSPFEAWLLLR 253 (389)
T ss_pred CCcchhccC---c------hh-cCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHh-CCCCCChHHHHHHHc
Confidence 998775432 1 11 2458999999999975 3689999999998877533222 345688888888888
Q ss_pred HHHHH
Q psy2206 410 SMRII 414 (430)
Q Consensus 410 aL~~l 414 (430)
+|+.+
T Consensus 254 ~L~tl 258 (389)
T PRK05968 254 GLRTL 258 (389)
T ss_pred ccCcH
Confidence 77665
No 202
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.95 E-value=1.6e-09 Score=111.55 Aligned_cols=134 Identities=18% Similarity=0.217 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+.++|....-.. .++++++++++ ++++|++|++.|++|.+.|+++|+++|++||+++|+|+
T Consensus 102 ~~~~~~~~G~~v~~vd~~d~~~le~~i~~-------------~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~ 168 (378)
T TIGR01329 102 LTQVVPRSGVVVVHVDTTDLDKVKAALGP-------------KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDN 168 (378)
T ss_pred HHHHHHHcCcEEEEeCCCCHHHHHHhcCc-------------CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEEC
Confidence 3445556665432222 25666666542 46799999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQIL 408 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaal 408 (430)
+|+.+.... . +. ..+||++.|++|.++. .||++++ ++++.+.++.... ..+..++|..++.++
T Consensus 169 a~~~~~~~~---~------l~-~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~--~~G~~~~~~~a~l~~ 236 (378)
T TIGR01329 169 TMMSPLLCN---P------LE-LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN--STGSGLAPFDCWLLL 236 (378)
T ss_pred CCcccccCC---h------hh-cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH--hcCCcCCHHHHHHHH
Confidence 997654211 1 11 2458999999999864 3788866 5666566654321 135567787777655
Q ss_pred HHHHHH
Q psy2206 409 TSMRII 414 (430)
Q Consensus 409 aaL~~l 414 (430)
..++.+
T Consensus 237 ~~l~tl 242 (378)
T TIGR01329 237 RGIKTL 242 (378)
T ss_pred ccCCCH
Confidence 554433
No 203
>PLN02187 rooty/superroot1
Probab=98.94 E-value=2.5e-09 Score=112.92 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=73.7
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|...+++..- ..+... ......|+++||||+|+++
T Consensus 205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~---~~~~~vi~l~SfSK~f~~p 281 (462)
T PLN02187 205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKF---ASIVPVLTLAGISKGWVVP 281 (462)
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHh---ccCCcEEEEecchhhcCCc
Confidence 456666677899999987 889999999999999999999876664311 111111 1112368999999999999
Q ss_pred c---ceeecC-H-H---HHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGS-K-S---TIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs-~-~---li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||++++ + . +++.+......+..+++.+.+..+++.++|+
T Consensus 282 GlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~ 329 (462)
T PLN02187 282 GWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILE 329 (462)
T ss_pred cceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHh
Confidence 9 999873 3 2 3344444332322333334454455555553
No 204
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.94 E-value=8.9e-09 Score=106.77 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=58.4
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++.|++..+.+++|.+.+ +.+|+++|++|+++||+||+|..-+++..-......+ ...+..|+++||||.|+++|
T Consensus 171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~--~~~~~vi~~~SfSK~f~~pG 248 (409)
T PLN00143 171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLF--ASIVPVITLGSISKRWMIPG 248 (409)
T ss_pred CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhh--cccCcEEEEccchhhcCCCc
Confidence 345555567999999998 7888888999999999999998655532100111111 11234689999999999999
Q ss_pred ---ceeec
Q psy2206 374 ---GYVAG 378 (430)
Q Consensus 374 ---G~v~g 378 (430)
||+++
T Consensus 249 lRvG~~v~ 256 (409)
T PLN00143 249 WGLGWLVT 256 (409)
T ss_pred cceEEEEe
Confidence 99988
No 205
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.94 E-value=3.6e-09 Score=107.48 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=68.9
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcccee--cCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY--FGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~--~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++.++.+|+|.+.+ +++|+++|++||+++|+||+|..-.++......... .+.. .+..|+++||||+||
T Consensus 142 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~ 220 (357)
T TIGR03539 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGD-HTGLLAVHSLSKRSN 220 (357)
T ss_pred CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCc-cccEEEEeccccccC
Confidence 3567778899999999887 777999999999999999999643333211111110 1111 134699999999998
Q ss_pred ccc---ceeecCHHHHHHHHhcC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~ 390 (430)
++| ||+++++++++.++...
T Consensus 221 ~~G~R~G~~i~~~~~~~~~~~~~ 243 (357)
T TIGR03539 221 LAGYRAGFVAGDPALVAELLTVR 243 (357)
T ss_pred CCceeEEEEecCHHHHHHHHHHH
Confidence 887 99999999999887644
No 206
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.94 E-value=3.8e-09 Score=106.21 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=67.2
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+ +.+|+++|++||+++|+||+|...+.. ..+....+ ..+.+|+++||||+||++|
T Consensus 128 ~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~---~~~~~~~~--~~~~~i~~~S~SK~~g~~G~R 202 (330)
T TIGR01140 128 VLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD---ASLAPQAA--RFPGLVVLRSLTKFFGLAGLR 202 (330)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc---cchhhHhc--cCCCEEEEEecchhhcCchhh
Confidence 5666777999999999 777888889999999999999744332 12211111 1245799999999999888
Q ss_pred -ceeecCHHHHHHHHhcC
Q psy2206 374 -GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 203 ~G~i~~~~~~~~~l~~~~ 220 (330)
T TIGR01140 203 LGFVVAHPALLARLREAL 220 (330)
T ss_pred hhheeCCHHHHHHHHhcC
Confidence 99999999999988754
No 207
>PRK07550 hypothetical protein; Provisional
Probab=98.93 E-value=3.8e-09 Score=108.16 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++++++ ++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+....+. +... .
T Consensus 153 ~~~l~~~~~~-------------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~-~~~~-~ 217 (386)
T PRK07550 153 PAAAEALITP-------------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGG-GAPH-D 217 (386)
T ss_pred HHHHHHHhcc-------------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCC-CCCc-c
Confidence 5667777654 1234444567899999887 8899999999999999999997543221 1111 1
Q ss_pred ecCC-CCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 350 YFGI-DPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g~-~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
.+.. ...+..|++.||||++|++| ||+++++++++.+....
T Consensus 218 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~ 262 (386)
T PRK07550 218 LFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFM 262 (386)
T ss_pred hhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHH
Confidence 1111 11234688999999999887 99999999998887644
No 208
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.92 E-value=2e-09 Score=111.59 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=97.6
Q ss_pred HHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
+.+.+.++|....-- ...+.|++++++ ++++|++|++.|+.+.+.||++|+++|+++|+++++|+
T Consensus 120 ~~~~l~~~Gi~v~~vd~~~~e~l~~al~~-------------~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~ 186 (395)
T PRK05967 120 CDTMLKRLGVEVEYYDPEIGAGIAKLMRP-------------NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDN 186 (395)
T ss_pred HHHHHHhcCeEEEEeCCCCHHHHHHhcCc-------------CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEEC
Confidence 445566677633211 113456665543 46799999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILT 409 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaala 409 (430)
+++.+++- ..+. ..+||++.|++|.++. .||++++++++.+.++.... ..+..++|..|+.++.
T Consensus 187 t~a~p~~~---------~pl~-~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~--~~G~~~~p~da~l~~r 254 (395)
T PRK05967 187 TWATPLYF---------RPLD-FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG--TLGLCAGPDDTYQILR 254 (395)
T ss_pred CccCceec---------ChhH-cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHc
Confidence 99766432 1222 3569999999999863 45888888887666653222 2467799999999988
Q ss_pred HHHHH
Q psy2206 410 SMRII 414 (430)
Q Consensus 410 aL~~l 414 (430)
.|+.+
T Consensus 255 gl~Tl 259 (395)
T PRK05967 255 GLRTM 259 (395)
T ss_pred CcccH
Confidence 87766
No 209
>PRK08636 aspartate aminotransferase; Provisional
Probab=98.92 E-value=6.1e-09 Score=107.55 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=69.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~ 371 (430)
+..+|++..+.+++|.+.+ +.+|+++|++|+++||+||+|+...++. ........+.. .+..|.++||||+||+
T Consensus 175 ~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 175 KPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG--YKTPSILEVEGAKDVAVESYTLSKSYNM 252 (403)
T ss_pred CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC--CCCCChhcCCCccccEEEEEecccccCC
Confidence 3557777788999999988 7888888999999999999998655542 11111111211 1345778999999999
Q ss_pred cc---ceeecCHHHHHHHHhc
Q psy2206 372 MG---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~ 389 (430)
+| ||+++++++++.+...
T Consensus 253 ~GlRiG~iv~~~~li~~~~~~ 273 (403)
T PRK08636 253 AGWRVGFVVGNKKLVGALKKI 273 (403)
T ss_pred ccceeeeeeCCHHHHHHHHHH
Confidence 99 9999999999988764
No 210
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.91 E-value=4.9e-09 Score=108.98 Aligned_cols=107 Identities=19% Similarity=0.152 Sum_probs=80.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|+++++.+++|.+.++++|+++|++||++||+||+|..+..- ..+. ..+||++.|++|.++..
T Consensus 145 ~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~---------~pl~-~gaDivv~S~tK~l~g~~~~ 214 (405)
T PRK08776 145 SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQ---------KPLE-FGADLVLHSTTKYINGHSDV 214 (405)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccC---------Cccc-ccCCEEEecCceeecCCCCc
Confidence 3568899999999999999999999999999999999999764321 1111 24589999999999743
Q ss_pred -cceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++ ++++.+.++..... .+..++|..+++++..++.+
T Consensus 215 ~~G~vv~~~~~l~~~l~~~~~~--~g~~~s~~~a~l~~~gl~tl 256 (405)
T PRK08776 215 VGGAVVARDAELHQQLVWWANA--LGLTGSPFDAFLTLRGLRTL 256 (405)
T ss_pred eEEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhCcH
Confidence 577655 67787766543221 23347889888888777666
No 211
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=98.91 E-value=6.1e-09 Score=105.54 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++++++.++.. ++++|++.++.+++|.+.+.+++.+++++++.++|+||+|.. +.+. .......
T Consensus 137 ~~~l~~~~~~~------------~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~-~~~~---~~~~~~~ 200 (351)
T PRK14807 137 VGSFIKVIEKY------------QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFE-FYGN---TIVDVIN 200 (351)
T ss_pred HHHHHHHhhcc------------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchh-hccc---chHHHhh
Confidence 56677666431 244566668999999999999999999998999999999953 3332 1111111
Q ss_pred CCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 353 IDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
..+..|+++||||++|++| ||+++++++++.++...
T Consensus 201 --~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~ 239 (351)
T PRK14807 201 --EFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVK 239 (351)
T ss_pred --hCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHcc
Confidence 1234799999999999999 99999999999988754
No 212
>PRK06107 aspartate aminotransferase; Provisional
Probab=98.91 E-value=5.4e-09 Score=107.94 Aligned_cols=111 Identities=12% Similarity=0.156 Sum_probs=75.1
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhc-CcEEEEeccccccccCCCC-Ccccee-cCCCCCCccEEEeCccchhc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKY-KAYLYVDEAHSIGALGPTG-RGVTEY-FGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y-~~~LivDEAh~~G~lG~~G-rG~~e~-~g~~~~~~dIv~~TlSKa~G 370 (430)
+++|++.++.+++|.+.+ +++|+++|++| ++++|+||+|+...+.... ..+... .+. .+..|+++||||.||
T Consensus 167 ~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~~ 244 (402)
T PRK06107 167 TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL--RDRVLVTNGVSKTYA 244 (402)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCc--cCCEEEEeccchhhc
Confidence 345566678999998886 67888889998 9999999999854453211 111111 111 235799999999999
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
++| ||+++++++++.+...... . +...+.+..+++..+|
T Consensus 245 ~pGlRiG~~~~~~~~~~~~~~~~~~-~-~~~~s~~~q~~~~~~l 286 (402)
T PRK06107 245 MTGWRIGYAAGPADLIAAINKLQSQ-S-SSCPSSISQAAAAAAL 286 (402)
T ss_pred CcccceeeeecCHHHHHHHHHHHHh-c-ccCCChHHHHHHHHHh
Confidence 899 9999999999988874322 1 2223444444444444
No 213
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.91 E-value=3.5e-09 Score=109.03 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+.++|....- ...+++|++++++ ++++|++|.+.+++|.+.|+++|+++|+++|+++|+||
T Consensus 105 ~~~~~~~~G~~v~~v~~~d~~~l~~ai~~-------------~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~ 171 (377)
T PRK07671 105 MTKVLNRFGIEHTFVDTSNLEEVEEAIRP-------------NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDN 171 (377)
T ss_pred HHHHHhcCCeEEEEECCCCHHHHHHhcCC-------------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 34445556653221 1125566665532 45689999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQIL 408 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaal 408 (430)
+|+.+.++. . +. ..+||++.|++|.+|. .||+++. ++++++.++.... ..+..++|..++.++
T Consensus 172 a~~~~~~~~-------p--~~-~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~--~~g~~~~~~~a~l~~ 239 (377)
T PRK07671 172 TFMTPYWQS-------P--IS-LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN--STGGILGPQDSWLLL 239 (377)
T ss_pred CCCccccCC-------h--hh-hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH--hhcCCCCHHHHHHHH
Confidence 997654431 1 11 2458999999999974 4576554 6778877765332 235668888888777
Q ss_pred HHHHHH
Q psy2206 409 TSMRII 414 (430)
Q Consensus 409 aaL~~l 414 (430)
..++.+
T Consensus 240 ~~l~tl 245 (377)
T PRK07671 240 RGLKTL 245 (377)
T ss_pred cCcChH
Confidence 766554
No 214
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.90 E-value=2.3e-09 Score=112.41 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=57.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|++|++.||+|.+.|+++|.++|++||++||||++|+.+.+.. .+. ..+||++.|++|.+|..|
T Consensus 155 ~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~---------pl~-~GaDivv~S~tK~lgg~G 222 (436)
T PRK07812 155 NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIR---------PLE-HGADIVVHSATKYLGGHG 222 (436)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC---------chh-cCCCEEEEecccccCCCC
Confidence 46799999999999999999999999999999999999998765421 122 356999999999998655
No 215
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.90 E-value=4.2e-09 Score=106.86 Aligned_cols=130 Identities=16% Similarity=0.248 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++ ++++|++..+.+++|.+.|+++|.++|++||+++|+|++|++|... ++
T Consensus 127 ~~~l~~~~~~-------------~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~---------~~ 184 (376)
T TIGR01977 127 PERIKRAIKT-------------NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIP---------ID 184 (376)
T ss_pred HHHHHHhcCC-------------CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccC---------CC
Confidence 5667766532 3567888899999999999999999999999999999999987642 12
Q ss_pred CCCCCccEEEeCccchhccc-c-ce-eecCHHHHHHHHhcC---------------CcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSM-G-GY-VAGSKSTIDYIRANS---------------HVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~-G-G~-v~gs~~li~~l~~~~---------------~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+....+|+++.|++|.++.+ | |+ ++.+...+..+.... ..+. ..+.+...+++..++++.+
T Consensus 185 ~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~t~~~~~~~a~~~al~~~ 263 (376)
T TIGR01977 185 MTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFE-SGTLNTPGIAGLNAGIKFI 263 (376)
T ss_pred chhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhcc-CCCCCHHHHHHHHHHHHHH
Confidence 22235799999999998643 3 34 444433222111100 0011 1234555666777889888
Q ss_pred HccCCchHHHhh
Q psy2206 415 MGLENGDEGNVR 426 (430)
Q Consensus 415 ~~~~~~~~~~~r 426 (430)
.+. +.+..+++
T Consensus 264 ~~~-g~~~~~~~ 274 (376)
T TIGR01977 264 EKI-GIANIAKK 274 (376)
T ss_pred HHh-CHHHHHHH
Confidence 655 43444444
No 216
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=98.89 E-value=9e-09 Score=103.59 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=64.1
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+ +.+|+++|++++++||+||+|.... + ...+.. +.+.+..|+++||||+||++|
T Consensus 127 ~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~--~-~~s~~~---~~~~~~vi~~~SfSK~~gl~GlR 200 (330)
T PRK05664 127 VLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT--P-QHSLAA---CAHRPGLIVLRSFGKFFGLAGAR 200 (330)
T ss_pred EEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC--C-cccccc---cccCCCEEEEeeccccccCCCcc
Confidence 4444566899999998 5666666789999999999985321 1 111111 222234699999999999999
Q ss_pred -ceeecCHHHHHHHHhcCC
Q psy2206 374 -GYVAGSKSTIDYIRANSH 391 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~ 391 (430)
||+++++++++.+.....
T Consensus 201 iG~~v~~~~l~~~~~~~~~ 219 (330)
T PRK05664 201 LGFVLAEPALLRALAELLG 219 (330)
T ss_pred eEEEEeCHHHHHHHHHhcC
Confidence 999999999999887543
No 217
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.89 E-value=4.5e-09 Score=109.89 Aligned_cols=118 Identities=24% Similarity=0.360 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|++|++.+++|.+.|+++|+++|++||++||+||+|+.+++.. .
T Consensus 133 ~e~le~ai~~-------------~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~-------p-- 190 (425)
T PRK06084 133 IAALEALIDE-------------RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCR-------P-- 190 (425)
T ss_pred HHHHHHHhcc-------------CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-------h--
Confidence 5677777653 35688889999999999999999999999999999999998765421 1
Q ss_pred CCCCCccEEEeCccchhcc----ccceeecCHHHH--H----------------------------HH---HhcCCcccc
Q psy2206 353 IDPREVDILMGTYTKSFGS----MGGYVAGSKSTI--D----------------------------YI---RANSHVRSY 395 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li--~----------------------------~l---~~~~~~~~~ 395 (430)
+. ..+||++.|++|.+|. .||+++.+..+. + .+ +... ...+
T Consensus 191 ~~-~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 268 (425)
T PRK06084 191 FE-HGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVP-LRNM 268 (425)
T ss_pred hh-cCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHH-HHhc
Confidence 11 2468999999999974 357777533210 0 00 0000 1124
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q psy2206 396 ATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 396 s~s~~P~~~aaalaaL~~l 414 (430)
...++|..++.++..|+.+
T Consensus 269 g~~l~~~~a~l~lrgl~tl 287 (425)
T PRK06084 269 GAALSPFNAFLILQGLETL 287 (425)
T ss_pred CCCCCHHHHHHHHcCcCcH
Confidence 6778999999888877666
No 218
>PRK06855 aminotransferase; Validated
Probab=98.89 E-value=4.9e-09 Score=109.59 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++++.. + +++++++.++.+++|.+.+ +.+|+++|++||++||.||+|+.-.+.. .-...
T Consensus 159 ~~~l~~~~~~~----------~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~s 225 (433)
T PRK06855 159 LDDLENKVKYN----------P-SIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG--KKTVP 225 (433)
T ss_pred HHHHHHHHhcC----------C-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCCC
Confidence 67788777531 0 2344555578999999998 7778888999999999999998655532 11111
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeec
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAG 378 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~g 378 (430)
...+.++...|+++||||+|+++| ||+++
T Consensus 226 l~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~ 257 (433)
T PRK06855 226 LSEVIGDVPGIALKGISKELPWPGSRCGWIEV 257 (433)
T ss_pred HHHHcCcCCeEEEecCccccCCCcceEEEEEE
Confidence 111222223599999999999998 99986
No 219
>PLN02721 threonine aldolase
Probab=98.88 E-value=7.4e-09 Score=103.90 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|++.+++....+ ..++++|++++++++ +|.+.| +++|.++|++||++|++||+|..+.....+....
T Consensus 120 ~~~l~~~i~~~~~~~------~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~ 193 (353)
T PLN02721 120 LDAIEAAIRPKGDDH------FPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVH 193 (353)
T ss_pred HHHHHHHHHhccCCC------CCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHH
Confidence 677888776421000 014568888887654 677766 7899999999999999999997553221121111
Q ss_pred eecCCCCCCccEEEeCccchhccccc-eeecCHHHHHHHHh
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMGG-YVAGSKSTIDYIRA 388 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~GG-~v~gs~~li~~l~~ 388 (430)
... ..+|.++.|+||+++.+.| ++++++++++.+..
T Consensus 194 ---~~~-~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~ 230 (353)
T PLN02721 194 ---RLV-KAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKR 230 (353)
T ss_pred ---HHh-hhCCEEEEecccccCCceeeEEecCHHHHHhHHH
Confidence 111 2457788899999987544 57789999887655
No 220
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.88 E-value=8.2e-09 Score=106.35 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=65.1
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+.+|++..+.+++|.+.+ +++|+++|++||++||+||+|..-.+. +........+.+....|+++||||+|+++|
T Consensus 169 ~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 246 (401)
T TIGR01264 169 TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFS--GATFEPLASLSSTVPILSCGGLAKRWLVPG 246 (401)
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccC--CcccccHHHcCCCCcEEEEccCcccCCCcc
Confidence 346677888999999876 888999999999999999999754443 221111112222223689999999999999
Q ss_pred ---ceeecCH------HHHHHHHh
Q psy2206 374 ---GYVAGSK------STIDYIRA 388 (430)
Q Consensus 374 ---G~v~gs~------~li~~l~~ 388 (430)
||+++++ ++++.++.
T Consensus 247 lRiG~iv~~~~~~~~~~~~~~~~~ 270 (401)
T TIGR01264 247 WRLGWIIIHDRRGILRDIRDGLVK 270 (401)
T ss_pred ceEEEEEecCcchhHHHHHHHHHH
Confidence 9999863 45555554
No 221
>PRK05839 hypothetical protein; Provisional
Probab=98.88 E-value=8.5e-09 Score=105.53 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=66.9
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceec---CCCCCCccEEEeCccchhcc
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF---GIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~---g~~~~~~dIv~~TlSKa~G~ 371 (430)
++|++..+.+++|.+.+ +.+|+++|++||++||+||+|..-..+.....+.... +....+..|+++||||+||+
T Consensus 157 k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 236 (374)
T PRK05839 157 DLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSA 236 (374)
T ss_pred cEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCC
Confidence 45566699999999987 7788888999999999999997532221111111110 01111356999999999999
Q ss_pred cc---ceeecCHHHHHHHHhcC
Q psy2206 372 MG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~ 390 (430)
+| ||+++++++++.++...
T Consensus 237 ~GlRiG~ii~~~~~~~~~~~~~ 258 (374)
T PRK05839 237 PGLRSGFIAGDASILKKYKAYR 258 (374)
T ss_pred ccceeEEEecCHHHHHHHHHHH
Confidence 99 99999999999887643
No 222
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.88 E-value=7.5e-09 Score=108.22 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|...+++.. ...+.. ++ .....|+++||||.|+++
T Consensus 191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~-~~--~~~~vi~~~S~SK~~~~p 267 (430)
T PLN00145 191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGV-FG--EVAPVLTLGSISKRWVVP 267 (430)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhh-hc--ccCcEEEEeccccccCCC
Confidence 456677777899999998 88999999999999999999986666431 111111 11 123479999999999999
Q ss_pred c---ceeec--CHHHH
Q psy2206 373 G---GYVAG--SKSTI 383 (430)
Q Consensus 373 G---G~v~g--s~~li 383 (430)
| ||+++ ++.++
T Consensus 268 G~RlG~iv~~~~~~~~ 283 (430)
T PLN00145 268 GWRLGWIATCDPNGIL 283 (430)
T ss_pred CeeEEEEEEecchhhh
Confidence 9 99986 44443
No 223
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=98.88 E-value=8e-09 Score=106.09 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=75.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++.++.+++|.+.+.+++.++++.. ++||+||+|..... .+.. .... ...+..|+++||||+||++|
T Consensus 176 ~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~--~~~~-~~~~--~~~~~viv~~SfSK~~glaGlRi 249 (380)
T PLN03026 176 PKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFST--QESR-MKWV--KKYDNLIVLRTFSKRAGLAGLRV 249 (380)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcC--Ccch-HHHH--HhCCCEEEEecchHhhcCccccc
Confidence 45777778999999999999999999865 89999999964322 1111 1111 11234799999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+......+ + .+.+...++.++|
T Consensus 250 Gy~~~~~~~i~~l~~~~~~~--~--~~~~~q~aa~~aL 283 (380)
T PLN03026 250 GYGAFPLSIIEYLWRAKQPY--N--VSVAAEVAACAAL 283 (380)
T ss_pred eeeecCHHHHHHHHHhcCCC--C--CCHHHHHHHHHHh
Confidence 99999999999988755332 2 3334444455555
No 224
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=98.88 E-value=6.5e-09 Score=104.62 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=67.3
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+|++.++.+++|.+.+ +.+|+++|++|+++||+||+|..-.++ +. ....... ..+..|+++||||++|++|
T Consensus 125 ~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~--~~~~~~~~~~--~~~~vi~~~SfSK~~~l~Gl 200 (332)
T PRK06425 125 LIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPN--RAEEDVLLNR--SYGNVIIGRSLTKILGIPSL 200 (332)
T ss_pred EEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccc--cchhHHHHhc--cCCCEEEEeecHHhcCCchh
Confidence 5555599999999988 677788889999999999999754332 21 1111111 1234799999999999999
Q ss_pred --ceeecCHHHHHHHHhcCC
Q psy2206 374 --GYVAGSKSTIDYIRANSH 391 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~ 391 (430)
||+++++++++.+.....
T Consensus 201 RiGy~v~~~~li~~l~~~~~ 220 (332)
T PRK06425 201 RIGYIATDDYNMKISRKITE 220 (332)
T ss_pred hheeeecCHHHHHHHHHcCC
Confidence 999999999999887543
No 225
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.87 E-value=4.4e-09 Score=108.59 Aligned_cols=112 Identities=20% Similarity=0.267 Sum_probs=77.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|++..+.+++|.+.|+++|.++|++||+++++|++|++|... ..+....+|+++.|.+|.+|..| |
T Consensus 142 ~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~G 212 (402)
T TIGR02006 142 DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIP---------INVNELKVDLMSISGHKIYGPKGIG 212 (402)
T ss_pred CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcc---------cCccccCCCEEEEehhhhcCCCceE
Confidence 3568889999999999999999999999999999999999876532 11221346899999999888655 6
Q ss_pred eeecCHHHHHHHHhcCCc-----ccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 375 YVAGSKSTIDYIRANSHV-----RSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~~-----~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++..+++....+...... .....+.+...+++..++++.+++
T Consensus 213 ~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~ 259 (402)
T TIGR02006 213 ALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE 259 (402)
T ss_pred EEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHH
Confidence 666555433222211100 112344566666666788888754
No 226
>PLN02656 tyrosine transaminase
Probab=98.87 E-value=7.8e-09 Score=107.14 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=74.7
Q ss_pred eEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+. ++++|+++|++|+++||+||+|+.-++.. .-......+......|+++||||+|+++|
T Consensus 170 ~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~f~~pG 247 (409)
T PLN02656 170 TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS--NPFVPMGVFGSIVPVLTLGSLSKRWIVPG 247 (409)
T ss_pred ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC--CCcccHHHhcccCcEEEEcccchhccCcc
Confidence 44566667799999986 48999999999999999999998655542 11111111112234789999999999999
Q ss_pred ---ceeecC--------HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 ---GYVAGS--------KSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 ---G~v~gs--------~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||++++ +++++.+...... +. +.+++..+++.++|+
T Consensus 248 lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~--~~-~~s~~~q~a~~~~l~ 294 (409)
T PLN02656 248 WRLGWFVTTDPSGSFRDPKIVERIKKYFDI--LG-GPATFIQAAVPTILE 294 (409)
T ss_pred eeEEEEEEeCcccccccHHHHHHHHHHHhh--hc-CCCHHHHHHHHHHHh
Confidence 999983 6888888764322 22 234444444445553
No 227
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=98.86 E-value=5.9e-09 Score=106.67 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=71.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+..+|++.++.+++|...+.++|.++++.- +.+|||||||.- |.+ ........ . ..-.|++.||||+||++|
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~e--F~~--~~~~~l~~-~-~~nlivlRTfSKa~gLAG 218 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIE--FSP--ESSLELLK-Y-PPNLIVLRTFSKAFGLAG 218 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhh--cCC--chhhhhcc-C-CCCEEEEEecHHhhhcch
Confidence 356899999999999999988888888754 789999999853 222 11112111 1 122589999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcc
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVR 393 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~ 393 (430)
||+++++++++.++....+|
T Consensus 219 lRlGy~ia~~~~i~~l~~vr~p~ 241 (356)
T COG0079 219 LRVGYAIANPELIAALNKVRPPF 241 (356)
T ss_pred hceeeccCCHHHHHHHHHhcCCC
Confidence 99999999999999977665
No 228
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=98.86 E-value=9.4e-09 Score=106.01 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=100.5
Q ss_pred HHHHHHHHHhCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALC--SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~--~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
.-+.+.+.+||+.+. .+...+.+++.+.+ .++.+|.+|++-||...+.|+++|+++|+++|+++||
T Consensus 117 ~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~------------~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvV 184 (396)
T COG0626 117 RLFEKILQKFGVEVTFVDPGDDEALEAAIKE------------PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVV 184 (396)
T ss_pred HHHHHHHHhcCeEEEEECCCChHHHHHHhcc------------cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEE
Confidence 445556667887554 22223444444432 1578999999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCH-HHHHHHHhcCCcccccCCCcHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aa 406 (430)
|++.+.+++- .++. ..+||++.|.+|.++ ..||+++++. ++.+.+....+. .+++.++|..++.
T Consensus 185 DNTfatP~~q---------~PL~-~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~-~~G~~l~p~dA~l 253 (396)
T COG0626 185 DNTFATPVLQ---------RPLE-LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRA-NTGAVLSPFDAWL 253 (396)
T ss_pred ECCccccccc---------Chhh-cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHh-hcCCCCCHHHHHH
Confidence 9999887652 2232 357999999999997 4668887654 555555332222 2577899999999
Q ss_pred HHHHHHHH
Q psy2206 407 ILTSMRII 414 (430)
Q Consensus 407 alaaL~~l 414 (430)
.+..|+.+
T Consensus 254 ~lRGlkTL 261 (396)
T COG0626 254 LLRGLRTL 261 (396)
T ss_pred HHhccchH
Confidence 99988776
No 229
>PLN02368 alanine transaminase
Probab=98.86 E-value=1.6e-08 Score=105.17 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC--Ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG--RGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G--rG~ 347 (430)
+++|++.+++.... ..++++|++..+.+++|.+.+ +.+|+++|++||++||.||+|+..+++... ..+
T Consensus 194 ~~~le~~i~~~~~~-------~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~ 266 (407)
T PLN02368 194 VNNLRQSVAQARSK-------GITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISA 266 (407)
T ss_pred HHHHHHHHHHHhhc-------CCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccH
Confidence 57777777642100 013566677777999999987 778888899999999999999877664321 111
Q ss_pred ceec-CCC----CCCccEEEeCccchh-cccc---ceee---cCHHHHHHHHhc
Q psy2206 348 TEYF-GID----PREVDILMGTYTKSF-GSMG---GYVA---GSKSTIDYIRAN 389 (430)
Q Consensus 348 ~e~~-g~~----~~~~dIv~~TlSKa~-G~~G---G~v~---gs~~li~~l~~~ 389 (430)
.+.. .+. .....|+++||||+| |++| ||++ +++++++.+...
T Consensus 267 ~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~ 320 (407)
T PLN02368 267 KKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKV 320 (407)
T ss_pred HHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHH
Confidence 1110 111 122579999999998 8999 9998 588999988875
No 230
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.86 E-value=3.7e-09 Score=109.44 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=79.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.++.|.+.++++|+++|++||++|++||+|+.+++- .++. ..+||++.|++|.++.
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~---------~~l~-~GaDi~v~S~tK~~~g~~~~ 219 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAF---------KPFE-HGVDISVQALTKYQSGGSDV 219 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccccc---------CHHH-cCCeEEEEECCceecCCCCe
Confidence 4678999999999999999999999999999999999999887542 1122 2458999999999853
Q ss_pred ccce-eecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MGGY-VAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~GG~-v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+||+ +.+++++++.++.... . .+..++|..+..++..|+.
T Consensus 220 ~gG~v~~~~~~~~~~~~~~~~-~-~G~~~~~~~a~l~lr~l~t 260 (394)
T PRK07050 220 LMGATITADAELHAKLKLARM-R-LGIGVSADDCSLVLRGLPS 260 (394)
T ss_pred eEEEEEECCHHHHHHHHHHHH-h-cCCCCCHHHHHHHHcCCCc
Confidence 4565 4457888887765332 2 3556788877766554433
No 231
>PRK09275 aspartate aminotransferase; Provisional
Probab=98.86 E-value=7.7e-09 Score=110.69 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=59.7
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+++|++.++.+|+|.+.+ +++|+++|++ ++++||+||+|+.-+. ....+... .+ +..|++.||||+||+
T Consensus 242 tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~~~~---~~-~~~I~v~SfSK~f~m 315 (527)
T PRK09275 242 IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSLFAV---LP-YNTILVYSFSKYFGA 315 (527)
T ss_pred CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCHHHh---CC-CCEEEEeehhhhccC
Confidence 446666688999999998 8888888954 5999999999986332 11222221 12 457999999999999
Q ss_pred cc---ceeecCHH
Q psy2206 372 MG---GYVAGSKS 381 (430)
Q Consensus 372 ~G---G~v~gs~~ 381 (430)
+| ||++++++
T Consensus 316 tG~RlG~i~~~~~ 328 (527)
T PRK09275 316 TGWRLGVIALHED 328 (527)
T ss_pred cHhHHhhhhcCch
Confidence 99 99999886
No 232
>PRK07337 aminotransferase; Validated
Probab=98.85 E-value=1.2e-08 Score=104.73 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=66.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|..-.+....... .... +..|+++||||.||++|
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~---~~~~--~~vi~~~S~SK~~~~~G 238 (388)
T PRK07337 164 TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA---LSLG--DDVITINSFSKYFNMTG 238 (388)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh---hhcc--CCEEEEEechhhcCCch
Confidence 456777788999999886 788889999999999999999743332211111 1121 23577899999999988
Q ss_pred ---ceeecCHHHHHHHHhcC
Q psy2206 374 ---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 239 ~RiG~~~~~~~l~~~l~~~~ 258 (388)
T PRK07337 239 WRLGWLVVPEALVGTFEKLA 258 (388)
T ss_pred hheeeeecCHHHHHHHHHHH
Confidence 99999999998887644
No 233
>PRK05939 hypothetical protein; Provisional
Probab=98.84 E-value=6.1e-09 Score=107.99 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=75.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++++|++|++.|++|.+.|+++|+++|++||+++|+|++|+.+.. +.....++||+++|+||.++..|
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~----------~~~~~~gaDivv~S~sK~~~g~g~~ 200 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL----------FRPKDVGASLVINSLSKYIAGHGNA 200 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc----------cCccccCCEEEEecCeecccCCCCe
Confidence 467899999999999999999999999999999999999876531 11111256999999999998655
Q ss_pred --ceeecCHH--------H-------------HHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKS--------T-------------IDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 374 --G~v~gs~~--------l-------------i~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
|+++.+.. + +..++... ...+.+.++|..++.++..++.+
T Consensus 201 igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~p~~a~l~~rgl~tl 263 (397)
T PRK05939 201 LGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKG-LRDMGATLSSEAAHRIAIGAETL 263 (397)
T ss_pred EEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHH-HHhcCCCCCHHHHHHHHcCcCcH
Confidence 44442221 1 11122111 01246678899888887776655
No 234
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.84 E-value=1e-08 Score=104.86 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=60.7
Q ss_pred ceEEEEEcCccCCCCcccCH-HHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRL-PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS--- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L-~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~--- 371 (430)
++++|+++.+ +++|.+.|+ ++|+++|++||++||+|++|+.+. +. +-... .++|++++|++|.++.
T Consensus 159 ~t~~viv~~~-~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~-~~---~~~~~-----~~~d~~~~s~~K~~~p~g~ 228 (398)
T cd00613 159 EVAALMVQYP-NTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT-GL---KPPGE-----YGADIVVGNLQKTGVPHGG 228 (398)
T ss_pred CeEEEEEECC-CCCceecchHHHHHHHHHhcCCEEEEEecccccc-CC---CChHH-----cCCCEEEeeccccCCCCCC
Confidence 3567777777 478999885 999999999999999999997543 11 11111 2468999999999821
Q ss_pred ---ccceeecCHHHHHHH
Q psy2206 372 ---MGGYVAGSKSTIDYI 386 (430)
Q Consensus 372 ---~GG~v~gs~~li~~l 386 (430)
.+|+++.++++++.+
T Consensus 229 Ggp~~g~l~~~~~~~~~~ 246 (398)
T cd00613 229 GGPGAGFFAVKKELVRFL 246 (398)
T ss_pred CCCceeEEEEhhhhHhhC
Confidence 247888888888764
No 235
>PRK07568 aspartate aminotransferase; Provisional
Probab=98.84 E-value=1.5e-08 Score=103.88 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=65.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|+...+...- ..+....+. .+..|+++||||.||++
T Consensus 163 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~~~~ 240 (397)
T PRK07568 163 TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGL--EDRVIIIDSVSKRYSAC 240 (397)
T ss_pred ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCC--cCCEEEEecchhhccCC
Confidence 446677778899999886 788999999999999999999754442211 111221111 23468999999999988
Q ss_pred c---ceeec-CHHHHHHHHhc
Q psy2206 373 G---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 373 G---G~v~g-s~~li~~l~~~ 389 (430)
| ||+++ ++++++.+...
T Consensus 241 G~R~G~~~~~~~~~~~~~~~~ 261 (397)
T PRK07568 241 GARIGCLISKNKELIAAAMKL 261 (397)
T ss_pred CcceEEEecCCHHHHHHHHHH
Confidence 7 99887 47888876553
No 236
>PLN02409 serine--glyoxylate aminotransaminase
Probab=98.84 E-value=2.5e-08 Score=103.26 Aligned_cols=137 Identities=20% Similarity=0.235 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHH--HHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRL--KNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~L--a~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++.|++. + ..++++|++..+.+.+|.+.|+++|.++ |++||+++++|++|+.|.+ .
T Consensus 123 ~~~l~~~l~~~-------~--~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~---------~ 184 (401)
T PLN02409 123 LDILKSKLRQD-------T--NHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGAL---------D 184 (401)
T ss_pred HHHHHHHHhhC-------c--CCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCc---------c
Confidence 67888887641 0 0135677777888889999999999999 9999999999999986532 1
Q ss_pred cCCCCCCccEEEeCccchhcc-cc-ceeecCHHHHHHHHhcCC-cccc---------------cCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGS-MG-GYVAGSKSTIDYIRANSH-VRSY---------------ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~~li~~l~~~~~-~~~~---------------s~s~~P~~~aaalaaL~ 412 (430)
..+...++|+++.|.+|++++ +| |++..++++++.+..... ++.+ ..+++.....+..++++
T Consensus 185 id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~ 264 (401)
T PLN02409 185 FRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALD 264 (401)
T ss_pred ccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Confidence 122223568999999999965 55 899999999888764221 1100 11344445666778899
Q ss_pred HHHccCCchHHHhhhh
Q psy2206 413 IIMGLENGDEGNVRHS 428 (430)
Q Consensus 413 ~l~~~~~~~~~~~r~~ 428 (430)
.+.++ +.+..+++.+
T Consensus 265 ~~~~~-G~e~i~~~~~ 279 (401)
T PLN02409 265 LIFEE-GLENVIARHA 279 (401)
T ss_pred HHHHh-hHHHHHHHHH
Confidence 88643 4455555443
No 237
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=98.83 E-value=1.8e-08 Score=104.91 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHH---HHHHHHHhc-CcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLP---EIVRLKNKY-KAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~---~I~~La~~y-~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|+++++.. .+.++++.++.+++|.+.+.+ +|+++|++| +++||+||+|+.-.+.+ ....
T Consensus 201 ~~~l~~~~~~~------------~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~-~~~~- 266 (431)
T PRK15481 201 PEKLERALAQG------------ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSP-YHSV- 266 (431)
T ss_pred HHHHHHHHhcC------------CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCC-CCCC-
Confidence 56777766431 234555568999999999865 999999999 99999999997543321 1111
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
.... .+..|+++||||+|| +| ||+++++++++.+....... +...+.+...++.++|
T Consensus 267 --~~~~-~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l 326 (431)
T PRK15481 267 --IPQT-TQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSG--TQWVSHLLQDLVYACL 326 (431)
T ss_pred --CcCC-CCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhcc--ccCCCHHHHHHHHHHH
Confidence 1111 235799999999999 88 99999999999887543222 1224455445455554
No 238
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.83 E-value=7.2e-09 Score=107.08 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC-cEEE
Q psy2206 254 ERSKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK-AYLY 330 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~-~~Li 330 (430)
.-..+.+.++|+...- ...+++|+++|++ ++.+|++|++-|+...+.||++|+++|+++| ++++
T Consensus 109 ~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-------------~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~v 175 (386)
T PF01053_consen 109 RLLEELLPRFGVEVTFVDPTDLEALEAALRP-------------NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVV 175 (386)
T ss_dssp HHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-------------TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEE
T ss_pred hhhhhhhcccCcEEEEeCchhHHHHHhhccc-------------cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEE
Confidence 3334455566664322 2226778777764 5789999999999999999999999999998 9999
Q ss_pred EeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecC--HHHHHHHHhcCCcccccCCCcHHHH
Q psy2206 331 VDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGS--KSTIDYIRANSHVRSYATSMPPPVA 404 (430)
Q Consensus 331 vDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs--~~li~~l~~~~~~~~~s~s~~P~~~ 404 (430)
||.+.+.+++- . .+. ..+||++.|++|.++ .+||+++.+ +++++.++... ..++..++|..+
T Consensus 176 VDnT~atp~~~-------~--pL~-~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~--~~~G~~~~p~da 243 (386)
T PF01053_consen 176 VDNTFATPYNQ-------N--PLE-LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR--RLLGATLSPFDA 243 (386)
T ss_dssp EECTTTHTTTC----------GGG-GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH--HHHT-B--HHHH
T ss_pred eeccccceeee-------c--cCc-CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh--hhcCccchHHHH
Confidence 99998765421 1 122 246999999999996 356888755 47887776543 245777899999
Q ss_pred HHHHHHHHHH
Q psy2206 405 MQILTSMRII 414 (430)
Q Consensus 405 aaalaaL~~l 414 (430)
+..+..|+.+
T Consensus 244 ~ll~rgl~Tl 253 (386)
T PF01053_consen 244 WLLLRGLRTL 253 (386)
T ss_dssp HHHHHHHTTH
T ss_pred HHHhcCCCcH
Confidence 9888877665
No 239
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=98.83 E-value=1.3e-08 Score=108.81 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=60.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|..-++... ...+... .++...|+++||||+|+++
T Consensus 282 ~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~---~~~~~vi~~~S~SK~~~~~ 358 (517)
T PRK13355 282 TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASL---APDLFCVTFSGLSKSHMIA 358 (517)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHh---CCCCeEEEEecchhhccCc
Confidence 456666678999999998 89999999999999999999986555321 1122222 2223356679999999999
Q ss_pred c---ceee--cCHHH
Q psy2206 373 G---GYVA--GSKST 382 (430)
Q Consensus 373 G---G~v~--gs~~l 382 (430)
| ||++ +++++
T Consensus 359 G~RiG~~i~~~~~~~ 373 (517)
T PRK13355 359 GYRIGWMILSGNKRI 373 (517)
T ss_pred ccceEEEEeeCchhh
Confidence 9 9988 44543
No 240
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.82 E-value=1.5e-08 Score=104.50 Aligned_cols=134 Identities=12% Similarity=0.098 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
......+.++|+...-.. .+++|++.+++ ++++|++|++.+++|.+.|+++|.++|++||++||+
T Consensus 103 ~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~-------------~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~viv 169 (380)
T PRK06176 103 RLFDKVLVKNGLSCTIIDTSDLSQIKKAIKP-------------NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIV 169 (380)
T ss_pred HHHHHHHHhcCeEEEEcCCCCHHHHHHhcCc-------------CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEE
Confidence 444455666776432211 25666655432 467899999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aa 406 (430)
|++|+.+.++. - +. ..+||++.|++|.++. .||++++ ++++.+.++.... ..+..++|..++.
T Consensus 170 D~t~a~~~~~~---p------~~-~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~--~~G~~~~~~~~~l 237 (380)
T PRK06176 170 DNTFATPYYQN---P------LL-LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN--AIGGVLGPQDSWL 237 (380)
T ss_pred ECCccccccCC---c------cc-cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHH--HhcCCCCHHHHHH
Confidence 99998765432 1 11 2468999999999964 4687776 4666666654221 1244567776666
Q ss_pred HHHHHH
Q psy2206 407 ILTSMR 412 (430)
Q Consensus 407 alaaL~ 412 (430)
++..++
T Consensus 238 ~~~gl~ 243 (380)
T PRK06176 238 LQRGIK 243 (380)
T ss_pred HHhccC
Confidence 655553
No 241
>PRK08363 alanine aminotransferase; Validated
Probab=98.82 E-value=1.1e-08 Score=105.46 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=65.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...+......+.. +......|+++||||+|+++|
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~---~~~~~~vi~~~SfSK~~~~~G 243 (398)
T PRK08363 167 TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGS---LTKDVPVIVMNGLSKVYFATG 243 (398)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHH---cCcCCcEEEEecchhccCCcc
Confidence 456666788999999887 89999999999999999999986555321112111 112234688999999999999
Q ss_pred ---ceeec--CHHHHHHHHh
Q psy2206 374 ---GYVAG--SKSTIDYIRA 388 (430)
Q Consensus 374 ---G~v~g--s~~li~~l~~ 388 (430)
||+++ ++++++.++.
T Consensus 244 lRiG~~~~~~~~~~~~~l~~ 263 (398)
T PRK08363 244 WRLGYIYFVDPEGKLAEVRE 263 (398)
T ss_pred ceEEEEEEeCcHHHHHHHHH
Confidence 99986 7777766554
No 242
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.82 E-value=4.3e-09 Score=109.74 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=70.9
Q ss_pred HHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+..+|....- ...+++|+++|.+ ++++|++|++.|++|.+.|+++|+++|++||+++|+||
T Consensus 113 ~~~~~~~~G~~v~~v~~~d~~~l~~~l~~-------------~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~ 179 (418)
T TIGR01326 113 FKHTLKRLGIEVRFVDPDDPEEFEKAIDE-------------NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDN 179 (418)
T ss_pred HHHHHHHcCcEEEEECCCCHHHHHHhcCc-------------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 34445566653221 1125566665532 35688899999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcccc----ceeecC
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG----GYVAGS 379 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G----G~v~gs 379 (430)
+|+.+.+.. . +. ..+||++.|++|.+|..| |.++.+
T Consensus 180 t~~~~~~~~-------~--l~-~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 180 TFATPYLCR-------P--ID-HGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred CCchhhcCC-------c--hh-cCCeEEEECccccccCCccceEEEEEec
Confidence 997653211 1 11 246999999999998754 545544
No 243
>PLN02651 cysteine desulfurase
Probab=98.82 E-value=8.6e-09 Score=104.85 Aligned_cols=121 Identities=19% Similarity=0.235 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++ ++.+|++..+.+++|.+.|+++|.++|++||++++||.+|+.|.+. +.
T Consensus 128 ~~~l~~~i~~-------------~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~---------~~ 185 (364)
T PLN02651 128 LDELAAAIRP-------------DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIP---------VD 185 (364)
T ss_pred HHHHHHhcCC-------------CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcc---------cC
Confidence 6777777643 3668899999999999999999999999999999999999876431 22
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC------CcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS------HVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~------~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+...++|+++.|..|.+|..| |++..+++..+.+.... ..+ ...+.+...+.+..++|+.+.+
T Consensus 186 ~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~-~~GT~~~~~~~~l~~al~~~~~ 255 (364)
T PLN02651 186 VDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGR-RSGTENTPLVVGLGAACELAMK 255 (364)
T ss_pred cccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCc-cCCCccHHHHHHHHHHHHHHHH
Confidence 222357999999999756555 77777765554333211 111 2334566667777889998865
No 244
>KOG1403|consensus
Probab=98.82 E-value=6.4e-09 Score=102.00 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT- 348 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~- 348 (430)
+++++++++....|+ ..+.+|.|+..|-.|.+.| +.++.+..+.+|.+.|.||++ +| ||+-|+-.+
T Consensus 194 d~vk~I~~d~~~~g~-------gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQ-vG-FGRvG~hyWa 264 (452)
T KOG1403|consen 194 DPVKEICQDQLAKGQ-------GVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQ-VG-FGRVGSHYWA 264 (452)
T ss_pred hHHHHHHHHHHhcCC-------cHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhh-hc-ccccchhhhh
Confidence 567777766433222 3556889999999999887 888888899999999999998 56 677776443
Q ss_pred -eecCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCC
Q psy2206 349 -EYFGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLEN 419 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~ 419 (430)
+.++.-| ||+ |++|.+| -+-+.|+..+++.+.+......|.-+...+|+.||+.++.+++++.|+-
T Consensus 265 fq~y~fiP---DIV--tmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~L 333 (452)
T KOG1403|consen 265 FQTYNFIP---DIV--TMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENL 333 (452)
T ss_pred hhhhcccc---chh--eecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhH
Confidence 5566655 788 9999996 4558899999999999887777777888999999999999999987744
No 245
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=98.82 E-value=9.5e-09 Score=105.16 Aligned_cols=107 Identities=11% Similarity=0.162 Sum_probs=70.7
Q ss_pred EEEEEcCccCCCCcccCHHHHHHH---HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVRLPEIVRL---KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~L~~I~~L---a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++|++..+.+++|.+.+.+++.+| |++++ ++|+||+|...+........... +...+..|+++||||+||++|
T Consensus 153 ~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~--~~~~~~vi~~~SfSK~~~l~Gl 229 (366)
T PRK01533 153 KIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPL--LEKHKNILVLRTFSKAYGLASF 229 (366)
T ss_pred cEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHH--hccCCCEEEEeCchHHhcChHH
Confidence 456666889999999996555555 45555 67889999643222110111111 112245799999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++..... ...+++..+++.++|
T Consensus 230 RiG~~i~~~~~~~~l~~~~~~----~~~~~~~q~aa~~~l 265 (366)
T PRK01533 230 RVGYAVGHEELIEKLNVVRLP----FNVSSLAQKAATIAF 265 (366)
T ss_pred HHhHHhCCHHHHHHHHHhcCC----CCcCHHHHHHHHHHh
Confidence 9999999999998875422 235555555566665
No 246
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=98.82 E-value=2.3e-08 Score=103.71 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|..-+++. .-......+......|+++||||+||++|
T Consensus 178 ~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~pG 255 (412)
T PTZ00433 178 TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG--ATFTSVADFDTTVPRVILGGTAKNLVVPG 255 (412)
T ss_pred ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCC--CCccchhhccCCCceEEEccchhhcCCCC
Confidence 456677888999998776 7888999999999999999997554532 11111111211223588999999999999
Q ss_pred ---ceeec------CHHHHHHHHhc
Q psy2206 374 ---GYVAG------SKSTIDYIRAN 389 (430)
Q Consensus 374 ---G~v~g------s~~li~~l~~~ 389 (430)
||+++ .+++++.++..
T Consensus 256 lRlG~~i~~~p~~~~~~~~~~~~~~ 280 (412)
T PTZ00433 256 WRLGWLLLVDPHGNGGDFLDGMKRL 280 (412)
T ss_pred eeEEEEEEeCCcccHHHHHHHHHHH
Confidence 99986 25677777664
No 247
>PRK10534 L-threonine aldolase; Provisional
Probab=98.81 E-value=5.5e-09 Score=104.57 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=68.4
Q ss_pred ceEEEEEcCccCCCCcccCHHH---HHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPE---IVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~---I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++++. +|.+.|+++ |+++|++|+++|++||||..+..+..+..... +. ...|.++.||||++|++
T Consensus 129 ~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~---~~-~~~~~~~~s~SK~~~~~ 202 (333)
T PRK10534 129 RTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE---IT-QYCDSFTICLSKGLGTP 202 (333)
T ss_pred cceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH---HH-hcCCEEEEEeEcCCCCc
Confidence 35577777765 599988655 56788999999999999864321111211111 11 12245556999999974
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
|||+++++++++.++.....+....+.+.+++++++++|+
T Consensus 203 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~ 243 (333)
T PRK10534 203 VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALK 243 (333)
T ss_pred ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 5689999999998886443221111223344555556664
No 248
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.81 E-value=1.7e-08 Score=105.68 Aligned_cols=73 Identities=26% Similarity=0.382 Sum_probs=59.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.|++|.+.|+++|+++|++||+++|+||+|+.+.... .+. ..+|+++.|++|.+|.
T Consensus 148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~---------pl~-~gaDivv~S~tK~lgg~~~~ 217 (427)
T PRK05994 148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIR---------PIE-HGADIVVHSLTKFLGGHGNS 217 (427)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCC---------ccc-cCCcEEEEcCccccCCCCCc
Confidence 46789999999999999999999999999999999999998664321 121 3569999999999975
Q ss_pred ccceeec
Q psy2206 372 MGGYVAG 378 (430)
Q Consensus 372 ~GG~v~g 378 (430)
.||+++.
T Consensus 218 ~gG~v~~ 224 (427)
T PRK05994 218 MGGIIVD 224 (427)
T ss_pred EEEEEEe
Confidence 4566653
No 249
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=98.81 E-value=3e-08 Score=101.19 Aligned_cols=91 Identities=20% Similarity=0.144 Sum_probs=67.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+.+|++..+.+++|.+.+.+++.++++. +++++|+||+|....+.+ ........ .+..|+++||||+||++|
T Consensus 153 ~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~---~~~~~~~~--~~~vi~~~SfSK~~gl~Gl 227 (364)
T PRK04781 153 AKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVP---SAVGLLAR--YDNLAVLRTLSKAHALAAA 227 (364)
T ss_pred CeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCc---chHHHHhh--CCCEEEEecChhhcccccc
Confidence 4566667899999999998888777764 478999999997433221 11111121 234689999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCc
Q psy2206 374 --GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~ 392 (430)
||+++++++++.++.....
T Consensus 228 RvGy~v~~~~l~~~l~~~~~~ 248 (364)
T PRK04781 228 RIGSLIANAELIAVLRRCQAP 248 (364)
T ss_pred eeeeeeCCHHHHHHHHhccCC
Confidence 9999999999999876543
No 250
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=98.81 E-value=4.7e-08 Score=98.84 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
++||+.+.+. +.+++|..++.+++|.+-. |.+|.+||++||++||.||+|+-.+++..-+-....
T Consensus 148 ~~LE~~~~~~------------~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ 215 (388)
T COG1168 148 DALEKAFVDE------------RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS 215 (388)
T ss_pred HHHHHHHhcC------------CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhh
Confidence 6777777652 4578999999999998864 999999999999999999999988876422111111
Q ss_pred cCCCCCCccEEEeCccchhcccc---ce-eecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMG---GY-VAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~G---G~-v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
......+..|.+.|-||+|..+| ++ |+.++++. .+++.... .....++.+..-|..+|.+
T Consensus 216 ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~--~~~~~~n~lg~~A~~aAY~ 280 (388)
T COG1168 216 LSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR--NGLHGPSALGIIATEAAYN 280 (388)
T ss_pred cChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH--hcCCCCchHHHHHHHHHHH
Confidence 11111355688889999998777 44 56667763 33333221 1233455555555555543
No 251
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.80 E-value=1.2e-08 Score=105.59 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=79.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.+++|.+.|+++|.++|+++|+++|+||+|+.+.... .+. ..+||++.|++|.++.
T Consensus 138 ~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~---------~~~-~g~Divv~S~tK~~~G~~~~ 207 (390)
T PRK08064 138 NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQK---------PLD-LGADVVLHSATKFLAGHSDV 207 (390)
T ss_pred CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccC---------chh-hCCcEEEeecceeccCCccc
Confidence 46799999999999999999999999999999999999987654211 111 2458999999999963
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
.+|+++. ++++++.++..... ++..++|..++.++..++.
T Consensus 208 laG~~v~~~~~~~~~l~~~~~~--~g~~~~~~~a~l~~~gl~t 248 (390)
T PRK08064 208 LAGLAVVKDEELAQKLYFLQNS--FGAVLGVQDCWLVLRGLKT 248 (390)
T ss_pred eeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHcccCc
Confidence 3576554 57888887764432 4666778777766665543
No 252
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=98.80 E-value=1.9e-08 Score=102.17 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=67.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +.+|+++|++|+++||+||+|...++. +........ ..+.+|+++||||+||++|
T Consensus 143 ~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~--~~~~~i~~~S~SK~~~~~G 218 (356)
T PRK08056 143 LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPD--ETGFIPQLA--DNPHLWVLRSLTKFYAIPG 218 (356)
T ss_pred CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCc--chHHHHHhc--cCCCEEEEEechhhccCcc
Confidence 457778899999999998 888999999999999999998643332 222111111 1235799999999999998
Q ss_pred ---ceeec-CHHHHHHHHhc
Q psy2206 374 ---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 374 ---G~v~g-s~~li~~l~~~ 389 (430)
||+++ ++++++.++..
T Consensus 219 ~RiG~~v~~~~~~~~~l~~~ 238 (356)
T PRK08056 219 LRLGYLVNSDDAAVARMRRQ 238 (356)
T ss_pred hhheeeecCCHHHHHHHHHh
Confidence 99987 56788887763
No 253
>PTZ00376 aspartate aminotransferase; Provisional
Probab=98.80 E-value=1.4e-08 Score=105.07 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC---CCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT---GRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~---GrG 346 (430)
++.+++.+++. ..+++++++.++.|++|.+.+ +.+|+++|++|+++||+||+|..-.++.. ...
T Consensus 163 ~~~l~~~~~~~----------~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~ 232 (404)
T PTZ00376 163 FDGMLEDLRTA----------PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYA 232 (404)
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHH
Confidence 56777777542 013568889999999999987 77888889999999999999975444310 000
Q ss_pred cceecCCCCCCccEEEeCccchhcccc---cee---ecCHHHHHHH
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGSMG---GYV---AGSKSTIDYI 386 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v---~gs~~li~~l 386 (430)
+...... .+..|+++||||+|+++| ||+ ++++++++.+
T Consensus 233 ~~~~~~~--~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l 276 (404)
T PTZ00376 233 IRLFAER--GVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANV 276 (404)
T ss_pred HHHHHhc--CCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHH
Confidence 1111111 124699999999999999 998 6788766544
No 254
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=98.79 E-value=4.2e-08 Score=103.79 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~ 348 (430)
+++|++.+++.... ..+.++|++.++.+++|.+.+ +.+|+++|++|+++||+||+|+.-++... -..+.
T Consensus 175 ~~~le~~~~~~~~~-------~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l 247 (468)
T PLN02450 175 ESALEEAYQQAQKL-------NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVM 247 (468)
T ss_pred HHHHHHHHHHHHhc-------CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHH
Confidence 46677776653211 113445555588999999987 77888889999999999999986555321 11211
Q ss_pred eec------CCCCCCccEEEeCccchhcccc---ceeecCH-HHHHHHHhc
Q psy2206 349 EYF------GIDPREVDILMGTYTKSFGSMG---GYVAGSK-STIDYIRAN 389 (430)
Q Consensus 349 e~~------g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~-~li~~l~~~ 389 (430)
... +..+.+..|+++||||.||++| ||+++++ .+++.+...
T Consensus 248 ~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~ 298 (468)
T PLN02450 248 EVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKM 298 (468)
T ss_pred HHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHH
Confidence 111 1112345799999999999999 9999974 466766653
No 255
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=98.78 E-value=2.8e-08 Score=101.04 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=66.4
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
.+|++..+.+++|.+.+ +.+|+++|++|++++|+||+|..-+++.......... ...+..|+++||||.||++|
T Consensus 143 ~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~--~~~~~vi~~~S~SK~~gl~G~ 220 (354)
T PRK06358 143 DLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL--ENFKNLIIIRAFTKFFAIPGL 220 (354)
T ss_pred CEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc--cCCCCEEEEEechhhccCcch
Confidence 34445567999999987 8888889999999999999997544432111111122 22234699999999999999
Q ss_pred --ceeec-CHHHHHHHHhcC
Q psy2206 374 --GYVAG-SKSTIDYIRANS 390 (430)
Q Consensus 374 --G~v~g-s~~li~~l~~~~ 390 (430)
||+++ ++.+++.+....
T Consensus 221 RiG~lv~~~~~~~~~~~~~~ 240 (354)
T PRK06358 221 RLGYGLTSNKNLAEKLLQMR 240 (354)
T ss_pred hheeeecCCHHHHHHHHHhC
Confidence 99987 478888887754
No 256
>PRK08354 putative aminotransferase; Provisional
Probab=98.78 E-value=3.7e-08 Score=98.28 Aligned_cols=80 Identities=28% Similarity=0.326 Sum_probs=60.8
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+ +++|+++|++||++||+||+|...+++. .. .. .+..|+++||||+||++|
T Consensus 120 ~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~--~~------~~-~~~vi~~~S~SK~~~l~GlR 190 (311)
T PRK08354 120 VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP--ES------PE-GENIIKLRTFTKSYGLPGIR 190 (311)
T ss_pred EEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc--cc------cC-CCcEEEEeccHhhcCCccce
Confidence 4555677899999987 6777788899999999999997544432 11 11 245799999999999999
Q ss_pred -ceeecCHHHHHHHHhcC
Q psy2206 374 -GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~ 390 (430)
||+++ +++.++...
T Consensus 191 iG~~v~---~~~~l~~~~ 205 (311)
T PRK08354 191 VGYVKG---FEEAFRSVR 205 (311)
T ss_pred eeeeee---hHHHHHHcC
Confidence 99988 566666543
No 257
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=98.78 E-value=2.5e-08 Score=103.24 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=62.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.++|++.++.+++|.+.+ +.+|+++|++|+++||.||+|+.-.+... -..+....+. .+..|+++||||+||++
T Consensus 177 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 177 VDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGA--RECAIEFRSFSKTAGFT 254 (409)
T ss_pred ceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCc--ccceEEEecCccccCCc
Confidence 345555588999999987 67788889999999999999985443221 0111111111 23468899999999999
Q ss_pred c---ceeecCHHHHH
Q psy2206 373 G---GYVAGSKSTID 384 (430)
Q Consensus 373 G---G~v~gs~~li~ 384 (430)
| ||+++++++++
T Consensus 255 GlRiG~~i~~~~li~ 269 (409)
T PRK07590 255 GTRCAYTVVPKELKG 269 (409)
T ss_pred CceeEEEEcCHHHhh
Confidence 9 99999999987
No 258
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.78 E-value=1.9e-08 Score=103.03 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=80.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++.+|++|++.+++|.+.|+++|+++|+++|+++||||+|... +|. .. +. ..+||+++|++|.++.
T Consensus 132 ~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~-~~~---~p-----~~-~g~Divv~S~sK~l~G~~g~ 201 (366)
T PRK07582 132 GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATP-LGQ---RP-----LE-LGADLVVASDTKALTGHSDL 201 (366)
T ss_pred CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCc-ccc---Cc-----hh-cCCcEEEecccccccCCCCe
Confidence 4568889999999999999999999999999999999998643 221 11 11 2358999999999953
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+||+++ ++++++.++... .+ .+..++|..++.++..|+.+
T Consensus 202 ~~G~v~~~~~~l~~~l~~~~-~~-~g~~~~~~~a~l~~r~l~tl 243 (366)
T PRK07582 202 LLGYVAGRDPELMAAVERWR-LL-AGAIPGPFEAWLAHRSLGTL 243 (366)
T ss_pred eEEEEEcCcHHHHHHHHHHH-HH-hCCCCCHHHHHHHHhccccH
Confidence 3588876 578888776533 22 34567888888777776654
No 259
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=98.77 E-value=2.2e-08 Score=101.57 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=73.6
Q ss_pred EEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 298 ILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++|++.++.+++|.+.+.+++.++++.. +++||+||+|+.-.. .+.. .... ...+..|+++||||+||++|
T Consensus 156 k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~--~~~~-~~~~--~~~~~vi~~~SfSK~~~~~GlR 230 (357)
T PRK14809 156 RIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAE--RPSA-VALV--EERDDVAVLRTFSKAYGLAGLR 230 (357)
T ss_pred cEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccC--Cchh-HHHH--hhCCCEEEEecchhHhcCcchh
Confidence 3555569999999999988888777654 789999999975432 1211 1111 11234688999999999999
Q ss_pred -ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 -GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+...... ...+++...+++++|
T Consensus 231 iG~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~l 265 (357)
T PRK14809 231 LGYAVVPEEWADAYARVNTP----FAASELACRAGLAAL 265 (357)
T ss_pred heeeecCHHHHHHHHHhCCC----CCCCHHHHHHHHHHh
Confidence 9999999999988875422 224555555555555
No 260
>PLN02955 8-amino-7-oxononanoate synthase
Probab=98.77 E-value=2.6e-08 Score=105.09 Aligned_cols=93 Identities=17% Similarity=0.282 Sum_probs=69.1
Q ss_pred CCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2206 229 GTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSSLEAGLQKALLEGQPHSGKPWRKILIV 301 (430)
Q Consensus 229 G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi 301 (430)
|+.+++|||+|||||||++|| .+++++++++++||+++++||+ -++||+.|.+.. +. ..++++
T Consensus 99 ~~~r~~l~FsSndYLGL~~~p-~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--g~-------e~all~ 168 (476)
T PLN02955 99 GRFKKLLLFSGNDYLGLSSHP-TISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--KK-------EDCLVC 168 (476)
T ss_pred CCCceEEEeeccCccCCCCCH-HHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--CC-------CcEEEE
Confidence 444899999999999999986 8999999999999999999999 277999998742 21 233332
Q ss_pred EcCccCCCCcccCHHHHHHHH-------------HhcCcEEEEec-cccc
Q psy2206 302 VEGIFSMDGSIVRLPEIVRLK-------------NKYKAYLYVDE-AHSI 337 (430)
Q Consensus 302 ~E~v~sm~G~i~~L~~I~~La-------------~~y~~~LivDE-Ah~~ 337 (430)
. .|-.+.+..|..|+ ...+.+++.|+ +|..
T Consensus 169 s------SGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaS 212 (476)
T PLN02955 169 P------TGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHAS 212 (476)
T ss_pred C------ChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHH
Confidence 2 35556666666653 23466788898 5654
No 261
>PRK09265 aminotransferase AlaT; Validated
Probab=98.77 E-value=2.7e-08 Score=102.74 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=58.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+.-.++.. -......+.++...|+++||||+||++|
T Consensus 169 ~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~vi~~~S~SK~~~~pG 246 (404)
T PRK09265 169 TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASLAPDLLCVTFNGLSKAYRVAG 246 (404)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHcCCCceEEEEecchhhccCcc
Confidence 446666678999999998 89999999999999999999975444321 1111111222234578899999999998
Q ss_pred ---ceeec
Q psy2206 374 ---GYVAG 378 (430)
Q Consensus 374 ---G~v~g 378 (430)
||+++
T Consensus 247 lRiG~~v~ 254 (404)
T PRK09265 247 FRVGWMVL 254 (404)
T ss_pred cceEEEEE
Confidence 99884
No 262
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=98.77 E-value=2.3e-08 Score=100.75 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=75.3
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhc-CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---c
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKY-KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG---G 374 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y-~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G 374 (430)
+|++.++.+++|.+.+.+++.+|++.+ ++++|+||+|.. |+. ......... .+.+|+++||||++|++| |
T Consensus 147 ~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~--~~~--~~~~~~~~~--~~~~i~~~S~SK~~~~~GlR~G 220 (353)
T PRK05387 147 GIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVD--FGG--ESAIPLIDR--YPNLLVVQTFSKSRSLAGLRVG 220 (353)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccc--cCC--cchHHHHhh--CCCEEEEEehhHhhcchhhhce
Confidence 567778899999999999999999876 999999999953 432 111111111 234799999999999999 9
Q ss_pred eeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 375 YVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
|+++++++++.++.....+ .+.+.+++..+++.+++
T Consensus 221 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~q~~~~~~l 256 (353)
T PRK05387 221 FAIGHPELIEALNRVKNSF-NSYPLDRLAQAGAIAAI 256 (353)
T ss_pred eeecCHHHHHHHHHhhccC-CCCCcCHHHHHHHHHHh
Confidence 9999999999988754322 12234444444444554
No 263
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=98.76 E-value=3.6e-08 Score=99.82 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred EEEEcCccCCCCcccCHHHHHHH---HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRL---KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~L---a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+.+++.++ |++++.++|+||+|.-.... ..+.... . .+..|+++||||+||++|
T Consensus 133 ~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~---~s~~~~~--~-~~~vi~l~SfSK~~gl~GlR 206 (339)
T PRK06959 133 HLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA---ASLAAHT--D-RPGLVVLRSVGKFFGLAGVR 206 (339)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc---ccchhcc--C-CCCEEEEecChhhcCCcchh
Confidence 46666678999999986666655 56789999999999753211 1221111 1 123589999999999999
Q ss_pred -ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 -GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++....++ + .+.+..+++.++|
T Consensus 207 iGy~v~~~~li~~l~~~~~~~--~--vs~~~q~a~~~~L 241 (339)
T PRK06959 207 AGFVLAAPALLAALRDALGAW--T--VSGPARHAVRAAF 241 (339)
T ss_pred eEEEecCHHHHHHHHHhcCCC--C--CcHHHHHHHHHHh
Confidence 99999999999998865432 2 2334444455554
No 264
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=98.76 E-value=3.4e-08 Score=100.30 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=74.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+.++++.++.+++|.+.+.++|.++++++++ +|+||+|.--++............ ..+..|+++||||+||++|
T Consensus 149 ~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~--~~~~vi~i~S~SK~~~l~GlRi 225 (360)
T PRK07392 149 NDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLA--EYPNLIILRSLTKFYSLPGLRL 225 (360)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhh--cCCCEEEEEechhhhcCCchhe
Confidence 4466777889999999999999999999985 677999975433221111111111 1234699999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+...... + +.+.+...++.++|
T Consensus 226 G~~v~~~~~~~~~~~~~~~--~--~~s~~~q~~~~~~l 259 (360)
T PRK07392 226 GYAIAHPDRLQRWQQWRDP--W--PVNGLAAAAAIAAL 259 (360)
T ss_pred eeeeCCHHHHHHHHhhCCC--C--CCCHHHHHHHHHHh
Confidence 9999999999888764321 2 24444444444444
No 265
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=98.76 E-value=2.9e-08 Score=100.78 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+.+|++..+.+++|.+.+.+++.++++.. +++||+||||.... .. ......... .+..|++.||||+||++|
T Consensus 146 ~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~--~~-~s~~~~~~~--~~n~iv~rSfSK~~glaGl 220 (351)
T PRK01688 146 VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFC--PQ-ASLAGWLAE--YPHLVILRTLSKAFALAGL 220 (351)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcC--CC-CChHHHHhh--CCCEEEEecchHhhcCHHH
Confidence 44677779999999999877766666432 68999999996432 11 111111111 123689999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCc
Q psy2206 374 --GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~ 392 (430)
||+++++++++.++....+
T Consensus 221 RiGy~i~~~~~i~~l~~~~~~ 241 (351)
T PRK01688 221 RCGFTLANEEVINLLLKVIAP 241 (351)
T ss_pred HHhHHhCCHHHHHHHHhccCC
Confidence 9999999999999875544
No 266
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.76 E-value=3.5e-08 Score=101.88 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=59.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+.-.++. ........+.+....|+++||||+|+++|
T Consensus 170 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~~~pG 247 (403)
T TIGR01265 170 TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD--APFIPMASFASIVPVLSLGGISKRWVVPG 247 (403)
T ss_pred ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCccchhhhccCCcEEEEeecccccCCCc
Confidence 446666778899999976 8999999999999999999998655532 11111111222223689999999999998
Q ss_pred ---ceeecC
Q psy2206 374 ---GYVAGS 379 (430)
Q Consensus 374 ---G~v~gs 379 (430)
||++++
T Consensus 248 lRiG~~v~~ 256 (403)
T TIGR01265 248 WRLGWIIIH 256 (403)
T ss_pred ceEEEEEEe
Confidence 998873
No 267
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.76 E-value=1.7e-08 Score=105.69 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=89.3
Q ss_pred HHHHHHhCCCCCCCC---CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 257 KESVKQSGCALCSPS---APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 257 ~~ai~~yG~g~~~sr---~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
...+.++|+...-.. .+++|++++++ ++++|++|++.++.+.+.|+++|+++|++||++||+|+
T Consensus 118 ~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~-------------~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~ 184 (432)
T PRK06702 118 GVSLRKLGIDVTFFNPNLTADEIVALAND-------------KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDN 184 (432)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHhCCc-------------CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEC
Confidence 344566676332211 25677777653 46688899999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCH----------HHH----------------
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSK----------STI---------------- 383 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~----------~li---------------- 383 (430)
+++...+- . .+. ..+||++.|+||.++ ..||.++... +++
T Consensus 185 T~~tP~~~-------~--pl~-~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~ 254 (432)
T PRK06702 185 TLATPYLC-------Q--AFE-HGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFG 254 (432)
T ss_pred CCCchhhC-------C--hhh-cCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccc
Confidence 98654321 1 122 356999999999775 3556665321 111
Q ss_pred -----HHHH-hcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 384 -----DYIR-ANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 384 -----~~l~-~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
...+ ...+ .++++++|..++.++..|+.+
T Consensus 255 ~~~~~~~~~~~~~~--~~g~~~sp~~a~l~~rgL~Tl 289 (432)
T PRK06702 255 AAAYIVKARVQLLR--DYGNCMSPFNAYISNIGLETL 289 (432)
T ss_pred hhhHHHHHHHHHHH--HccCCCCHHHHHHHHhccCcH
Confidence 1111 1111 246689999999888877665
No 268
>PLN02397 aspartate transaminase
Probab=98.75 E-value=2.4e-08 Score=104.24 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=64.4
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC---CccceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG---RGVTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G---rG~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++|++.++.+++|.+.+ +++|+++|++||++||+||+|..-+++... ..+..... . .+..|+++||||+|
T Consensus 194 ~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~-~-~~~vI~~~SfSK~~ 271 (423)
T PLN02397 194 GSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVE-D-GHEILVAQSYAKNM 271 (423)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHh-c-CCcEEEEEECcccC
Confidence 4678999999999999987 777888999999999999999865554211 11111111 1 12368999999999
Q ss_pred cccc---ceee---cCHHHHHH
Q psy2206 370 GSMG---GYVA---GSKSTIDY 385 (430)
Q Consensus 370 G~~G---G~v~---gs~~li~~ 385 (430)
+++| ||++ +++++++.
T Consensus 272 ~~~G~RvG~~v~~~~~~~~~~~ 293 (423)
T PLN02397 272 GLYGERVGALSVVCKSADVAVR 293 (423)
T ss_pred CCccccceEEEEEeCCHHHHHH
Confidence 9999 9973 46666543
No 269
>KOG0053|consensus
Probab=98.73 E-value=4e-08 Score=100.84 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=85.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----S 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~ 371 (430)
++.+|.+|++-||...+.|+++|.++|++||++++||++.+.+++ +.-+. ..+||++.|++|.|| .
T Consensus 162 ~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-------~~pL~---lGADIV~hSaTKyi~Ghsdv 231 (409)
T KOG0053|consen 162 NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-------QDPLP---LGADIVVHSATKYIGGHSDV 231 (409)
T ss_pred CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-------cChhh---cCCCEEEEeeeeeecCCcce
Confidence 578999999999999999999999999999999999999654432 11222 346999999999997 4
Q ss_pred ccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+||.++.+ .++...++..... ....++|..+...++.++.+
T Consensus 232 i~G~iv~n~~~~~~~l~~~~~~--lg~~~~p~~~~ll~Rglktl 273 (409)
T KOG0053|consen 232 IGGSVVLNSEELASRLKFLQED--LGWCEDPFDLFLLSRGLKTL 273 (409)
T ss_pred eeeEEecCcHHHHHHHHHHHHH--hcCCCCHHHHHHHhcCcchh
Confidence 67888885 8888887765432 35668999999888776655
No 270
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=98.73 E-value=2.8e-08 Score=106.23 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=59.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+++|++..+.+++|.+.+ +.+|+++|++| +++||+||+|+.-+. ....+... .+ +..|+++||||+||+
T Consensus 241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl~~~---~~-~~vI~v~SfSK~fg~ 314 (521)
T TIGR03801 241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSLFAE---LP-YNTIGVYSFSKYFGA 314 (521)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccchhhh---CC-CCEEEEEcchhhccC
Confidence 456666688999999988 78888889887 999999999985332 12222222 22 357999999999999
Q ss_pred cc---ceeecCHH
Q psy2206 372 MG---GYVAGSKS 381 (430)
Q Consensus 372 ~G---G~v~gs~~ 381 (430)
+| ||++++++
T Consensus 315 ~G~RlG~i~~~~~ 327 (521)
T TIGR03801 315 TGWRLGTIALHKD 327 (521)
T ss_pred chhhhhhhhcCch
Confidence 99 99998765
No 271
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.73 E-value=6.9e-08 Score=97.64 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.|.+. ...++++. ..+++|.+.|+++|.++|++||++|+|||||+.++++....+. .+.
T Consensus 141 ~~~l~~~i~~~------------~~~vi~~~-~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~--~~~ 205 (371)
T PRK13520 141 VKAVEDLIDDN------------TIGIVGIA-GTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPP--NFD 205 (371)
T ss_pred HHHHHHHHhhC------------CEEEEEEc-CCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCC--Ccc
Confidence 67888877641 12344444 4578999999999999999999999999999866532111111 112
Q ss_pred CCCCCccEEEeCccchhc--c-ccceeecCHHHHHHHHhcCCccccc-------CCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFG--S-MGGYVAGSKSTIDYIRANSHVRSYA-------TSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G--~-~GG~v~gs~~li~~l~~~~~~~~~s-------~s~~P~~~aaalaaL~~l~~ 416 (430)
.....+|.+..|.+|... . .|++++.++++++.+.. ..++.++ .+.++..++++.++|+.+.+
T Consensus 206 ~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~ 278 (371)
T PRK13520 206 FSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAV-DTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGR 278 (371)
T ss_pred ccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcc-cCccccCCCCcceEeeccChHHHHHHHHHhhhcH
Confidence 212346788888889543 2 23456567778887753 2233221 12334456667778877643
No 272
>PRK15029 arginine decarboxylase; Provisional
Probab=98.73 E-value=4.3e-08 Score=108.55 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhcCCCCCC---CCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccce
Q psy2206 274 SSLEAGLQKALLEGQPHSG---KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTE 349 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~---~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e 349 (430)
+.+++.|+++. ... ......+||+.+-| +|.+.++++|+++|+++++.|+|||||+..+ |++ .+..
T Consensus 293 e~i~~~l~~~p-----~~k~~~~~~~~avvlt~PTY--~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~---~~p~ 362 (755)
T PRK15029 293 ETLQKKISESP-----LTKDKAGQKPSYCVVTNCTY--DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNP---IYAD 362 (755)
T ss_pred HHHHHHHHhCc-----hhhhccccCceEEEEECCCC--cceeeCHHHHHHHHHhcCCeEEEECccccccccCc---cccc
Confidence 57788886631 110 00113678887777 7999999999999999999999999998654 332 1221
Q ss_pred ecCC-----CCCCcc-EEEeCccchhcc--ccceeecCHH--HH--HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 350 YFGI-----DPREVD-ILMGTYTKSFGS--MGGYVAGSKS--TI--DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 350 ~~g~-----~~~~~d-Iv~~TlSKa~G~--~GG~v~gs~~--li--~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+..+ .....| +++.|.+|.+++ +++++..... .+ +.++. +.....|||++-+.+|..-.|.+.+...
T Consensus 363 ~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~-~l~~~qSTSPSY~LmASLD~ar~~m~~~ 441 (755)
T PRK15029 363 HYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ-AYMMHATTSPLYAICASNDVAVSMMDGN 441 (755)
T ss_pred cccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHhhh
Confidence 1222 113457 999999999974 5567654322 22 23333 2122235666666666555566665543
Q ss_pred CCch
Q psy2206 418 ENGD 421 (430)
Q Consensus 418 ~~~~ 421 (430)
.|..
T Consensus 442 ~G~~ 445 (755)
T PRK15029 442 SGLS 445 (755)
T ss_pred hhHH
Confidence 4533
No 273
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.73 E-value=1.1e-07 Score=100.41 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=63.7
Q ss_pred EEEEcCccCCCC--cccCHHHHHHHHHhcCcEEEEeccccccccCCCCC-cccee---cCCCCCCccEEEeCccchhc-c
Q psy2206 299 LIVVEGIFSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEY---FGIDPREVDILMGTYTKSFG-S 371 (430)
Q Consensus 299 lIi~E~v~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~---~g~~~~~~dIv~~TlSKa~G-~ 371 (430)
+++..+.|+|+| .+.|+++|+++|++||+++++|. +.|++++.+. |+... .......+|+++.|.+|.+| .
T Consensus 216 ~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~--~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp 293 (454)
T TIGR00474 216 LKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDL--GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP 293 (454)
T ss_pred EEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEEC--CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC
Confidence 344455567778 58999999999999999999996 4666765432 22211 11111357999999999996 4
Q ss_pred ccceeecCHHHHHHHHh
Q psy2206 372 MGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~ 388 (430)
.||++++++++++.++.
T Consensus 294 ~~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 294 QAGIIVGKKELIERLKK 310 (454)
T ss_pred eEEEEEECHHHHHhhhh
Confidence 58999999999887664
No 274
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=98.72 E-value=6.4e-09 Score=107.99 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCce---EEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccce
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRK---ILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTE 349 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~---~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e 349 (430)
++|+++|++. | ..+ .+||+.+-| +|.+.++++|+++|+++++.|+|||||+..+ |.+ -...
T Consensus 154 ~~i~~~l~~~-----p-----~~k~~~~vvlt~PTY--~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~---lp~~ 218 (417)
T PF01276_consen 154 EDIEEALKEH-----P-----DAKAPRLVVLTSPTY--YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHP---LPRS 218 (417)
T ss_dssp HHHHHHHHHC-----T-----TCHCESEEEEESS-T--TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSG---GGTT
T ss_pred HHHHHHHHhC-----c-----cccCceEEEEeCCCC--CeEEECHHHHHHHhcccCCEEEEEccccccccCCC---Cccc
Confidence 7788888874 2 223 377888777 7999999999999999999999999998654 211 1111
Q ss_pred ecCCCCCCcc-------EEEeCccchhcc--ccceeecCHHH-H--HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 350 YFGIDPREVD-------ILMGTYTKSFGS--MGGYVAGSKST-I--DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 350 ~~g~~~~~~d-------Iv~~TlSKa~G~--~GG~v~gs~~l-i--~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
... ...| +++.|.+|.+++ +++++....+. + +.++. +.....|||++-+.+|....+.+.++.+
T Consensus 219 a~~---~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~-~l~~~~TTSPSY~lmASlD~a~~~m~~~ 294 (417)
T PF01276_consen 219 ALA---LGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNE-ALSMHQTTSPSYPLMASLDVARAQMEEE 294 (417)
T ss_dssp CSS---TTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHH-HHHHHS-SS--HHHHHHHHHHHHHHSHH
T ss_pred hhh---ccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhh
Confidence 111 2345 999999999984 56777654442 2 33433 2222346667766666666666666355
Q ss_pred CCchHHH
Q psy2206 418 ENGDEGN 424 (430)
Q Consensus 418 ~~~~~~~ 424 (430)
.|....+
T Consensus 295 ~G~~l~~ 301 (417)
T PF01276_consen 295 EGRELLE 301 (417)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 5543333
No 275
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=98.72 E-value=1.9e-07 Score=95.04 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhCCCCC-------CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH
Q psy2206 251 LCTERSKESVKQSGCALC-------SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN 323 (430)
Q Consensus 251 ~v~~a~~~ai~~yG~g~~-------~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~ 323 (430)
.....+.+..+++|.... +.-.++++++.|.+ ++.+|++..+.+.+|.+.|+++|.++|+
T Consensus 100 s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~-------------~~~lv~~~~~~~~tG~~~pi~~I~~~~~ 166 (371)
T PF00266_consen 100 SNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNP-------------DTRLVSISHVENSTGVRNPIEEIAKLAH 166 (371)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHT-------------TESEEEEESBETTTTBBSSHHHHHHHHH
T ss_pred ccccccccccccchhhhccccccccchhhhhhhhhhhcc-------------ccceEEeecccccccEEeeeceehhhhh
Confidence 445566667778886321 22226888888864 4668889999999999999999999999
Q ss_pred hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCCccc--------
Q psy2206 324 KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSHVRS-------- 394 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~~~~-------- 394 (430)
++|+++++|=+|++|.+. ..+...++|++++|..|-+|.+| |++..+++.++.++....+..
T Consensus 167 ~~~~~~~vD~~~~~g~~~---------id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~ 237 (371)
T PF00266_consen 167 EYGALLVVDAAQSAGCVP---------IDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQ 237 (371)
T ss_dssp HTTSEEEEE-TTTTTTSS-----------TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHH
T ss_pred ccCCceeEechhcccccc---------ccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccch
Confidence 999999999999987542 23333467999999999335566 889999999998864332211
Q ss_pred ----------c-cCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 395 ----------Y-ATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 395 ----------~-s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| ..+++.....+..++++.+. +.+.+..+++..
T Consensus 238 ~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~-~~g~~~i~~~~~ 281 (371)
T PF00266_consen 238 EYGLADDARRFEGGTPNVPAIYALNEALKLLE-EIGIERIRERIR 281 (371)
T ss_dssp HHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hcccccccccccccceeeehhhhHHHHHhhhh-ccccccchhhhh
Confidence 1 12355555666777888883 334444444443
No 276
>PTZ00377 alanine aminotransferase; Provisional
Probab=98.72 E-value=5.8e-08 Score=102.86 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC--Ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG--RGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G--rG~ 347 (430)
+++|++.+.+.... ..++++|++-.+.|++|.+.+ +++|+++|++||++||+||+|...++.... ..+
T Consensus 202 ~~~l~~~l~~~~~~-------~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~ 274 (481)
T PTZ00377 202 QEELEEAYEQAVRN-------GITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISF 274 (481)
T ss_pred HHHHHHHHHHHHhc-------CCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccH
Confidence 57788887653110 013445555588999999998 899999999999999999999866663111 111
Q ss_pred cee-cCCCCC----CccEEEeCccch-hcccc---ceeec---CHHHHHHHHhcC
Q psy2206 348 TEY-FGIDPR----EVDILMGTYTKS-FGSMG---GYVAG---SKSTIDYIRANS 390 (430)
Q Consensus 348 ~e~-~g~~~~----~~dIv~~TlSKa-~G~~G---G~v~g---s~~li~~l~~~~ 390 (430)
... .++.+. ...|+++||||+ +|++| ||+++ ++++++.+....
T Consensus 275 ~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~ 329 (481)
T PTZ00377 275 RKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLA 329 (481)
T ss_pred HHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHh
Confidence 110 112111 135889999998 48888 99985 899999887744
No 277
>PRK06225 aspartate aminotransferase; Provisional
Probab=98.71 E-value=5.4e-08 Score=99.53 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=64.2
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+.-..+ .... ..+.+ +.+|++.||||.+|++|
T Consensus 159 ~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~---~~~~--~~~~~-~~~i~~~s~SK~~g~~G~ 232 (380)
T PRK06225 159 RLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE---HTLA--AEYAP-EHTVTSYSFSKIFGMAGL 232 (380)
T ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc---CCch--hhcCC-CCEEEEeechhhcCCccc
Confidence 34544467889999775 999999999999999999998532111 1111 11222 45788999999999888
Q ss_pred --ceeecCHHHHHHHHhc
Q psy2206 374 --GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~ 389 (430)
||+++++++++.++..
T Consensus 233 RiG~i~~~~~l~~~~~~~ 250 (380)
T PRK06225 233 RIGAVVATPDLIEVVKSI 250 (380)
T ss_pred eeEEEecCHHHHHHHHHH
Confidence 9999999999988764
No 278
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.71 E-value=6.8e-08 Score=99.76 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=63.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
..+|++..+.+++|.+.+ +++|+++|++|+++||+||+|...+++..- ..+....+. .+..|+++||||.||++
T Consensus 174 ~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 174 IDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGA--KECAIEFRSFSKTAGFT 251 (402)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCC--cccEEEEecCccccCCC
Confidence 345555589999999998 888999999999999999999865443210 111111111 13468899999999999
Q ss_pred c---ceeecCHHHH
Q psy2206 373 G---GYVAGSKSTI 383 (430)
Q Consensus 373 G---G~v~gs~~li 383 (430)
| ||++++++++
T Consensus 252 GlRiG~~i~~~~l~ 265 (402)
T TIGR03542 252 GVRLGWTVVPKELT 265 (402)
T ss_pred CcceEEEEecHHHh
Confidence 9 9999999887
No 279
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=98.71 E-value=1e-07 Score=100.39 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~ 348 (430)
++++|++++++... ..+.++|++..+.+++|.+.+ +.+|+++|++|+++||+||+|+..+++.. ...+.
T Consensus 184 ~~~le~a~~~a~~~-------~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~ 256 (447)
T PLN02607 184 PQALEAAYQEAEAA-------NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVA 256 (447)
T ss_pred HHHHHHHHHHHHHh-------CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHH
Confidence 57788877664211 124556667788999999988 88999999999999999999987777532 11222
Q ss_pred ee---cCC-CCCCccEEEeCccchhcccc---ceeec-CHHHHHHHHhc
Q psy2206 349 EY---FGI-DPREVDILMGTYTKSFGSMG---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 349 e~---~g~-~~~~~dIv~~TlSKa~G~~G---G~v~g-s~~li~~l~~~ 389 (430)
+. .+. ...+..+++.||||.||++| ||+++ ++++++.++..
T Consensus 257 s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~ 305 (447)
T PLN02607 257 EIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM 305 (447)
T ss_pred HHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH
Confidence 21 111 10234688999999999999 99987 67888877764
No 280
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=98.71 E-value=5.1e-08 Score=100.85 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=65.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++.++.+++|.+.+ +.+|+++|++|+++||+||+|+..+-......... .. .+..|+++||||. +++|
T Consensus 180 ~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~--~~--~~~vI~~~SfSK~-~~pG 254 (416)
T PRK09440 180 TGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP--LW--NPNIILCMSLSKL-GLPG 254 (416)
T ss_pred ceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc--cc--cCCeEEEeccccc-CCCc
Confidence 456777788999999988 78888899999999999999964211100000000 01 2346899999996 8888
Q ss_pred ---ceeecCHHHHHHHHhcC
Q psy2206 374 ---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 255 lRiG~~i~~~~l~~~~~~~~ 274 (416)
T PRK09440 255 VRCGIVIADEEIIEALSNMN 274 (416)
T ss_pred ceEEEEeCCHHHHHHHHHHH
Confidence 99999999999888754
No 281
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=98.70 E-value=6.9e-08 Score=98.57 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=64.2
Q ss_pred EEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 298 ILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++|++..+.+++|.+.+.+++.++++. .++++|+||+|.....+........... ...+..|+++||||+||++|
T Consensus 161 ~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~vi~i~SfSK~~~l~GlR 239 (371)
T PRK05166 161 RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLK-ARGLPWIVLRTFSKAYGLAGLR 239 (371)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHh-hcCCCEEEEeechHhhhcchhh
Confidence 467778899999999997777666653 4889999999976544322122111111 11123689999999999999
Q ss_pred -ceee-cCHHHHHHHHhcC
Q psy2206 374 -GYVA-GSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~-gs~~li~~l~~~~ 390 (430)
||++ +++++++.+....
T Consensus 240 iG~~i~~~~~l~~~~~~~~ 258 (371)
T PRK05166 240 VGYGLVSDPELVGLLDRVR 258 (371)
T ss_pred eeeeecCCHHHHHHHHHhc
Confidence 9965 5788988887643
No 282
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.68 E-value=1.1e-07 Score=96.40 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCC--CCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~~e~ 350 (430)
+++|++++.+. ...++++.+ .+++|.+.|+++|.++|++||+++++|+||+.++++-. |.+.. .
T Consensus 143 ~~~l~~~l~~~------------~~~vv~~~~-~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~-~ 208 (373)
T TIGR03812 143 VKDVEDLIDDN------------TIGIVGIAG-TTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPP-P 208 (373)
T ss_pred HHHHHHHHhhC------------cEEEEEECC-CCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCC-C
Confidence 67777777541 134555554 67899999999999999999999999999986653211 11110 0
Q ss_pred cCCCCCCccEEEeCccchh-cc--ccceeecCHHHHHHHHhcCCccccc-------CCCcHHHHHHHHHHHHHHHc
Q psy2206 351 FGIDPREVDILMGTYTKSF-GS--MGGYVAGSKSTIDYIRANSHVRSYA-------TSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~-G~--~GG~v~gs~~li~~l~~~~~~~~~s-------~s~~P~~~aaalaaL~~l~~ 416 (430)
..+....+|.+..+.+|.. +. .||+++.++++++.++.. .++++. .+.++..++++.++|+.+.+
T Consensus 209 ~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~ 283 (373)
T TIGR03812 209 FDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVD-APYLTVKKQATITGTRSGASAAATYAVIKYLGR 283 (373)
T ss_pred ccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhccc-CcccCCCCCcceEeechhHHHHHHHHHHHHhCH
Confidence 1111124577777888932 21 345677889998887542 233322 23455667777788887643
No 283
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.68 E-value=3.4e-08 Score=103.57 Aligned_cols=137 Identities=19% Similarity=0.271 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
....+.+.++|....-. ..+++|++++++ ++++|+++++.|++|.+.|+++|+++|++||+++|+
T Consensus 118 ~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~-------------~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIv 184 (431)
T PRK08248 118 NLFAHTLPKLGITVKFVDPSDPENFEAAITD-------------KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIV 184 (431)
T ss_pred HHHHHHHHhCCEEEEEECCCCHHHHHHhcCC-------------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 33445566667533211 125666666542 356888899999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhccc----cceeecCHHHH-----------------------H
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTI-----------------------D 384 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li-----------------------~ 384 (430)
|++++.+... ..+. ..+||++.|++|.+|.. ||+++.+.+.. +
T Consensus 185 D~t~a~~~~~---------~pl~-~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (431)
T PRK08248 185 DNTFASPYLL---------RPIE-HGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTD 254 (431)
T ss_pred eCCCCccccC---------ChhH-cCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhh
Confidence 9998754321 1111 35699999999999854 46666533210 0
Q ss_pred ---------HHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 385 ---------YIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 385 ---------~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..+... ....+..++|..|+.++..|+.+
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~G~~l~p~~a~l~~rgl~tl 292 (431)
T PRK08248 255 AVGEAAYITKARVQL-LRDLGAALSPFNSFLLLQGLETL 292 (431)
T ss_pred hhchhhHHHHHHHHH-HHhcCCCCCHHHHHHHhcCcCcH
Confidence 001001 12346789999999988887754
No 284
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=98.68 E-value=6.3e-08 Score=98.26 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=66.7
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhc-CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKY-KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y-~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+++|++..+.+++|.+.+.+++.++++.. +++||+||+|.... .. ......... .+..|+++||||+||++|
T Consensus 148 ~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~--~~-~s~~~~~~~--~~~~iv~~S~SK~~~l~GlR 222 (354)
T PRK04635 148 AKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFC--PE-YSVADLLAS--YPNLVVLRTLSKAFALAGAR 222 (354)
T ss_pred CCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhc--cC-cchHHHHhh--CCCEEEEechHHHhhhhHHH
Confidence 44677779999999999999999998764 79999999996432 11 111111111 123588999999999999
Q ss_pred -ceeecCHHHHHHHHhcC
Q psy2206 374 -GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 223 lG~~i~~~~~~~~l~~~~ 240 (354)
T PRK04635 223 CGFTLANEELIEILMRVI 240 (354)
T ss_pred HhhhhCCHHHHHHHHhhc
Confidence 99999999999887643
No 285
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=98.68 E-value=7e-08 Score=97.40 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=65.5
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---ce
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG---GY 375 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~ 375 (430)
+|++..+.+++|.+.+.++|.++++ +++++|+||+|..- .+ ......... .+..|+++||||+||++| ||
T Consensus 143 ~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~-~~---~~~~~~~~~--~~~vi~l~S~SK~~~l~GlRiG~ 215 (337)
T PRK03967 143 AVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEF-SG---KSLIGLIDE--YPNLILLRTFSKAFGLAGIRAGY 215 (337)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhh-cc---cchHHHHhh--CCCEEEEecchHhhcchhhhhee
Confidence 4556688999999999999999995 79999999999742 12 111111111 233689999999999999 99
Q ss_pred eecCHHHHHHHHhcC
Q psy2206 376 VAGSKSTIDYIRANS 390 (430)
Q Consensus 376 v~gs~~li~~l~~~~ 390 (430)
+++++++++.++...
T Consensus 216 iv~~~~~i~~~~~~~ 230 (337)
T PRK03967 216 AIANEEIIDALYRIK 230 (337)
T ss_pred eecCHHHHHHHHhhc
Confidence 999999999988754
No 286
>PRK14012 cysteine desulfurase; Provisional
Probab=98.66 E-value=4.6e-08 Score=100.97 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|.+ ++++|++..+.+++|.+.|+++|.++|++||++|++|++|++|... ..
T Consensus 134 ~~~l~~~i~~-------------~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~---------~~ 191 (404)
T PRK14012 134 LEKLEAAMRD-------------DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVP---------ID 191 (404)
T ss_pred HHHHHHhcCC-------------CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcc---------cC
Confidence 6777777643 3568999999999999999999999999999999999999876431 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKST 382 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~l 382 (430)
+....+|+++.|++|.+|..| |++..+++.
T Consensus 192 ~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~ 222 (404)
T PRK14012 192 LSKLKVDLMSFSAHKIYGPKGIGALYVRRKP 222 (404)
T ss_pred cccCCCCEEEEehhhccCCCceEEEEEecCC
Confidence 111246899999999888666 776666543
No 287
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=98.65 E-value=2.1e-07 Score=99.31 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=65.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceec---CCC--CCCccEEEeCccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYF---GID--PREVDILMGTYTK 367 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~---g~~--~~~~dIv~~TlSK 367 (430)
.++|++..+.+++|.+.+ +++|+++|++|+++||+||+|+.-+|... -..+.+.. ... ..+..+++.||||
T Consensus 200 ~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK 279 (496)
T PLN02376 200 VKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSK 279 (496)
T ss_pred eeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccc
Confidence 455666689999999998 77788899999999999999987666421 11222111 110 0123466899999
Q ss_pred hhcccc---ceeec-CHHHHHHHHhc
Q psy2206 368 SFGSMG---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 368 a~G~~G---G~v~g-s~~li~~l~~~ 389 (430)
.||++| ||+++ ++.+++.++..
T Consensus 280 ~~glpGlRvG~li~~~~~l~~~~~~~ 305 (496)
T PLN02376 280 DMGLPGFRVGIVYSFNDSVVSCARKM 305 (496)
T ss_pred cCCCCcceEEEEEECCHHHHHHHHHH
Confidence 999999 99998 56677766553
No 288
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=98.65 E-value=8.3e-08 Score=96.80 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
|+.+++.+++ ++++|.+|++-++.+++.|+++|.++|+++++.||||...+.+.+ +. +
T Consensus 137 ~~~~~~aI~~-------------nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-------~r--P 194 (426)
T COG2873 137 PENFEAAIDE-------------NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-------CR--P 194 (426)
T ss_pred HHHHHHHhCc-------------ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-------cc--h
Confidence 5777777654 678999999999999999999999999999999999999766543 21 2
Q ss_pred CCCCCccEEEeCccchhc----cccceee
Q psy2206 353 IDPREVDILMGTYTKSFG----SMGGYVA 377 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G----~~GG~v~ 377 (430)
++ ...|||+.|++|.+| ++||.|+
T Consensus 195 ~~-hGADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 195 IE-HGADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred hh-cCCCEEEEeecccccCCccccceEEE
Confidence 22 457999999999997 3567664
No 289
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.65 E-value=9.5e-08 Score=96.52 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=75.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.+.+++.+|+ +++++||+||+|..- .+. ........ .+..|+++||||+||++|
T Consensus 139 ~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f-~~~---~~~~~~~~--~~~vi~~~S~SK~~~l~GlRv 211 (335)
T PRK14808 139 GDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEF-HGE---SYVDLLKK--YENLAVIRTFSKAFSLAAQRI 211 (335)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhh-cCC---chHHHHHh--CCCEEEEEechhhccCcccce
Confidence 35788899999999999999999998 579999999999742 121 11111111 134789999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.+...... ++ .+.+...++.++++
T Consensus 212 G~~v~~~~~~~~l~~~~~~--~~--~~~~~q~a~~~~l~ 246 (335)
T PRK14808 212 GYVVSSEKFIDAYNRVRLP--FN--VSYVSQMFAKVALD 246 (335)
T ss_pred EEEEeCHHHHHHHHHhcCC--CC--CCHHHHHHHHHHHh
Confidence 9999999999999775422 22 23333344455554
No 290
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=98.65 E-value=2.5e-08 Score=102.81 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=42.4
Q ss_pred ceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 95 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 95 ~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
++++||+|||||||+ .||.+++|+++++++||+|+++||...|+.
T Consensus 45 ~~~~~~~sn~ylgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~ 89 (402)
T TIGR01821 45 KDVTVWCSNDYLGMG-QHPEVLQAMHETLDKYGAGAGGTRNISGTN 89 (402)
T ss_pred eeEEEeEccCcCCCC-CCHHHHHHHHHHHHHcCCCCcchhhhhCCc
Confidence 589999999999999 699999999999999999999999988866
No 291
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.64 E-value=2.2e-07 Score=95.11 Aligned_cols=93 Identities=16% Similarity=0.287 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||+++.+. .+.++++.+..++.|.+.|+++|.++|++||++|++|+||+..+ .... .+
T Consensus 138 ~~~le~ai~~~------------t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-----~~~~-~~- 198 (363)
T TIGR01437 138 AEQLEAAITEK------------TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-----QKYY-RL- 198 (363)
T ss_pred HHHHHHhcChh------------ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-----HHHH-Hc-
Confidence 78888887541 23355566666778999999999999999999999999997321 1000 11
Q ss_pred CCCCCccEEEeCccchhc-cccceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~ 388 (430)
..|+++.|++|.++ ..+|++++++++++.++.
T Consensus 199 ----g~D~~~~S~~K~l~gp~~G~l~~~~~~i~~~~~ 231 (363)
T TIGR01437 199 ----GADLVIYSGAKAIEGPTSGLVLGKKKYIEWVKL 231 (363)
T ss_pred ----CCCEEEEeCCcccCCCceEEEEEcHHHHHHHHh
Confidence 35899999999884 458999999999988754
No 292
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.62 E-value=9.4e-08 Score=84.53 Aligned_cols=77 Identities=30% Similarity=0.374 Sum_probs=61.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++.+|+++.++++.|...|+++|.++|+++|+++++||+|+.+.....+ +......+|+++.|++|.||.+| |
T Consensus 92 ~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~------~~~~~~~~d~~~~s~~K~~~~~~~G 165 (170)
T cd01494 92 NVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG------VLIPEGGADVVTFSLHKNLGGEGGG 165 (170)
T ss_pred ceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccc------cccccccCCEEEEEcccccCCCceE
Confidence 5678999999999999999999999999999999999999876553211 11222357999999999998765 7
Q ss_pred eeec
Q psy2206 375 YVAG 378 (430)
Q Consensus 375 ~v~g 378 (430)
+++.
T Consensus 166 ~l~~ 169 (170)
T cd01494 166 VVIV 169 (170)
T ss_pred EEEe
Confidence 7764
No 293
>KOG1405|consensus
Probab=98.62 E-value=1.2e-07 Score=95.05 Aligned_cols=130 Identities=25% Similarity=0.295 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCccc--C--HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIV--R--LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~--~--L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
.+++|.+|.+... +....+.||+|+|.|..||-. | +..|++++++|++.+||||++. | -|.+|.-++
T Consensus 255 l~~Ve~li~~~~~-------k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQT-G-gGaTGk~Wa 325 (484)
T KOG1405|consen 255 LAEVEDLIVKYRK-------KKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQT-G-GGATGKFWA 325 (484)
T ss_pred HHHHHHHHHHHhh-------cCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeec-C-CCccCceee
Confidence 3778888877531 112467899999999999754 2 9999999999999999999985 5 377887666
Q ss_pred -eecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCC-cHHHHHHHHHHHHHHHccCCc
Q psy2206 349 -EYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSM-PPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~-~P~~~aaalaaL~~l~~~~~~ 420 (430)
|+|+++ ...|+| ||||-| ..|||.... ++ +....--+|.|-+ -|.-+....+.+++|++++-.
T Consensus 326 Hehw~l~-~PpD~v--TFSKK~-q~gGffh~~-~f----rpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll 390 (484)
T KOG1405|consen 326 HEHWNLD-SPPDVV--TFSKKF-QTGGFFHDE-EF----RPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLL 390 (484)
T ss_pred ehhcCCC-CCccce--ehhhhh-hcCccccCc-cc----CCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHH
Confidence 899987 467888 999998 356677543 22 2221111233223 455555556777888776543
No 294
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=98.62 E-value=9e-08 Score=98.58 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC--CCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~ 347 (430)
+++|++.+++. +.+++++++.++.+++|.+.+ +.+|+++|++||+++|.||+|..-.++.. -..+
T Consensus 159 ~~~l~~~~~~~----------~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~ 228 (396)
T PRK09257 159 FDAMLADLSQA----------PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGL 228 (396)
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHH
Confidence 56777776642 113578888999999999987 88889999999999999999975333200 0111
Q ss_pred ceecCCCCCCccEEEeCccchhcccc---ceee
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSMG---GYVA 377 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~ 377 (430)
....+. .+..|+++||||+|+++| ||++
T Consensus 229 ~~~~~~--~~~vi~i~SfSK~~~~~GlRiG~~~ 259 (396)
T PRK09257 229 RAFAAA--GLELLVASSFSKNFGLYGERVGALS 259 (396)
T ss_pred HHHHhc--CCcEEEEEEcCCcCccccccceeEE
Confidence 111111 234689999999999988 9986
No 295
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.62 E-value=1.1e-07 Score=97.05 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|.. ...
T Consensus 126 ~~~l~~~i~~-------------~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~---------~~~ 183 (379)
T TIGR03402 126 LEELRAAITD-------------DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI---------PID 183 (379)
T ss_pred HHHHHHhcCC-------------CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECccccccc---------ccC
Confidence 5777776643 356888899999999999999999999999999999999986532 112
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC------CcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS------HVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~------~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+....+|+++.|.+|.+|..| |++..+++.. +.... ... ...+.+.+...+..++++.+.+
T Consensus 184 ~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~~--~~p~~~g~~~~~~~-~~gt~~~~~~~~l~~al~~~~~ 251 (379)
T TIGR03402 184 LKEMNIDMLSLSGHKLHGPKGVGALYIRKGTR--FRPLLRGGHQERGR-RAGTENVPGIVGLGKAAELATE 251 (379)
T ss_pred cccCCCCEEEEcHHHcCCCCceEEEEECCCCC--CCCcccCCccCCCc-CCCCccHHHHHHHHHHHHHHHH
Confidence 222357899899999767666 7766665431 11100 011 1233455556666777777643
No 296
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.61 E-value=1.8e-07 Score=95.64 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=59.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ce
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GY 375 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~ 375 (430)
+++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|.+- ..+....+|+++.|++|.+|.+| |+
T Consensus 141 t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~g~ 211 (382)
T TIGR03403 141 TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIP---------VDVQKAGVDFLSFSAHKFHGPKGVGG 211 (382)
T ss_pred CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCc---------cCccccCCCEEEEcchhhCCCCceEE
Confidence 568888999999999999999999999999999999999865321 12222357899999999888776 66
Q ss_pred eecCH
Q psy2206 376 VAGSK 380 (430)
Q Consensus 376 v~gs~ 380 (430)
+..++
T Consensus 212 l~vr~ 216 (382)
T TIGR03403 212 LYIRK 216 (382)
T ss_pred EEECC
Confidence 65443
No 297
>PRK09105 putative aminotransferase; Provisional
Probab=98.60 E-value=1.6e-07 Score=96.28 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=65.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+++|++.++.+++|.+.+.++|.++++. ++++||+||+|.. |+. +.......+. .+..|+++||||+||++|
T Consensus 166 ~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~--f~~-~~s~~~~~~~--~~~vi~~~SfSK~~g~~Gl 240 (370)
T PRK09105 166 AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIH--FSD-APSVVDLVAQ--RKDLIVLRTFSKLYGMAGM 240 (370)
T ss_pred CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHH--hcc-CcchHHHHhh--CCCEEEEecccHhhcCCcc
Confidence 4466677789999999998888887754 4899999999953 322 1111221111 233688899999999999
Q ss_pred --ceeecCHHHHHHHHhc
Q psy2206 374 --GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~ 389 (430)
||+++++++++.+...
T Consensus 241 RiG~~v~~~~~i~~l~~~ 258 (370)
T PRK09105 241 RLGLAAARPDLLAKLARF 258 (370)
T ss_pred ceeeeecCHHHHHHHHhc
Confidence 9999999999988764
No 298
>PLN02231 alanine transaminase
Probab=98.59 E-value=3.8e-07 Score=98.14 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC--cc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR--GV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr--G~ 347 (430)
+++|++.+++.... ..++++|++-.+.+++|.+.+ +.+|+++|++||++||.||+|..-++..... .+
T Consensus 255 ~~~Le~~l~~~~~~-------~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~ 327 (534)
T PLN02231 255 ISELKKQLEDARSK-------GITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSF 327 (534)
T ss_pred HHHHHHHHHHHhhc-------CCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccH
Confidence 67888888653211 013445555678999999986 8888999999999999999998776632111 11
Q ss_pred cee---cCCCCCC-ccEEEeCccchh-cccc---ceeec---CHHHHHHHHhcC
Q psy2206 348 TEY---FGIDPRE-VDILMGTYTKSF-GSMG---GYVAG---SKSTIDYIRANS 390 (430)
Q Consensus 348 ~e~---~g~~~~~-~dIv~~TlSKa~-G~~G---G~v~g---s~~li~~l~~~~ 390 (430)
... .+....+ ..|.++||||.+ |++| ||+.+ ++++++.+....
T Consensus 328 ~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~ 381 (534)
T PLN02231 328 KKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVA 381 (534)
T ss_pred HHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHH
Confidence 111 1211111 358899999986 7777 99875 789998887643
No 299
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=98.59 E-value=4.7e-08 Score=101.04 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=51.9
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
+++.+.+|+++.+.-. ..+..+++|||+|||||||+ +||++++++++++++||+++++||...|+.
T Consensus 24 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sn~ylgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~ 89 (406)
T PRK13393 24 ADLERQAGAFPRATHH----------GPDGPREVTVWCSNDYLGMG-QHPAVLAAMHEALDTCGAGAGGTRNISGTN 89 (406)
T ss_pred eeccccCCCcceeEEe----------ccCCCccEEEeecccccCCC-CCHHHHHHHHHHHHHcCCCCcccccccCCh
Confidence 7787777765432100 00123589999999999999 699999999999999999999999988865
No 300
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=98.58 E-value=2.9e-07 Score=94.14 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH-hcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN-KYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~-~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++++.. ..+.++|++.++.+++|.+.+.+++.++.+ .++++||+||+|..-. + .......
T Consensus 154 ~~~l~~~~~~~~---------~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~-~---~~~~~~~ 220 (374)
T PRK02610 154 LAAAQSAIEQTQ---------NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFS-Q---TTLVGEL 220 (374)
T ss_pred HHHHHHHHHhhc---------CCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccC-c---cchHHHH
Confidence 577777775410 013445555578999999998666666553 2489999999996422 1 1111111
Q ss_pred CCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
......|+++||||+||++| ||+++++++++.+....
T Consensus 221 --~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~ 260 (374)
T PRK02610 221 --AQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR 260 (374)
T ss_pred --hcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhc
Confidence 11123578999999999999 99999999999988754
No 301
>PRK07908 hypothetical protein; Provisional
Probab=98.58 E-value=2.7e-07 Score=93.29 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=67.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.+.++|.++|++ +.++|+||+|+.-+.+. -..+.. ... +..|+++||||.+|++|
T Consensus 140 ~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~-~~~l~~---~~~-~~~i~i~S~SK~~~l~GlRi 213 (349)
T PRK07908 140 ADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGE-PESLAG---DDL-PGVLVLRSLTKTWSLAGLRV 213 (349)
T ss_pred CCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCC-cccccc---ccC-CCEEEEeecccccCCcccee
Confidence 3477778899999999999999999975 77899999997533221 111111 121 23688999999999888
Q ss_pred ceeecCHHHHHHHHhcCC
Q psy2206 374 GYVAGSKSTIDYIRANSH 391 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~ 391 (430)
||+++++++++.++....
T Consensus 214 G~~~~~~~~~~~~~~~~~ 231 (349)
T PRK07908 214 GYALGAPDVLARLTRGRA 231 (349)
T ss_pred eeeecCHHHHHHHHhcCC
Confidence 999999999999887543
No 302
>PRK06836 aspartate aminotransferase; Provisional
Probab=98.58 E-value=2.7e-07 Score=95.05 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHh------cCcEEEEeccccccccCCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNK------YKAYLYVDEAHSIGALGPT 343 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~------y~~~LivDEAh~~G~lG~~ 343 (430)
+++|++++.+ ++++|++..+.+++|.+.| +.+|+++|++ ||+++|+||+|..-.++.
T Consensus 158 ~~~l~~~~~~-------------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~- 223 (394)
T PRK06836 158 LDALEAAITP-------------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDG- 223 (394)
T ss_pred HHHHHhhcCc-------------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCC-
Confidence 5677776643 2445666678999999987 7777777888 899999999997544432
Q ss_pred CCccceecCCCCCCccEEEeCccchhcccc---ceeecCHHHHH
Q psy2206 344 GRGVTEYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTID 384 (430)
Q Consensus 344 GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~ 384 (430)
......... .+.+|+++||||.||++| ||+++++++.+
T Consensus 224 -~~~~~~~~~--~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~ 264 (394)
T PRK06836 224 -AEVPYIFKY--YDNSIVVYSFSKSLSLPGERIGYIAVNPEMED 264 (394)
T ss_pred -CCCCChHHc--cCcEEEEecchhhccCcceeeEEEecCHHHhh
Confidence 111111111 134799999999999888 99999887754
No 303
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.55 E-value=4.9e-07 Score=95.65 Aligned_cols=136 Identities=15% Similarity=0.045 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC-cccC---HHHHHHHHHhcCcEEEEecccccc-c-cCC----
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG-SIVR---LPEIVRLKNKYKAYLYVDEAHSIG-A-LGP---- 342 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G-~i~~---L~~I~~La~~y~~~LivDEAh~~G-~-lG~---- 342 (430)
+++||+++.+. .+.++++|+++.+.+++| .+.+ |++|.++|++||++||+|++|..+ . |+.
T Consensus 163 ~e~Le~~i~~~---------~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~ 233 (460)
T PRK13238 163 LEKLEALIEEV---------GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREP 233 (460)
T ss_pred HHHHHHHHhhc---------CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccc
Confidence 67788887652 123578899999999987 5554 789999999999999999988532 2 221
Q ss_pred --CCCccceecCCCCCCccEEEeCccchh-ccccceeecC-HHHHHHHHhcC---CcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 343 --TGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGS-KSTIDYIRANS---HVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 343 --~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~v~gs-~~li~~l~~~~---~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
.+..+.+..-....-.|++..|..|.. +..||+++++ +++++.++... .+++..+++++...+|+..+|+-..
T Consensus 234 g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~ 313 (460)
T PRK13238 234 GYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM 313 (460)
T ss_pred cccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh
Confidence 111111110000012367777777754 4458999887 68888887653 2343334444443444444554433
Q ss_pred cc
Q psy2206 416 GL 417 (430)
Q Consensus 416 ~~ 417 (430)
++
T Consensus 314 ~~ 315 (460)
T PRK13238 314 DE 315 (460)
T ss_pred Ch
Confidence 33
No 304
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.54 E-value=1.3e-07 Score=99.32 Aligned_cols=101 Identities=18% Similarity=0.309 Sum_probs=72.6
Q ss_pred HHHHHHHhCCCCCC---CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEe
Q psy2206 256 SKESVKQSGCALCS---PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332 (430)
Q Consensus 256 ~~~ai~~yG~g~~~---sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivD 332 (430)
..+.+.++|....- +..+++|+++|++ ++++|++|.+.+++|.+.|+++|.++|+++|+++++|
T Consensus 125 ~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~-------------~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD 191 (437)
T PRK05613 125 FLVTLNRLGIEVTFVENPDDPESWQAAVQP-------------NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVD 191 (437)
T ss_pred HHHHHHhcCeEEEEECCCCCHHHHHHhCCc-------------cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEE
Confidence 34456667754321 1125666666543 3567889999999999999999999999999999999
Q ss_pred ccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecC
Q psy2206 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGS 379 (430)
Q Consensus 333 EAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs 379 (430)
.+|+.|.+- .++. ..+|+++.|++|.++. .||+++.+
T Consensus 192 ~t~a~g~~~---------~p~~-~GaDivv~S~~K~l~G~gd~~gG~vv~~ 232 (437)
T PRK05613 192 NTIATAALV---------RPLE-LGADVVVASLTKFYTGNGSGLGGVLIDG 232 (437)
T ss_pred CCCcccccc---------ChHH-hCCCEEEeeccceecCCCcceeEEEEec
Confidence 999776431 1111 2469999999999974 36877753
No 305
>PLN02672 methionine S-methyltransferase
Probab=98.48 E-value=8.2e-07 Score=101.52 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=64.1
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc---c---ceecC-CCCCCccEEEeCccc
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG---V---TEYFG-IDPREVDILMGTYTK 367 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG---~---~e~~g-~~~~~~dIv~~TlSK 367 (430)
.++++.+-+||+|.+.+ +.+|+++|++||++||+||+|+.-.|...... + ...+. ..+....|+++||||
T Consensus 831 ~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSK 910 (1082)
T PLN02672 831 WVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLST 910 (1082)
T ss_pred EEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHH
Confidence 34444443599999887 78888889999999999999985556422110 1 11111 001124689999999
Q ss_pred hhcccc---ceeecC-HHHHHHHHhc
Q psy2206 368 SFGSMG---GYVAGS-KSTIDYIRAN 389 (430)
Q Consensus 368 a~G~~G---G~v~gs-~~li~~l~~~ 389 (430)
.++++| ||++++ +++++.++..
T Consensus 911 kf~lpGLRIGylIap~~eLi~~l~~~ 936 (1082)
T PLN02672 911 ELLSGGHEFGFLALNDSVLIDAFHSA 936 (1082)
T ss_pred hhccHHHHheeEEeCCHHHHHHHHHh
Confidence 999999 999986 5589888763
No 306
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.5e-07 Score=93.23 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCCCC-------CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH
Q psy2206 251 LCTERSKESVKQSGCALC-------SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN 323 (430)
Q Consensus 251 ~v~~a~~~ai~~yG~g~~-------~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~ 323 (430)
...-...+..++.|.-.- +.-..+++++++.+ ++++|.+..+.+.+|.+.|+++|+++|+
T Consensus 123 sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~-------------~Tklvais~vSn~tG~~~pv~~I~~la~ 189 (405)
T COG0520 123 SNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP-------------KTKLVALSHVSNVTGTVNPVKEIAELAH 189 (405)
T ss_pred hhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCC-------------CceEEEEECccccccccchHHHHHHHHH
Confidence 345566777777675211 11114667765432 6789999999999999999999999999
Q ss_pred hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccc-hhcccc-ceeecCHHHHHHH
Q psy2206 324 KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTK-SFGSMG-GYVAGSKSTIDYI 386 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSK-a~G~~G-G~v~gs~~li~~l 386 (430)
+||++++||=||++|.+- ..+...++|+++.|-.| -+|..| |++.+++++.+.+
T Consensus 190 ~~ga~v~VDaaq~~~h~~---------idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l 245 (405)
T COG0520 190 EHGALVLVDAAQAAGHLP---------IDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEEL 245 (405)
T ss_pred HcCCEEEEECccccCccC---------CCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhc
Confidence 999999999999877431 22333467999999999 556657 9999999999877
No 307
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.46 E-value=4.7e-07 Score=95.07 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=71.9
Q ss_pred HHHHHHhCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecc
Q psy2206 257 KESVKQSGCALC--SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334 (430)
Q Consensus 257 ~~ai~~yG~g~~--~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEA 334 (430)
...+.++|.... -...+++|+++|.+ ++++|+++.+.++.|.+.|+++|.++|++||+++|+|.+
T Consensus 121 ~~~l~~~Gi~v~~vd~~d~~~l~~~i~~-------------~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 121 HYTLRRFGIETTFVKPGDIDGWRAAIRP-------------NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred HHHHhhCCeEEEEECCCCHHHHHHhcCC-------------CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 334556675322 11236677776653 467899999999999999999999999999999999999
Q ss_pred ccccccCCCCCccceecCCCCCCccEEEeCccchhcccc----ceee
Q psy2206 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG----GYVA 377 (430)
Q Consensus 335 h~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G----G~v~ 377 (430)
|+.+.+.. .+. ..+|+++.|.+|.+|..| |+++
T Consensus 188 ~a~~~~~~---------pl~-~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 188 FTTPYLLR---------PFE-HGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred CcccccCC---------chh-cCCCEEEeccccccCCCCCceEEEEE
Confidence 98775421 121 256999999999997544 6554
No 308
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=98.44 E-value=1.2e-06 Score=92.52 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHh
Q psy2206 254 ERSKESVKQSGCALCSPSA------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNK 324 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~sr~------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~ 324 (430)
..+..+++.+|...-.-.. +++||+.++... -+.++++.+..+++|.+.+ -++|+++|++
T Consensus 190 ~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~-----------~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~ 258 (459)
T COG1167 190 PGALQALEALGARVIPVPVDEDGIDPEALEEALAQWK-----------PKAVYVTPTFQNPTGVTMSLERRKALLALAEK 258 (459)
T ss_pred HHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcC-----------CcEEEECCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 3455566667764332222 899999988631 2567888888999999888 5789999999
Q ss_pred cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcC
Q psy2206 325 YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANS 390 (430)
Q Consensus 325 y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~ 390 (430)
||+++|=||.|+...+.. .-.....+.+..+..|.++||||++. .=-||+++++++++.+....
T Consensus 259 ~~~~IIEDD~y~el~~~~--~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k 324 (459)
T COG1167 259 YDVLIIEDDYYGELRYDG--PPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLK 324 (459)
T ss_pred cCCeEEeeCcchhhhcCC--CCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHH
Confidence 999999999998765542 22211223333467899999999994 23399999999999888754
No 309
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=98.43 E-value=8.6e-07 Score=89.78 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+... ++++|++..+.+++|.+.+.+++.++++..++++|+||+|.. +.. ......
T Consensus 142 ~~~l~~~~~~~------------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~--~~~--~~~~~~-- 203 (356)
T PRK04870 142 LPAMLAAIAEH------------RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQP--FAG--DSWLPR-- 203 (356)
T ss_pred HHHHHHHhhcC------------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchh--hcC--cchHHH--
Confidence 56777776531 234555567899999999988888888777899999999963 221 111111
Q ss_pred CCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 353 IDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
+...+..|+++|||| +|++| ||+++++++++.++...
T Consensus 204 ~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~ 243 (356)
T PRK04870 204 LARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR 243 (356)
T ss_pred HhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc
Confidence 111234699999999 89888 99999999999888644
No 310
>PRK08637 hypothetical protein; Provisional
Probab=98.43 E-value=9.2e-07 Score=90.94 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHh-----cCcEEEEeccccccccCCCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNK-----YKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~-----y~~~LivDEAh~~G~lG~~G 344 (430)
+++|++.++... ...+.++++.++.+|+|.+.+ +++|+++|++ |+++||+||+|..-++....
T Consensus 132 ~~~l~~~~~~~~---------~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~ 202 (388)
T PRK08637 132 TDALKEALQAAY---------NKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSY 202 (388)
T ss_pred HHHHHHHHHhhc---------cCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCcc
Confidence 577777776210 113567888999999998887 6677776664 99999999999755553211
Q ss_pred C-cccee-cCCCCCCc-cEEEeCccchhcccc---ceeec------CHHHHHHHHh
Q psy2206 345 R-GVTEY-FGIDPREV-DILMGTYTKSFGSMG---GYVAG------SKSTIDYIRA 388 (430)
Q Consensus 345 r-G~~e~-~g~~~~~~-dIv~~TlSKa~G~~G---G~v~g------s~~li~~l~~ 388 (430)
. .+... .+.. ..+ .|.++||||.++++| ||++. ++++++.+..
T Consensus 203 ~~~~~~~~~~~~-~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~ 257 (388)
T PRK08637 203 KESLFAALANLH-SNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEK 257 (388)
T ss_pred chhhHHHhhccc-ccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHH
Confidence 1 11111 1221 122 345579999999999 99874 4688877754
No 311
>PRK09064 5-aminolevulinate synthase; Validated
Probab=98.42 E-value=2.5e-07 Score=95.45 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=42.6
Q ss_pred cceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 94 ESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 94 ~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.+++|||+|||||||+ .||.+++++.+++++||.+++|||...|+.
T Consensus 45 ~~~~~~~~s~dylgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~ 90 (407)
T PRK09064 45 EREVTVWCSNDYLGMG-QHPKVIEAMIEALDRCGAGAGGTRNISGTN 90 (407)
T ss_pred CceEEEEECCCCcCCC-CCHHHHHHHHHHHHHcCCCCCCcCcCccCH
Confidence 4689999999999999 599999999999999999999999988755
No 312
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=98.40 E-value=1.6e-06 Score=86.97 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=69.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhcc-cc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGS-MG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~-~G 373 (430)
+++|++.. +.|.+.|+++|+++|++||++||+|++|+.|.... +. ..+. ..|+.+.||+ |.++. .|
T Consensus 107 ~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~-~~----~~~~---~~d~~~~S~~~~K~~~~~~g 175 (352)
T cd00616 107 TKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYK-GR----KVGT---FGDAGAFSFHPTKNLTTGEG 175 (352)
T ss_pred CeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeEC-CE----Eccc---CcceeEEcCCCCCCCcccCc
Confidence 34455443 57999999999999999999999999999775421 11 1121 1267777877 99953 56
Q ss_pred ceeecC-HHHHHHHHhc---CCc----------ccccCCCcHHHHHHHHHHHHHH
Q psy2206 374 GYVAGS-KSTIDYIRAN---SHV----------RSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 374 G~v~gs-~~li~~l~~~---~~~----------~~~s~s~~P~~~aaalaaL~~l 414 (430)
|+++.+ +++++.++.. ... ..+...+++..++.++..++.+
T Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~ 230 (352)
T cd00616 176 GAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL 230 (352)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh
Confidence 777664 6777655431 111 1123456777777766655544
No 313
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=98.40 E-value=5.7e-07 Score=93.07 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=62.8
Q ss_pred eeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccC
Q psy2206 235 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFS 307 (430)
Q Consensus 235 lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~s 307 (430)
|||+|||||||++|| ++++++++++++||+++|+||. ..+||+.+.+.. +. ...++++
T Consensus 1 ~~f~s~dyLgl~~~~-~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~--g~-------e~al~~~----- 65 (392)
T PLN03227 1 LNFATHDFLSTSSSP-TLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL--GT-------ESAILYS----- 65 (392)
T ss_pred CCCcCcCccCCCCCH-HHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh--CC-------CcEEEec-----
Confidence 699999999999986 8999999999999999999998 378999887742 11 1334443
Q ss_pred CCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 308 MDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 308 m~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
.|..+.+..|..+++.-+.+|+-|.+|.
T Consensus 66 -sG~~a~~~~i~~l~~~GD~Vl~~~~~h~ 93 (392)
T PLN03227 66 -DGASTTSSTVAAFAKRGDLLVVDRGVNE 93 (392)
T ss_pred -CcHHHHHHHHHHhCCCCCEEEEeccccH
Confidence 3444555666667766665555555664
No 314
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.39 E-value=7.6e-07 Score=89.14 Aligned_cols=95 Identities=31% Similarity=0.256 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC-CCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP-TGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~-~GrG~~e~~ 351 (430)
+++|++++.+....+ .++++|++..+.+++|.+.|+++|.++|++||++|++|+||+.+++.- ...+. ..
T Consensus 132 ~~~l~~~i~~~~~~~-------~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~ 202 (345)
T cd06450 132 PEALEAAIDEDKAEG-------LNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DF 202 (345)
T ss_pred HHHHHHHHHHHHHCC-------CCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hc
Confidence 788998887632111 134566667778889999999999999999999999999998876531 11111 11
Q ss_pred CCCCCCccEEEeCccchhcccc--ceeec
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG--GYVAG 378 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G--G~v~g 378 (430)
++ ..+|.++.|++|.++.+. |++..
T Consensus 203 ~~--~~~d~~~~s~~K~l~~p~g~g~~~~ 229 (345)
T cd06450 203 GI--ERVDSISVDPHKYGLVPLGCSAVLV 229 (345)
T ss_pred Cc--cccCEEEEchhHhhCCCcchHHHHH
Confidence 12 257888899999876543 55533
No 315
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.37 E-value=3.5e-06 Score=88.71 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||++|.+.. +..+.+|++.+-+...|...|+++|.++|++||++|++|+||+.+.. .-....+ .+
T Consensus 191 ~e~Le~aIt~~~---------~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~--~~~~~~~-~g 258 (444)
T TIGR03531 191 VEDIERAIEEIG---------PDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN--KYMELIN-KA 258 (444)
T ss_pred HHHHHHHHHhcc---------CCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh--hhhhhhh-cc
Confidence 788999887520 12345555555444456888999999999999999999999985431 0000000 12
Q ss_pred CCCCCccEEEeCccchhcccc--ceeec-CHHHHHHHHhc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~g-s~~li~~l~~~ 389 (430)
.....+|+++.+++|.+.++| |+++. ++++++.++..
T Consensus 259 ~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~ 298 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKS 298 (444)
T ss_pred ccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHh
Confidence 211136899999999998743 55545 78888888763
No 316
>PLN02822 serine palmitoyltransferase
Probab=98.37 E-value=4.3e-07 Score=96.54 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=53.3
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.+.+.+|++|.+.+| ++|||+|+|||||. .+|.+++++.+++++||+|+||||..+|+.
T Consensus 95 ~~~~~~G~~i~~~G~----------------~~id~~s~~~lgl~-~~~~i~ea~~~al~~~G~g~~g~r~~yg~~ 153 (481)
T PLN02822 95 VLESAAGPHTIINGK----------------DVVNFASANYLGLI-GNEKIKESCTSALEKYGVGSCGPRGFYGTI 153 (481)
T ss_pred ceecCCCCeEEECCc----------------eEEEeECCCcCCCC-CCHHHHHHHHHHHHHhCCCCcccCccccCH
Confidence 567888999887554 89999999999999 599999999999999999999999988876
No 317
>PRK04311 selenocysteine synthase; Provisional
Probab=98.36 E-value=2.1e-06 Score=90.94 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc--cCCCC--cccCHHHHHHHHHhcCcEEEEeccccccccCCCC-Ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGI--FSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v--~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~ 347 (430)
+++++++|.+ ++++|+++.+ |+|+| ...|+++|+++|++||+++|+|.++ |++++.+ .|+
T Consensus 206 ~~dle~aI~~-------------~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl 270 (464)
T PRK04311 206 LRDYEQAINE-------------NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGL 270 (464)
T ss_pred HHHHHHhcCc-------------cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccC
Confidence 6788877754 2445555555 44667 5789999999999999999999964 4454322 111
Q ss_pred ceecCC---CCCCccEEEeCccchhc-cccceeecCHHHHHHHHh
Q psy2206 348 TEYFGI---DPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 348 ~e~~g~---~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~ 388 (430)
.....+ ....+|+++.|.+|.+| ..+|++++++++++.++.
T Consensus 271 ~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~~l~~ 315 (464)
T PRK04311 271 PDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIARLKK 315 (464)
T ss_pred CCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHHHHhh
Confidence 111110 01357999999999996 557999999999988774
No 318
>PLN02271 serine hydroxymethyltransferase
Probab=98.36 E-value=3.3e-06 Score=90.41 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC-ccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG-IFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~-v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++|++++... ++++||+.+ .|+ ...|+++|+++|+++|++|++|-||..|.+.. |....
T Consensus 287 yd~lek~a~~~------------rPKLII~g~Sayp---r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~---g~~~s- 347 (586)
T PLN02271 287 YDKLEEKALDF------------RPKILICGGSSYP---REWDYARFRQIADKCGAVLMCDMAHISGLVAA---KECVN- 347 (586)
T ss_pred HHHHHHHhhhc------------CCeEEEECchhcc---CcCCHHHHHHHHHHcCCEEEEECccccccccc---CcCCC-
Confidence 67787755431 456788877 444 55789999999999999999999999998742 22111
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK 380 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~ 380 (430)
++ ..+||+++|.+|++ |..||+|..++
T Consensus 348 P~--~~aDvvt~TTHKtLrGPrGG~I~~r~ 375 (586)
T PLN02271 348 PF--DYCDIVTSTTHKSLRGPRGGIIFYRK 375 (586)
T ss_pred CC--cCCcEEEeCCcccCCCCCceEEEecc
Confidence 12 35799999999999 77888888765
No 319
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.35 E-value=7.9e-07 Score=93.27 Aligned_cols=128 Identities=19% Similarity=0.131 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCC-CcccC---HHHHHHHHHhcCcEEEEecccccc--cc------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMD-GSIVR---LPEIVRLKNKYKAYLYVDEAHSIG--AL------ 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~-G~i~~---L~~I~~La~~y~~~LivDEAh~~G--~l------ 340 (430)
+++||+++.+. ...++++|+++.+.++. |.+.+ |++|.++|++||++||.|+||..+ ++
T Consensus 138 ~e~Le~~I~~~---------~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~ 208 (431)
T cd00617 138 VAKLEKLIDEV---------GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREE 208 (431)
T ss_pred HHHHHHHhCcc---------cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccc
Confidence 67788877641 01245678888777775 88775 668899999999999999998653 11
Q ss_pred CCCCCccce----ecCCCCCCccEEEeCccchhcc-ccceeecCH-HHHHHHHhcC---CcccccCCCcHHHHHHHHHHH
Q psy2206 341 GPTGRGVTE----YFGIDPREVDILMGTYTKSFGS-MGGYVAGSK-STIDYIRANS---HVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 341 G~~GrG~~e----~~g~~~~~~dIv~~TlSKa~G~-~GG~v~gs~-~li~~l~~~~---~~~~~s~s~~P~~~aaalaaL 411 (430)
|..+..+.+ .+. -.|....|+.|.++. .||+++++. ++++.++... .++.....+++...+++..+|
T Consensus 209 g~~~~si~ei~~e~~s----~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL 284 (431)
T cd00617 209 GYRDKSIAEIAREMFS----YADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGL 284 (431)
T ss_pred cccCCCHHHHHHHhhc----cCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHH
Confidence 111111111 111 125555566665443 489999986 6999888532 233334456666666544355
Q ss_pred HH
Q psy2206 412 RI 413 (430)
Q Consensus 412 ~~ 413 (430)
+-
T Consensus 285 ~e 286 (431)
T cd00617 285 RE 286 (431)
T ss_pred Hh
Confidence 43
No 320
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=98.32 E-value=1.2e-05 Score=82.74 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhCCC-------CCCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHh
Q psy2206 252 CTERSKESVKQSGCA-------LCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNK 324 (430)
Q Consensus 252 v~~a~~~ai~~yG~g-------~~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~ 324 (430)
+=+...+.+++||.. .+-+-.|+++++.|++. + ...+|.+=..=..+|.+.||++|.++|++
T Consensus 91 FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~----------~-~~~~V~~vH~ETSTGvlnpl~~I~~~~k~ 159 (383)
T COG0075 91 FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD----------P-DIKAVAVVHNETSTGVLNPLKEIAKAAKE 159 (383)
T ss_pred HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC----------C-CccEEEEEeccCcccccCcHHHHHHHHHH
Confidence 456677788888863 33344489999999863 1 12233333333448999999999999999
Q ss_pred cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc-cc-ceeecCHHHHHHHHhcCCc-c--------
Q psy2206 325 YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS-MG-GYVAGSKSTIDYIRANSHV-R-------- 393 (430)
Q Consensus 325 y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~~li~~l~~~~~~-~-------- 393 (430)
||+++|||=+-++|. +.+.++...+|++++.--|++++ +| |+++.|+...+.+....++ +
T Consensus 160 ~g~l~iVDaVsS~Gg---------~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~ 230 (383)
T COG0075 160 HGALLIVDAVSSLGG---------EPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWL 230 (383)
T ss_pred cCCEEEEEecccCCC---------cccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHH
Confidence 999999999877553 22334444679999999999975 56 7888888887777654322 1
Q ss_pred -------cccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 394 -------SYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 394 -------~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.|-.++|.....+..++|+.+++|
T Consensus 231 ~~~~~~~~~p~Tppv~~i~aL~~al~~i~~E 261 (383)
T COG0075 231 KYMEKKGSTPYTPPVNLIYALREALDLILEE 261 (383)
T ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 122234555566678899999877
No 321
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.30 E-value=1e-06 Score=90.13 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhhcccCCcccCCCCCEEEE-eccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHH
Q psy2206 45 KFVLFYSRYVYRRIVDCFNRPVTSVPGAIITI-KDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123 (430)
Q Consensus 45 ~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v-~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al 123 (430)
.++.....++|+ +.+++.+.+|++|.+ .+ +++|||+|||||||+ .+|++++++.+++
T Consensus 8 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g----------------~~~i~~~~~~~lg~~-~~~~v~~~~~~~~ 65 (393)
T TIGR01822 8 ELESIREAGLFK-----SERIITSPQGADIRVADG----------------REVLNFCANNYLGLS-SHPDLIQAAKDAL 65 (393)
T ss_pred HHHHHHHcCCCC-----cccccccCCCceEEecCC----------------ceEEEeeCCCccccC-CCHHHHHHHHHHH
Confidence 344444444544 347889999998876 33 489999999999999 6999999999999
Q ss_pred hhhCCccccCCccccc
Q psy2206 124 KQSGCALCSPSGEIAS 139 (430)
Q Consensus 124 ~~yG~gs~~sr~~~g~ 139 (430)
++||.|.++||...|+
T Consensus 66 ~~~~~~~~~s~~~~G~ 81 (393)
T TIGR01822 66 DEHGFGMSSVRFICGT 81 (393)
T ss_pred HHhCCCCCCcCcccCC
Confidence 9999999999988885
No 322
>PRK13578 ornithine decarboxylase; Provisional
Probab=98.30 E-value=2.3e-06 Score=94.39 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=73.5
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHH-HHhcCcEEEEeccccccc-cCCCCCccceecCCCCCCcc----EEEeCccchhc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRL-KNKYKAYLYVDEAHSIGA-LGPTGRGVTEYFGIDPREVD----ILMGTYTKSFG 370 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~L-a~~y~~~LivDEAh~~G~-lG~~GrG~~e~~g~~~~~~d----Iv~~TlSKa~G 370 (430)
+.+||+.+-| +|.+.++++|+++ ++.++ +|+|||||+... |.+.-++.... .+. ...| +++.|.+|.++
T Consensus 284 k~vvit~pTY--dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~-al~-~GaD~p~i~v~QStHKtL~ 358 (720)
T PRK13578 284 RLAVIQLGTY--DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPL-LLE-LNENDPGIFVTQSVHKQQA 358 (720)
T ss_pred eEEEEECCCC--cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChh-hhh-cCCCCCCeEEEEChhhcch
Confidence 5678888888 8999999999999 68888 999999998654 33321122111 111 1235 99999999997
Q ss_pred c--ccceeecCHHHH---------HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 371 S--MGGYVAGSKSTI---------DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 371 ~--~GG~v~gs~~li---------~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+ +++++......+ +.++. +.....|||++-+.+|..-.+.++++++.|..
T Consensus 359 alTQaS~LHvk~~~i~g~~~~v~~~r~~~-al~m~qSTSPsY~LmASLDva~~~m~~~~G~~ 419 (720)
T PRK13578 359 GFSQTSQIHKKDNHIKGQARYCPHKRLNN-AFMLHASTSPFYPLFAALDVNAKMHEGESGRR 419 (720)
T ss_pred hhhhHhhhhcCCcccccccccCCHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHhhCHH
Confidence 4 557776543222 23332 21222355566555555555566666555543
No 323
>KOG0256|consensus
Probab=98.28 E-value=1.2e-05 Score=82.11 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-Cccce
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTE 349 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e 349 (430)
++||++++++...+ -+.+-||+-.+.++-|++.+ |..++..+.++++.||+||+|+.-||+..+ +.+++
T Consensus 211 ~alE~A~~~A~~~~-------~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~e 283 (471)
T KOG0256|consen 211 EALEAALNQARKLG-------LKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLE 283 (471)
T ss_pred HHHHHHHHHHHHhC-------CceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHH
Confidence 88999998765332 24556667777888999887 777888889999999999999988898653 34444
Q ss_pred ecC---CCCCCccEEEeCccchhcccc---ceeec-CHHHHHHHHhcC
Q psy2206 350 YFG---IDPREVDILMGTYTKSFGSMG---GYVAG-SKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g---~~~~~~dIv~~TlSKa~G~~G---G~v~g-s~~li~~l~~~~ 390 (430)
... ..++ ..=++-|+||-||++| |.|.. +++++...++.+
T Consensus 284 v~~~~~~~~~-rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kms 330 (471)
T KOG0256|consen 284 VRKDPHLDPD-RVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMS 330 (471)
T ss_pred HhhccccCCC-cEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHh
Confidence 321 1333 3345789999999999 88765 677888877754
No 324
>KOG0633|consensus
Probab=98.28 E-value=2.2e-06 Score=83.07 Aligned_cols=100 Identities=23% Similarity=0.241 Sum_probs=75.1
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc-CcEEEEeccccccccCCCCCc-cc-eecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY-KAYLYVDEAHSIGALGPTGRG-VT-EYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y-~~~LivDEAh~~G~lG~~GrG-~~-e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
..+++++.++-+++|.+.....|..+.+.. +.+++|||||- -+-|..-+- ++ ++. .-|++.||||+||..
T Consensus 160 ~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYi-dFsg~~S~~~lV~kYp------NLivlqTlSKsfGLA 232 (375)
T KOG0633|consen 160 KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYI-DFSGVESRMKLVKKYP------NLIVLQTLSKSFGLA 232 (375)
T ss_pred cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeE-eeccccccchHhHhCC------ceeehhhhhhhcCcc
Confidence 456899999999999999999998888765 78999999984 322211111 11 222 257889999999999
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPP 402 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~ 402 (430)
| ||.+.+..+++.+.....+|..|.+.+-+
T Consensus 233 GiRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~ 265 (375)
T KOG0633|consen 233 GIRVGYGAFPLSIAEILNRAKAPYNISVAGSVA 265 (375)
T ss_pred eeEeecccccHHHHHHHHhccCCccccchhHHH
Confidence 9 99999999999998877777655544433
No 325
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.27 E-value=2.7e-06 Score=89.05 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=56.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE--eccccccccCCCCCccceecCCCCCCccEEEe---Cccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV--DEAHSIGALGPTGRGVTEYFGIDPREVDILMG---TYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv--DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~---TlSKa~G 370 (430)
++++|++..+ +++|.+.|+++|.++|+++|+++++ |.+ +.|.+.. .+ ..++|++++ +|||.+.
T Consensus 204 ~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~--------~~--~~~~D~~~~s~~k~~~~~~ 271 (447)
T PRK00451 204 DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKP--------PG--EYGADIVVGEGQPLGIPLS 271 (447)
T ss_pred CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCC--------cc--cCCCCEEEECCCcCCCCCC
Confidence 3567777777 8899999999999999999999998 433 4443311 11 124688888 6677653
Q ss_pred c--cc-ceeecCHHHHHHH
Q psy2206 371 S--MG-GYVAGSKSTIDYI 386 (430)
Q Consensus 371 ~--~G-G~v~gs~~li~~l 386 (430)
+ +| |++..++++++.+
T Consensus 272 ~~Gpg~G~l~~~~~~~~~~ 290 (447)
T PRK00451 272 FGGPYLGFFATRKKLVRQM 290 (447)
T ss_pred CCCCCchHHHhhHHHHhhC
Confidence 3 33 8888888888874
No 326
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=98.26 E-value=2.9e-06 Score=93.47 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccc-eec
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVT-EYF 351 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~-e~~ 351 (430)
+.+++.|++. |+..+| ..+||+.+-| +|.+.++++|+++|+.++ |+|||||+... |.+.-++.. -..
T Consensus 283 e~i~~~i~~~-----p~ak~p--~~~vit~pTY--dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ 351 (714)
T PRK15400 283 ATIAKRVKET-----PNATWP--VHAVITNSTY--DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSG 351 (714)
T ss_pred HHHHHHHHhC-----ccccCc--cEEEEECCCC--ccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhc
Confidence 5677777653 322112 3588888877 899999999999999887 68999997543 332111100 011
Q ss_pred CCCCCCccEEEeCccchhcc--ccceeecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 352 GIDPREVDILMGTYTKSFGS--MGGYVAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+..+++..+++.|.+|.+++ +++++.....+- +.+.. +.....|||++-+.+|....+..++.++.|..
T Consensus 352 ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~-a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~ 423 (714)
T PRK15400 352 GRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNE-AYMMHTTTSPHYGIVASTETAAAMMKGNAGKR 423 (714)
T ss_pred CCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 22112223999999999974 445554322211 22222 21222356666666665566666665545543
No 327
>KOG1360|consensus
Probab=98.22 E-value=6.2e-07 Score=91.09 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=44.5
Q ss_pred CcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 93 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 93 ~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
+.+++--||||||||++ .||++.+|+.++|++||.|++|.|.+.|+.
T Consensus 169 t~k~VtVWCSNDYLgms-~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s 215 (570)
T KOG1360|consen 169 TEKKVTVWCSNDYLGMS-RHPEVLDAMHDTLDRHGAGAGGTRNISGHS 215 (570)
T ss_pred ccCceEEEecCcccccc-CChHHHHHHHHHHHHcCCCcCCccccCCCC
Confidence 45789999999999999 699999999999999999999999999987
No 328
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.19 E-value=1.8e-06 Score=89.39 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHh
Q psy2206 45 KFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVK 124 (430)
Q Consensus 45 ~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~ 124 (430)
.++....+++|+.. +++.+.+|+.+.+.-. ..+++++++||+|||||||+ .+|.+++++.++++
T Consensus 11 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sn~yl~l~-~~p~v~~a~~~~~~ 74 (410)
T PRK13392 11 ALAQLHQEGRYRVF-----ADLEREAGRFPRARDH----------GPDGPRRVTIWCSNDYLGMG-QHPDVIGAMVDALD 74 (410)
T ss_pred HHHHHHHcCCCccc-----cccccccCccceeeec----------ccCCCceEEEEECCCccCCC-CCHHHHHHHHHHHH
Confidence 34444444454443 6777777765433110 00224689999999999999 69999999999999
Q ss_pred hhCCccccCCcccccc
Q psy2206 125 QSGCALCSPSGEIASM 140 (430)
Q Consensus 125 ~yG~gs~~sr~~~g~~ 140 (430)
+||+++++||...|+.
T Consensus 75 ~~~~~~~~s~~~~~~~ 90 (410)
T PRK13392 75 RYGAGAGGTRNISGTS 90 (410)
T ss_pred HcCCCCchhhhcccCh
Confidence 9999999999988875
No 329
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.17 E-value=8e-06 Score=90.05 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEE-EEeccccccc-cCCCCCccceec
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYL-YVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~L-ivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+.++++|++. |+..+| +.+||+.+-| +|.+.++++|+++| |+.+ +|||||+... |.+.-.+.....
T Consensus 283 e~I~~~i~~~-----p~~~~p--~~vvit~pTY--dGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~ 350 (713)
T PRK15399 283 DSIEEKVAAT-----TQAQWP--VHAVITNSTY--DGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMS 350 (713)
T ss_pred HHHHHHHHhC-----CCcCCc--eEEEEECCCC--CceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhh
Confidence 6677777763 322222 4688888877 89999999999999 5666 5999997543 333111111000
Q ss_pred CC-CCCCccEEEeCccchhcc--ccceeecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 352 GI-DPREVDILMGTYTKSFGS--MGGYVAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 352 g~-~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+. .++-+++++.|.+|.+++ +++++.....+- +.++. +.....|||++-+.+|....+.+++.++.|..
T Consensus 351 ~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~-a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~ 423 (713)
T PRK15399 351 GERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNE-AFMMHTSTSPSYPIVASVETAAAMLRGNPGKR 423 (713)
T ss_pred CCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 11 112233449999999974 556765543322 22222 21222356666666665555666665545543
No 330
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.15 E-value=1e-05 Score=83.00 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=64.3
Q ss_pred CCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhcc--ccceeecCHHH
Q psy2206 307 SMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGS--MGGYVAGSKST 382 (430)
Q Consensus 307 sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~--~GG~v~gs~~l 382 (430)
+++|...++++|+++|++||++||.|+||+.|..- .|+.+ ..+ .|+.+-||+ |.+++ -|+++..++++
T Consensus 127 ~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~-~~~~~-g~~------~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~ 198 (375)
T PRK11706 127 HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTY-KGRAL-GTI------GHIGCFSFHETKNYTAGEGGALLINDPAL 198 (375)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECcccccccc-CCeee-ecC------cCEEEEeCCCCccccccCCeEEEECCHHH
Confidence 35799999999999999999999999999987621 12211 111 144444444 99954 23466667888
Q ss_pred HHHHHhcCC-----c--------------ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 383 IDYIRANSH-----V--------------RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 383 i~~l~~~~~-----~--------------~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
++.++.... . ..++.-++.++++..+..|+.+.
T Consensus 199 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~ 250 (375)
T PRK11706 199 IERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAAD 250 (375)
T ss_pred HHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHH
Confidence 865543210 0 11233356677777777777663
No 331
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.14 E-value=6.4e-06 Score=85.26 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|.+-++++.++|+++|.++|++++ ++||.+++.+..++ ..+ ...||++.|.+|.++.
T Consensus 148 ~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~-------pl~---~gaDivv~S~tK~i~G~~d~ 215 (384)
T PRK06434 148 NYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQN-------PLD---LGADVVIHSATKYISGHSDV 215 (384)
T ss_pred CeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCC-------chh---cCCCEEEeecccccCCCCCc
Confidence 5679999999999999999999999999998 57799986654332 111 2469999999999953
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+|+. ++++.+.++.... .++..++|..++..+..|+.+
T Consensus 216 ~gG~vv~~~~~~~~~~~~~~~--~~G~~~~~~~A~l~~~gL~tL 257 (384)
T PRK06434 216 VMGVAGTNNKSIFNNLVERRK--TLGSNPDPIQAYLALRGLKTL 257 (384)
T ss_pred eEEEEecCcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhCCCcH
Confidence 4687765 5677666664321 245667899888877766655
No 332
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=98.13 E-value=2e-06 Score=87.94 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=42.0
Q ss_pred ceeEEeeeccccCCCCCChhhHHHHHHHHhhh-------CCccccCCcccccc
Q psy2206 95 STCLNLASYNYLGFGENTGLCTERSKESVKQS-------GCALCSPSGEIASM 140 (430)
Q Consensus 95 ~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~y-------G~gs~~sr~~~g~~ 140 (430)
.++|||+||||||++ .+|.+.+++.+++++| |+|++|||+..|+.
T Consensus 4 ~~~~~~~s~~YL~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~ 55 (370)
T PRK05937 4 SLSIDFVTNDFLGFS-RSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPS 55 (370)
T ss_pred CceEEeECCCccCCC-CCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCCh
Confidence 479999999999999 6999999999999999 79999999988866
No 333
>KOG1358|consensus
Probab=98.11 E-value=2.9e-06 Score=86.17 Aligned_cols=103 Identities=28% Similarity=0.466 Sum_probs=71.3
Q ss_pred cccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHH
Q psy2206 203 VTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSS 275 (430)
Q Consensus 203 i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~ 275 (430)
+.++.++++++. | ++++||+|+|||||..++ ++++.+...+++||+|+|++|. -.+
T Consensus 81 ~e~~~~~~~~i~--------------G--~~~~N~aS~NfL~l~~~~-~ike~a~~~lrkyGvGsCGPrGFYGt~DvHld 143 (467)
T KOG1358|consen 81 LESVMLPHVTID--------------G--KDVLNFASANFLGLIENE-EIKEEASFTLRKYGVGSCGPRGFYGTIDVHLD 143 (467)
T ss_pred cccccCCceEec--------------C--ceeecccchhhhhhcccH-HHHHHHHHHHHHhCCCCcCCCcccccceeecc
Confidence 466777788775 4 899999999999999986 7899999999999999999998 256
Q ss_pred HHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHH-HHHHHHHhcCcEEEEeccccccc
Q psy2206 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLP-EIVRLKNKYKAYLYVDEAHSIGA 339 (430)
Q Consensus 276 Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~-~I~~La~~y~~~LivDEAh~~G~ 339 (430)
||+.|.+-. |.+ ..+| ||. | .+-++ .|-++|++ |=++++||+-.+.+
T Consensus 144 lE~~iakF~--G~E-------~aiv-----Ys~-g-F~ti~S~ipafsKr-GDIi~~de~~nfaI 191 (467)
T KOG1358|consen 144 LEKRIAKFM--GTE-------DAIV-----YSY-G-FSTIESAIPAFSKR-GDIIFVDEAVNFAI 191 (467)
T ss_pred cHHHHHHhh--CCc-------ceee-----ecc-c-cchhhhcchhhhcc-CcEEEEehhhhHHH
Confidence 777776531 221 2222 221 1 11122 45566766 44567788765554
No 334
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.09 E-value=1.2e-05 Score=85.66 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcc-cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSI-VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i-~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++.+ ++++|++..+. ++|.+ .|+++|+++|+++|++++||+||..+.+|.... ..
T Consensus 198 ~e~L~~~i~~-------------~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~---~~- 259 (481)
T PRK04366 198 LEALKAAVGE-------------DTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARP---GD- 259 (481)
T ss_pred HHHHHhhccc-------------CCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCc---cc-
Confidence 5667666543 24455555554 78877 489999999999999999999998665543211 12
Q ss_pred CCCCCCccEEEeCccchhccc---c----ceeecCHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGSM---G----GYVAGSKSTIDYI 386 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~---G----G~v~gs~~li~~l 386 (430)
..+|+++++.+|.||.+ | |+++.++++.+.+
T Consensus 260 ----~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l 297 (481)
T PRK04366 260 ----MGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL 297 (481)
T ss_pred ----cCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC
Confidence 24699999999998743 2 6888888777766
No 335
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.06 E-value=3.4e-05 Score=79.05 Aligned_cols=97 Identities=25% Similarity=0.260 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+.. ..++++|+.- ++.|...|+++|.++|++||++||+|++|++|.. -.|. ..|
T Consensus 107 ~~~l~~~i~~~~---------~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~~----~~g 169 (380)
T TIGR03588 107 EDALEKKLAAAK---------GKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGGK----PVG 169 (380)
T ss_pred HHHHHHHhhccc---------CCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCCE----eCC
Confidence 677887776310 0123344432 2469999999999999999999999999998752 1121 122
Q ss_pred CCCCCccEEEeCcc--chhcc-ccceeec-CHHHHHHHH
Q psy2206 353 IDPREVDILMGTYT--KSFGS-MGGYVAG-SKSTIDYIR 387 (430)
Q Consensus 353 ~~~~~~dIv~~TlS--Ka~G~-~GG~v~g-s~~li~~l~ 387 (430)
.. .-.|+.+.||+ |.++. .||+++. ++++.+.++
T Consensus 170 ~~-~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~ 207 (380)
T TIGR03588 170 NC-RYADATVFSFHPVKIITTAEGGAVTTNDEELAERMR 207 (380)
T ss_pred Cc-cccceEEEecCCCCcccccCceEEEECCHHHHHHHH
Confidence 21 12378888887 88864 6676665 577776665
No 336
>PRK07505 hypothetical protein; Provisional
Probab=98.06 E-value=5.2e-06 Score=85.77 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhC-
Q psy2206 49 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSG- 127 (430)
Q Consensus 49 ~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG- 127 (430)
...|+.|+|..|||.+|+.+.|...+.+..+ +. .-++-+++++|||+|++||||. +||++++|+.+.+++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----G~-~~~d~~g~~~ld~~s~~~lgl~-~~p~v~~A~~~~l~~~g~ 78 (402)
T PRK07505 6 RNNKKRINRAEKFWDAAYDEGLNGLTVGERE-----GI-LITLADGHTFVNFVSCSYLGLD-THPAIIEGAVDALKRTGS 78 (402)
T ss_pred HHHHHHHHhhHHHHHHHHhcccccceeeccC-----Cc-cEEecCCceEEEeecCCccCCC-CCHHHHHHHHHHHHHhCC
Confidence 3467789999999999998887765433332 11 1233456789999999999996 79999999999999999
Q ss_pred CccccCCccc
Q psy2206 128 CALCSPSGEI 137 (430)
Q Consensus 128 ~gs~~sr~~~ 137 (430)
.++++++...
T Consensus 79 ~~~~~~~~~~ 88 (402)
T PRK07505 79 LHLSSSRTRV 88 (402)
T ss_pred CCCCccchhh
Confidence 6777776533
No 337
>KOG0259|consensus
Probab=98.05 E-value=4.4e-05 Score=77.54 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCC------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2206 252 CTERSKESVKQSGCALCSPSA------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIV 301 (430)
Q Consensus 252 v~~a~~~ai~~yG~g~~~sr~------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi 301 (430)
.++-+.+++.+=|...-.+|. .+.+|++..+ +++.+|
T Consensus 138 AIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DE-------------NT~Aiv 204 (447)
T KOG0259|consen 138 AIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADE-------------NTVAIV 204 (447)
T ss_pred HHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhcc-------------CeeEEE
Confidence 367777777776665555554 2556666544 678888
Q ss_pred EcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---ce
Q psy2206 302 VEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG---GY 375 (430)
Q Consensus 302 ~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~ 375 (430)
+-.+.++.|.+.. |++|+++|+++++++|.||+|+.-+||..-.-....+. ..-..|.+|++||.+=.+| ||
T Consensus 205 viNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fs--siVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 205 VINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFS--SIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred EeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcc--ccCceEeecccccccccCCceeee
Confidence 8889999999886 99999999999999999999998888853221111222 1123688999999998888 88
Q ss_pred eec
Q psy2206 376 VAG 378 (430)
Q Consensus 376 v~g 378 (430)
++.
T Consensus 283 i~~ 285 (447)
T KOG0259|consen 283 IAL 285 (447)
T ss_pred EEE
Confidence 763
No 338
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.03 E-value=2.3e-05 Score=80.77 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceecCCCCCCccEEEeCcc----chhc--cccceeec-
Q psy2206 307 SMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYFGIDPREVDILMGTYT----KSFG--SMGGYVAG- 378 (430)
Q Consensus 307 sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~g~~~~~~dIv~~TlS----Ka~G--~~GG~v~g- 378 (430)
.++|...++++|+++|++||++||.|++|+.|. +. |+. .|. -.|+. +|| |.+. ..||+++.
T Consensus 127 ~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~--~~~----~g~---~~~~~--~fSf~~~K~l~~g~~gG~v~~~ 195 (376)
T TIGR02379 127 HYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYK--GRA----LGS---IGHLG--TFSFHETKNYTSGGEGGALLIN 195 (376)
T ss_pred CCCCCccCHHHHHHHHHHCCCEEEEECccccCCccC--Ccc----cCC---CCCEE--EEeCCCCCcCcccCCceEEEEC
Confidence 457999999999999999999999999999775 32 221 111 11343 555 7664 36788655
Q ss_pred CHHHHHHHHhcCC---c----------------ccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 379 SKSTIDYIRANSH---V----------------RSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 379 s~~li~~l~~~~~---~----------------~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++++++.++.... . .-+..-++.++++..++.|+.+.+
T Consensus 196 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~ 252 (376)
T TIGR02379 196 DQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR 252 (376)
T ss_pred CHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH
Confidence 4888877764211 0 123344567777777777777744
No 339
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=98.02 E-value=1.2e-05 Score=85.76 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc--cccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG--SMGG 374 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G--~~GG 374 (430)
+.+||+.+-| +|.+.++++|+++++++++|+.+||+|.... +..+. ..+ ..+. ...|+++.|.+|.+| +++.
T Consensus 168 k~~vitnpTY--dGv~~n~~~i~~~~~~~~a~v~~deah~~~~-~~~~~-l~~-~~~~-~~~~~~tqS~HK~l~alSQaS 241 (557)
T COG1982 168 KLAVITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAHPAHF-DFSPM-LPE-SALN-GGADFVTQSTHKLLAALSQAS 241 (557)
T ss_pred eeEEEecCcc--ceEeecHHHHHHHHhhcCceEEhhhcCcccc-ccccc-Ccc-hhhh-cCceEEEechhhhhhhhhhhH
Confidence 7789999988 8999999999999999999999999997653 22111 111 1221 356999999999997 3566
Q ss_pred eeecCH-------HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 375 YVAGSK-------STIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 375 ~v~gs~-------~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
++.... .+-+++.. ++++.|...+.|++.+.+.+.+..|..
T Consensus 242 ~iHv~~~~~~~~~r~nea~~~------h~STSPsY~l~ASlD~Ar~~~~~~G~~ 289 (557)
T COG1982 242 MIHVKDGRAVNHERFNEALMM------HQSTSPSYPLMASLDVARMQEGNAGRE 289 (557)
T ss_pred HHhhCCCccCCHHHHHHHHHH------HccCCchHHHHHHHHHHHHhhhhhhHH
Confidence 665542 22233322 233334444455666677776666643
No 340
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=97.99 E-value=3.5e-05 Score=79.28 Aligned_cols=72 Identities=26% Similarity=0.455 Sum_probs=49.3
Q ss_pred CCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhc-cccceeec-CHHHH
Q psy2206 308 MDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFG-SMGGYVAG-SKSTI 383 (430)
Q Consensus 308 m~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G-~~GG~v~g-s~~li 383 (430)
+.|...|+++|.++|++||++||+|+||++|..- .|+ ..+- ...++. ||+ |.+. ..||+++. +++++
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~-~~~----~~g~--~g~~~~--Sf~~~K~l~~g~GG~v~~~~~~~~ 200 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYY-KGR----HIGA--RGTAIF--SFHAIKNITCAEGGLVVTDDDELA 200 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeE-CCe----ecCC--CCCEEE--eCCCCCcCcccCceEEEECCHHHH
Confidence 4799999999999999999999999999987531 121 1121 122444 655 5553 35787776 47887
Q ss_pred HHHHh
Q psy2206 384 DYIRA 388 (430)
Q Consensus 384 ~~l~~ 388 (430)
+.++.
T Consensus 201 ~~~~~ 205 (379)
T PRK11658 201 DRLRS 205 (379)
T ss_pred HHHHH
Confidence 76653
No 341
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=97.99 E-value=3.5e-05 Score=79.98 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC-ccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG-IFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~-v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.+.+++++++. +..+||+.+ .| --..|+++++++|++.|++|++|=+|-.|.+.. |....
T Consensus 158 ~d~l~~~a~~~------------kPklIi~G~S~y---~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~---g~~~~- 218 (399)
T PF00464_consen 158 YDELEKLAKEH------------KPKLIICGASSY---PRPIDFKRFREIADEVGAYLMADISHIAGLIAG---GLFPN- 218 (399)
T ss_dssp HHHHHHHHHHH--------------SEEEEE-SST---SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHT---TSS---
T ss_pred HHHHHHHHhhc------------CCCEEEECchhc---cCccCHHHHHHHHHhcCcEEEecccccccceeh---heecC-
Confidence 68888888775 233566654 33 334689999999999999999999999887631 33222
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecC--------------HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGS--------------KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs--------------~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++ ...||+++|.+|+| |..||+|.++ +++.+.+.....+.+.+ .+..-..++...++...++
T Consensus 219 P~--~~ADvvt~sThKtl~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg-~~h~~~iaalAval~ea~~ 295 (399)
T PF00464_consen 219 PF--PYADVVTGSTHKTLRGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQG-GPHMHRIAALAVALKEALS 295 (399)
T ss_dssp GC--CTSSEEEEESSGGG-SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-S-S--HHHHHHHHHHHHHHTS
T ss_pred cc--ccceEEEeeccccccccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCccc-CcchhHHHHHHHHHhcccC
Confidence 23 24799999999999 6789999999 88888888754443323 2333333434445554443
Q ss_pred c
Q psy2206 417 L 417 (430)
Q Consensus 417 ~ 417 (430)
.
T Consensus 296 ~ 296 (399)
T PF00464_consen 296 P 296 (399)
T ss_dssp H
T ss_pred H
Confidence 3
No 342
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=97.91 E-value=3.8e-05 Score=78.91 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=99.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHH
Q psy2206 247 ENTGLCTERSKESVKQSGCALCSPS-------APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIV 319 (430)
Q Consensus 247 ~~~~~v~~a~~~ai~~yG~g~~~sr-------~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~ 319 (430)
.|+ .|.+.+... ++.|...+--. .+++|+++|++ ++++|-+=.+.|..|.+-|+++|.
T Consensus 100 EH~-aVl~~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~-------------~T~LVSim~aNnE~G~IQpI~ei~ 164 (386)
T COG1104 100 EHP-AVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRP-------------DTILVSIMHANNETGTIQPIAEIG 164 (386)
T ss_pred ccH-HHHHHHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCC-------------CceEEEEEecccCeeecccHHHHH
Confidence 454 677877776 77675443211 17899998875 488999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHH-HHHHhc---CCccc
Q psy2206 320 RLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTI-DYIRAN---SHVRS 394 (430)
Q Consensus 320 ~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li-~~l~~~---~~~~~ 394 (430)
++|+++++++-+|=++++|-+- ..+....+|++.-|-+|-.|.-| |++..++.+. ..+... -++ .
T Consensus 165 ~i~k~~~i~fHvDAvQa~Gkip---------i~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g-~ 234 (386)
T COG1104 165 EICKERGILFHVDAVQAVGKIP---------IDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERG-L 234 (386)
T ss_pred HHHHHcCCeEEEehhhhcCcee---------ccccccCcceEEeehhhccCCCceEEEEECCCCccCceeccCcCCCC-C
Confidence 9999999999999999865321 12221237999889999988766 6665444332 222221 111 2
Q ss_pred ccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 395 YATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 395 ~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-+.+.+.+.+++.-+|+++..++
T Consensus 235 RsGTenv~~Ivg~~~A~~~a~~~ 257 (386)
T COG1104 235 RSGTENVPGIVGFGKAAEIAVEE 257 (386)
T ss_pred CCCCccHHHHHHHHHHHHHHHHH
Confidence 24556666666666677766544
No 343
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=97.91 E-value=2.4e-05 Score=80.52 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=81.9
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc-cc-cee
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS-MG-GYV 376 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~-~G-G~v 376 (430)
+|.+-.+.+.+|.+.|+++|++ ++||++++||=++++|.. ...+ +++|+++.|..|.++. +| |++
T Consensus 139 ~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~---------pidv--~~iD~~~~s~~K~l~~P~G~g~l 205 (378)
T PRK03080 139 DVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL---------PLDW--SKLDVYTFSWQKVLGGEGGHGMA 205 (378)
T ss_pred CEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccC---------CCCH--HHCcEEEEehhhhCCCCCceEEE
Confidence 4667778888999999999999 789999999999987753 1233 3579999999999965 67 899
Q ss_pred ecCHHHHHHHHhcCCc-------------------ccccC--CCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 377 AGSKSTIDYIRANSHV-------------------RSYAT--SMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 377 ~gs~~li~~l~~~~~~-------------------~~~s~--s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
..+++.++.+.....+ +...+ .++.....+..++|+.++++.+.+...+|.+
T Consensus 206 ~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~ 278 (378)
T PRK03080 206 ILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTA 278 (378)
T ss_pred EECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998876642100 00111 1223334445778999987645555555543
No 344
>PRK02769 histidine decarboxylase; Provisional
Probab=97.90 E-value=0.00016 Score=74.91 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC---cEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK---AYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~---~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++|++. ..++++|++-...+++|.+.|+++|.++|++|| +++.||=||+.+++-- -+.. .
T Consensus 147 ~~~L~~~i~~~----------~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~-~~~~-~ 214 (380)
T PRK02769 147 YDDLISKIKEN----------KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPF-VNNP-P 214 (380)
T ss_pred HHHHHHHHHhC----------CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecc-cCcc-c
Confidence 68888888762 114678888889999999999999999999998 6999999998765421 0000 0
Q ss_pred ecCCCCCCccEEEeCccchhcc-cc-ceeecCHHHHHHHHhcCCcc------cccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 350 YFGIDPREVDILMGTYTKSFGS-MG-GYVAGSKSTIDYIRANSHVR------SYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~~li~~l~~~~~~~------~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
.+... ..+|.+..|.+|-++. .| |++..+++.++.+... ..| ....+-+...+++.-++|+.+ +.+|..
T Consensus 215 ~~d~~-~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~-~~yl~~~d~t~~GSR~g~~~l~lw~aL~~l-g~~G~~ 291 (380)
T PRK02769 215 PFSFA-DGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD-VDYIGSRDQTISGSRNGHTALLLWAAIRSL-GSKGLR 291 (380)
T ss_pred cCCcc-CCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC-ccccCCCCCCccCCCCcHHHHHHHHHHHHH-CHHHHH
Confidence 12332 2579999999998873 33 7777777666554321 111 123333434455566677765 333444
Q ss_pred HHH
Q psy2206 422 EGN 424 (430)
Q Consensus 422 ~~~ 424 (430)
+..
T Consensus 292 ~~~ 294 (380)
T PRK02769 292 QRV 294 (380)
T ss_pred HHH
Confidence 433
No 345
>KOG1549|consensus
Probab=97.88 E-value=2e-05 Score=81.58 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=63.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|.++.|.||.|.+-|+++|+.+|+++++.+.+|=||++|-.- .++..-.+|.+..+.+|.||.+| |
T Consensus 181 ~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~---------vDV~eln~D~~s~s~HK~ygp~~iG 251 (428)
T KOG1549|consen 181 KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIP---------VDVQELNADFLSISAHKIYGPPGIG 251 (428)
T ss_pred CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCcc---------ccHHHcCchheeeecccccCCCcce
Confidence 5889999999999999999999999999999999999999977431 12222346899999999999987 7
Q ss_pred eeecCH
Q psy2206 375 YVAGSK 380 (430)
Q Consensus 375 ~v~gs~ 380 (430)
++..++
T Consensus 252 aLYvr~ 257 (428)
T KOG1549|consen 252 ALYVRR 257 (428)
T ss_pred EEEEcc
Confidence 776665
No 346
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=97.85 E-value=0.00012 Score=77.05 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=70.4
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhc-ccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFG-SMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G-~~G 373 (430)
+++|++..+ .|...++++|.++|++||++||+|++|++|..- .|+. +..+| |+.+-||. |.+. ..|
T Consensus 160 tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~-~g~~-~G~~g------d~~~fSf~~~k~~~~geG 228 (438)
T PRK15407 160 TKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTY-DGRM-TGTFG------DIATLSFYPAHHITMGEG 228 (438)
T ss_pred CeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhc-CCee-eeccC------ceEEEeCCCCCCccccCc
Confidence 456666655 377789999999999999999999999987632 1221 11222 56666665 4453 357
Q ss_pred ceeecC-HHHHHHHH---hcCCc----------------------------------ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 374 GYVAGS-KSTIDYIR---ANSHV----------------------------------RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 374 G~v~gs-~~li~~l~---~~~~~----------------------------------~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
|+++.+ +++.+.++ ..... ..+...++.++||.++..|+.+.
T Consensus 229 G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~ 308 (438)
T PRK15407 229 GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLP 308 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHH
Confidence 887765 45544333 22110 12345678899998888888774
Q ss_pred c
Q psy2206 416 G 416 (430)
Q Consensus 416 ~ 416 (430)
+
T Consensus 309 ~ 309 (438)
T PRK15407 309 G 309 (438)
T ss_pred H
Confidence 4
No 347
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=97.80 E-value=9.6e-05 Score=75.52 Aligned_cols=121 Identities=25% Similarity=0.280 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+ +++.||+-.+| |..+++++|.++|++||++||-|=||++|..- .|+ ..|
T Consensus 103 ~~~~~~~i~~-------------~t~ai~~~h~~---G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~-~g~----~~G 161 (363)
T PF01041_consen 103 PEALEKAITP-------------KTKAILVVHLF---GNPADMDAIRAIARKHGIPLIEDAAQAFGARY-KGR----PVG 161 (363)
T ss_dssp HHHHHHHHHT-------------TEEEEEEE-GG---GB---HHHHHHHHHHTT-EEEEE-TTTTT-EE-TTE----ETT
T ss_pred HHHHHHHhcc-------------CccEEEEecCC---CCcccHHHHHHHHHHcCCcEEEccccccCcee-CCE----ecc
Confidence 6889998875 34555555555 88889999999999999999999999987621 122 122
Q ss_pred CCCCCccEEEeCc--cchhc-cccceeecC-HHHHHHHHhc---CCc------------ccccCCCcHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTY--TKSFG-SMGGYVAGS-KSTIDYIRAN---SHV------------RSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G-~~GG~v~gs-~~li~~l~~~---~~~------------~~~s~s~~P~~~aaalaaL~~ 413 (430)
- .-|+.+-|| +|.+. ..||+|+.+ +++.+.++.. ... ..+..-+++++++.++..|+.
T Consensus 162 ~---~gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~ 238 (363)
T PF01041_consen 162 S---FGDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKR 238 (363)
T ss_dssp S---SSSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHT
T ss_pred C---CCCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHH
Confidence 1 127777888 58885 357887774 6666666542 211 123456899999988888877
Q ss_pred HHcc
Q psy2206 414 IMGL 417 (430)
Q Consensus 414 l~~~ 417 (430)
+.+.
T Consensus 239 L~~~ 242 (363)
T PF01041_consen 239 LDEI 242 (363)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7443
No 348
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00011 Score=75.04 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++++++..+. +.++||. =+.| -...|+++++++|++.|++|++|=||=.|+.-. |. +.
T Consensus 155 yD~~~k~a~e~------------kPK~ii~G~SaY---~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~---G~--~p 214 (413)
T COG0112 155 YDEVEKLAKEV------------KPKLIIAGGSAY---SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAG---GV--HP 214 (413)
T ss_pred HHHHHHHHHHh------------CCCEEEECcccc---ccccCHHHHHHHHHHhCceEEehHHHHHHHHhc---cc--CC
Confidence 58888887774 2334444 3445 456789999999999999999999998887531 22 22
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH-HHHHHHHhcCCcccccC
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK-STIDYIRANSHVRSYAT 397 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~-~li~~l~~~~~~~~~s~ 397 (430)
..- ...||+++|.+|+| |..||.|.++. ++.+.+...-.+-+.+.
T Consensus 215 ~P~-~~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin~aVFPg~qgg 261 (413)
T COG0112 215 NPL-PHADVVTTTTHKTLRGPRGGIILTNDEELAKKINSAVFPGLQGG 261 (413)
T ss_pred CCC-CccceEeCCcccCCCCCCceEEEeccHHHHHHhhhhcCCccCCC
Confidence 222 24799999999999 77899999985 88888877444433333
No 349
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=97.78 E-value=6.9e-05 Score=76.77 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=81.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccce
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGY 375 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~ 375 (430)
++++|.+-..-+.+|.+.|+++| ++++|++++||=++++|.. .++.+++|+++.|-.|.+|.+||.
T Consensus 128 ~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~-----------~idv~~~D~~~~s~~K~lg~~~Gl 193 (361)
T TIGR01366 128 GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGL-----------PVDIAETDVYYFAPQKNFASDGGL 193 (361)
T ss_pred CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCC-----------CCCHHHCCEEEEEchhhcCCCCce
Confidence 45678888888889999999887 5889999999999987632 223235799999999999988754
Q ss_pred --eecCHHHHHHHHhcCCc------cc------------c-cCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 376 --VAGSKSTIDYIRANSHV------RS------------Y-ATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 376 --v~gs~~li~~l~~~~~~------~~------------~-s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
++.++++++.+...... +. . ...++.....+..++++.++++.+.+...+|.+
T Consensus 194 ~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~ 267 (361)
T TIGR01366 194 WLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTA 267 (361)
T ss_pred EEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34588877666532110 10 0 122344445567789999988755555545443
No 350
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=97.77 E-value=0.00022 Score=73.38 Aligned_cols=134 Identities=14% Similarity=0.170 Sum_probs=92.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCC
Q psy2206 266 ALCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR 345 (430)
Q Consensus 266 g~~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr 345 (430)
|...-....|++.++.+.. .-.+=|..+=|.+++++ ++++++++|++|++.+|+|.+-+.-+- .-.
T Consensus 139 G~tn~t~~~d~~~AIne~t-----------a~llkV~s~~~~f~~~l-~~~~l~~ia~~~~lpvivD~aSg~~v~--~e~ 204 (395)
T COG1921 139 GTTNRTHLKDYELAINENT-----------ALLLKVHSSNYGFTGML-SEEELVEIAHEKGLPVIVDLASGALVD--KEP 204 (395)
T ss_pred cccCcCCHHHHHHHhccCC-----------eeEEEEeeccccccccc-cHHHHHHHHHHcCCCEEEecCCccccc--ccc
Confidence 3333444789998887621 22344455544455554 788999999999999999998543321 111
Q ss_pred ccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 346 GVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 346 G~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+.-+.+. ..+|+++.|-.|.|| ..+|+|+|.+++|+.+++.... +.--..+..+++..++|+.+...+
T Consensus 205 ~l~~~la---~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~--Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 205 DLREALA---LGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLK--RALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred chhHHHh---cCCCEEEEecchhcCCCccceEechHHHHHHHHhhhhh--hhhhcCcHhHHHHHHHHHHHcCch
Confidence 2222222 356999999999996 5679999999999998875433 344456778888999999997764
No 351
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00019 Score=71.09 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=75.7
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.+.+|++.-+-+++|.+.. +..|-+||++||+.|++|.||+..+=+=.-.-....|+ +..|.+.||||. |.+
T Consensus 179 ~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~----~NiilC~SLSK~-GLP 253 (417)
T COG3977 179 STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWN----ENIILCMSLSKL-GLP 253 (417)
T ss_pred ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCC----CCEEEEeehhhc-CCC
Confidence 5667888888999999875 77888889999999999999986642110011112232 346889999997 778
Q ss_pred c---ceeecCHHHHHHHHhcCC-cccccCCCcHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSH-VRSYATSMPPPVAMQILT 409 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~-~~~~s~s~~P~~~aaala 409 (430)
| |.+++++++++.+.+... -....+.+.|+.++-+++
T Consensus 254 G~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie 294 (417)
T COG3977 254 GSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIE 294 (417)
T ss_pred CcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhh
Confidence 8 999999999999987431 112234455555554443
No 352
>KOG2862|consensus
Probab=97.68 E-value=0.00066 Score=67.66 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhCCCC-------CCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC-HHHHHHHHH
Q psy2206 252 CTERSKESVKQSGCAL-------CSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR-LPEIVRLKN 323 (430)
Q Consensus 252 v~~a~~~ai~~yG~g~-------~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~-L~~I~~La~ 323 (430)
.-+.+.+..++||... |.+-..+++++.|.++ +..+|++--.-|-+|.+.| ++.+-++|+
T Consensus 103 wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh------------~p~~vfv~hgdsSTgV~q~~~~~~g~lc~ 170 (385)
T KOG2862|consen 103 WGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQH------------KPKAVFVTHGDSSTGVLQDLLAISGELCH 170 (385)
T ss_pred HHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhc------------CCceEEEEecCccccccchHHHHHHHHhh
Confidence 4567888999999733 2222268899888874 2335555556667899999 888889999
Q ss_pred hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhcCCc---------
Q psy2206 324 KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRANSHV--------- 392 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~~~~--------- 392 (430)
+|+++|+||-+-++|. +.|-++...+|+....--|++|.+- +.|+.|+...+.++.....
T Consensus 171 k~~~lllVD~VaSlgg---------t~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~ 241 (385)
T KOG2862|consen 171 KHEALLLVDTVASLGG---------TEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDIL 241 (385)
T ss_pred cCCeEEEEechhhcCC---------ccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHH
Confidence 9999999999987652 1233333456888888889998765 5677888877777753220
Q ss_pred ------------ccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 393 ------------RSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 393 ------------~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-.|-.++|........+||..|.++
T Consensus 242 ~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~ee 278 (385)
T KOG2862|consen 242 RLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEE 278 (385)
T ss_pred hhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHH
Confidence 1122234455566677789888665
No 353
>PRK07179 hypothetical protein; Provisional
Probab=97.64 E-value=6.6e-05 Score=77.67 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 92 GTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 92 g~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
+.++.++||+|||||||+ +||.+++++.+++++||.++++|+...+
T Consensus 51 ~~g~~~~~~~~~~YL~l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~ 96 (407)
T PRK07179 51 TPGPDAIILQSNDYLNLS-GHPDIIKAQIAALQEEGDSLVMSAVFLH 96 (407)
T ss_pred CCCCcEEEeecCCccCCC-CCHHHHHHHHHHHHHhCCCCCccccccC
Confidence 455689999999999999 6999999999999999988876665443
No 354
>KOG0634|consensus
Probab=97.61 E-value=0.00035 Score=72.11 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=89.8
Q ss_pred HHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhhc--CCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHH
Q psy2206 255 RSKESVKQSGCALCSPS------APSSLEAGLQKALLE--GQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKN 323 (430)
Q Consensus 255 a~~~ai~~yG~g~~~sr------~~~~Le~~L~~~~~~--~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~ 323 (430)
+|.+.++..|+..-... .|+.|++++...... +.| ...++..+.+-.+++|.... -++|.+||+
T Consensus 160 ~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~-----~p~vlYTIPTgqNPTG~tls~errk~iy~LAr 234 (472)
T KOG0634|consen 160 SALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKP-----KPHVLYTIPTGQNPTGNTLSLERRKKIYQLAR 234 (472)
T ss_pred HHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCC-----CCeEEEeCcCCCCCCCCccCHHHHHHHHHHHH
Confidence 34555555564322111 189999999875321 222 24677888888999999887 578999999
Q ss_pred hcCcEEEEeccccccccCCC-C---------C--c-----cceecCCCCCCccEEEeCccchhcccc---ceeecCHHHH
Q psy2206 324 KYKAYLYVDEAHSIGALGPT-G---------R--G-----VTEYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTI 383 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~-G---------r--G-----~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li 383 (430)
+||+++|-||.|.+.-++.- + . - +.....++-+...|-+.||||-++ +| ||+.+++.++
T Consensus 235 KyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l 313 (472)
T KOG0634|consen 235 KYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFL 313 (472)
T ss_pred HcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecCHHHH
Confidence 99999999999987666520 0 0 0 112234444567899999999985 44 9999999888
Q ss_pred HHHHhcC
Q psy2206 384 DYIRANS 390 (430)
Q Consensus 384 ~~l~~~~ 390 (430)
+.+...+
T Consensus 314 ~ril~~a 320 (472)
T KOG0634|consen 314 KRILDLA 320 (472)
T ss_pred HHHhhhc
Confidence 8776644
No 355
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=97.53 E-value=0.00036 Score=73.43 Aligned_cols=104 Identities=12% Similarity=0.151 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCcc---cCHHHHHHHHHhcCcEEEEeccccccc--c------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGA--L------ 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~--l------ 340 (430)
+++||++|++.. +.+..+|.++-..+. .|.. +++++|.++|++||+.|+.|=||.++- +
T Consensus 156 ~~~Le~aI~~~~---------~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~ 226 (450)
T TIGR02618 156 LKKLQKLIDEVG---------ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQ 226 (450)
T ss_pred HHHHHHHhcccc---------CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccc
Confidence 677888876421 112234444444443 4676 458999999999999999999998742 2
Q ss_pred CCCCCccc----eecCCCCCCccEEEeCccchhcc-ccceee-cCHHHHHHHHhc
Q psy2206 341 GPTGRGVT----EYFGIDPREVDILMGTYTKSFGS-MGGYVA-GSKSTIDYIRAN 389 (430)
Q Consensus 341 G~~GrG~~----e~~g~~~~~~dIv~~TlSKa~G~-~GG~v~-gs~~li~~l~~~ 389 (430)
|..+..+. +.+ ...|..+.|..|.++. +||+++ .++++++.++..
T Consensus 227 g~~~~~i~ei~~e~~----~~aD~~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~ 277 (450)
T TIGR02618 227 GYEDKSIAEILKEMM----SYADGCTMSGKKDCLVNIGGFLCMNDDEMFQSAKEL 277 (450)
T ss_pred cccCCCHHHHHHHHh----ccCcEEEEeeccCCCCCCceEEEeCCHHHHHHHHHH
Confidence 12222221 112 1358889999998875 499998 789999888765
No 356
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=97.41 E-value=0.0011 Score=70.00 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCccc---CHHHHHHHHHhcCcEEEEecccccc---cc-----
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSIV---RLPEIVRLKNKYKAYLYVDEAHSIG---AL----- 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i~---~L~~I~~La~~y~~~LivDEAh~~G---~l----- 340 (430)
+++||++|++.. +.++.+|.++-..+. .|... ++++|.++|++||+.|+.|=||.+| ++
T Consensus 163 ~d~Le~~I~~~~---------~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~ 233 (460)
T PRK13237 163 LDKLQALIDEVG---------AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREE 233 (460)
T ss_pred HHHHHHHhcccc---------CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhccccc
Confidence 677888876421 112223333322233 35544 6899999999999999999999877 22
Q ss_pred CCCCCccc----eecCCCCCCccEEEeCccchhccc-cceeec-CHHHHHHHHhc
Q psy2206 341 GPTGRGVT----EYFGIDPREVDILMGTYTKSFGSM-GGYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 341 G~~GrG~~----e~~g~~~~~~dIv~~TlSKa~G~~-GG~v~g-s~~li~~l~~~ 389 (430)
|-.|+.+. |.+ .-.|+++.|++|.++.. ||+|+. ++++++.++..
T Consensus 234 ~y~~~~i~ei~~e~~----s~aD~~t~S~~K~~~~~~GG~i~t~D~eL~~~~r~~ 284 (460)
T PRK13237 234 GYQDKSIKEIVHEMF----SYADGCTMSGKKDCLVNIGGFLAMNDEELFDEAKEL 284 (460)
T ss_pred ccCCCcHhHHhhhcc----CcCcEEEEeCCCCCCCCCceEEEECCHHHHHHHHHh
Confidence 11122211 111 13489999999988754 888765 68888888875
No 357
>PLN03032 serine decarboxylase; Provisional
Probab=97.41 E-value=0.0027 Score=65.65 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC-----cEEEEeccccccccCCCCCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK-----AYLYVDEAHSIGALGPTGRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~-----~~LivDEAh~~G~lG~~GrG~ 347 (430)
+++|+++|++.. .++++|++-...+++|.+.|+++|.++|++|| +++-||=|++.+.+--...
T Consensus 148 ~~~L~~~i~~~~----------~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~-- 215 (374)
T PLN03032 148 YDDLERALAKNR----------DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR-- 215 (374)
T ss_pred HHHHHHHHHHcC----------CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC--
Confidence 789999987621 13556666677788999999999999999996 5899999987654310000
Q ss_pred ceecCCCCCCccEEEeCccchhc-ccc-ceeecCHHHHHHHH
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFG-SMG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G-~~G-G~v~gs~~li~~l~ 387 (430)
...+... ..+|-+..+.+|-+| ..| |++..++..++.+.
T Consensus 216 ~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~ 256 (374)
T PLN03032 216 APEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALS 256 (374)
T ss_pred CcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhc
Confidence 0111222 247889999999888 445 77777776665543
No 358
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=97.38 E-value=0.00049 Score=70.58 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=75.5
Q ss_pred EEEEcCccCCCCccc-CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-cee
Q psy2206 299 LIVVEGIFSMDGSIV-RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYV 376 (430)
Q Consensus 299 lIi~E~v~sm~G~i~-~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v 376 (430)
+|.+-..-+.+|.+. |+++| ||++++||=++++|.. .++.++.|+++.|-.|++|.+| |++
T Consensus 144 ~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~-----------~idv~~~d~~~~ssqK~lgP~Glg~l 206 (360)
T PRK05355 144 YVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSR-----------PIDVSKFGLIYAGAQKNIGPAGLTIV 206 (360)
T ss_pred EEEEccCCCcceEecCccccc------CCCcEEEEcCccccCc-----------cCCHHHccEEEEeccccccCCceEEE
Confidence 455544555578887 67766 8999999999987632 2333455799999999999888 899
Q ss_pred ecCHHHHHHHHhc-C----------CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 377 AGSKSTIDYIRAN-S----------HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 377 ~gs~~li~~l~~~-~----------~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
..++++++.+... . ....+ .+++-..+.+..++|+.+.++.+.+...++.+
T Consensus 207 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~ 268 (360)
T PRK05355 207 IVREDLLGRALPSIPSMLDYKTHADNDSMY-NTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQ 268 (360)
T ss_pred EECHHHHhhcccCCChHHHHHHHHhcCCcc-CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999888765441 1 11112 23555566677889999976634555554433
No 359
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=97.30 E-value=0.00053 Score=78.60 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+. ..++++|++-.+.+..|.+.|+++|+++|+++|+++++|=|+..+..+..- ...
T Consensus 653 le~L~~~i~~~----------~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~---p~~-- 717 (993)
T PLN02414 653 IEELRKAAEAH----------KDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS---PGF-- 717 (993)
T ss_pred HHHHHHHHhcc----------CCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCC---ccc--
Confidence 57888887642 125678888888888899999999999999999999999999876543211 112
Q ss_pred CCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
..+||+++|.+|+|+. +| |+++.++.++.++-
T Consensus 718 ---~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lP 756 (993)
T PLN02414 718 ---IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP 756 (993)
T ss_pred ---cCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCC
Confidence 2469999999998852 22 78888887776554
No 360
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=97.30 E-value=0.003 Score=62.06 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=68.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
...+.++-.+-+..|.++|-+.+.++|++|++.|++.=||+.|-+.-+++ + -..|++++|-+|++++.|
T Consensus 156 ~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~k--------e-~g~DFiVgSGHKsmAAs~Pi 226 (382)
T COG1103 156 PPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGK--------E-IGADFIVGSGHKSMAASAPI 226 (382)
T ss_pred CceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccccc--------c-cCCCEEEecCccchhccCCe
Confidence 35677777788888999999999999999999999999998776532222 2 245899999999998655
Q ss_pred ceeecCHHHHHHHHhcC
Q psy2206 374 GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~ 390 (430)
|.++.+.+..+.+-..+
T Consensus 227 Gvl~~~eE~ae~V~r~S 243 (382)
T COG1103 227 GVLAMSEEWAEIVLRRS 243 (382)
T ss_pred eEEeehhHHHHHHHhhc
Confidence 99999999887665433
No 361
>PLN02724 Molybdenum cofactor sulfurase
Probab=97.28 E-value=0.0011 Score=75.08 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=78.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--------CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--------KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTK 367 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--------~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSK 367 (430)
++++|++..+.+.+|.+.|+++|.++++.. +++++||=||++|.+- ..+...++|+++.|+.|
T Consensus 192 ~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~p---------iDv~~~~~Dfl~~S~HK 262 (805)
T PLN02724 192 AYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSP---------PDLSRYPADFVVVSFYK 262 (805)
T ss_pred CcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCC---------CChhhcCCCEEEEecce
Confidence 457999999999999999999775555532 3679999999876431 12222356999999999
Q ss_pred hhc-ccc-ceeecCHHHHHHHHhcCCc------------c----------cccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 368 SFG-SMG-GYVAGSKSTIDYIRANSHV------------R----------SYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 368 a~G-~~G-G~v~gs~~li~~l~~~~~~------------~----------~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-+| ..| |++..++++++.+.....+ + .-..+++.+.++++.++++.+.+-
T Consensus 263 ~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~i 336 (805)
T PLN02724 263 IFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRL 336 (805)
T ss_pred eccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHh
Confidence 998 445 8888888887766532110 0 012345666677777889888653
No 362
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=97.25 E-value=0.00069 Score=69.09 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=76.4
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ce
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GY 375 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~ 375 (430)
+.+|.+-..-+.+|.+.+ ++++.||++++||=++++|.+ .++.++.|+.+.|-.|.+|.+| |+
T Consensus 139 ~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~-----------~idv~~~~~~~ss~~K~lGP~G~g~ 202 (355)
T cd00611 139 AAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSR-----------PIDVSKFGVIYAGAQKNLGPAGVTV 202 (355)
T ss_pred CCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCC-----------CCCHHHhCEEEeecccccCCCceEE
Confidence 456777777777888632 455669999999999987643 2333345677777899999888 89
Q ss_pred eecCHHHHHHHHhcCCccc----------ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 376 VAGSKSTIDYIRANSHVRS----------YATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 376 v~gs~~li~~l~~~~~~~~----------~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
+..++++++.+......+. ...+++...+.+..++|+.+.++.+.+...++.+
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~ 265 (355)
T cd00611 203 VIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNR 265 (355)
T ss_pred EEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999988876543211110 0123445556677789999976645555555443
No 363
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.0024 Score=65.94 Aligned_cols=120 Identities=23% Similarity=0.264 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++.||+.|.+ +++.||.=.+| |..+++++|.+||++||++||-|=||++|..-+ |+.+ ..+|
T Consensus 112 ~~~ie~aIt~-------------~tKAIipVhl~---G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~-gk~v-Gt~G 173 (374)
T COG0399 112 PDLIEAAITP-------------RTKAIIPVHLA---GQPCDMDAIMALAKRHGLPVIEDAAQAHGATYK-GKKV-GSFG 173 (374)
T ss_pred HHHHHHHccc-------------CCeEEEEehhc---cCCCCHHHHHHHHHHcCCeEEEEcchhccCeec-Cccc-cccc
Confidence 5778877764 23444444454 889999999999999999999999999887321 2211 1222
Q ss_pred CCCCCccEEEeCc--cchhcc-ccceeecC-HHHHHHHH---hcCCc-----------ccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTY--TKSFGS-MGGYVAGS-KSTIDYIR---ANSHV-----------RSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G~-~GG~v~gs-~~li~~l~---~~~~~-----------~~~s~s~~P~~~aaalaaL~~l 414 (430)
|+.+-|| .|-+++ -||+++.+ +++++.++ .+... .-|..-++-+++|-.+.-|+.+
T Consensus 174 ------d~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l 247 (374)
T COG0399 174 ------DIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERL 247 (374)
T ss_pred ------ceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHH
Confidence 3444444 366644 58888764 56665544 33332 2245567778888778878777
Q ss_pred Hc
Q psy2206 415 MG 416 (430)
Q Consensus 415 ~~ 416 (430)
.+
T Consensus 248 ~~ 249 (374)
T COG0399 248 DE 249 (374)
T ss_pred HH
Confidence 43
No 364
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0013 Score=66.71 Aligned_cols=129 Identities=21% Similarity=0.139 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++.++.. +.|. ..+.++++|+-....|.+.| |++|.++|++||+.|-+|-|-=.-.+-..|.-. .
T Consensus 114 ~e~v~~~i~~~------d~~~-~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~-~ 185 (342)
T COG2008 114 PEDVEAAIRPD------DIHH-APTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVAL-K 185 (342)
T ss_pred HHHHHHhhcCC------Cccc-CCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCH-H
Confidence 47777776542 1121 13557777777767799998 667778899999999999874211111111111 1
Q ss_pred ecCCCCCCccEEEeCccchhccccc-eeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMGG-YVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~GG-~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.+. ..+|++.-++||..+.++| .++++.++++.++.....+-...+-.-+.+++.+..|+
T Consensus 186 ~~~---~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~ 246 (342)
T COG2008 186 TIK---SYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALE 246 (342)
T ss_pred HHH---hhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHh
Confidence 121 3468999999999987765 56789999876654322211111123344555555553
No 365
>KOG1368|consensus
Probab=97.07 E-value=0.00069 Score=67.18 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC-cccCHH---HHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG-SIVRLP---EIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G-~i~~L~---~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
.+++|+.++.. ..+.|.| .+.+|.+|.-....| .+.||+ +|-+||++||+-|=+|-|.-+-.--..|-++-
T Consensus 136 ledIe~~ir~~----~GD~H~p-~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk 210 (384)
T KOG1368|consen 136 LEDIEAAIRVP----KGDCHMP-PTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVK 210 (384)
T ss_pred HHHHHHhhcCC----CCCccCC-CceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHH
Confidence 58888887642 1133444 467999999888777 777855 55677899999999988742211111222322
Q ss_pred eecCCCCCCccEEEeCccchhcc-ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGS-MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~-~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
+... ..|=+--.|||++|. .|..++|++++|+..+.......-+---+-+.||+++.+|+
T Consensus 211 ~i~~----~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~ 271 (384)
T KOG1368|consen 211 KICS----AFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALD 271 (384)
T ss_pred HHHH----hhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhh
Confidence 2111 124455689999986 57788999999976554333322222235567777777765
No 366
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=97.03 E-value=0.00098 Score=66.70 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=50.7
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIAS 139 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~ 139 (430)
||..+.+|++|...++ ++|+|+|||+||+. .+|.+.+++.+++++||.+.++++...|.
T Consensus 1 ~~~~~~~~~~~~~~g~----------------~~id~~~~~~~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~ 59 (360)
T TIGR00858 1 RPLDRGPGPEVVRDGR----------------RLLNFSSNDYLGLA-SHPEVIQAAQQGAEQYGAGSTASRLVSGN 59 (360)
T ss_pred CCcccCCCCeEEECCc----------------eEEecccCCcccCC-CCHHHHHHHHHHHHhcCCCCCCcCcccCC
Confidence 6889999999986554 89999999999998 58999999999999999887777665554
No 367
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=97.02 E-value=0.005 Score=66.40 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc-CCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e~~ 351 (430)
+++|+++|++....+ .+.++|+.-.--+.+|.+.||++|.++|++||+++.||=||+.+.+ -+..+.. ..
T Consensus 249 ~~~L~~~i~~~~~~g-------~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~--l~ 319 (522)
T TIGR03799 249 VDALRDKCAELAEQN-------IKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL--LK 319 (522)
T ss_pred HHHHHHHHHHHHHCC-------CCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH--hc
Confidence 799999997643111 1233333333344689999999999999999999999999874432 1111110 12
Q ss_pred CCCCCCccEEEeCccchh-cccc-ceeec-CHHHHHHHHh
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMG-GYVAG-SKSTIDYIRA 388 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~G-G~v~g-s~~li~~l~~ 388 (430)
++ ..+|.++.+.+|.+ +..| |++.. ++++.+.+..
T Consensus 320 gl--e~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~ 357 (522)
T TIGR03799 320 GI--ERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEH 357 (522)
T ss_pred Cc--hhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhcc
Confidence 23 25799999999955 4444 66544 4566554443
No 368
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=96.98 E-value=0.0018 Score=66.20 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=75.4
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceee
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVA 377 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~ 377 (430)
+|.+-..-+.+|...| ++++.|+++++||=++++|.. .++.++.|+++.|-.|++|.+| |++.
T Consensus 133 ~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~-----------~id~~~~d~~~~ssqK~lgP~Glg~l~ 196 (349)
T TIGR01364 133 YVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSR-----------PIDVSKFGLIYAGAQKNIGPAGLTVVI 196 (349)
T ss_pred EEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCc-----------cCCHHHccEEEEecccccCCCceEEEE
Confidence 4444444444677655 667778999999999987642 2333456799999999999888 8999
Q ss_pred cCHHHHHHHHhcCCc-----------ccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 378 GSKSTIDYIRANSHV-----------RSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 378 gs~~li~~l~~~~~~-----------~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.++++++.+...... ..+ .+++-..+.+..++|+.+.++.+.+...++.+
T Consensus 197 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~ 257 (349)
T TIGR01364 197 VRKDLLGRASRITPSMLNYKIHAENDSMY-NTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQ 257 (349)
T ss_pred ECHHHHhhcccCCCCcchHHHHHhcCCCC-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999988765332111 111 23455556667789999977645565555544
No 369
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=96.92 E-value=0.0038 Score=65.72 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc------CcEEEEeccccccc----cCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY------KAYLYVDEAHSIGA----LGP 342 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y------~~~LivDEAh~~G~----lG~ 342 (430)
+++|+++|.+ ++++|++-.+.+++|.+.|+++|.++|++| ++++.||=|++.++ .++
T Consensus 176 ~~~L~~~i~~-------------~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~ 242 (431)
T TIGR01788 176 PEQVVEAVDE-------------NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPD 242 (431)
T ss_pred HHHHHHHHhh-------------CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCC
Confidence 7888888865 356888888999999999999999999999 99999999998443 222
Q ss_pred CCCccceecCCCCCCccEEEeCccchh-cccc-ceeecCH
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSF-GSMG-GYVAGSK 380 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~ 380 (430)
. ...+. ...+|-+.-|.+|-+ |..| |++...+
T Consensus 243 ~----~~~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~ 276 (431)
T TIGR01788 243 L----EWDFR--LPRVKSINVSGHKYGLVYPGVGWVIWRD 276 (431)
T ss_pred c----hhhcC--CCCceEEEECchhccCCCCCcEEEEEeC
Confidence 1 11122 246788999999965 7776 7766543
No 370
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.92 E-value=0.0027 Score=72.33 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC-HHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR-LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~-L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++.++ ..++++|++-.+.+ .|.+.| +++|+++|+++|+++++|=|+..+..+ +. ..
T Consensus 615 le~L~~~i~~~----------~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~-----l~-~P 677 (939)
T TIGR00461 615 LVDLKNKAEQH----------GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG-----LT-SP 677 (939)
T ss_pred HHHHHHHHhhc----------CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCC-----CC-Cc
Confidence 47888888652 12456666655544 688877 999999999999999999999654322 11 11
Q ss_pred CCCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
+- ..+||+++|.+|+|+. +| |+++..+.+..++-
T Consensus 678 g~--~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lP 718 (939)
T TIGR00461 678 GD--LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLP 718 (939)
T ss_pred cc--cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcC
Confidence 11 2569999999998862 33 78888877665543
No 371
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0055 Score=61.63 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
|.++++.+.+ ...+|.+.+|.--+|...++.+|-++++++|++++.|=||+.|.+.- +
T Consensus 156 P~~~~~~~~d-------------d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~------~--- 213 (407)
T COG3844 156 PRALEEAITD-------------DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPV------D--- 213 (407)
T ss_pred hHHHHHhhcc-------------ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcce------e---
Confidence 7777777654 57899999998889999999999999999999999999999987632 1
Q ss_pred CCCCCccEEEeCccchh-cccc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG 373 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G 373 (430)
+....+|..+++--|.+ |.+|
T Consensus 214 Lh~~gaDfaigcsyKYLNgGPG 235 (407)
T COG3844 214 LHAAGADFAIGCSYKYLNGGPG 235 (407)
T ss_pred ecccCCCeeeeeeceeccCCCC
Confidence 22245789999999998 4455
No 372
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=96.80 E-value=0.0024 Score=63.83 Aligned_cols=104 Identities=25% Similarity=0.284 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|++.++.... |.+ +..+|.+|...+. .|.+.+ |++|.++|++||+.|.+|=|--.-..-..|..+.
T Consensus 108 ~~~l~~~~~~~~~------h~~-~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~ 180 (290)
T PF01212_consen 108 PEDLEAAIEEHGA------HHP-QPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLA 180 (290)
T ss_dssp HHHHHHHHHHHTG------TSG-GEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHH
T ss_pred HHHHHHHhhhccc------cCC-CccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHH
Confidence 7889999887421 222 4566666665543 477765 7888888999999999999841111111112223
Q ss_pred eecCCCCCCccEEEeCccchhccc-cceeecCHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSM-GGYVAGSKSTIDYIR 387 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~-GG~v~gs~~li~~l~ 387 (430)
+.. ..+|++.-+++|.+|++ |+++++++++++..+
T Consensus 181 e~~----~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~ 216 (290)
T PF01212_consen 181 EIA----AGADSVSFGGTKNGGAPGGAVLAGNKEFIAKAR 216 (290)
T ss_dssp HHH----TTSSEEEEETTSTT-SSSEEEEEESHHHHHHHH
T ss_pred HHh----hhCCEEEEEEEcccccccceEEEechHHHHHHH
Confidence 333 24699999999999874 578899999775443
No 373
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=96.79 E-value=0.00098 Score=66.62 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=35.9
Q ss_pred ceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 95 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 95 ~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
|++||||||+|||.+ +||.++++.++++++|+.+-++.+...|
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~ 43 (349)
T cd06454 1 KKVLNFCSNDYLGLA-NHPEVIEAAKEALDKYGVGAGGSRLISG 43 (349)
T ss_pred CCceecccCCccccC-CCHHHHHHHHHHHHHhCCCCCCcCeecC
Confidence 479999999999999 5899999999999999876555554433
No 374
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=96.75 E-value=0.0027 Score=65.00 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC--cccCHHHHHHHHHhcCcEEEEeccccccc----cCCCCC-
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGA----LGPTGR- 345 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~----lG~~Gr- 345 (430)
+.|.|+++.+.. .-++-|--+=|.+.| ...+++++++++++|++.+|+|-.-+.-. +|-.+.
T Consensus 126 ~~Dye~AI~e~T-----------a~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep 194 (367)
T PF03841_consen 126 LSDYEKAITENT-----------AALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEP 194 (367)
T ss_dssp ----------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------
T ss_pred cccccccccccc-----------cccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcccc
Confidence 678888876521 112223335565554 23479999999999999999998642211 111111
Q ss_pred ccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 346 GVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 346 G~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-+.++. ...+|+++-|-.|.+| .+.|+|+|.+++|+.++.+ +..-..-..-..+++..++|+.+..+
T Consensus 195 ~v~~~~---~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~--pl~RalrvdK~tla~L~atL~~Y~~~ 262 (367)
T PF03841_consen 195 TVQEYL---AAGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKH--PLGRALRVDKLTLAALEATLRLYLDP 262 (367)
T ss_dssp ----CC---CCT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHH--HHTTT-B--HHHHHHHHHHHHH----
T ss_pred HHHHHh---hcCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhC--CCcceEeeCHHHHHHHHHHHHHHHHh
Confidence 111222 2467999999999996 4569999999999999874 33333445778888888999988753
No 375
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=96.74 E-value=0.0034 Score=63.56 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCc
Q psy2206 50 YSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCA 129 (430)
Q Consensus 50 ~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~g 129 (430)
..-.||+.+ +.+.+..|++|...+ +++|+|++++++||. .+|.+++++.+++++||.+
T Consensus 15 ~~~~~~~~~-----~~~~~~~g~~~~~~g----------------~~~id~~~~~~~g~~-~~~~v~~a~~~~~~~~~~~ 72 (385)
T PRK05958 15 RAAGLYRSL-----RPREGGAGRWLVVDG----------------RRMLNFASNDYLGLA-RHPRLIAAAQQAARRYGAG 72 (385)
T ss_pred HHcCCCccc-----cccccCCCceeEeCC----------------ceEEEeeCCCcccCC-CCHHHHHHHHHHHHhcCCC
Confidence 334488888 889999999998533 589999999999997 4899999999999999988
Q ss_pred cccCCccccc
Q psy2206 130 LCSPSGEIAS 139 (430)
Q Consensus 130 s~~sr~~~g~ 139 (430)
.++++...|.
T Consensus 73 ~~~~~~~~g~ 82 (385)
T PRK05958 73 SGGSRLVTGN 82 (385)
T ss_pred CCCcCcccCC
Confidence 8777766553
No 376
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=96.65 E-value=0.024 Score=60.21 Aligned_cols=101 Identities=22% Similarity=0.203 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccce-ec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE-YF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e-~~ 351 (430)
+++|++++.+..+. . +||.-.-..++|.+.|+++|.++|++|++++-||=|++..++ +.-+.... .+
T Consensus 195 ~~~l~~~i~~~t~~---------g--~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~-pf~~~~~~~~f 262 (460)
T COG0076 195 VDALEEAIDENTIG---------G--VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLL-PFLEPDGRWDF 262 (460)
T ss_pred HHHHHHHHHhhccC---------c--eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceee-cccCccchhhc
Confidence 78999999874311 1 244444455689999999999999999999999999874432 11111111 24
Q ss_pred CCCCCCccEEEeCccchhcc-cc-ceeec-CH-HHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS-MG-GYVAG-SK-STIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~-~G-G~v~g-s~-~li~~l~ 387 (430)
++ ..+|=++.+++|.+.. +| |++.. ++ ++.+.+.
T Consensus 263 ~l--~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~ 300 (460)
T COG0076 263 GL--EGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILI 300 (460)
T ss_pred CC--CCceEEEECcccccCCCCCceEEEEECHHHhhhhhh
Confidence 44 3678889999997643 33 55544 55 3555554
No 377
>PRK05367 glycine dehydrogenase; Provisional
Probab=96.60 E-value=0.0043 Score=71.26 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcc-cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSI-VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i-~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++|++++.+. ..+.++|++-..... |.+ .|+++|+++|+++|++++||.||..+.++-. ..
T Consensus 627 ~~~L~~~i~~~----------~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~------~p 689 (954)
T PRK05367 627 LDDLRAKAEEH----------ADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLA------RP 689 (954)
T ss_pred HHHHHHHHhcc----------CCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCC------Ch
Confidence 46777777542 113444444444333 554 6899999999999999999999975544311 11
Q ss_pred CCCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
+. ..+|+++++++|.|+. +| |+++..+.+..++.
T Consensus 690 g~--~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lp 730 (954)
T PRK05367 690 GD--IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLP 730 (954)
T ss_pred hh--cCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCC
Confidence 11 2469999999999863 22 57776666555543
No 378
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0066 Score=62.20 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=60.7
Q ss_pred CceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce-ecCCC----CCCccEEEeCcc
Q psy2206 295 WRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE-YFGID----PREVDILMGTYT 366 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e-~~g~~----~~~~dIv~~TlS 366 (430)
.+.++++-....+|+|.-.. +.+|+++.++.+.+.++|=|| -| || .|+-+ .+++. ...--++..|||
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AY-QG-F~---~GleeDa~~lR~~a~~~~~~lva~S~S 245 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAY-QG-FA---DGLEEDAYALRLFAEVGPELLVASSFS 245 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhh-hh-hc---cchHHHHHHHHHHHHhCCcEEEEehhh
Confidence 46778888889999996543 899999999999999999998 44 32 33321 11110 011168899999
Q ss_pred chhcccc----c--eeecCHHHHHHHHh
Q psy2206 367 KSFGSMG----G--YVAGSKSTIDYIRA 388 (430)
Q Consensus 367 Ka~G~~G----G--~v~gs~~li~~l~~ 388 (430)
|.||+-| + +|+.+++.++.+..
T Consensus 246 KnfgLYgERVGa~~vva~~~~~a~~v~s 273 (396)
T COG1448 246 KNFGLYGERVGALSVVAEDAEEADRVLS 273 (396)
T ss_pred hhhhhhhhccceeEEEeCCHHHHHHHHH
Confidence 9999755 3 34556666655443
No 379
>PRK12566 glycine dehydrogenase; Provisional
Probab=96.39 E-value=0.016 Score=66.12 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
.++|++++.+. ..+.++|++-.+.+..+-..|+++|+++++++|+++++|=||..+..+- .....
T Consensus 628 le~L~a~I~~~----------~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l---~~Pg~-- 692 (954)
T PRK12566 628 LDDLKAKAAAA----------GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGL---ARPAD-- 692 (954)
T ss_pred HHHHHHHhhcc----------CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCC---CChhh--
Confidence 47788887642 1246666666555544445569999999999999999999997543221 10112
Q ss_pred CCCCCccEEEeCccchhccc---c----ceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFGSM---G----GYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~---G----G~v~gs~~li~~l~~ 388 (430)
-++||++++++|+|+.+ | |.++..+.+..+++.
T Consensus 693 ---~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~ 732 (954)
T PRK12566 693 ---IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVAN 732 (954)
T ss_pred ---cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccC
Confidence 24599999999999631 2 455555656666663
No 380
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=96.31 E-value=0.0083 Score=63.17 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc-cCCCCcccC---HHHHHHHHHhcCcEEEEecccccc-cc-------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGI-FSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIG-AL------- 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v-~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G-~l------- 340 (430)
+++|+++|++. |. .+..++.+.-+ .+..|.+.+ +.++.++|++||+.+.+|=|--+- .+
T Consensus 169 l~~le~~I~~~---g~------~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~ 239 (467)
T TIGR02617 169 LEGLERGIEEV---GP------NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREA 239 (467)
T ss_pred HHHHHHHHhhc---CC------CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcch
Confidence 68888888763 11 11222222222 223565555 888899999999999999764211 11
Q ss_pred CCCCCccceec-CCCCCCccEEEeCccchhccc-cceeecCHH
Q psy2206 341 GPTGRGVTEYF-GIDPREVDILMGTYTKSFGSM-GGYVAGSKS 381 (430)
Q Consensus 341 G~~GrG~~e~~-g~~~~~~dIv~~TlSKa~G~~-GG~v~gs~~ 381 (430)
+..+..+.+.. .+ ....|.++.|+||.+|.+ ||+++++++
T Consensus 240 ~a~~~si~eI~rE~-~~~aDsvt~slsKglgApvGg~Lag~d~ 281 (467)
T TIGR02617 240 EYKNWSIEQITRET-YKYADMLAMSAKKDAMVPMGGLLCFKDD 281 (467)
T ss_pred hhcCCCHHHHHHHh-hccCCEEEEEcCCCCCCcccceEEecch
Confidence 22233332221 00 024588999999999875 999999765
No 381
>PLN02880 tyrosine decarboxylase
Probab=96.17 E-value=0.0098 Score=63.67 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccC-CCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG-PTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG-~~GrG~~e~~ 351 (430)
+++|++.|++....|. ...+||...=-.++|.+.||++|.++|++||+|+-||=||+.+++- +.-+.. ..
T Consensus 223 ~~~L~~~i~~~~~~g~-------~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~--l~ 293 (490)
T PLN02880 223 PELLSEAISTDLSSGL-------IPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHY--ID 293 (490)
T ss_pred HHHHHHHHHHHHHCCC-------ccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHH--hc
Confidence 7999999987543221 2334444333456799999999999999999999999999866531 111110 12
Q ss_pred CCCCCCccEEEeCccchhccc-c-ceeecC
Q psy2206 352 GIDPREVDILMGTYTKSFGSM-G-GYVAGS 379 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~-G-G~v~gs 379 (430)
|+ ..+|-++..++|-+..+ | |++..+
T Consensus 294 gi--e~aDSit~d~HKwl~~P~~~g~llvr 321 (490)
T PLN02880 294 GV--EEADSFNMNAHKWFLTNFDCSLLWVK 321 (490)
T ss_pred Cc--hhcCEEEECchhhcCCCccEEEEEEe
Confidence 33 25688999999998653 2 555543
No 382
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=96.13 E-value=0.01 Score=60.46 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=48.0
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
+.+..+.|.+|.+.++ ++|||++++||||. .+|.+++++.+++++|+...++.+...|
T Consensus 18 ~~~~~~~g~~~~~~g~----------------~~id~~~~~~~g~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~g 75 (385)
T TIGR01825 18 RVLESAQGPRVRVNGK----------------EVINLSSNNYLGFA-DHPRLKEAAAQAIQQYGVGAGAVRTIAG 75 (385)
T ss_pred cccccCCCceEEECCc----------------eEEEeeccCccCCC-CCHHHHHHHHHHHHHcCCCCCccCcccC
Confidence 6788999999986544 89999999999998 5899999999999999876665544444
No 383
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=95.93 E-value=0.0099 Score=60.79 Aligned_cols=67 Identities=24% Similarity=0.407 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHHH
Q psy2206 312 IVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTIDY 385 (430)
Q Consensus 312 i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~~ 385 (430)
+..+++++++.|+. +++++||+.|+-.+ |......-.+||++|||=|-.| .+||||+|.+++++.
T Consensus 174 i~~I~~~i~~vk~~~p~~iifVDNCYGEFv---------E~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~ 244 (403)
T PF06838_consen 174 IEEIKEIIKFVKEINPDVIIFVDNCYGEFV---------ETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVER 244 (403)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEE-TTTTTT---------SSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEeCCcceec---------cccCccccchhheeccceeCCCCCccCcCCEEechHHHHHH
Confidence 44577777777764 88999999986432 1111111246999999999876 578999999999987
Q ss_pred HH
Q psy2206 386 IR 387 (430)
Q Consensus 386 l~ 387 (430)
.-
T Consensus 245 ~a 246 (403)
T PF06838_consen 245 AA 246 (403)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 384
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=95.66 E-value=0.02 Score=58.38 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=47.9
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIAS 139 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~ 139 (430)
.+....|++|+.. +++++|||++++||||. .+|.+.+++.++++++|.+.++++...|+
T Consensus 27 ~~~~~~~~~~~~~---------------~g~~~i~l~~~~~~~~~-~~~~i~~a~~~~~~~~~~~~~~~~~~~G~ 85 (397)
T PRK06939 27 VITSPQGADITVA---------------DGKEVINFCANNYLGLA-NHPELIAAAKAALDSHGFGMASVRFICGT 85 (397)
T ss_pred cccCCCCceEEec---------------CCCeEEEeeccCccccC-CCHHHHHHHHHHHHHcCCCCcccccccCC
Confidence 4567788887641 23589999999999999 58999999999999998877777766665
No 385
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=95.34 E-value=0.033 Score=57.64 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccc--eeecCHHHHHHH
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGG--YVAGSKSTIDYI 386 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG--~v~gs~~li~~l 386 (430)
+|...|+++++... +++++|||=+-++|.. .+.+ +++|+++.+--|++++++| +++.+++.++..
T Consensus 140 TGv~npv~~i~~~~--~~~lliVDavSs~g~~---------~l~~--d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~ 206 (374)
T TIGR01365 140 SGVRVPNGDFIPAD--REGLTICDATSAAFAQ---------DLDY--HKLDVVTFSWQKVLGGEGAHGMLILSPRAVARL 206 (374)
T ss_pred hheecccccccccc--CCCcEEEEccchhcCC---------CCCh--hHCcEEEEechhccCCCCceEEEEECHHHHHHH
Confidence 68888887665322 5899999988665421 2333 4689999999999998774 677788877665
Q ss_pred H
Q psy2206 387 R 387 (430)
Q Consensus 387 ~ 387 (430)
.
T Consensus 207 ~ 207 (374)
T TIGR01365 207 E 207 (374)
T ss_pred h
Confidence 4
No 386
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=95.13 E-value=0.08 Score=54.66 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHH----HhcCcEEEEecccccccc-CCCCC--
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLK----NKYKAYLYVDEAHSIGAL-GPTGR-- 345 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La----~~y~~~LivDEAh~~G~l-G~~Gr-- 345 (430)
++.+|+++++. +.-+-+..+.-..+++|.+..-+.+.+|+ ...|+.++-|+||+++-+ +..-.
T Consensus 160 mD~Ve~LV~~D----------~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~ 229 (425)
T PF12897_consen 160 MDMVEELVAED----------PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDA 229 (425)
T ss_dssp HHHHHHHTHTS----------TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS---
T ss_pred HHHHHHHHhcC----------CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchh
Confidence 57888887652 11233455555667799988766556665 357999999999998877 43222
Q ss_pred -----ccceecCCCCCCccEEEeCccc-hhcccc-ceeecCHHHHHHHHhc
Q psy2206 346 -----GVTEYFGIDPREVDILMGTYTK-SFGSMG-GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 346 -----G~~e~~g~~~~~~dIv~~TlSK-a~G~~G-G~v~gs~~li~~l~~~ 389 (430)
..|+..|- | +..++.+|.|| +|...| +|+++|++-+++++..
T Consensus 230 ~~nil~~~~~AGn-p-drv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~ 278 (425)
T PF12897_consen 230 LLNILDACAKAGN-P-DRVYVFASTSKITFPGAGVAFFAASEANLAWIKKH 278 (425)
T ss_dssp ---HHHHHHHTT--T-TSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHH
T ss_pred hhHHHHHHHHcCC-C-CeEEEEecccccccCCcceeeeecCHHHHHHHHHH
Confidence 12334453 3 45688999999 666555 8999999999888763
No 387
>PLN02263 serine decarboxylase
Probab=94.82 E-value=0.62 Score=49.75 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCc-----EEEEeccccccccCCCCCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKA-----YLYVDEAHSIGALGPTGRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~-----~LivDEAh~~G~lG~~GrG~ 347 (430)
+++|++.|.+.. .+..+|+.-.--.+.|.+-||++|.++|++||+ ||=||=|++-.++ +.-+..
T Consensus 215 ~~aL~~aI~~d~----------~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l-Pf~~~~ 283 (470)
T PLN02263 215 CADFKAKLLANK----------DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMM-PFVKRA 283 (470)
T ss_pred HHHHHHHHHhCC----------CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHh-hhcccc
Confidence 789999887631 123344433334468999999999999999997 9999999864333 211111
Q ss_pred ceecCCCCCCccEEEeCccchhccc--cceeecCHHHHH
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSM--GGYVAGSKSTID 384 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~--GG~v~gs~~li~ 384 (430)
+.+... ..+|=+..+.+|-++++ .|++......++
T Consensus 284 -~~~df~-~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~ 320 (470)
T PLN02263 284 -PKVTFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHIN 320 (470)
T ss_pred -cccCCC-cCccEEEECCccccCCCcCEEEEEEehhhHh
Confidence 112221 23777888999998753 366666655443
No 388
>PRK05367 glycine dehydrogenase; Provisional
Probab=94.62 E-value=0.073 Score=61.41 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=56.3
Q ss_pred EcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccch-----hcccc-ce
Q psy2206 302 VEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKS-----FGSMG-GY 375 (430)
Q Consensus 302 ~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa-----~G~~G-G~ 375 (430)
+-.+-+..|.+.|+++|+++|+++|++++||=.+..+.+... ...+ .+||++++..|- ||.+| ||
T Consensus 211 lvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~----pge~-----GaDi~vgs~qkfg~P~g~GGP~aGf 281 (954)
T PRK05367 211 LLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP----PGEM-----GADIAVGSAQRFGVPMGFGGPHAAY 281 (954)
T ss_pred EEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC----hhhc-----CCCEEEeeCcccCCCCCCCCCCEEE
Confidence 333446789999999999999999999999876633322211 1222 459999999996 66665 89
Q ss_pred eecCHHHHHHHH
Q psy2206 376 VAGSKSTIDYIR 387 (430)
Q Consensus 376 v~gs~~li~~l~ 387 (430)
++.++++++.+.
T Consensus 282 lavr~~~~r~lp 293 (954)
T PRK05367 282 FAVRDAYKRSMP 293 (954)
T ss_pred EEECHHHHhhCC
Confidence 999888776653
No 389
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=94.61 E-value=0.15 Score=52.75 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC-HHHHHHHHHhcCcEEEEeccccccccCCCCCccc---
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR-LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT--- 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~-L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~--- 348 (430)
.+.+|+++++.. ...++.|...+....+..+| +.+|.++|++||+..++-.||++-. .-.+
T Consensus 141 ~~~ie~~i~~~G----------~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~-----~~~~~~i 205 (389)
T PF05889_consen 141 LEAIEAKIEELG----------ADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQS-----SKCMHLI 205 (389)
T ss_dssp HHHHHHHHHHHC----------GGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT------HHHHHHH
T ss_pred HHHHHHHHHHhC----------CCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhH-----HHHHHHH
Confidence 366777776531 13466667777777788998 9999999999999999999987511 0000
Q ss_pred -eecCCCCCCccEEEeCccchh--ccccceeec-CHHHHHHHHh
Q psy2206 349 -EYFGIDPREVDILMGTYTKSF--GSMGGYVAG-SKSTIDYIRA 388 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~--G~~GG~v~g-s~~li~~l~~ 388 (430)
+.+-. ..+|+.+.|+.|-| ++-|+.|++ .+..++.+..
T Consensus 206 ~~a~~~--GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~ 247 (389)
T PF05889_consen 206 QQAWRV--GRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSK 247 (389)
T ss_dssp HHHHHH--STCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHH
T ss_pred HHHHhc--CCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHH
Confidence 01111 24688889999988 333444544 4567777765
No 390
>PLN02452 phosphoserine transaminase
Probab=94.52 E-value=0.044 Score=56.57 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=65.9
Q ss_pred CCc-ccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHH
Q psy2206 309 DGS-IVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYI 386 (430)
Q Consensus 309 ~G~-i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l 386 (430)
+|. +.|++++. +++++||=+.++|.. .++.++.++...|-.|.+|.+| |+++.++++++.+
T Consensus 158 tGv~~~~~~~i~------~~~lvVDa~Ss~g~~-----------pidv~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~~~ 220 (365)
T PLN02452 158 HGVEFKDYPDVG------NVPLVADMSSNFLSK-----------PVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNA 220 (365)
T ss_pred CcEecCcccccC------CCeEEEECCccccCc-----------ccCHHHcCEEEEecccccCCCCeEEEEEcHHHHhhc
Confidence 577 46777764 389999999876531 1222334556679999999888 8899999888765
Q ss_pred HhcCCccc----------ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 387 RANSHVRS----------YATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 387 ~~~~~~~~----------~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
......+. +-.++|-..+.+..++|+.++++.|.+...+|-
T Consensus 221 ~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~ 271 (365)
T PLN02452 221 RPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRN 271 (365)
T ss_pred ccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 43222111 002345556666778999998765655555543
No 391
>PLN02590 probable tyrosine decarboxylase
Probab=94.46 E-value=0.15 Score=55.42 Aligned_cols=96 Identities=22% Similarity=0.176 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+++|++.|++....|. ...+||...=-..+|.+.||++|.++|++||+||=||=||+..+ +-+..+.. ..
T Consensus 271 ~~~L~~~I~~d~~~g~-------~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~--~~ 341 (539)
T PLN02590 271 PESLEEAISHDLAKGF-------IPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF--ID 341 (539)
T ss_pred HHHHHHHHHHHHhcCC-------CcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHH--hc
Confidence 7999999987543221 23334433333447999999999999999999999999987544 22222221 13
Q ss_pred CCCCCCccEEEeCccchhccc--cceeecC
Q psy2206 352 GIDPREVDILMGTYTKSFGSM--GGYVAGS 379 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~--GG~v~gs 379 (430)
|+ +.+|=+.-..+|-+..+ .|++...
T Consensus 342 Gi--e~ADSit~D~HK~l~~p~~cg~llvr 369 (539)
T PLN02590 342 GI--ENADSFNMNAHKWLFANQTCSPLWVK 369 (539)
T ss_pred CC--ccCCEEEECchhhcCcCcCEEEEEec
Confidence 44 35688888999998643 3554443
No 392
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=94.40 E-value=0.024 Score=57.93 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=22.9
Q ss_pred ccccCCCCCChhhHHHHHHHHhhhC
Q psy2206 103 YNYLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 103 yNYLGfa~~~~~~~~a~~~al~~yG 127 (430)
||||||+ +||.+++++.+++++||
T Consensus 27 ~~ylgl~-~~~~~~~~~~~~~~~~~ 50 (346)
T TIGR03576 27 YDLTGLA-GGFKIDEEDLELLETYV 50 (346)
T ss_pred cccccCC-CChhHHHHHHHHHHHhc
Confidence 7999999 69999999999999996
No 393
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=94.32 E-value=0.18 Score=52.10 Aligned_cols=99 Identities=30% Similarity=0.364 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceE-EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKI-LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~-lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~ 350 (430)
+++|+++|++....| .++ +||.-.=-.++|.+.|+++|.++|++|++||=||=|++..+ +-+.-+.. .
T Consensus 178 ~~~L~~~l~~~~~~g--------~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~--~ 247 (373)
T PF00282_consen 178 IEALEKALEKDIANG--------KTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHL--L 247 (373)
T ss_dssp HHHHHHHHHHHHHTT--------EEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGG--G
T ss_pred HHHhhhhhccccccc--------ccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccccccccccccc--c
Confidence 689999998754322 233 33333334568999999999999999999999999987422 33333321 2
Q ss_pred cCCCCCCccEEEeCccchhcccc--ceeec-CHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMG--GYVAG-SKSTI 383 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~G--G~v~g-s~~li 383 (430)
.++ ..+|=+....+|.++.+- |++.. ++...
T Consensus 248 ~gi--~~adSit~d~HK~l~~P~~~~~~l~r~~~~l 281 (373)
T PF00282_consen 248 FGI--ERADSITIDPHKWLGVPYGCGVLLVRDKSDL 281 (373)
T ss_dssp TTG--GGESEEEEETTTTTS-SSS-EEEEESSGGGH
T ss_pred ccc--ccccccccchhhhhcCCccceeEEeecccch
Confidence 344 357888889999997643 55544 44333
No 394
>KOG0629|consensus
Probab=94.02 E-value=0.18 Score=52.63 Aligned_cols=118 Identities=21% Similarity=0.193 Sum_probs=73.5
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC----------HHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA----------PSSLEAGLQKALLEGQPHSGKPWRKILIV 301 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi 301 (430)
.+++-|.|- +.+ =.+.+++.-+|.|+-..+. ++|||+.|.+....|. .. ++|
T Consensus 196 p~lilFtSe------esH----YSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~-------~P-f~v 257 (510)
T KOG0629|consen 196 PPLILFTSE------ESH----YSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGG-------VP-FFV 257 (510)
T ss_pred CcEEEEecc------cch----hhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCC-------CC-eEE
Confidence 567888772 222 2244455667877655443 7999999987653332 12 333
Q ss_pred EcCccC-CCCcccCHHHHHHHHHhcCcEEEEecccccccc-CCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 302 VEGIFS-MDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 302 ~E~v~s-m~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
.-+.-+ --|...||+.|+++|++|+.|+=||-|.+-|++ .+..|. -.-|++ +++=+.-+-+|-+|.
T Consensus 258 naTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~--kl~Gie--ra~SvtwnpHK~~ga 325 (510)
T KOG0629|consen 258 NATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH--KLTGIE--RANSVTWNPHKLMGA 325 (510)
T ss_pred EecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh--hccCcc--ccCceeecHHHhhcC
Confidence 333211 137888999999999999999999999876553 332222 123443 345555667787764
No 395
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=93.71 E-value=0.88 Score=50.17 Aligned_cols=107 Identities=23% Similarity=0.154 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHH---HhcCc--EEEEeccccccc---c-CCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLK---NKYKA--YLYVDEAHSIGA---L-GPT 343 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La---~~y~~--~LivDEAh~~G~---l-G~~ 343 (430)
+++|++.|++....|.| ..+||.-.=-..+|.+-||++|.+|| +++|+ ||=||=|++.-+ + .+.
T Consensus 262 ~~~L~~~I~~~~~~g~p-------~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~ 334 (608)
T TIGR03811 262 INELEKIIRKLAAEKTP-------ILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDED 334 (608)
T ss_pred HHHHHHHHHHHHhcCCC-------eEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhcccc
Confidence 69999999875433322 22333222234479999999999999 67887 588999987421 1 111
Q ss_pred CC----------------------ccc-----eecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHh
Q psy2206 344 GR----------------------GVT-----EYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 344 Gr----------------------G~~-----e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~ 388 (430)
+. .+. ..-++ ..+|=+.-.++|.+.. .|+++.-++.+.+.+..
T Consensus 335 ~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gl--e~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~ 407 (608)
T TIGR03811 335 DNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAI--SEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISY 407 (608)
T ss_pred ccccccchhhcccccccccccccccccHhHHHHHhcC--cCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhc
Confidence 00 000 01133 3578788899998764 34456666666665543
No 396
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=92.13 E-value=0.13 Score=51.49 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=49.0
Q ss_pred cccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHH
Q psy2206 311 SIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTID 384 (430)
Q Consensus 311 ~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~ 384 (430)
.++++++++.+.++- +++++||..|+-.+ |......-.+|++.|||=|--| .+|||++|.+++++
T Consensus 184 ~I~eI~~~i~~vk~inpn~ivFVDNCYGEFv---------E~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve 254 (416)
T COG4100 184 SIAEIEEMITFVKEINPNVIVFVDNCYGEFV---------EEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE 254 (416)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeccchhhh---------hccCccccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence 455678888887764 78999999986433 2111111356999999999775 47899999999887
Q ss_pred HHH
Q psy2206 385 YIR 387 (430)
Q Consensus 385 ~l~ 387 (430)
...
T Consensus 255 ~~~ 257 (416)
T COG4100 255 AAA 257 (416)
T ss_pred hhc
Confidence 643
No 397
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=92.07 E-value=0.6 Score=54.15 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=53.5
Q ss_pred cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc------cee
Q psy2206 303 EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG------GYV 376 (430)
Q Consensus 303 E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G------G~v 376 (430)
-.+.+..|.+.|+++|+++|+++|++++| -++..+..+-. -...+ .+||++++..|-.+..| ||+
T Consensus 240 vq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~---~pge~-----GADi~vgsgqKwg~P~G~GGP~aGfl 310 (993)
T PLN02414 240 VQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLK---PPGEW-----GADIVVGSAQRFGVPMGYGGPHAAFL 310 (993)
T ss_pred EecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCC---CHhhc-----cCcEEEECCCccccCCCCCCCCeeEE
Confidence 34445689999999999999999999999 66665432110 01122 45999999988764334 899
Q ss_pred ecCHHHHHHH
Q psy2206 377 AGSKSTIDYI 386 (430)
Q Consensus 377 ~gs~~li~~l 386 (430)
+.++++.+.+
T Consensus 311 avr~~~~r~~ 320 (993)
T PLN02414 311 ATSQEYKRLM 320 (993)
T ss_pred EECHHHHhhC
Confidence 8888876644
No 398
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=91.82 E-value=0.1 Score=54.59 Aligned_cols=40 Identities=10% Similarity=-0.096 Sum_probs=35.4
Q ss_pred eeEEeeeccccCCCCCChhhHHHHHHHH-hhhCCccccCCcccccc
Q psy2206 96 TCLNLASYNYLGFGENTGLCTERSKESV-KQSGCALCSPSGEIASM 140 (430)
Q Consensus 96 ~~lnl~SyNYLGfa~~~~~~~~a~~~al-~~yG~gs~~sr~~~g~~ 140 (430)
.+-+++||||+ +|.+++++..++ .+||.|++|||...|+-
T Consensus 30 ~~~l~~sen~~-----~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~ 70 (416)
T PRK13034 30 HLELIASENFT-----SPAVMEAQGSVLTNKYAEGYPGKRYYGGCE 70 (416)
T ss_pred CeeecccccCC-----CHHHHHHhcchhhcCCCCCCCCCcccCCCh
Confidence 35567999998 799999999995 99999999999988865
No 399
>KOG2467|consensus
Probab=91.80 E-value=0.58 Score=48.13 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=45.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccccceeec
Q psy2206 311 SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAG 378 (430)
Q Consensus 311 ~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~v~g 378 (430)
...+.+.++++|++-|++|++|=||-.|+... |+... .-+..|||+.|.+|++ |.-||.|.-
T Consensus 202 R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA---~vips---PFey~DiVTTTTHKsLRGPRg~mIFy 264 (477)
T KOG2467|consen 202 RLIDYARFRKIADKVGAYLMADMAHISGLVAA---GVIPS---PFEYCDIVTTTTHKSLRGPRGAMIFY 264 (477)
T ss_pred hhccHHHHHHHHHhcCceeehhhhhHHHHHhc---ccCCC---cccccceeeccccccccCCcceeEEE
Confidence 34578999999999999999999998776532 33211 1134599999999999 666776643
No 400
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=89.66 E-value=0.77 Score=48.45 Aligned_cols=80 Identities=24% Similarity=0.315 Sum_probs=48.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++..|++..+. ..|.+.++.+|.++++++|+++|+ -+--. .++ .....|- -.+||++|. +|.||.+
T Consensus 197 ~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~-aL~-----~l~~Pge--~GADI~vg~-~Q~fg~p~~~ 265 (429)
T PF02347_consen 197 DTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPN-ALG-----GLKSPGE--YGADIVVGE-HQTFGIPMGF 265 (429)
T ss_dssp TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCC-GCC-----TC--GGG--GT-SEEEEC-CTTTT---CC
T ss_pred CeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHH-HHh-----CcCChhh--cCccEEeeC-CCCCcccCCC
Confidence 57778887774 469999999999999999999887 33211 121 1122221 135899888 9999742
Q ss_pred ---c-ceeecCHHHHHHH
Q psy2206 373 ---G-GYVAGSKSTIDYI 386 (430)
Q Consensus 373 ---G-G~v~gs~~li~~l 386 (430)
| |+++.+++++..+
T Consensus 266 GGP~~G~~a~~~~l~r~l 283 (429)
T PF02347_consen 266 GGPGAGFFAVREDLVRQL 283 (429)
T ss_dssp C-S--EEEEE-GGGGGGS
T ss_pred CCCCeeeEEEhhhhhhhC
Confidence 2 7888887765544
No 401
>KOG1412|consensus
Probab=89.63 E-value=0.87 Score=45.99 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=57.7
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccc-cCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~-lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
..++|+--.-++++|.=.- +..|.++.++.+.+.+.|-||- |+ -|.--+ .++-.+.++...--+++.||+|-||
T Consensus 178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQ-GfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfG 256 (410)
T KOG1412|consen 178 GSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQ-GFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFG 256 (410)
T ss_pred CcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhc-ccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcc
Confidence 4545555555898885432 8889999999999999999984 43 232212 1111111221111578999999999
Q ss_pred ccc---c---eeecCHHHHHHHHh
Q psy2206 371 SMG---G---YVAGSKSTIDYIRA 388 (430)
Q Consensus 371 ~~G---G---~v~gs~~li~~l~~ 388 (430)
+.+ | ++.-++.++..+..
T Consensus 257 lYneRvGnltvv~~n~a~i~~v~S 280 (410)
T KOG1412|consen 257 LYNERVGNLTVVVNNPAVIAGVKS 280 (410)
T ss_pred cccccccceEEEecChhHHHHHHH
Confidence 865 3 45566777765554
No 402
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=89.20 E-value=0.44 Score=48.30 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=39.3
Q ss_pred cCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhhCC
Q psy2206 62 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGC 128 (430)
Q Consensus 62 ~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~yG~ 128 (430)
+...+.+..|.++... +++++|||+| |||||.+ +|.+.+++.+++++++.
T Consensus 9 ~~~~~~~~~g~~~~~~---------------~g~~~id~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~ 61 (379)
T TIGR00707 9 LPVKIVRGKGAYVYDV---------------NGKEYLDFVAGIAVNSLGHA--HPKLVEALKEQLEKLVH 61 (379)
T ss_pred CCccEEEeecCEEEeC---------------CCCEEEEcCcchhhccCCCC--CHHHHHHHHHHHhhccc
Confidence 4445677777777532 2358999999 8999985 79999999999999864
No 403
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=88.84 E-value=0.99 Score=46.69 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=65.3
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHHH
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~ 387 (430)
+|...| ++.+.+++++|+|=+-+++. ..+.+ ++.|++..+--|++|.+| ++++.+++.++...
T Consensus 156 tGv~~~-----~~~~~~~~llvvD~sS~~~s---------~pid~--~~~dvi~agsQKnlgP~Gltvvivs~~al~~~~ 219 (364)
T PRK12462 156 EGLQFP-----DAAGLPDSPLIADMSSDFMS---------RPFDV--EAYGMVYAHAQKNLGPAGVTVAIIRRALLERVP 219 (364)
T ss_pred ceEecC-----cccccCCCeEEEEcCchhhC---------CCCCh--HHccEEEeeccccCCCCceEEEEECHHHHhhcc
Confidence 466554 33334689999998855432 12333 456999999999999777 67788888876544
Q ss_pred hcCCc-----------ccccCCCcHHHHHHHHHHHHHHHcc-CCchHHHhhh
Q psy2206 388 ANSHV-----------RSYATSMPPPVAMQILTSMRIIMGL-ENGDEGNVRH 427 (430)
Q Consensus 388 ~~~~~-----------~~~s~s~~P~~~aaalaaL~~l~~~-~~~~~~~~r~ 427 (430)
..... ..+. ++|-....++..+|+.|+++ .|.+.+.+|-
T Consensus 220 ~~~p~~ldy~~~~~~~s~~n-TPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~ 270 (364)
T PRK12462 220 DTLPPMLDFRTHVEHRSNYN-TPPVFAIYVMALVLRWIRDEIGGVHAMRDIN 270 (364)
T ss_pred ccCCchhhHHHHHhcCCCCC-CchHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 32111 1222 34455566677789999877 5766666554
No 404
>KOG0258|consensus
Probab=86.50 E-value=1.9 Score=44.80 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC--c-
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR--G- 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr--G- 346 (430)
.++|++.++++. .+- .-+++||+ .+-+++|.+.. +++|+.+|.+++++|+.||+|---++-..-+ .
T Consensus 200 ~~el~~~~~eA~-k~i------~~r~lvvI-NPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSf 271 (475)
T KOG0258|consen 200 VAELERSVDEAR-KGI------NPRALVVI-NPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSF 271 (475)
T ss_pred HHHHHHHHHHHh-ccC------CceEEEEE-CCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhH
Confidence 688888888764 111 12445555 45688998764 9999999999999999999998777654211 1
Q ss_pred --cceecC-CCC-CCccEEEeCccchh----cccccee---ecCHHHHHHHH
Q psy2206 347 --VTEYFG-IDP-REVDILMGTYTKSF----GSMGGYV---AGSKSTIDYIR 387 (430)
Q Consensus 347 --~~e~~g-~~~-~~~dIv~~TlSKa~----G~~GG~v---~gs~~li~~l~ 387 (430)
+..+.| .-+ .--.+..+|.||.+ |.-|||+ --++++.+.+.
T Consensus 272 KKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~ 323 (475)
T KOG0258|consen 272 KKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIK 323 (475)
T ss_pred HHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHH
Confidence 111112 111 11235678889987 4566885 22455544443
No 405
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=86.23 E-value=1.6 Score=45.95 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCccc-CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIV-RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~-~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.+||++++.+. -.++.||.+ |.-|... ++.+|+++.+++|..|+.|-|.--.++|..-.| .+
T Consensus 194 lddLk~k~~~~------------~AalMiTnP--sT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPG---d~ 256 (496)
T COG1003 194 LDDLRAKAEDN------------LAALMITNP--STLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPG---DM 256 (496)
T ss_pred HHHHHHHhccc------------eeEEEeccC--cccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccccc---cc
Confidence 68888887652 123444432 2335443 599999999999999999999765555543222 22
Q ss_pred CCCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
..||+=--|+|+|.. +| |=|+..+.++.+|-
T Consensus 257 -----G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP 294 (496)
T COG1003 257 -----GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLP 294 (496)
T ss_pred -----ccceEEeecccccccCCCCCCCCCCceehHhhccccCC
Confidence 347887899999953 33 45655666666554
No 406
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=83.85 E-value=1.1 Score=46.31 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=36.4
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhh
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS 126 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~y 126 (430)
.+....|.++.- -+++++|+|.| |+|||.+ ||++.+|+.++++++
T Consensus 20 ~~~~~~G~~l~d---------------~dG~~ylD~~~g~~~~~lGh~--~p~v~~a~~~~~~~~ 67 (397)
T TIGR03246 20 IPVRGEGSRVWD---------------QQGKEYIDFAGGIAVNALGHA--HPELVKALIEQADKL 67 (397)
T ss_pred eEEEeecCEEEe---------------CCCCEEEECCcCHhhccCCCC--CHHHHHHHHHHHHhc
Confidence 346777777652 23569999999 8999996 899999999999984
No 407
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=83.83 E-value=1 Score=45.78 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=37.6
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeecc---ccCCCCCChhhHHHHHHHHhhhC
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYN---YLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyN---YLGfa~~~~~~~~a~~~al~~yG 127 (430)
.++....|.++.- -+++++|+|+|++ |||.. ||++++|+.+++++++
T Consensus 13 ~~~~~~~G~~~~d---------------~~G~~~lD~~s~~~~~~lG~~--~p~v~~a~~~~~~~~~ 62 (377)
T PRK02936 13 IDIVKGKGTKVTD---------------NNGKTYLDFTSGIAVCNLGHC--HPTVTKAVQEQLDDIW 62 (377)
T ss_pred ceEEEeecCEEEe---------------CCCCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhcc
Confidence 4567788887741 1235899999999 99974 8999999999999864
No 408
>KOG1383|consensus
Probab=83.28 E-value=6.9 Score=41.53 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=55.1
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHh-cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccc-hhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNK-YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTK-SFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~-y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSK-a~G~~G 373 (430)
++++|+.+..+-+.|.+.|.++|.++.-+ |++.+=+|-+-+ |++-+.|-...+.|+.....+.=+..+-+| +|.+.|
T Consensus 218 Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~G-gFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G 296 (491)
T KOG1383|consen 218 NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLG-GFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAG 296 (491)
T ss_pred ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCc-cccccccccCccccccCCCCceeEeeccceeeeeecC
Confidence 78999999999999999999999999988 999999999865 333221211122344432233333344455 444555
Q ss_pred -ceee-cCHHH
Q psy2206 374 -GYVA-GSKST 382 (430)
Q Consensus 374 -G~v~-gs~~l 382 (430)
++++ .++++
T Consensus 297 ~~~vl~r~k~~ 307 (491)
T KOG1383|consen 297 SSWVLYRNKEL 307 (491)
T ss_pred cEEEEEccccc
Confidence 4443 34443
No 409
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=82.14 E-value=2 Score=44.38 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=38.3
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCC--CChhhHHHHHHHHhhhCCcc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGE--NTGLCTERSKESVKQSGCAL 130 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~--~~~~~~~a~~~al~~yG~gs 130 (430)
++.+..|.+|... +++++|+|+| +|++++. .||++.+|+.+++++++.++
T Consensus 22 ~~~~~~g~~~~~~---------------~g~~~lD~~s-~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~ 73 (401)
T TIGR01885 22 VFSKAEGVHVWDV---------------EGKRYLDFLS-AYSAVNQGHCHPKIVKALTEQAQKLTLSS 73 (401)
T ss_pred eEEeeecCEEEeC---------------CCCEEEEccc-CHhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 3457778877531 2358999999 6998873 48999999999999987543
No 410
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.68 E-value=11 Score=36.99 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=32.9
Q ss_pred eEEEEEc-CccCCCCc---ccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 297 KILIVVE-GIFSMDGS---IVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 297 ~~lIi~E-~v~sm~G~---i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
..++++| ++++-.-. ..+|..|..+.++++..+++|=+|+.|
T Consensus 151 ~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G 196 (250)
T PRK13397 151 SNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTG 196 (250)
T ss_pred CeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCc
Confidence 4588899 77443322 668999999999899999999999865
No 411
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=80.49 E-value=2 Score=44.65 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=37.6
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhh
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS 126 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~y 126 (430)
..+.+..|.++.- -+++++|+|.| ++|||.+ ||++.+|+.++++++
T Consensus 23 ~~~~~~~G~~~~d---------------~dG~~~lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~ 71 (406)
T PRK12381 23 FIPVRGEGSRLWD---------------QQGKEYIDFAGGIAVNALGHA--HPALREALNEQASKF 71 (406)
T ss_pred ceEEEeecCEEEe---------------CCCCEEEEcCcCHhhccCCCC--CHHHHHHHHHHHhhc
Confidence 3456788887752 23468999999 8999999 899999999999986
No 412
>KOG3846|consensus
Probab=80.46 E-value=20 Score=36.43 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=47.8
Q ss_pred CceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+..++|...||.--+|...++.+|-..-+..|+++=.|=||++|-.- -....|| +|..+=.-=|.+
T Consensus 213 DeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVp----L~LHdWg-----VDFACWCSYKYl 278 (465)
T KOG3846|consen 213 DEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVP----LQLHDWG-----VDFACWCSYKYL 278 (465)
T ss_pred CeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCc----eEEeecC-----CceEEEeeeccc
Confidence 46788999999888999999999996667779999999999876321 1123344 456554444655
No 413
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=79.59 E-value=1.8 Score=44.49 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=38.4
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhhCCc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCA 129 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~yG~g 129 (430)
++....|.++.- -+++++|+|+| ++|||.. ||.+.+++.++++++|..
T Consensus 28 ~~~~~~G~~~~d---------------~dg~~~lD~~s~~~~~~lG~~--~p~v~~ai~~~~~~~~~~ 78 (398)
T PRK03244 28 ALVRGEGAVVWD---------------VDGKEYLDLLGGIAVNALGHA--HPAVVEAVTRQLATLGHV 78 (398)
T ss_pred eEEEeeecEEEE---------------CCCCEEEECCcCHhhccCCCC--CHHHHHHHHHHHHhccCc
Confidence 356677877752 13468999999 8999985 799999999999999864
No 414
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=78.78 E-value=2.1 Score=43.89 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=27.4
Q ss_pred cceeEEeee-ccccCCCCCChhhHHHHHHHHhhh
Q psy2206 94 ESTCLNLAS-YNYLGFGENTGLCTERSKESVKQS 126 (430)
Q Consensus 94 ~~~~lnl~S-yNYLGfa~~~~~~~~a~~~al~~y 126 (430)
++++|+|+| |+|+++..++|.+.+++.+++++.
T Consensus 35 G~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 68 (413)
T cd00610 35 GNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL 68 (413)
T ss_pred CCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC
Confidence 358999999 677777756999999999999754
No 415
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=74.80 E-value=4.1 Score=41.88 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=39.0
Q ss_pred cCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCC--CCChhhHHHHHHHHhhhCCcccc
Q psy2206 62 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFG--ENTGLCTERSKESVKQSGCALCS 132 (430)
Q Consensus 62 ~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa--~~~~~~~~a~~~al~~yG~gs~~ 132 (430)
+..++....|.++.- -++++.|+|.| +|++.. .+||++.+++++.+++++.++..
T Consensus 23 ~~~~~~~~~G~~~~d---------------~~g~~~lD~~~-~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~ 79 (401)
T PRK00854 23 LDVVLTRGEGVWVWD---------------TDGNRYLDCLS-AYSAVNQGHCHPKILAAMVEQAGRLTLTSRA 79 (401)
T ss_pred CCceEEeeeeCEEEE---------------CCCCEEEEcCc-chhhccCCCCCHHHHHHHHHHHhhccccccc
Confidence 334566777888752 12358999755 577665 23899999999999999876543
No 416
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=73.71 E-value=3.4 Score=42.36 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=35.9
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhh
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS 126 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~y 126 (430)
.|....|.++.- -+++++|+|.| ++|||.+ ||.+.+|+.+++++.
T Consensus 16 ~~~~~~G~~~~d---------------~dG~~~lD~~~g~~~~~lGh~--~p~v~~a~~~~~~~~ 63 (389)
T PRK01278 16 AFERGEGVWLID---------------EDGERYLDFASGIAVNSLGHA--HPHLVEALKEQAEKL 63 (389)
T ss_pred eEEeeecCEEEE---------------CCCCEEEECCccHhhccCCCC--CHHHHHHHHHHHHhc
Confidence 456777877742 23468999999 8999996 899999999999984
No 417
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.12 E-value=25 Score=36.34 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=32.0
Q ss_pred eEEEEEcC---cc--CCCCcccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 297 KILIVVEG---IF--SMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 297 ~~lIi~E~---v~--sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
..++++|. -| +-.-...+|..|..+.+.++..+|+|=+|++|
T Consensus 237 ~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G 283 (352)
T PRK13396 237 PNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTG 283 (352)
T ss_pred CeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCC
Confidence 34677765 22 11246678999999999989999999999876
No 418
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=69.79 E-value=21 Score=36.94 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=31.9
Q ss_pred eEEEEEc-CccC---CCCcccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 297 KILIVVE-GIFS---MDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 297 ~~lIi~E-~v~s---m~G~i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
..++++| ++.+ ..-...+|..|..+.+++++.+++|=.|+.|
T Consensus 254 ~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G 299 (360)
T PRK12595 254 GQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTG 299 (360)
T ss_pred CCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 3478898 6643 2123358999999999999999999999854
No 419
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=69.39 E-value=4.8 Score=41.82 Aligned_cols=48 Identities=15% Similarity=0.035 Sum_probs=37.1
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhhCCc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCA 129 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~yG~g 129 (430)
.+....|.++.- -+++++|+|.| |+|||.+ ||++.+|+++.++++..+
T Consensus 21 ~~~~~~G~~~~d---------------~dG~~~lD~~sg~~~~~lGh~--~p~v~~a~~~q~~~~~~~ 71 (395)
T PRK03715 21 VFTHGKGSWLYD---------------HNGKRYLDFIQGWAVNCLGHC--NPGMVEALAAQAEKLINP 71 (395)
T ss_pred eEEeeecCEEEE---------------CCCCEEEECCcChhhccCCCC--CHHHHHHHHHHHHhcccc
Confidence 345667776642 23469999997 9999999 699999999999886544
No 420
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=68.45 E-value=5.2 Score=41.95 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=39.0
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeec---cccCCCCCChhhHHHHHHHHhhhCCccccCC
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGCALCSPS 134 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~Sy---NYLGfa~~~~~~~~a~~~al~~yG~gs~~sr 134 (430)
.+....|.++.- -+++++|+|.|. +.||-+ ||.+.+|+++++++++.++.+++
T Consensus 28 ~~~~~~G~~l~d---------------~dG~~ylD~~~g~~~~~lGh~--~p~v~~a~~~q~~~~~~~~~~~~ 83 (433)
T PRK08117 28 PVVKGEGCYYYG---------------VDGKEYLDFTSGIAVANVGHR--HPKVVQAIKEQADKLMHGPSGVI 83 (433)
T ss_pred eEEeeeeeEEEe---------------CCCCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhccCcccccc
Confidence 346677777631 234589999875 678865 89999999999999887765433
No 421
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=68.02 E-value=5.1 Score=43.24 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=30.9
Q ss_pred CCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhhCCc
Q psy2206 92 GTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCA 129 (430)
Q Consensus 92 g~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~yG~g 129 (430)
-+++++|+|.| +++||- +||++.+|+.+.+++++..
T Consensus 86 ~dG~~ylD~~sg~~~~~lGh--~hp~v~~Av~~ql~~~~~~ 124 (504)
T PLN02760 86 INGKKYLDALAGLWCTALGG--SEPRLVAAATEQLNKLPFY 124 (504)
T ss_pred CCCCEEEEcCcCHHhcccCC--CCHHHHHHHHHHHhhccce
Confidence 34579999999 899994 4899999999999998754
No 422
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=67.84 E-value=5.8 Score=42.21 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=31.2
Q ss_pred CcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCc
Q psy2206 93 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCA 129 (430)
Q Consensus 93 ~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~g 129 (430)
+++++|+|+++.++.|.-+||.+++|+.+.+++++.+
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~ 106 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFS 106 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCc
Confidence 3468999999888666656999999999999998765
No 423
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=66.39 E-value=5.8 Score=40.99 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=37.9
Q ss_pred cCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeec---cccCCCCCChhhHHHHHHHHhhhC
Q psy2206 62 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 62 ~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~Sy---NYLGfa~~~~~~~~a~~~al~~yG 127 (430)
+...+....|.++.- -+++++|+|+|+ +|||.+ ||.+.+++.+++++++
T Consensus 22 ~~~~~~~~~G~~~~d---------------~dG~~~iD~~~~~~~~~lGh~--~p~v~~a~~~~~~~~~ 73 (403)
T PRK05093 22 AEFIPVRGEGSRVWD---------------QQGKEYIDFAGGIAVTALGHC--HPALVKALKEQGEKLW 73 (403)
T ss_pred CCeeEEEeecCEEEe---------------CCCCEEEEcCcCHHhccCCCC--CHHHHHHHHHHHHhcC
Confidence 334456777777652 234689999995 999995 8999999999999864
No 424
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=66.06 E-value=39 Score=33.29 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=31.1
Q ss_pred EEEEEcC-c--c-CCCCcccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 298 ILIVVEG-I--F-SMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 298 ~lIi~E~-v--~-sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
-+++++. + | ...-...+|..|..+.+++++.+++|=.|+.|
T Consensus 162 ~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G 206 (260)
T TIGR01361 162 NVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAG 206 (260)
T ss_pred cEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCC
Confidence 3667774 5 3 22334678999999999999999999999855
No 425
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=64.53 E-value=14 Score=42.92 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc-----
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----- 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----- 371 (430)
...|++-.+ +..|.+.++++|.+++++.|++++++=-.-. + ++....|- -.+||++|+ +|.||.
T Consensus 195 ~~~v~~q~P-n~~G~ied~~~i~~~~h~~gal~~~~ad~~a--l-----~ll~~Pge--~GaDi~vg~-~q~fg~p~g~G 263 (939)
T TIGR00461 195 VFGCLLQYP-ATDGSILDYKQLIDALHSHKSLVSVAADLMA--L-----TLLTPPGH--YGADIVLGS-SQRFGVPMGYG 263 (939)
T ss_pred EEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechHH--h-----CCcCCHHH--cCCcEEeeC-CCccCCCCCCC
Confidence 345555444 3469999999999999999999998422111 1 11111110 135888654 466653
Q ss_pred -c-cceeecCHHHHHHH
Q psy2206 372 -M-GGYVAGSKSTIDYI 386 (430)
Q Consensus 372 -~-GG~v~gs~~li~~l 386 (430)
+ +|+++.+++++..+
T Consensus 264 GP~aG~~a~~~~l~r~l 280 (939)
T TIGR00461 264 GPHAAFFAVKDEYNRKM 280 (939)
T ss_pred CCceeeeeecHhhHhhC
Confidence 2 27888887766554
No 426
>PRK08297 L-lysine aminotransferase; Provisional
Probab=62.51 E-value=9.6 Score=40.30 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=33.8
Q ss_pred ccccCCCCEEEEe-cCCCCCCCccccccCCccceeeecCC-CccCCCCCcHHHHH--HHHHHHHHh
Q psy2206 202 PVTSVPGAIITIK-DRETPDYGWTFKYTGTESTCLNLASY-NYLGFGENTGLCTE--RSKESVKQS 263 (430)
Q Consensus 202 ~i~~~~g~~i~~~-~~~~~d~~~~~~~~G~~~~~lnf~S~-nYLGl~~~~~~v~~--a~~~ai~~y 263 (430)
++.++.|.++++. | | +++|||.|. --..+++++|.+.+ ++.+.+.+.
T Consensus 29 ~i~~a~G~~l~D~~d-------------G--~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l 79 (443)
T PRK08297 29 DLERSQGSYLVDART-------------G--RRYLDMFTFFASSALGMNHPALADDPEFRAELGRA 79 (443)
T ss_pred EEEeccCCEEEECCC-------------C--CEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHh
Confidence 3689999999984 5 6 889999553 23334444468888 888888763
No 427
>PRK12566 glycine dehydrogenase; Provisional
Probab=61.17 E-value=21 Score=41.47 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=46.9
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE-eccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV-DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv-DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
...|++-.+ +..|.+.++.+|.+++++.|+++++ =|-.+.+++-+- ..+ .+||++|+ ++.||.
T Consensus 209 ~~~v~vq~P-~~~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll~~P-----ge~-----GADI~vG~-~Q~fGvp~~~ 276 (954)
T PRK12566 209 VFGALLQYP-DTHGEIRDLRPLIDQLHGQQALACVAADLLSLLVLTPP-----GEL-----GADVVLGS-TQRFGVPMGY 276 (954)
T ss_pred EEEEEEECC-CCceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCCCCh-----hhc-----CCcEEeeC-CCcCCCCCCC
Confidence 556666554 2469999999999999999998663 122333333211 122 35888774 355543
Q ss_pred --cc-ceeecCHHHHHH
Q psy2206 372 --MG-GYVAGSKSTIDY 385 (430)
Q Consensus 372 --~G-G~v~gs~~li~~ 385 (430)
+. ||++.+++++..
T Consensus 277 GGP~ag~~a~~~~~~R~ 293 (954)
T PRK12566 277 GGPHAAYFACRDDYKRA 293 (954)
T ss_pred CCCCeeeeeehHHHHhh
Confidence 22 788777655433
No 428
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=59.63 E-value=15 Score=38.60 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=32.7
Q ss_pred cccCCCCEEEEe-cCCCCCCCccccccCCccceeeecC-CCccCCCCCcHHHH--HHHHHHHHHh
Q psy2206 203 VTSVPGAIITIK-DRETPDYGWTFKYTGTESTCLNLAS-YNYLGFGENTGLCT--ERSKESVKQS 263 (430)
Q Consensus 203 i~~~~g~~i~~~-~~~~~d~~~~~~~~G~~~~~lnf~S-~nYLGl~~~~~~v~--~a~~~ai~~y 263 (430)
+.++.|.+|++. | | +++|||.| .-...+++++|.++ +|+.+.+.+.
T Consensus 23 ~~~a~G~~l~D~~d-------------G--~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~ 72 (431)
T TIGR03251 23 LDRSRGSVLVDARD-------------G--RRYLDMFSFFASMALGMNHPALVDDLAFRARLGAA 72 (431)
T ss_pred EEeccCCEEEECCC-------------C--CChhhcccChhhcCCCCCChhhhHHHHHHHHHHHh
Confidence 588999999984 5 6 88999954 33344444446788 8888888763
No 429
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=58.71 E-value=12 Score=39.22 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=29.0
Q ss_pred CCcceeEEeeec---cccCCCCCChhhHHHHHHHHhhhCC
Q psy2206 92 GTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 128 (430)
Q Consensus 92 g~~~~~lnl~Sy---NYLGfa~~~~~~~~a~~~al~~yG~ 128 (430)
-+++++|+|.|+ ++||.+ ||.+.+++.+.+++ +.
T Consensus 47 ~dG~~~lD~~~g~~~~~lGh~--~p~i~~a~~~~~~~-~~ 83 (426)
T PRK00062 47 VDGNEYIDYVGSWGPMILGHA--HPEVVEAVIEAAEK-GL 83 (426)
T ss_pred CCCCEEEEcccchhhhhcCCC--CHHHHHHHHHHHHh-CC
Confidence 345799999986 789996 79999999999998 54
No 430
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=56.76 E-value=44 Score=35.37 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=46.9
Q ss_pred ceEEEEEcCccCCCC-cccCHHHHHHHHHhcCcEEEE-eccccccccCCCCCccceecCCCCCCccEEEeCccchhccc-
Q psy2206 296 RKILIVVEGIFSMDG-SIVRLPEIVRLKNKYKAYLYV-DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G-~i~~L~~I~~La~~y~~~Liv-DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~- 372 (430)
....|+++-+. ..| .+.++.+|.+.+++++++++| =|--+.+++-+-| .+ ..||++|+-.- ||.+
T Consensus 210 ~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPG-----e~-----GADIvvG~~Qr-fGvPm 277 (450)
T COG0403 210 DVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPG-----EF-----GADIVVGSAQR-FGVPM 277 (450)
T ss_pred CeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCcc-----cc-----CCceEEecCcc-cCCCc
Confidence 45678888775 357 677799999999999998764 2334455443322 22 34788887543 3321
Q ss_pred ------cceeecCHHH
Q psy2206 373 ------GGYVAGSKST 382 (430)
Q Consensus 373 ------GG~v~gs~~l 382 (430)
.||.+..++.
T Consensus 278 gfGGPhag~fA~~~~~ 293 (450)
T COG0403 278 GFGGPHAGYFAVKDEF 293 (450)
T ss_pred CCCCcceeeeeEhHhH
Confidence 1666655544
No 431
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=55.99 E-value=15 Score=37.57 Aligned_cols=51 Identities=6% Similarity=-0.063 Sum_probs=38.6
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCC--CCChhhHHHHHHHHhhhCCcc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFG--ENTGLCTERSKESVKQSGCAL 130 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa--~~~~~~~~a~~~al~~yG~gs 130 (430)
.++....|.++.- -+++++|+|+| +|+++. .+||.+.++..+.+++++.++
T Consensus 15 ~~~~~~~G~~~~d---------------~dg~~~lD~~~-~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~ 67 (400)
T PTZ00125 15 VVLKRGKGVFVWD---------------VEGKKYYDFLS-AYSAVNQGHCHPKILAALINQAQKLTLTS 67 (400)
T ss_pred ccEEeeecCEEEe---------------CCCCEEEEccc-CHhhccCCcCCHHHHHHHHHHHHhccccc
Confidence 4566777887753 13468999998 688764 358999999999999988654
No 432
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=54.89 E-value=14 Score=37.70 Aligned_cols=48 Identities=8% Similarity=0.005 Sum_probs=37.6
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeec-cccCCCCCChhhHHHHHHHHhhhCC
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY-NYLGFGENTGLCTERSKESVKQSGC 128 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~Sy-NYLGfa~~~~~~~~a~~~al~~yG~ 128 (430)
+|....|.++.- -+++++|+|.|+ .|++|.. +|.+++|..+++++++.
T Consensus 14 ~~~~~~G~~l~d---------------~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~ 62 (375)
T PRK04260 14 EFVKAEGNYLID---------------TDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWH 62 (375)
T ss_pred eEEEeeeCEEEe---------------CCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCc
Confidence 456677776642 234689999997 6999996 99999999999998764
No 433
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=54.88 E-value=14 Score=39.51 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=33.6
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCC-CccCCCCCcHHHHHHHHHH
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY-NYLGFGENTGLCTERSKES 259 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~-nYLGl~~~~~~v~~a~~~a 259 (430)
++..+.++.|+++++.| | +++|||.|. --+.+++++|.+++|++++
T Consensus 40 ~p~~~~~a~G~~l~D~d-------------G--~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q 86 (464)
T TIGR00699 40 FLADYEKSRGNYLVDVD-------------G--NRLLDLYSQISSIPIGYNNPALLKAAQSP 86 (464)
T ss_pred cceEEEecccCEEEeCC-------------C--CEEEEccCCHhhhcCCCCCHHHHHHHHHH
Confidence 34557899999999775 7 889999653 3344445557899999874
No 434
>PLN02624 ornithine-delta-aminotransferase
Probab=54.11 E-value=17 Score=38.75 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=37.4
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCC--CCChhhHHHHHHHHhhhCCcc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFG--ENTGLCTERSKESVKQSGCAL 130 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa--~~~~~~~~a~~~al~~yG~gs 130 (430)
..+....|.+|.- -++++.|+|.| +|+++. .+||++.+|+++.+++++.++
T Consensus 59 ~~~~~a~G~~l~d---------------~dG~~ylD~~s-g~~~~~~Gh~~p~v~~ai~~ql~~~~~~~ 111 (474)
T PLN02624 59 VVFSRAKGSRIWD---------------PEGKKYLDFLS-AYSAVNQGHCHPKIIKALTEQAEKLTLSS 111 (474)
T ss_pred ceEEeeeeCEEEE---------------CCCCEEEEccc-chhcccCCCCCHHHHHHHHHHHHhcCCcc
Confidence 3456778887752 23468999988 466553 238999999999999987655
No 435
>KOG0628|consensus
Probab=53.18 E-value=20 Score=38.17 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCccc--CHHHHHHHHHhcCcEEEEeccccccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIV--RLPEIVRLKNKYKAYLYVDEAHSIGA 339 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~--~L~~I~~La~~y~~~LivDEAh~~G~ 339 (430)
.+.|++++++.+..|- ..++|+-++ +.+|..+ +|.+|..+|+++|+||=||-||+-.+
T Consensus 219 ~~~L~~AIe~D~arGl--------IPf~v~at~-GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa 278 (511)
T KOG0628|consen 219 GDTLRKAIEEDIARGL--------IPFFVCATL-GTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSA 278 (511)
T ss_pred HHHHHHHHHHHHhCCC--------ccEEEEEee-cCccccccccHHHhcchhhhcCEEEEeehhhcccc
Confidence 6888888887654332 224444444 4455544 59999999999999999999997433
No 436
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=52.47 E-value=27 Score=37.34 Aligned_cols=91 Identities=18% Similarity=0.036 Sum_probs=60.2
Q ss_pred cceeee-cCCCccCCCCCcHHHHHHHHHHH-HHhCCCCCCCCC------HHHHHHHHHHH--hhcCCCCCCCCCceEEEE
Q psy2206 232 STCLNL-ASYNYLGFGENTGLCTERSKESV-KQSGCALCSPSA------PSSLEAGLQKA--LLEGQPHSGKPWRKILIV 301 (430)
Q Consensus 232 ~~~lnf-~S~nYLGl~~~~~~v~~a~~~ai-~~yG~g~~~sr~------~~~Le~~L~~~--~~~~~p~~~~~~~~~lIi 301 (430)
++.|++ +|-||. + +.+++++...+ .+||.|.+++|. .+.||.+..+- ..++. ....+ +
T Consensus 34 ~~~l~liasen~~----s-~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~------~~~~~-~ 101 (475)
T PLN03226 34 WKGLELIASENFT----S-RAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRL------DPEKW-G 101 (475)
T ss_pred HcCeeEecCCccC----C-HHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCC------Cccee-E
Confidence 456777 787775 2 46789888888 899999999998 47777644321 11111 11222 2
Q ss_pred EcCccCCCCcccCHHHHHHHHHhcCcEEEEeccc
Q psy2206 302 VEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335 (430)
Q Consensus 302 ~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh 335 (430)
++. ....|..+.+..+..|+++.+.++..|..+
T Consensus 102 ~nv-~~~SG~~AN~av~~aL~~pgD~Il~~d~~~ 134 (475)
T PLN03226 102 VNV-QPLSGSPANFAVYTALLQPHDRIMGLDLPH 134 (475)
T ss_pred Eec-CcCchHHHHHHHHHHhCCCCCEEEECCCCc
Confidence 222 234699999999999999888777777543
No 437
>KOG3843|consensus
Probab=51.90 E-value=10 Score=37.73 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-cccceeec--CHHHHHHHHh
Q psy2206 315 LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAG--SKSTIDYIRA 388 (430)
Q Consensus 315 L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~g--s~~li~~l~~ 388 (430)
|++|..+|..|++.-+|..||+.-.- +.=+-++....+ .++|-++.||-|-|- ..||++++ ....|+.+.+
T Consensus 176 leaiaaica~~diphivnnayglqse-e~i~~iaa~~~~--grida~vqsldknf~vpvggaiia~fk~n~iq~iak 249 (432)
T KOG3843|consen 176 LEAIAAICAAHDIPHIVNNAYGLQSE-ECIHKIAAAAEC--GRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAK 249 (432)
T ss_pred HHHHHHHHHccCchhhhccccccchH-HHHHHHHHHhhh--ccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHH
Confidence 99999999999999999999864210 000111111222 367888999999995 35666543 4556666654
No 438
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=48.37 E-value=20 Score=37.65 Aligned_cols=35 Identities=6% Similarity=0.073 Sum_probs=29.8
Q ss_pred cceeEEeeecc---ccCCCCCChhhHHHHHHHHhhhCCcc
Q psy2206 94 ESTCLNLASYN---YLGFGENTGLCTERSKESVKQSGCAL 130 (430)
Q Consensus 94 ~~~~lnl~SyN---YLGfa~~~~~~~~a~~~al~~yG~gs 130 (430)
++++|+|.|+. +||-+ ||.+.+++.+.+++++...
T Consensus 44 G~~ylD~~~g~~~~~lGh~--~p~v~~ai~~~~~~~~~~~ 81 (427)
T TIGR00508 44 GRRLIDGMSSWWAAIHGYN--HPRLNAAAQKQIDKMSHVM 81 (427)
T ss_pred CCEEEEccchHHHhcCCCC--CHHHHHHHHHHHHhcCCcc
Confidence 46899999977 99955 8999999999999987543
No 439
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=46.09 E-value=12 Score=37.92 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 111 NTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 111 ~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
..+.+++++.+++.+||+|+++|+...|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRL 38 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCcccccccc
Confidence 567899999999999999999998855544
No 440
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=45.58 E-value=40 Score=35.09 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceE-EEEEcCccCCCCc---ccCHHHHHHHHHhcCcEEEEeccccc---cccCCCCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKI-LIVVEGIFSMDGS---IVRLPEIVRLKNKYKAYLYVDEAHSI---GALGPTGR 345 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~-lIi~E~v~sm~G~---i~~L~~I~~La~~y~~~LivDEAh~~---G~lG~~Gr 345 (430)
.+-|++++.+..+ ++.. ++.+=+..++.|. ++.++++.+||++|++.+++|-+.-. -++-..-.
T Consensus 171 ~~kLe~lidevG~---------~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~ 241 (471)
T COG3033 171 LEKLERLIDEVGA---------DNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREP 241 (471)
T ss_pred HHHHHHHHHHhCc---------ccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCc
Confidence 4788888887421 1222 3333345566675 45699999999999999999976411 00101111
Q ss_pred cc--------c-eecCCCCCCccEEEeCccc-hhccccceeecCHH----HHHHHHh
Q psy2206 346 GV--------T-EYFGIDPREVDILMGTYTK-SFGSMGGYVAGSKS----TIDYIRA 388 (430)
Q Consensus 346 G~--------~-e~~g~~~~~~dIv~~TlSK-a~G~~GG~v~gs~~----li~~l~~ 388 (430)
|. + |.+. -.|-.+.|.-| ++.-+||+++...+ +-..++.
T Consensus 242 gYrd~sI~~IarEm~s----YaD~~~mS~KKD~lvnmGGfl~~~D~~~fDvy~~~~~ 294 (471)
T COG3033 242 GYRDWSIEEIAREMYS----YADGCTMSAKKDGLVNMGGFLCFKDDSFFDVYEECRT 294 (471)
T ss_pred ccccccHHHHHHHHHh----hhhhheeeccccceeccccEEEecCccHHHHHHHHHh
Confidence 11 0 1111 12444456656 55678999988765 4444443
No 441
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=45.56 E-value=1.9e+02 Score=26.75 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEE
Q psy2206 251 LCTERSKESVKQSGCALCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY 330 (430)
Q Consensus 251 ~v~~a~~~ai~~yG~g~~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Li 330 (430)
.+..++.+....|..+ +++..-++|+..++... ....+.....+.++++|||-.. +++..++.+..+.+++.|+.++
T Consensus 67 ~l~~~i~~l~~~~~~~-g~T~~~~AL~~a~~~~~-~~~~~r~~~~kv~IllTDG~s~-~~~~~~~~~~a~~lk~~gV~i~ 143 (192)
T cd01473 67 ELLKKINDLKNSYRSG-GETYIVEALKYGLKNYT-KHGNRRKDAPKVTMLFTDGNDT-SASKKELQDISLLYKEENVKLL 143 (192)
T ss_pred HHHHHHHHHHhccCCC-CcCcHHHHHHHHHHHhc-cCCCCcccCCeEEEEEecCCCC-CcchhhHHHHHHHHHHCCCEEE
Confidence 3334333333335432 45566677877765531 1111111123667889999854 2334457777888888899877
Q ss_pred E
Q psy2206 331 V 331 (430)
Q Consensus 331 v 331 (430)
+
T Consensus 144 ~ 144 (192)
T cd01473 144 V 144 (192)
T ss_pred E
Confidence 4
No 442
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=42.03 E-value=33 Score=35.39 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=41.2
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
..+=++-++.++||.+- ..+.+.-+..+|.|=||--.-| ..+. .|.+-||++-|+||.=|-.|
T Consensus 138 ~~IElVTSPNNPDG~lr-----~~V~~g~~~k~I~D~AYYWPhy----TpI~-----~~aD~DiMLFT~SK~TGHAGSR~ 203 (363)
T PF04864_consen 138 PYIELVTSPNNPDGQLR-----EAVLNGSSGKVIHDLAYYWPHY----TPIT-----APADHDIMLFTLSKLTGHAGSRF 203 (363)
T ss_dssp GEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTT----S--------S-B--SEEEEEHHHHCS-GGG-E
T ss_pred CeEEEEeCCCCCccccc-----chhcCCCCcceeeeeeeecccc----cccC-----CCCCCceEEEEEecccCcccccc
Confidence 44557789999999852 1123455667899998732211 1111 13456999999999988777
Q ss_pred ceee-cCHHHHHHHHh
Q psy2206 374 GYVA-GSKSTIDYIRA 388 (430)
Q Consensus 374 G~v~-gs~~li~~l~~ 388 (430)
||.+ -++++.+.+..
T Consensus 204 GWAlVKD~~Va~kM~~ 219 (363)
T PF04864_consen 204 GWALVKDEEVAKKMTK 219 (363)
T ss_dssp EEEEES-HHHHHHHHH
T ss_pred ceeeecCHHHHHHHHH
Confidence 7754 45666655544
No 443
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=41.73 E-value=73 Score=33.03 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=58.2
Q ss_pred cEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCCc------------c
Q psy2206 327 AYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSHV------------R 393 (430)
Q Consensus 327 ~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~~------------~ 393 (430)
.++++|=+-.+ +++ .++-.+.|++..+--|-+|..| +.++.++++++.+.....+ .
T Consensus 171 ~~~v~D~SS~i--lsr---------~iDvsk~dviyagaQKnlGpaGltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s 239 (365)
T COG1932 171 GLLVADASSAI--LSR---------PIDVSKYDVIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLTHADNGS 239 (365)
T ss_pred ceEEEecccHH--hcC---------CCChhHcceEEEehhhccCccceEEEEEcHHHHhcccccCCchHhhchhhhccCC
Confidence 66777765332 321 2333467899999999999888 7788888888777553111 1
Q ss_pred cccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 394 SYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 394 ~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
+|.| +|.+.......+++.+++..|.+.+.+|-+
T Consensus 240 ~yNT-Pptfa~y~~~lv~~Wlk~~GGl~~~~~rn~ 273 (365)
T COG1932 240 MYNT-PPTFAWYLLGLVFKWLKSQGGLEALEARNQ 273 (365)
T ss_pred ccCC-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2222 233334444567899999998888877643
No 444
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=39.96 E-value=18 Score=36.26 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=21.8
Q ss_pred eeEEeeeccccCCCCCChhhHHHHHHHHh
Q psy2206 96 TCLNLASYNYLGFGENTGLCTERSKESVK 124 (430)
Q Consensus 96 ~~lnl~SyNYLGfa~~~~~~~~a~~~al~ 124 (430)
++|||++|+|++..+ ++.+.++.+++.+
T Consensus 2 ~~I~l~~~~~~~~~~-~~~~~~~~~~~~~ 29 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQ-NPPPPAAIKAAIR 29 (363)
T ss_dssp TEEESSSSSTSSTTS-SHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccc-ccchHHHHHHHHH
Confidence 599999999999984 6666666666555
No 445
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=39.66 E-value=1.8e+02 Score=30.56 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=52.5
Q ss_pred eeeecCCCccCCCCCcHHHHHHHHHHHHHhCC--CCCCC----CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccC
Q psy2206 234 CLNLASYNYLGFGENTGLCTERSKESVKQSGC--ALCSP----SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFS 307 (430)
Q Consensus 234 ~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~--g~~~s----r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~s 307 (430)
+|.+.|+|-.|....+.++.+.+++.++.-.+ -.+|+ ..++-|++.|+... .++.+| - ++
T Consensus 158 alr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~----------G~kpLL-~-SA-- 223 (389)
T TIGR00381 158 TIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAE----------GERCLL-A-SA-- 223 (389)
T ss_pred EEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhC----------CCCcEE-E-ec--
Confidence 56667888888888876677777776665432 22222 22788999988741 123232 2 12
Q ss_pred CCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 308 MDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 308 m~G~i~~L~~I~~La~~y~~~Liv 331 (430)
+-+. +++++.++|++||+.|++
T Consensus 224 -t~e~-Ny~~ia~lAk~yg~~Vvv 245 (389)
T TIGR00381 224 -NLDL-DYEKIANAAKKYGHVVLS 245 (389)
T ss_pred -Cchh-hHHHHHHHHHHhCCeEEE
Confidence 1111 789999999999998775
No 446
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=39.40 E-value=18 Score=36.96 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=30.7
Q ss_pred eeEEe-eeccccCCCCCChhhHHHHHHHH-hhhCCccccCCcccccc
Q psy2206 96 TCLNL-ASYNYLGFGENTGLCTERSKESV-KQSGCALCSPSGEIASM 140 (430)
Q Consensus 96 ~~lnl-~SyNYLGfa~~~~~~~~a~~~al-~~yG~gs~~sr~~~g~~ 140 (430)
+|||| +|+||+ +|.|+++..+.+ .+||.|..++|...|+.
T Consensus 20 ~~~~~~~~~~~~-----~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~ 61 (402)
T cd00378 20 ETLELIASENFT-----SPAVMEAMGSDLTNKYAEGYPGKRYYGGCE 61 (402)
T ss_pred hCeeeeccCCcC-----CHHHHHHhcccccccccCCCCCCcccCCch
Confidence 45555 789997 578999988775 79999988888766643
No 447
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=38.67 E-value=24 Score=33.98 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=27.9
Q ss_pred EEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 300 IVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 300 Ii~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
.-+|+-| |+..+|++|++.|+++|+.||+|=+..
T Consensus 42 ~~vd~~~---Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 42 YAVDPRF---GTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp EEESTTT---BHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred ecccccc---chhhhhhhhhhccccccceEEEeeecc
Confidence 3455555 777889999999999999999998864
No 448
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=38.41 E-value=1.5e+02 Score=30.35 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=31.5
Q ss_pred eEEEEEcC-c--c-CCCCcccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 297 KILIVVEG-I--F-SMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 297 ~~lIi~E~-v--~-sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
.-++++|- + | ...-...+|..|..+.+.++..+|+|=.|+.|
T Consensus 229 ~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G 274 (335)
T PRK08673 229 PNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATG 274 (335)
T ss_pred CeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCc
Confidence 34677773 4 4 22345668999999999989999999999865
No 449
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=37.96 E-value=21 Score=36.01 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.6
Q ss_pred CHHHHHHHH-HhcCcEEEEecccccccc
Q psy2206 314 RLPEIVRLK-NKYKAYLYVDEAHSIGAL 340 (430)
Q Consensus 314 ~L~~I~~La-~~y~~~LivDEAh~~G~l 340 (430)
-|..|+++| +.++..+|+||+|...-+
T Consensus 160 Rl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 160 RLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred hHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 499999999 557999999999986544
No 450
>PRK12403 putative aminotransferase; Provisional
Probab=36.12 E-value=31 Score=36.68 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=27.7
Q ss_pred CcceeEEeeec---cccCCCCCChhhHHHHHHHHhhhCCcc
Q psy2206 93 TESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGCAL 130 (430)
Q Consensus 93 ~~~~~lnl~Sy---NYLGfa~~~~~~~~a~~~al~~yG~gs 130 (430)
+++++|+|.|. .-||.+ ||++.+|+++++++++.++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~--hp~v~~A~~~q~~~~~~~~ 90 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYG--RKDLAAAAARQMEQLPYYN 90 (460)
T ss_pred CCCEEEECchhHHhhcCCCC--CHHHHHHHHHHHHhCCCee
Confidence 45689996432 229996 7999999999999987653
No 451
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=35.22 E-value=38 Score=37.65 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=49.6
Q ss_pred ccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCC-CCCccEEEeCccchhccccceeecCHHHH
Q psy2206 305 IFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGID-PREVDILMGTYTKSFGSMGGYVAGSKSTI 383 (430)
Q Consensus 305 v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~-~~~~dIv~~TlSKa~G~~GG~v~gs~~li 383 (430)
+.|--|+-.+|+++++-|++.|+-||+|=+++. +++.|.++...-|-. ....|.- .-.+..+|+. =+-.++.++.
T Consensus 206 p~sryGtPedfk~fVD~aH~~GIgViLD~V~~H--F~~d~~~L~~fdg~~~~e~~~~~-~~~~~~Wg~~-i~~~gr~EVR 281 (628)
T COG0296 206 PTSRYGTPEDFKALVDAAHQAGIGVILDWVPNH--FPPDGNYLARFDGTFLYEHEDPR-RGEHTDWGTA-IFNYGRNEVR 281 (628)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEEecCCc--CCCCcchhhhcCCccccccCCcc-cccCCCcccc-hhccCcHHHH
Confidence 445568888899999999999999999999864 777777664322210 0111221 2233344421 1234577777
Q ss_pred HHHHhc
Q psy2206 384 DYIRAN 389 (430)
Q Consensus 384 ~~l~~~ 389 (430)
++|..+
T Consensus 282 ~Fll~n 287 (628)
T COG0296 282 NFLLAN 287 (628)
T ss_pred HHHHHH
Confidence 776643
No 452
>KOG1411|consensus
Probab=33.16 E-value=57 Score=33.81 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCceEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCCCCcc--ceecCCCCCCccEEEeCccch
Q psy2206 294 PWRKILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV--TEYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 294 ~~~~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~--~e~~g~~~~~~dIv~~TlSKa 368 (430)
|+..++++-..-.+++|.-. .+++|.++-++.+.+-++|=||-...-|.--+-. ...|--. ..--++..||+|-
T Consensus 196 p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~-g~~~~laQSyAKN 274 (427)
T KOG1411|consen 196 PEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVED-GHEILLAQSYAKN 274 (427)
T ss_pred CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHc-CCceEeehhhhhh
Confidence 34566777777888888533 3889999999999999999998532223211110 1111111 1124678999999
Q ss_pred hcccc---c---eeecCHHHHHHH
Q psy2206 369 FGSMG---G---YVAGSKSTIDYI 386 (430)
Q Consensus 369 ~G~~G---G---~v~gs~~li~~l 386 (430)
+|..| | +++-+++....+
T Consensus 275 MGLYgERvGa~svvc~~ad~A~rV 298 (427)
T KOG1411|consen 275 MGLYGERVGALSVVCKDADEAKRV 298 (427)
T ss_pred cchhhhccceeEEEecCHHHHHHH
Confidence 99876 3 355566655443
No 453
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=32.02 E-value=57 Score=32.13 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=28.2
Q ss_pred eecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q psy2206 236 NLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGLQKA 283 (430)
Q Consensus 236 nf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~~~~Le~~L~~~ 283 (430)
+|+|+|++|.. +.+++++.+++..++ ..+.....+.|++.+.+.
T Consensus 1 ~~~~~~~~~~~---~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~~a~~ 44 (338)
T cd06502 1 DFRSDTVTGPT---PEMLEAMAAANVGDD-VYGEDPTTAKLEARAAEL 44 (338)
T ss_pred CcccccCCCCC---HHHHHHHHhcccCCc-ccCCCHHHHHHHHHHHHH
Confidence 59999999954 467888777654322 122233357778777663
No 454
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=31.67 E-value=48 Score=33.69 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=28.0
Q ss_pred cceeEEeee---ccccCCCCCChhhHHHHHHHHhhhC
Q psy2206 94 ESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 94 ~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~yG 127 (430)
++++|+|+| +|+||.+ +|.+.+++.+++++..
T Consensus 38 g~~~iD~~~g~~~~~lG~~--~p~v~~a~~~~~~~~~ 72 (396)
T PRK02627 38 GKEYLDFLAGIAVNNLGHC--HPKLVEAIQEQAAKLI 72 (396)
T ss_pred CCEEEECCccHHhccCCCC--CHHHHHHHHHHHhhcc
Confidence 458999999 8999996 7899999999998864
No 455
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=31.13 E-value=80 Score=32.11 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCC
Q psy2206 250 GLCTERSKESVKQSGCALCSPSA 272 (430)
Q Consensus 250 ~~v~~a~~~ai~~yG~g~~~sr~ 272 (430)
+.+++++++++++||.+++++|.
T Consensus 18 g~~~~~~~~a~~~~~~~~~~~~~ 40 (370)
T TIGR02539 18 GVLTEAARKALVEFGDGYSVCDF 40 (370)
T ss_pred CCCcHHHHHHHHHHhhccccccc
Confidence 45789999999999999887766
No 456
>smart00642 Aamy Alpha-amylase domain.
Probab=30.99 E-value=45 Score=30.39 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=24.0
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccc
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAH 335 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh 335 (430)
-|+..+++++++-|+++|+.||+|=+.
T Consensus 66 ~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 66 FGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 477788999999999999999999874
No 457
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=30.63 E-value=3.2e+02 Score=24.04 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhh--cCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSPSAPSSLEAGLQKALL--EGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~sr~~~~Le~~L~~~~~--~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
+.+.+.+.+-....+++++-+.|+...+.... .+.+. ...+.++|++||..+. ++.++.+-+++.|+.+++
T Consensus 63 ~~l~~~l~~~~~~~g~T~~~~aL~~a~~~~~~~~~~~r~--~~~k~iillTDG~~~~-----~~~~~a~~lk~~gi~i~~ 135 (164)
T cd01482 63 EDVLAAIKNLPYKGGNTRTGKALTHVREKNFTPDAGARP--GVPKVVILITDGKSQD-----DVELPARVLRNLGVNVFA 135 (164)
T ss_pred HHHHHHHHhCcCCCCCChHHHHHHHHHHHhcccccCCCC--CCCEEEEEEcCCCCCc-----hHHHHHHHHHHCCCEEEE
Confidence 34455555432223345555666654433210 01110 1125678899998652 456667777788876554
No 458
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.63 E-value=2.3e+02 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=22.7
Q ss_pred ccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 312 IVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 312 i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
..+|..|..+.+.++..+++|=.|+.|
T Consensus 182 ~vdl~~i~~lk~~~~~pV~~D~sHs~G 208 (266)
T PRK13398 182 TLDLAAVAVIKELSHLPIIVDPSHATG 208 (266)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCccc
Confidence 446888988888889999999989865
No 459
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=26.87 E-value=4.5e+02 Score=23.57 Aligned_cols=57 Identities=5% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCC-CCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEE
Q psy2206 270 PSAPSSLEAGLQKALLEGQPHSG-KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY 330 (430)
Q Consensus 270 sr~~~~Le~~L~~~~~~~~p~~~-~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Li 330 (430)
+..-.+|+.+.+..- ......+ ...+.++|++||..+.. .. + +++++.+++.|+.++
T Consensus 79 T~~~~AL~~a~~~l~-~~~~g~R~~~~kv~illTDG~~~~~-~~-~-~~~~~~~k~~gv~v~ 136 (177)
T cd01469 79 TNTATAIQYVVTELF-SESNGARKDATKVLVVITDGESHDD-PL-L-KDVIPQAEREGIIRY 136 (177)
T ss_pred ccHHHHHHHHHHHhc-CcccCCCCCCCeEEEEEeCCCCCCc-cc-c-HHHHHHHHHCCcEEE
Confidence 444566766655420 0000001 12356788899987643 22 2 667777888888665
No 460
>KOG2792|consensus
Probab=26.20 E-value=2e+02 Score=28.68 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCcEEE
Q psy2206 315 LPEIVRLKNKYKAYLY 330 (430)
Q Consensus 315 L~~I~~La~~y~~~Li 330 (430)
-++|.++|++|.++.-
T Consensus 212 ~eqvk~vak~yRVYfs 227 (280)
T KOG2792|consen 212 TEQVKQVAKKYRVYFS 227 (280)
T ss_pred HHHHHHHHHHhEEeec
Confidence 6789999999988743
No 461
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=26.01 E-value=1.2e+02 Score=32.40 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=38.7
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeec-cccCCCCCChhhHHHHHHHHhhhC
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY-NYLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~Sy-NYLGfa~~~~~~~~a~~~al~~yG 127 (430)
.+....|.++. +-++++.|.|.|. +-+.+.-+||.|++|+++.++++.
T Consensus 41 ~~~ra~G~~l~---------------DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~ 89 (447)
T COG0160 41 VIVRAEGAYLY---------------DVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN 89 (447)
T ss_pred eEEecccCEEE---------------eCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh
Confidence 35688888874 2244689999986 888888889999999999999884
No 462
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=25.56 E-value=67 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCc-EEEEeccccc
Q psy2206 315 LPEIVRLKNKYKA-YLYVDEAHSI 337 (430)
Q Consensus 315 L~~I~~La~~y~~-~LivDEAh~~ 337 (430)
...+.+..++++. +||+||+|..
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHHHHHhcCCeEEEEeChHhc
Confidence 5777777888877 8999999974
No 463
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=23.93 E-value=88 Score=28.21 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEEcCccCCCCc-cc-------CHHHHHHHHHhcCcEEEE
Q psy2206 297 KILIVVEGIFSMDGS-IV-------RLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~-i~-------~L~~I~~La~~y~~~Liv 331 (430)
..+||+|++.+..+. .- -+..+.++|+++|+.+++
T Consensus 142 ~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 142 PDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp -SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred CcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 448999998776553 11 267788889999987664
No 464
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.53 E-value=1.2e+02 Score=32.02 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=28.5
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
.++|+.|-- -|.+.+...++++|++.++.+++|=
T Consensus 145 ~~vVLSDY~---KG~L~~~q~~I~~ar~~~~pVLvDP 178 (467)
T COG2870 145 DALVLSDYA---KGVLTNVQKMIDLAREAGIPVLVDP 178 (467)
T ss_pred CEEEEeccc---cccchhHHHHHHHHHHcCCcEEECC
Confidence 557777644 5888899999999999999999984
No 465
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=22.39 E-value=5e+02 Score=22.76 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=21.4
Q ss_pred eEEEEEcCccCCCCcc--cCHHHHHHHHHhcC--cEEEEec
Q psy2206 297 KILIVVEGIFSMDGSI--VRLPEIVRLKNKYK--AYLYVDE 333 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i--~~L~~I~~La~~y~--~~LivDE 333 (430)
..+|++.+++...... .-.+.+.+++++++ -+.++|.
T Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~ 137 (169)
T cd01831 97 APIVLMLGPMLFGPYGTEEEIKRVAEAFKDQKSKKVHYFDT 137 (169)
T ss_pred CeEEEEecCccccccccHHHHHHHHHHHHhcCCceEEEEec
Confidence 3456666665543321 23567788888875 3556664
No 466
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=21.76 E-value=66 Score=36.27 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=32.8
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
...+|+-|+..|.+..|+++++-|++.|+-||+|=++.
T Consensus 231 y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 231 FFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred ccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 45678888777888899999999999999999998864
No 467
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=21.59 E-value=1.5e+02 Score=31.47 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=25.4
Q ss_pred EEEEEcCccCCCCcccCHHHHHHHHHhc-----CcEEEEeccccc
Q psy2206 298 ILIVVEGIFSMDGSIVRLPEIVRLKNKY-----KAYLYVDEAHSI 337 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~L~~I~~La~~y-----~~~LivDEAh~~ 337 (430)
.++-+..+.+ .+.+++++++-+++. ..+|+|||+|.+
T Consensus 75 ~f~~~sAv~~---gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 75 AFEALSAVTS---GVKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred ceEEeccccc---cHHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 3566666653 345677777777543 478999999984
No 468
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=21.38 E-value=48 Score=30.00 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=11.8
Q ss_pred hcCcEEEEecccccc
Q psy2206 324 KYKAYLYVDEAHSIG 338 (430)
Q Consensus 324 ~y~~~LivDEAh~~G 338 (430)
..+.+||+||||-+.
T Consensus 144 ~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 144 LKDNIVIFDEAHNLE 158 (174)
T ss_dssp CCCEEEEETTGGGCG
T ss_pred ccCcEEEEecccchH
Confidence 346899999999753
No 469
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=21.08 E-value=2.2e+02 Score=26.64 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcc--cC--------HHHHHHHHHhcCcEEEE
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSI--VR--------LPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i--~~--------L~~I~~La~~y~~~Liv 331 (430)
+++|+..++..... .+..+||+|++..+...- .+ +..|.++|+++|+.+++
T Consensus 108 ~~~l~~~i~~~~~~--------~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 108 VSDIRSRARRLKKE--------HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred HHHHHHHHHHHHHh--------cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 56666666553211 134589999987653221 11 67788899999988775
No 470
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.93 E-value=6.9e+02 Score=23.56 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=28.5
Q ss_pred CceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 295 WRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
.+.+++++||-.+. |.+.|+..-.++++++|+.++.
T Consensus 112 ~kvvILLTDG~n~~-~~i~P~~aAa~lA~~~gV~iyt 147 (191)
T cd01455 112 EAIVIVLSDANLER-YGIQPKKLADALAREPNVNAFV 147 (191)
T ss_pred CcEEEEEeCCCcCC-CCCChHHHHHHHHHhCCCEEEE
Confidence 46778899999764 6688888778999999987653
No 471
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=20.78 E-value=1.1e+02 Score=29.27 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=27.4
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEE
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY 330 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Li 330 (430)
.+.||+|=+ +.+|..+.++++.+++++||+.++
T Consensus 157 Pa~VicEi~-~~dG~mar~~~~~~fa~~h~l~~i 189 (203)
T COG0108 157 PAGVICEIM-NDDGTMARLPELEEFAKEHGLPVI 189 (203)
T ss_pred CcEEEEEEe-CCCccccChHHHHHHHHHcCCcEE
Confidence 456777755 449999999999999999998877
No 472
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=20.62 E-value=2.8e+02 Score=24.38 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHH-HHHHHHhc-CcE-EEEeccccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPE-IVRLKNKY-KAY-LYVDEAHSI 337 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~-I~~La~~y-~~~-LivDEAh~~ 337 (430)
.+.|.+++++. +...||+=-+.+|+|...+ ..+ ..+|++++ ++- .++||-+++
T Consensus 40 ~~~l~~li~~~------------~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~TT 99 (135)
T PF03652_consen 40 IEELKKLIEEY------------QIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLTT 99 (135)
T ss_dssp HHHHHHHHHHC------------CECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCSH
T ss_pred HHHHHHHHHHh------------CCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChhH
Confidence 56778887773 2335667677899999887 222 23344555 664 569998764
No 473
>PRK06149 hypothetical protein; Provisional
Probab=20.56 E-value=99 Score=36.24 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=28.8
Q ss_pred CcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCC
Q psy2206 93 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGC 128 (430)
Q Consensus 93 ~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~ 128 (430)
+++++|+|.| ||.++.-+||++.+|+++.+.+...
T Consensus 583 dG~~ylD~~~-~~~~lGh~hp~v~~Ai~~q~~~l~~ 617 (972)
T PRK06149 583 AGRSYLDMVN-NVTVLGHGHPRLAAAAARQWSLLNT 617 (972)
T ss_pred CCCEEEECCC-CccccCCCCHHHHHHHHHHHHhccc
Confidence 4579999985 5778887799999999999987643
No 474
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=20.54 E-value=6.9e+02 Score=24.74 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=52.0
Q ss_pred ceeeecCCCc--cCCCCCcHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhc-CCCCCCCCCceEEEEEcCc--cC
Q psy2206 233 TCLNLASYNY--LGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGLQKALLE-GQPHSGKPWRKILIVVEGI--FS 307 (430)
Q Consensus 233 ~~lnf~S~nY--LGl~~~~~~v~~a~~~ai~~yG~g~~~sr~~~~Le~~L~~~~~~-~~p~~~~~~~~~lIi~E~v--~s 307 (430)
-++.|+..-+ +-|+.+. .. ++..+++..++.+..++.....|+..++..... .++.....|+.++||+||. ++
T Consensus 102 gVv~Fg~~~~~v~Plt~d~-~~-~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~ 179 (266)
T cd01460 102 GVCSFGEDVQILHPFDEQF-SS-QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS 179 (266)
T ss_pred EEEEeCCCceEeCCCCCCc-hh-hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC
Confidence 4667766655 4444443 22 566667766666666666656666555432100 0011111247889999998 54
Q ss_pred CCCcccCHHHHHHHHHhcCcE---EEEecc
Q psy2206 308 MDGSIVRLPEIVRLKNKYKAY---LYVDEA 334 (430)
Q Consensus 308 m~G~i~~L~~I~~La~~y~~~---LivDEA 334 (430)
. |. .+.+++.+++.++. +++|..
T Consensus 180 e-~~---~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 180 E-GA---QKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred c-cH---HHHHHHHHHHcCCeEEEEEEcCC
Confidence 3 22 23335556666654 557775
No 475
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.46 E-value=1.4e+02 Score=29.30 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=52.2
Q ss_pred cCCCccC--CCCCcHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC
Q psy2206 238 ASYNYLG--FGENTGLCTERSKESVKQSGCALCSPSA-PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR 314 (430)
Q Consensus 238 ~S~nYLG--l~~~~~~v~~a~~~ai~~yG~g~~~sr~-~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~ 314 (430)
+=|||+| |..+ ....+.+.+.+.++|.-+--|+. ...+...+.+. .|-| .-.+=|++|.-.+..-...-
T Consensus 124 GlnNhmGs~~tsn-~~aM~~~m~~Lk~r~l~flDs~T~a~S~a~~iAk~--~gVp-----~~~rdvfLD~e~~~~~V~kq 195 (250)
T COG2861 124 GLNNHMGSRFTSN-EDAMEKLMEALKERGLYFLDSGTIANSLAGKIAKE--IGVP-----VIKRDVFLDDEDTEAAVLKQ 195 (250)
T ss_pred eehhhhhhhhcCc-HHHHHHHHHHHHHCCeEEEcccccccchhhhhHhh--cCCc-----eeeeeeeecCcCCHHHHHHH
Confidence 4478877 4444 35678888888888875443333 23344444331 1122 23445778887764333445
Q ss_pred HHHHHHHHHhcCcEEEE
Q psy2206 315 LPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 315 L~~I~~La~~y~~~Liv 331 (430)
|++++.+|+++|-.+-+
T Consensus 196 l~~~~~~Ark~G~ai~I 212 (250)
T COG2861 196 LDAAEKLARKNGSAIGI 212 (250)
T ss_pred HHHHHHHHHhcCceEEe
Confidence 99999999999865543
No 476
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=20.39 E-value=83 Score=33.58 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=24.4
Q ss_pred CCCCcccCHHHHHHHHHhcCcEEEEeccc
Q psy2206 307 SMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335 (430)
Q Consensus 307 sm~G~i~~L~~I~~La~~y~~~LivDEAh 335 (430)
+.-|+..+|++|++-|+++|+.||+|=+.
T Consensus 75 ~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 75 TKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred cCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 34488888999999999999999999764
No 477
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=20.11 E-value=8.9e+02 Score=25.61 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=25.3
Q ss_pred ceEEEEEcCccCCCCc-ccC-HHHHHHHHHhcCcEEEEeccc
Q psy2206 296 RKILIVVEGIFSMDGS-IVR-LPEIVRLKNKYKAYLYVDEAH 335 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~-i~~-L~~I~~La~~y~~~LivDEAh 335 (430)
+.++|++++. +..|. -.. -++|+++|+++|+.|+=-.+.
T Consensus 90 ~~~vi~s~gf-~e~g~~g~~~~~~l~~~a~~~girvlGPnc~ 130 (447)
T TIGR02717 90 KGAVVITAGF-KEVGEEGAELEQELVEIARKYGMRLLGPNCL 130 (447)
T ss_pred CEEEEECCCc-cccCcchHHHHHHHHHHHHHcCCEEEecCee
Confidence 3555666654 33342 122 379999999999998866653
Done!