RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2206
(430 letters)
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 99.9 bits (248), Expect = 1e-23
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Query: 290 HSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349
R +LI +G+FSMDG I L + L +KY A + VD++H++G +G GRG E
Sbjct: 171 AREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHE 230
Query: 350 YFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQIL 408
Y + R VDI+ GT K+ G+ GGY A K ++++R S ++ S+ P + +
Sbjct: 231 YCDVMGR-VDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASI 289
Query: 409 TSMRIIM 415
+ ++
Sbjct: 290 KVLEMVE 296
Score = 38.3 bits (88), Expect = 0.001
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123
R +TS A IT+ D +N + NYLG + L +K +
Sbjct: 29 RIITSAQQADITVADGSH---------------VINFCANNYLGLANHPDLI-AAAKAGM 72
Query: 124 KQSGCALCSP 133
G + S
Sbjct: 73 DSHGFGMASV 82
Score = 38.3 bits (88), Expect = 0.001
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260
R +TS A IT+ D +N + NYLG + L +K +
Sbjct: 29 RIITSAQQADITVADGSH---------------VINFCANNYLGLANHPDLI-AAAKAGM 72
Query: 261 KQSGCALCSP 270
G + S
Sbjct: 73 DSHGFGMASV 82
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 76.9 bits (188), Expect = 6e-16
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 286 EGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR 345
+ P LI E ++SMDG + EI + ++ A Y+DE H++G GP G
Sbjct: 167 RELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGA 226
Query: 346 GVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAM 405
GV E G+ R +DI GT K++G GGY+A S +D +R+ + ++TS+PP +A
Sbjct: 227 GVAERDGLMHR-IDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAA 285
Query: 406 QILTSMRIIMGLEN 419
S+ + E
Sbjct: 286 GAQASIAFLKTAEG 299
Score = 39.5 bits (91), Expect = 5e-04
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 21/127 (16%)
Query: 192 YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGL 251
YR +D R + P A D G + +YLG G++ +
Sbjct: 19 YRTFID-IEREKGAFPKAQWNRPD-------------GGKQDITVWCGNDYLGMGQHPVV 64
Query: 252 CTERSKESVKQSGCALCSPSAPSSLEAGLQ--KALLEGQPHSGKPWRKILIVVEGIFSMD 309
E+++ G + +G LE + L+ + D
Sbjct: 65 L-AAMHEALEAVGAGSGG----TRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNAND 119
Query: 310 GSIVRLP 316
++ L
Sbjct: 120 ATLSTLR 126
Score = 37.2 bits (85), Expect = 0.003
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 15/82 (18%)
Query: 55 YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGL 114
YR +D R + P A D G + +YLG G++ +
Sbjct: 19 YRTFID-IEREKGAFPKAQWNRPD-------------GGKQDITVWCGNDYLGMGQHPVV 64
Query: 115 CTERSKESVKQSGCALCSPSGE 136
E+++ G
Sbjct: 65 L-AAMHEALEAVGAGSGGTRNI 85
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 70.7 bits (172), Expect = 6e-14
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 294 PWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGI 353
+ ++V EG+FSMDG L EI ++ ++ +L VD+AH G +G GRG +
Sbjct: 165 CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV 224
Query: 354 DPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413
P + + G K FG G V S + DY+ + Y+TSMPP A + S+ +
Sbjct: 225 KPELLVVTFG---KGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAV 281
Query: 414 IM 415
I
Sbjct: 282 IR 283
Score = 48.0 bits (113), Expect = 1e-06
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 20/129 (15%)
Query: 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123
PV G + DR+ LN +S +YLG + + ++
Sbjct: 23 YPVAQGAGRWLVADDRQ----------------YLNFSSNDYLGLSHHPQI-IRAWQQGA 65
Query: 124 KQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFANGISKSNGLLSSNGGYPDLYEKF 183
+Q G + A + + A G++ + +G ++ + K
Sbjct: 66 EQFGIGSGGSGHVSGYSVVHQALEEEL---AEWLGYSRALLFISGFAANQAVIAAMMAKE 122
Query: 184 VLFYSRYVY 192
+ +
Sbjct: 123 DRIAADRLS 131
Score = 44.2 bits (103), Expect = 2e-05
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 17/70 (24%)
Query: 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260
PV G + DR+ LN +S +YLG + + ++
Sbjct: 23 YPVAQGAGRWLVADDRQ----------------YLNFSSNDYLGLSHHPQI-IRAWQQGA 65
Query: 261 KQSGCALCSP 270
+Q G
Sbjct: 66 EQFGIGSGGS 75
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 51.1 bits (121), Expect = 1e-07
Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 10/147 (6%)
Query: 282 KALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG 341
+ +E + P+ I S+ L + + KY + +D A
Sbjct: 173 ERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAY 232
Query: 342 PTGRGVTEYFGIDPREV--------DILMGTYTKSFGSMGGYVAGSKST--IDYIRANSH 391
+ EY ++ D+L + K G + K D
Sbjct: 233 FIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRT 292
Query: 392 VRSYATSMPPPVAMQILTSMRIIMGLE 418
+ P ++ R+ +GL
Sbjct: 293 LCVVQEGFPTYGGLEGGAMERLAVGLY 319
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 46.4 bits (109), Expect = 4e-06
Identities = 15/141 (10%), Positives = 40/141 (28%), Gaps = 7/141 (4%)
Query: 282 KALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG 341
+ ++ + G ++ F + + EI ++ Y ++ A+
Sbjct: 200 ENAIKKEIELGNRPC---VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY--AIQN 254
Query: 342 PTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP 401
+ VD ++ + K+ + G + ++I+ S S P
Sbjct: 255 NYYLEKLKKAFKYR--VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATP 312
Query: 402 PVAMQILTSMRIIMGLENGDE 422
V + +
Sbjct: 313 VVNTLVSLLSMGSKNYLELVK 333
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 34.5 bits (78), Expect = 0.022
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 9/126 (7%)
Query: 311 SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF- 369
S+ L E+ + ++ ++ +D A +Y +EV M Y +
Sbjct: 201 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALT 260
Query: 370 --------GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421
++GG VA + + A + + + E +
Sbjct: 261 MSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE 320
Query: 422 EGNVRH 427
E + +
Sbjct: 321 EEYLHY 326
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Bacillus subtilis [TaxId: 1423]}
Length = 269
Score = 30.7 bits (69), Expect = 0.29
Identities = 21/150 (14%), Positives = 35/150 (23%), Gaps = 14/150 (9%)
Query: 254 ERSKESVKQSGCALCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG--- 310
E + K +G + + S + G P I G
Sbjct: 50 EEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPV---------ILDPVGAGA 100
Query: 311 SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG 370
+ R + + + A I G G+D E + +
Sbjct: 101 TPFRTESARDIIREVRLAAIRGNAAEIAHT--VGVTDWLIKGVDAGEGGGDIIRLAQQAA 158
Query: 371 SMGGYVAGSKSTIDYIRANSHVRSYATSMP 400
V +D I SHV +
Sbjct: 159 QKLNTVIAITGEVDVIADTSHVYTLHNGHK 188
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 208
Score = 28.0 bits (62), Expect = 1.6
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 330 YVDEAHSIGALGPTGRGVTEY-FGIDPREVDILMGTYTKSFGSMGGYVAG 378
+ E G +GP G V RE+ + TY + G
Sbjct: 148 FTMELAKKGFIGP-GVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHA 196
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 190
Score = 27.4 bits (61), Expect = 2.9
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 110 ENTGLCTERSKESVKQSGC---ALCSPSGEIASMLSKGASKSNILFQAHTNGFAN 161
ENT + E K+ G + S G+ A + A ++ + GF
Sbjct: 15 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVR 69
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 27.1 bits (59), Expect = 4.4
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 311 SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG 370
S +P++ ++ + E R G+ + T +++G
Sbjct: 189 SNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDGVLGVRAEYLAAARQTIDETYG 248
Query: 371 SMGGYVAG---SKSTIDYIRAN 389
S+GGY+ S++T++ +R
Sbjct: 249 SLGGYLRDAGISQATVNRMRGV 270
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 26.1 bits (58), Expect = 5.5
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 300 IVVEGIFSMDGSIVRLPEIV-RLKNKYK-AYLYVDEAHSIGALGPTGRGV 347
I + +F + I+ L + LK++ K ++ +D + LG +
Sbjct: 18 IEPDVVFLLKSDILNLKFHLKILKDRGKTVFVDMD---FVNGLGEGEEAI 64
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 26.1 bits (57), Expect = 7.8
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 409 TSMRIIMGLENGDEGNVR 426
+ +I G+ D G VR
Sbjct: 39 VFLELIAGIVKPDRGEVR 56
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 25.7 bits (56), Expect = 9.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 409 TSMRIIMGLENGDEGNVR 426
T + +I G DEG V
Sbjct: 45 TLINVITGFLKADEGRVY 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,615,212
Number of extensions: 77676
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 22
Length of query: 430
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,199,356
Effective search space: 410179752
Effective search space used: 410179752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)