BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2207
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 2 KVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN--EQHLLSFLNRR 59
KV P E + L A S ER EW + A+ E+ Q L +F
Sbjct: 293 KVSRPVXEKVPYALKIETSESCLXLSASSCAERDEWYGCLSRALPEDYKAQALAAF--HH 350
Query: 60 SLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119
S+ ++LG+ P +P + V C C F++T RRHHC ACGK+VC CS
Sbjct: 351 SVEIRERLGVSLGERPPTLVPVTHVXXCXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410
Query: 120 PLEYKKFRNFRVCEECY 136
PL+Y K R +VC+ C+
Sbjct: 411 PLKYLKDRXAKVCDGCF 427
>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Ethanol Decreased 4 Protein
Length = 109
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 218 KKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG 277
K S + WK WFV+K++V+Y Y ASED+ AL S P+LG+ + + ++++ VFQL H+G
Sbjct: 18 KGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKG 77
Query: 278 QDPLVFGADNEQSYERWMKAMREATT 303
VF AD+ S +RW+ A +E T
Sbjct: 78 MVFYVFKADDAHSTQRWIDAFQEGTV 103
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 65 SIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK 124
S+ L LG+ P W+PDS C C FT T RRHHCRACGKV CG C + L+Y
Sbjct: 1 SMEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL 60
Query: 125 KFRNFRVCEECYHYLVQEFDDEDSNMFERV 154
+ + RVC CY + + FER+
Sbjct: 61 E-KEARVCVVCYETI------SKAQAFERM 83
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 213 SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 267
+GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A+ DN
Sbjct: 25 AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 84
Query: 268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304
K+ F+ +H G F A++ + E W++AM EA +
Sbjct: 85 KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 213 SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 267
+GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A+ DN
Sbjct: 14 AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 73
Query: 268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
K+ F+ +H G F A++ + E W++AM EA
Sbjct: 74 KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 61.6 bits (148), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 78 WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRVCEECY 136
W D C C VFT T RRHHCR CG V+CG CS + A + + RVC+ CY
Sbjct: 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACY 74
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 75 APLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD-YLAPLEYKKFRNFRVCE 133
AP W+ C RC F V R+HHCRACG++ CG CS Y ++ + RVCE
Sbjct: 158 APDWVDAEE---CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCE 214
Query: 134 ECYHYL 139
CY L
Sbjct: 215 PCYEQL 220
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 74 VAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL-EYKKFRNFRVC 132
AP W D RV C RC FT T R+HHCR CG+V CG C+ PL +Y + RVC
Sbjct: 154 TAPNWA-DGRV--CHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVC 210
Query: 133 EECYHYL 139
+ C+ L
Sbjct: 211 DGCFAAL 217
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 78 WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS--DYLAPLEYKKFRNFRVCEEC 135
W D+ V C C F+VT RRHHCR CG + C CS + L P K RVC+ C
Sbjct: 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKP---VRVCDAC 119
Query: 136 YHYL 139
++ L
Sbjct: 120 FNDL 123
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 60 SLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPC-SDYL 118
S S I E+N W+ D + C++C F+++ R+HHCR CG + C C S+ L
Sbjct: 2 SSGSSGIKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 61
Query: 119 APLEYKKFRNFRVCEECYHYLVQEFDDEDS 148
A Y K RVC+ C+ L+Q S
Sbjct: 62 ALPSYPK--PVRVCDSCHTLLLQRCSSTAS 89
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 214 GWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD--NFK 268
GWL+K+ WK+ WFVL D ++ Y+ ++ L SI + +++ L +D N K
Sbjct: 25 GWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRK 84
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
Y F+ H F D + E WMKAM +A
Sbjct: 85 YAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA 118
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 66 IPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPC-SDYLAPLEYK 124
I E+N W+ D + C++C F+++ R+HHCR CG + C C S+ LA Y
Sbjct: 1 IKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYP 60
Query: 125 KFRNFRVCEECYHYLVQ 141
K RVC+ C+ L+Q
Sbjct: 61 K--PVRVCDSCHTLLLQ 75
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 78 WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS--DYLAPLEYKKFRNFRVCEEC 135
W D+ V C C F+VT RRHHCR CG + C CS + L P K RVC+ C
Sbjct: 3 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKP---VRVCDAC 59
Query: 136 YHYL 139
++ L
Sbjct: 60 FNDL 63
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 214 GWLHKK--SG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL--EALNEQDNFK 268
GWLHK+ SG R WKR WFVL ++ YK S + L S+ + Y + + +
Sbjct: 15 GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRR 74
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
+ F +H G V AD + W++A+ A+
Sbjct: 75 FTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 108
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIK--ALLSIPVLGYELE 259
++ SG GWL K+ +NW++ +FVL+ Q +Y YK ED K + +P +
Sbjct: 2 SSGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61
Query: 260 ALNEQDNFKYVFQL-------KHQGQDPLVFGADNEQSYERWMKAMR 299
A N ++ K+VF++ GQD V A ++ E W+K +R
Sbjct: 62 ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLR 108
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 44.3 bits (103), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL-EYKKFRNFRVCEECY 136
C C+ F++ R+HHCR+CG V C S PL + + RVC+ C+
Sbjct: 14 CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 64
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 214 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 269
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 7 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 270 VFQLKHQGQ 278
++ H+GQ
Sbjct: 67 LYNPSHKGQ 75
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 214 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 269
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 7 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 270 VFQLKHQGQ 278
++ H+GQ
Sbjct: 67 LYNPSHKGQ 75
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 214 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 269
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 270 VFQLKHQGQ 278
++ H+GQ
Sbjct: 277 LYNPSHKGQ 285
>pdb|3CXB|B Chain B, Crystal Structure Of Sifa And Skip
Length = 112
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 214 GWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
G LH K+G +WK + VL + ++Y+Y D+ LLS+ + G + +
Sbjct: 4 GMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTT 63
Query: 268 --KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
+ FQ+ + L A++E WM+ + +A +
Sbjct: 64 DRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 214 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 269
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 270 VFQLKHQGQ 278
++ H+GQ
Sbjct: 277 LYNPSHKGQ 285
>pdb|3HW2|B Chain B, Crystal Structure Of The Sifa-skip(ph) Complex
Length = 105
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 214 GWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
G LH K+G +WK + VL + ++Y+Y D+ LLS+ + G + +
Sbjct: 6 GMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTT 65
Query: 268 --KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
+ FQ+ + L A++E WM+ + +A +
Sbjct: 66 DRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 103
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 214 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNE-QDNFKY 269
GWL K GR WKR WF+L D +Y ++ + D + IP+ + E L+ + N
Sbjct: 9 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFE 68
Query: 270 VFQLKHQGQ 278
++ H+GQ
Sbjct: 69 LYNPSHKGQ 77
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 214 GWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFK 268
GWL K G + WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 19 GWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCF 78
Query: 269 YVFQLKHQGQ 278
++ H+GQ
Sbjct: 79 ELYNPSHKGQ 88
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 204 TANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYE--LE 259
++ SG G++ KK R NW WFVLK ++ Y SED+K +L +E
Sbjct: 2 SSGSSGVLKQGYMMKKGHRRKNWTERWFVLKPNII-SYYVSEDLKDKKGDILLDENCCVE 60
Query: 260 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304
+L ++D K +F +K + + +D ++ E W++A+ L
Sbjct: 61 SLPDKDGKKCLFLVKCFDKTFEISASDKKKKQE-WIQAIHSTIHL 104
>pdb|1WI1|A Chain A, Solution Structure Of The Ph Domain Of Human Calcium-
Dependent Activator Protein For Secretion (Caps)
Length = 126
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 204 TANDSGSQHSGWL---HKKSGRNWKRYWFVLKDQVMYKY------KASEDIKALLSIPVL 254
++ SG +HSG+L K + WK+ +FVL Y + + + + LL +
Sbjct: 2 SSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLD-- 59
Query: 255 GYELEALNEQDNF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
GY ++ + Q + F +G D ++F +D+EQ W++AM AT S
Sbjct: 60 GYTVDYTDPQPGLEGGRAFFNAVKEG-DTVIFASDDEQDRILWVQAMYRATGQS 112
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 214 GWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPV 253
GWL K G + WKR WF+L D +Y ++ + D + IP+
Sbjct: 15 GWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPL 57
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 33.9 bits (76), Expect = 0.10, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 80 PDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAP 120
P + C C++ F+V +R C CG C C + P
Sbjct: 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVP 50
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 15 FSVIAISRSFTLRARSANERLEWIDAIQTA 44
F + I R +TLRA S NER W+ I+ A
Sbjct: 312 FHISHIDRVYTLRAESINERTAWVQKIKAA 341
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 15 FSVIAISRSFTLRARSANERLEWIDAIQTA 44
F + I R +TLRA S NER W+ I+ A
Sbjct: 311 FHISHIDRVYTLRAESINERTAWVQKIKAA 340
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 214 GWLHKKSG-------RNWKRYWFVLK-DQVMYKYKASED 244
GWLH G RNWK+ WFVL+ ++MY SE+
Sbjct: 62 GWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEE 100
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 13 NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLG 72
N +I R+F L A S + +W + +Q + + ++ Q+++ L++G
Sbjct: 122 NGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVG 181
Query: 73 KVAPLWIPDSRVSMCQRCTSVFTVTFRR-HHCRA 105
+ + DS R S +T R HC A
Sbjct: 182 LIDSVCASDS----PDRPNSFVIITANRVLHCNA 211
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From Mus
Musculus
Length = 88
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 85 SMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFD 144
S C C FT+ + + C+ CG+ C C + A + +VC++C+ L +
Sbjct: 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSS 69
Query: 145 DEDS 148
D S
Sbjct: 70 DNAS 73
>pdb|3A8N|A Chain A, Crystal Structure Of The Tiam1 Phccex Domain
Length = 279
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 222 RNWKRYWFVLKDQVMYKYKASEDIKALL---SIP-----VLGYELEALNEQDNFKYVFQL 273
R WK YW LK ++ Y+ D ++ + S+P V ++A+ E +VF L
Sbjct: 37 RKWKHYWVSLKGCTLFFYET--DGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCL 94
Query: 274 KHQGQDPLVFGADNEQSYERWMKAMREA 301
+ D +F ++ E W+ A+ A
Sbjct: 95 SNSLGDAFLFQTTSQTELENWITAIHSA 122
>pdb|1V61|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Alpha-Pix
Length = 132
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 228 WFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG 284
+F+L V+ AS + + IP+ G + L+E + +F++ + +V
Sbjct: 48 YFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVH 107
Query: 285 ADNEQSYERWMKAMREAT 302
+N Q ++ WM+ + T
Sbjct: 108 CNNNQDFQEWMEQLNRLT 125
>pdb|2LKO|A Chain A, Structural Basis Of Phosphoinositide Binding To Kindlin-2
Pleckstrin Homology Domain In Regulating Integrin
Activation
Length = 138
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 222 RNWKRYWFVLKDQVMYKYKASEDIKALLS--IPVLGYELEA----LNEQDNFKYVFQLKH 275
+ +K+YW KD + YK+ E+ + + + G E+ ++ N K + +
Sbjct: 28 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA- 86
Query: 276 QGQDPLVFGADNEQSYERWMKAMREAT 302
+G + + DNE+ Y WM A R A+
Sbjct: 87 EGMNEIWLRCDNEKQYAHWMAACRLAS 113
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
+N F ++ SR+F ++A S E WI A+ AI
Sbjct: 77 DNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAI 110
>pdb|4F7H|A Chain A, The Crystal Structure Of Kindlin-2 Pleckstrin Homology
Domain In Free Form
Length = 173
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 222 RNWKRYWFVLKDQVMYKYKASEDIKALLS--IPVLGYELEA----LNEQDNFKYVFQLKH 275
+ +K+YW KD + YK+ E+ + + + G E+ ++ N K + +
Sbjct: 64 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA- 122
Query: 276 QGQDPLVFGADNEQSYERWMKAMREAT 302
+G + + DNE+ Y WM A R A+
Sbjct: 123 EGMNEIWLRCDNEKQYAHWMAACRLAS 149
>pdb|2W2W|A Chain A, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|B Chain B, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|C Chain C, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|D Chain D, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|E Chain E, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|F Chain F, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|G Chain G, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|H Chain H, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|I Chain I, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|J Chain J, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|K Chain K, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|L Chain L, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2X|D Chain D, Complex Of Rac2 And Plcg2 Spph Domain
Length = 124
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 264 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
Q +F ++ + K QG P+ F D + W +++RE T
Sbjct: 80 QKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118
>pdb|2K2J|A Chain A, Nmr Solution Structure Of The Split Ph Domain From
Phospholipase C Gamma 2
Length = 124
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 264 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
Q +F ++ + K QG P+ F D + W +++RE T
Sbjct: 80 QKSFVFILEPKQQGDPPVEFATDRVEELFEWFQSIREIT 118
>pdb|2W2X|C Chain C, Complex Of Rac2 And Plcg2 Spph Domain
Length = 124
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 264 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
Q +F ++ + K QG P+ F D + W +++RE T
Sbjct: 80 QKSFVFILEPKQQGDPPVEFATDRVEELFEWFQSIREIT 118
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46
+N+F V+ R+F R ER +WI + A+K
Sbjct: 65 DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALK 99
>pdb|3A8P|A Chain A, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|B Chain B, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|C Chain C, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|D Chain D, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8Q|A Chain A, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|B Chain B, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|C Chain C, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|D Chain D, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
Length = 263
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 222 RNWKRYWFVLKDQVMYKY----KASEDIKALLSIPVLGYE--LEALNEQDNFKYVFQLKH 275
R WK+YW LK + Y K S + + + + ++++ E ++VF L +
Sbjct: 37 RKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSN 96
Query: 276 QGQDPLVFGADNEQSYERWMKAMREA 301
D +F A ++ E W+ A+ A
Sbjct: 97 SCGDVYLFQATSQTDLENWVTAIHSA 122
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data
Set Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 38 IDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVS 85
+ I+ AIK+ E + LN R + P NL V P+ PD RVS
Sbjct: 54 VQKIRDAIKKGEACSVRLLNYR---KDGTPFWNLLTVTPIKTPDGRVS 98
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 15 FSVIAISRSFTLRARSANERLEWIDAIQTA 44
F + I R +TLR + NER W+ I+ A
Sbjct: 331 FHISHIDRVYTLRTDNINERTAWVQKIKAA 360
>pdb|2YS3|A Chain A, Solution Structure Of The Ph Domain Of Kindlin-3 From
Human
Length = 137
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 222 RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQDNFKYVFQL---KHQ 276
+ ++++W V K+ + YK+ ++ + + + G E+ K+ +L +
Sbjct: 26 KGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPE 85
Query: 277 GQDPLVFGADNEQSYERWMKAMREAT 302
G + +EQ Y RWM R A+
Sbjct: 86 GMSEIYLRCQDEQQYARWMAGCRLAS 111
>pdb|1BTN|A Chain A, Structure Of The Binding Site For Inositol Phosphates In A
Ph Domain
pdb|1MPH|A Chain A, Pleckstrin Homology Domain From Mouse Beta-Spectrin, Nmr,
50 Structures
Length = 106
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 218 KKSGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYEL--EALNEQDNFKYVF 271
K S R+W + V+ +Q M YK A+ I +PV E E + K+VF
Sbjct: 17 KASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVF 76
Query: 272 QLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+L+ + +F A +++ W++A+ A
Sbjct: 77 KLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The
Kindlin-1 Pleckstrin Homology Domain
Length = 165
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 225 KRYWFVLKDQVM--YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQL---KHQGQD 279
K+YWFV KD + +K K E + + + + G E+ K+ +L G +
Sbjct: 46 KQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMN 105
Query: 280 PLVFGADNEQSYERWMKA 297
+ D+E Y RWM A
Sbjct: 106 EVYLRCDHEDQYARWMAA 123
>pdb|3ODN|A Chain A, The Crystal Structure Of Drosophila Dally-Like Protein
Core Domain
Length = 506
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 90 CTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSN 149
CT T + HC AC PC++Y V + C HY EFD E N
Sbjct: 223 CTGALT---KMQHCGACKGYTEKPCTNYCV----------NVIKGCLHYQ-HEFDSEWEN 268
Query: 150 MFERVKAVA 158
+ VA
Sbjct: 269 FAMAMDKVA 277
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family B Member 1 From Mouse
Length = 130
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVL 231
++ SG GWL ++S R WKR WF L
Sbjct: 2 SSGSSGLVRGGWLWRQSSILRRWKRNWFAL 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,034,866
Number of Sequences: 62578
Number of extensions: 357630
Number of successful extensions: 966
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 67
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)