RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2206
(430 letters)
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 227 bits (581), Expect = 1e-69
Identities = 81/151 (53%), Positives = 115/151 (76%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
PS LE L++ + EGQP + +PW+KI+++VEGI+SM+G + +LPEIV + KYKAY+Y+D
Sbjct: 217 PSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLD 276
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
EAHSIGA+G TGRGV E G+DP +VDI+MGT+TKSFGS GGY+AGSK I Y++
Sbjct: 277 EAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPA 336
Query: 393 RSYATSMPPPVAMQILTSMRIIMGLENGDEG 423
YATSM PP Q+++++++I+G + + G
Sbjct: 337 HLYATSMSPPAVQQVISAIKVILGEDGTNRG 367
Score = 96.0 bits (239), Expect = 2e-21
Identities = 41/98 (41%), Positives = 50/98 (51%)
Query: 175 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 234
GY + FY R +Y RI DCFNRP+ S P A + +R + D T K T C
Sbjct: 43 GYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRC 102
Query: 235 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA 272
LNL SYNYLGF CT R ES+K+ + CS
Sbjct: 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRV 140
Score = 96.0 bits (239), Expect = 2e-21
Identities = 41/96 (42%), Positives = 50/96 (52%)
Query: 38 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 97
GY + FY R +Y RI DCFNRP+ S P A + +R + D T K T C
Sbjct: 43 GYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRC 102
Query: 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 133
LNL SYNYLGF CT R ES+K+ + CS
Sbjct: 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSS 138
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 195 bits (497), Expect = 1e-58
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 9/144 (6%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
LE L++A +P+ K LIV EG++SMDG I LPE+V L KY A L+VD
Sbjct: 117 MEDLEKLLREAR--------RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVD 168
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
EAHS+G GP GRGV E FG +VDI+MGT K+FG++GGY+AGSK IDY+R+ +
Sbjct: 169 EAHSVGVYGPHGRGV-EEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARG 227
Query: 393 RSYATSMPPPVAMQILTSMRIIMG 416
++TS+PP VA L ++ ++ G
Sbjct: 228 FIFSTSLPPAVAAAALAALEVLQG 251
Score = 36.0 bits (84), Expect = 0.027
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAG 279
LN S +YLG + E +KE++ + G S L +G
Sbjct: 1 KKVLNFCSNDYLGLANH-PEVIEAAKEALDKYGVGAGG----SRLISG 43
Score = 35.2 bits (82), Expect = 0.047
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 95 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCS 132
LN S +YLG + E +KE++ + G
Sbjct: 1 KKVLNFCSNDYLGLANH-PEVIEAAKEALDKYGVGAGG 37
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 183 bits (466), Expect = 1e-53
Identities = 67/134 (50%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 283 ALLE--GQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL 340
LE + R+ LIV EG+FSMDG I LPE+V L KY A LYVDEAH++G L
Sbjct: 156 DHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL 215
Query: 341 GPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMP 400
GP GRG+ E+FG++P EVDI++GT K+ GS GGY+AGS + IDY+R + ++T++P
Sbjct: 216 GPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALP 275
Query: 401 PPVAMQILTSMRII 414
P VA L ++RI+
Sbjct: 276 PAVAAAALAALRIL 289
Score = 31.8 bits (73), Expect = 0.64
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 93 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 133
LN S +YLG + E +K ++++ G
Sbjct: 37 DGRKVLNFCSNDYLGLA-SHPELIEAAKAAIRRYGVGAGGS 76
Score = 31.8 bits (73), Expect = 0.64
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 230 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 270
LN S +YLG + E +K ++++ G
Sbjct: 37 DGRKVLNFCSNDYLGLA-SHPELIEAAKAAIRRYGVGAGGS 76
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 153 bits (389), Expect = 2e-42
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 14/144 (9%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
+LEA L K + LIV E +FSMDG + L E+V L ++ A+L VD
Sbjct: 155 VDALEALLAKW----------RAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVD 204
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYI--RANS 390
EAH G LGP GRG+ G+ IL+GT K+ GS G V GS++ IDY+ RA
Sbjct: 205 EAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARP 264
Query: 391 HVRSYATSMPPPVAMQILTSMRII 414
+ + T++PP A ++RI+
Sbjct: 265 FI--FTTALPPAQAAAARAALRIL 286
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 148 bits (376), Expect = 7e-41
Identities = 62/144 (43%), Positives = 88/144 (61%), Gaps = 13/144 (9%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
LE L+K E + LIV +G+FSMDG I LP++V L +Y A+L VD
Sbjct: 132 VEHLERLLEKNRGERR---------KLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVD 182
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYI--RANS 390
+AH G LG GRG E+FG+ P VDI +GT +K+ GS G YVAGS++ IDY+ RA +
Sbjct: 183 DAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRART 242
Query: 391 HVRSYATSMPPPVAMQILTSMRII 414
+ ++T++PP VA L ++ +I
Sbjct: 243 LI--FSTALPPAVAAAALAALELI 264
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 142 bits (360), Expect = 3e-38
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 16/150 (10%)
Query: 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335
LEA L++A G R LI +G+FSMDG I LPEI L +KY A + VD++H
Sbjct: 161 LEAQLKEAKEAGA-------RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSH 213
Query: 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRS 394
++G +G GRG E+FG+ R VDI+ GT K+ G+ GGY AG K ID++R S R
Sbjct: 214 AVGFVGENGRGTVEHFGVMDR-VDIITGTLGKALGGASGGYTAGRKEVIDWLRQRS--RP 270
Query: 395 Y--ATSMPPPVAMQILTSMRIIMGLENGDE 422
Y + S+ P + + + + LE DE
Sbjct: 271 YLFSNSLAPAIVAASIKVLEL---LEESDE 297
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 129 bits (327), Expect = 8e-34
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
L+ L++ + K LIV +G+FSMDG + LPEIV L +Y A YVD
Sbjct: 149 MDDLDRVLREN---------PSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVD 199
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
+AH G +G GRG +FG++ + VDI +GT +K+ G +GGY AG K I+Y++ +
Sbjct: 200 DAHGSGVMGEAGRGTVHHFGLEDK-VDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARP 258
Query: 393 RSYATSMPPPVAMQILTSMRIIM 415
++T+ PP V + ++ +
Sbjct: 259 FLFSTAQPPAVVAALAAAVDELQ 281
Score = 31.7 bits (72), Expect = 0.78
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 71 GAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSG 127
G I+I+ E+ + G E +NL+S NYLGF ++ L E + ++++Q G
Sbjct: 12 GLYISIRVLESAQGPRV-RVNGKE--VINLSSNNYLGFADHPRL-KEAAAQAIQQYG 64
Score = 31.7 bits (72), Expect = 0.78
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 208 GAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSG 264
G I+I+ E+ + G E +NL+S NYLGF ++ L E + ++++Q G
Sbjct: 12 GLYISIRVLESAQGPRV-RVNGKE--VINLSSNNYLGFADHPRL-KEAAAQAIQQYG 64
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 119 bits (301), Expect = 6e-30
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
LI E ++SMDG I + EI L +KY A Y+DE H++G GP G G+ E G+ R +
Sbjct: 181 LIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDR-I 239
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYA------TSMPPPVAMQILTSMR 412
DI+ GT K+FG MGGY+AGS + +D + RSYA TS+PP +A L S+R
Sbjct: 240 DIIEGTLAKAFGVMGGYIAGSAALVDAV------RSYAPGFIFTTSLPPAIAAAALASIR 293
Query: 413 II 414
+
Sbjct: 294 HL 295
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 111 bits (278), Expect = 6e-27
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 285 LEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344
LE Q S P R LI E ++SMDG I + I L ++Y A YVDE H++G G G
Sbjct: 167 LEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARG 226
Query: 345 RGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVA 404
G+ E G+ R +D++ GT K+FG +GGY+A S ID++R+ + + T++PP VA
Sbjct: 227 GGIAERDGLMDR-IDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVA 285
Query: 405 MQILTSMR 412
++R
Sbjct: 286 AGATAAIR 293
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 109 bits (274), Expect = 3e-26
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 258 ESVKQSGCA--LCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL 315
E ++ SG + + + LE LQ P R +I E ++SMDG I +
Sbjct: 146 EGIRHSGAEKFIFRHNDVAHLEKLLQSV---------DPNRPKIIAFESVYSMDGDIAPI 196
Query: 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGY 375
EI L +KY A Y+DE H++G GP G G+ E G+ R +DI+ GT K+FG +GGY
Sbjct: 197 EEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHR-IDIIEGTLAKAFGVVGGY 255
Query: 376 VAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412
+A S+ ID IR+ + + TS+PP +A S+R
Sbjct: 256 IAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIR 292
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 109 bits (274), Expect = 5e-26
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SL L+K L K R IVVE I+ G I L EIVRLK KY+ + +DE+
Sbjct: 227 SLRNTLEK-LTAENKRKKKLRR--YIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDES 283
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
+S G LG +GRG++E+FG+ ++DI+ + + GG+ GS +D+ R +S
Sbjct: 284 NSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYV 343
Query: 395 YATSMPPPVAMQILTSMRII 414
++ S+PP +A +T++ ++
Sbjct: 344 FSASLPPYLASAAITAIDVL 363
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 107 bits (269), Expect = 1e-25
Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335
LEA L++A G R LI +G+FSMDG I L EI L +KY A + VDE H
Sbjct: 157 LEAQLKEARAAGA-------RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECH 209
Query: 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRS 394
+ G LGPTGRG E G+ R VDI+ GT K+ G+ GG+ K ++ +R S
Sbjct: 210 ATGFLGPTGRGSHELCGVMGR-VDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYL 268
Query: 395 YATSMPPPVAMQILTSMRIIMG 416
++ S+PP V + + ++
Sbjct: 269 FSNSLPPAVVGASIKVLEMLEA 290
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 106 bits (266), Expect = 3e-25
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 278 AGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSI 337
A L++ L + PH K L+ E ++SMDG I + EI + K+ A Y+DE H++
Sbjct: 164 ADLERKLSDLDPHRPK-----LVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAV 218
Query: 338 GALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYAT 397
G GP G G+ E G+ R + I+ GT K+FG MGGY+ GS + D+IR+ + + T
Sbjct: 219 GLYGPRGGGIAEREGLADR-LTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTT 277
Query: 398 SMPPPVAMQILTSMR 412
S+PP VA L S+R
Sbjct: 278 SLPPAVAAGALASVR 292
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 92.7 bits (230), Expect = 1e-20
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 293 KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352
++ +VVEG++ G++ L E+V LK ++ L +DE+ S G LG +GRG E+ G
Sbjct: 135 PTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAG 194
Query: 353 IDP-REVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP---PVAMQIL 408
+ P +I+ + +FGS+GG GS+ +D+ R + ++ S PP
Sbjct: 195 LKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATAT 254
Query: 409 TSM 411
Sbjct: 255 AGE 257
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 78.9 bits (195), Expect = 4e-16
Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 290 HSGKPWRKILIVVEGIFSMDGSIVRLPE---IVRLKNKYKAYLYVDEAHSIGALGPTGRG 346
+++ + G++ L E ++ L ++ L VDEA++ G
Sbjct: 136 LKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGS-LDA 194
Query: 347 VTEYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMP-PP 402
V + +++G+++K+FG G GY+ G+ + I +R + R + +S
Sbjct: 195 VATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLA--RPFYSSTHLQA 252
Query: 403 VAMQIL 408
A L
Sbjct: 253 AAAAAL 258
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 74.3 bits (182), Expect = 3e-14
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP 355
++ ++V + +FSMDG + E+ +L+ KY L +D+AH G G GV E F +
Sbjct: 249 KRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEA 308
Query: 356 REVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411
+VD+ +GT +K+ G GG++A SK I++ ++T++P P+A ++
Sbjct: 309 -DVDLCVGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAV 363
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 73.1 bits (180), Expect = 4e-14
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGID 354
+ + V +G++SM G I + E++RL+ KY +LY+D+AH + G G G V
Sbjct: 180 KTVAYVADGVYSM-GGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYR 238
Query: 355 PREVDILMGTYTKSFGSMGGYVA-GSKSTIDYIRANSHVRSYATSMPPPVAM--QILTSM 411
E I+ + K+FG+ GG + G I+ I + A S VA IL S
Sbjct: 239 LNERTIIAASLGKAFGASGGVIMLGDAEQIELIL--RYAGPLAFSQSLNVAALGAILASA 296
Query: 412 RI 413
I
Sbjct: 297 EI 298
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 72.1 bits (177), Expect = 8e-14
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 244 GFGENTGLCTERSKES--VKQSGCALCSPSAPSSLEAGLQKAL-------LEG--QPHSG 292
G+ N GLC S + V S S+ +G ++ LE +
Sbjct: 80 GYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQ 139
Query: 293 KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352
+ + +I I V ++S G++ L +I+ L KY A+L VDEAH++G G G+G G
Sbjct: 140 RSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG 199
Query: 353 IDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP 401
+ ++ TY+K+ GSMG + S + NS Y+T +PP
Sbjct: 200 YE--NFYAVLVTYSKALGSMGAALLSSSEVKQDLMLNSPPLRYSTGLPP 246
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 67.0 bits (164), Expect = 4e-12
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 300 IVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVD 359
IVV+ ++S G+I L +IV + ++ L VDE+HS+G GP G G+ G+ R V
Sbjct: 185 IVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSR-VH 243
Query: 360 ILMGTYTKSFGSMGGYVAGSKSTIDYIRANS 390
+ + K+F G + + +Y+ S
Sbjct: 244 FITASLAKAFAGRAGIITCPRELAEYVPFVS 274
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 45.5 bits (108), Expect = 8e-06
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
LIV+ + G +V L EI ++ +Y L VD A + GA +
Sbjct: 95 LIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGA-----SPAPGVLIPEGGA- 148
Query: 359 DILMGTYTKSF-GSMGGYVAG 378
D++ + K+ G GG V
Sbjct: 149 DVVTFSLHKNLGGEGGGVVIV 169
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 46.2 bits (110), Expect = 2e-05
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 314 RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373
L E+ L K+ + DEA++ L G +D E I++ +++K+FG G
Sbjct: 153 ELEELAELAKKHGILIISDEAYA--ELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPG 210
Query: 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDE 422
GY+ + + + Y TS P ++ + L++G+E
Sbjct: 211 LRIGYLIAPPE--ELLERLKKLLPYTTSGPSTLSQAAAAAA-----LDDGEE 255
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 36.1 bits (84), Expect = 0.032
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 21/70 (30%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA------------------- 339
L+ + + ++ G++ + EI L +++ A + VD A + G
Sbjct: 165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHK 224
Query: 340 --LGPTGRGV 347
LGPTG GV
Sbjct: 225 WLLGPTGIGV 234
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 34.1 bits (79), Expect = 0.13
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 315 LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGG 374
L EI + ++ A L VD S+G E +D +D+ + K+ G+ G
Sbjct: 150 LKEIAKAAKEHGALLIVDAVSSLGG---------EPLKVDEWGIDVAITGSQKALGAPPG 200
Query: 375 --YVAGSKSTIDYIRANSHVRSY 395
+VA S+ ++ I H Y
Sbjct: 201 LAFVAVSERALEAIEERKHPSFY 223
>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of
CD2-associated protein and similar proteins. This
subfamily is composed of the third SH3 domain (SH3C) of
CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and
similar domains. CD2AP and CIN85 are adaptor proteins
that bind to protein partners and assemble complexes
that have been implicated in T cell activation, kidney
function, and apoptosis of neuronal cells. They also
associate with endocytic proteins, actin cytoskeleton
components, and other adaptor proteins involved in
receptor tyrosine kinase (RTK) signaling. CD2AP and the
main isoform of CIN85 contain three SH3 domains, a
proline-rich region, and a C-terminal coiled-coil
domain. All of these domains enable CD2AP and CIN85 to
bind various protein partners and assemble complexes
that have been implicated in many different functions.
SH3C of both proteins have been shown to bind to
ubiquitin. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate
affinity and selectivity, preferentially to PxxP
motifs. They play versatile and diverse roles in the
cell including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 55
Score = 27.7 bits (62), Expect = 1.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 71 GAIITIKDRETPDYGW 86
G I+TI ++ D GW
Sbjct: 21 GDIVTILSKDCEDKGW 36
Score = 27.7 bits (62), Expect = 1.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 208 GAIITIKDRETPDYGW 223
G I+TI ++ D GW
Sbjct: 21 GDIVTILSKDCEDKGW 36
>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1107
Score = 30.9 bits (70), Expect = 1.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 313 VRLPEIVR-LKNKYKAYLYVDEAHSIGALGPTG--RGVTEYFGIDPREVDIL 361
R E++R +K+KY L V + + G L R + G+ PR++DI
Sbjct: 391 TRRDEMIRYVKDKYGQ-LRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIF 441
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 30.0 bits (68), Expect = 2.0
Identities = 29/153 (18%), Positives = 43/153 (28%), Gaps = 48/153 (31%)
Query: 290 HSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY--VDEAHSIGALGPTGRGV 347
S +P ++ G S + AYL+ ++ SI G T G
Sbjct: 112 FSDEPITPEDLIEYGTISPEQ---------------AAYLWLAIEARKSIIICGGTASGK 156
Query: 348 TEY-----FGIDP----------REVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
T I P E+ + + + G + S D +RA
Sbjct: 157 TTLLNALLDFIPPEERIVTIEDTPELKLPHENWVQLVTREGESGSSEVSLEDLLRA---- 212
Query: 393 RSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425
A P II+G G E V
Sbjct: 213 ---ALRQRP---------DYIIVGELRGREAFV 233
>gnl|CDD|216366 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D).
Length = 338
Score = 29.9 bits (68), Expect = 2.7
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 166 SNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVT 204
GLLS P+ + +FVL Y + + + PV
Sbjct: 203 WAGLLS-----PEDFREFVLPYLKRIVDEVKARGPGPVI 236
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA. [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 730
Score = 29.6 bits (67), Expect = 4.3
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 305 IFSMD-GSIV-----------RLPEIVR-LKNKYKAYLYVDEAHSIGALGPTGRGVTE 349
I+S+D G+++ RL +V ++ + A L++DE H+I G T G +
Sbjct: 240 IYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD 297
>gnl|CDD|132592 TIGR03553, F420_FbiB_CTERM, F420 biosynthesis protein FbiB,
C-terminal domain. Coenzyme F420 differs between the
Archaea and the Actinobacteria, where the numbers of
glutamate residues attached are 2 (Archaea) or 5-6
(Mycobacterium). The enzyme in the Archaea is homologous
to the N-terminal domain of FbiB from Mycobacterium
bovis, and is responsible for glutamate ligation.
Therefore it seems likely that the C-terminal domain of
FbiB, modeled by This model, is involved in additional
glutamate ligation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 194
Score = 28.6 bits (64), Expect = 4.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 270 PSAPSSLEAGLQKALLEGQPHSGKPWRKILI 300
P P ++ A + AL PH +P R + +
Sbjct: 16 PVDPDAVRAAVAAALTAPAPHHTRPVRFVWV 46
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 28.8 bits (65), Expect = 5.2
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
S E + +AL + K + + S G + L I L K+ A L VD
Sbjct: 112 SPEE-IAEALEQHDI-------KAVTLTHNETST-GVLNPLEGIGALAKKHDALLIVDAV 162
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGG--YVAGSKSTIDYIRA-NSH 391
S+G E F +D VD+ K+ G+ G +A S+ ++ I+
Sbjct: 163 SSLGG---------EPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKP 213
Query: 392 VRSY 395
Y
Sbjct: 214 KGFY 217
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 28.8 bits (65), Expect = 5.6
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 20/58 (34%)
Query: 310 GSIVRLPEIVRLKNKYKAYLYVDEAHSIG--------------------ALGPTGRGV 347
G++ + EI +L ++ A + VD A ++ GPTG GV
Sbjct: 173 GTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGV 230
>gnl|CDD|239492 cd03398, PAP2_haloperoxidase, PAP2, haloperoxidase_like subfamily.
Haloperoxidases catalyze the oxidation of halides such
as bromide or chloride by hydrogen peroxide, which
results in subsequent halogenation of organic
substrates, or halide-assisted disproportionation of
hydrogen peroxide forming dioxygen. They are likely to
participate in the biosynthesis of halogenated natural
products, such as volatile halogenated hydrocarbons,
chiral halogenated terpenes, acetogenins and indoles.
Length = 232
Score = 28.5 bits (64), Expect = 6.0
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 49 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWT 87
+ ++Y YRR RPVT++ A D W
Sbjct: 103 WDAKYHYRRW-----RPVTAIRLADTDGNPATEADPYWL 136
Score = 28.5 bits (64), Expect = 6.0
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 186 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWT 224
+ ++Y YRR RPVT++ A D W
Sbjct: 103 WDAKYHYRRW-----RPVTAIRLADTDGNPATEADPYWL 136
>gnl|CDD|218500 pfam05211, NLBH, Neuraminyllactose-binding hemagglutinin precursor
(NLBH). This family is comprised of several flagellar
sheath adhesin proteins also called
neuraminyllactose-binding hemagglutinin precursor (NLBH)
or N-acetylneuraminyllactose-binding fibrillar
hemagglutinin receptor-binding subunits. NLBH is found
exclusively in Helicobacter which are gut colonising
bacteria and bind to sialic acid rich macromolecules
present on the gastric epithelium.
Length = 258
Score = 28.4 bits (63), Expect = 6.5
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-------LGPTGRGVT 348
+K +V+ M+G +V L + R K K+ L E I + L P
Sbjct: 121 KKGYLVLA----MNGEVVILEDPKRTIQK-KSGLDKMEGVDISSGFVKVNFLEPMSGESL 175
Query: 349 EYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSH 391
F +D E+D + S GG++ K+ + I+ +
Sbjct: 176 HSFTMDVSELDAQEKFLKTTHSSSGGFL--VKTMVHRIKGTNS 216
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 29.0 bits (65), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 4 KPYGPKENRLRKRPICLPSAQHTGTQEVSRMVKFGYPDLYEKFVLFYSRY 53
KP KE + R +C+ +++G E R+ + GYP + F F RY
Sbjct: 568 KPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHT-FREFVERY 616
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 28.0 bits (63), Expect = 9.3
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 37/156 (23%)
Query: 280 LQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA 339
+KAL+E P K ++ + G L +IV + + VDEAH GA
Sbjct: 145 FKKALIE------HPDAKAAVITNPTY--YGICYNLRKIVEEAHHRGLPVLVDEAH--GA 194
Query: 340 LGPTGRGVTEYFGIDPR--------EVDILMGTYTKSFGS--MGGYVAGSKSTIDYIRAN 389
+F P DI++ + K+ + G + ++ R N
Sbjct: 195 ----------HFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVN 244
Query: 390 SHVRSYATSMPPPVAMQILTSM---RIIMGLENGDE 422
+ + ++ P + IL S+ R +M LE G E
Sbjct: 245 EALNLHQSTSP---SYLILASLDVARAMMALE-GKE 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,747,773
Number of extensions: 2079427
Number of successful extensions: 1704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 50
Length of query: 430
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 330
Effective length of database: 6,502,202
Effective search space: 2145726660
Effective search space used: 2145726660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)