Query psy2207
Match_columns 305
No_of_seqs 226 out of 1518
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:56:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4424|consensus 100.0 2E-31 4.4E-36 245.6 10.0 255 1-303 325-596 (623)
2 KOG1729|consensus 99.9 3.2E-27 6.9E-32 207.0 6.5 187 6-241 101-288 (288)
3 KOG1117|consensus 99.9 3.1E-22 6.7E-27 191.2 9.0 265 13-301 247-600 (1186)
4 cd01260 PH_CNK Connector enhan 99.8 1E-19 2.2E-24 136.6 11.8 89 212-301 2-96 (96)
5 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 4E-19 8.7E-24 132.9 11.1 87 212-301 1-93 (95)
6 cd01233 Unc104 Unc-104 pleckst 99.8 1.7E-18 3.7E-23 130.8 12.4 91 210-301 2-97 (100)
7 cd01251 PH_centaurin_alpha Cen 99.8 2.8E-18 6E-23 130.2 12.1 91 212-303 1-101 (103)
8 cd01247 PH_GPBP Goodpasture an 99.8 8.8E-18 1.9E-22 124.4 11.6 86 212-300 1-90 (91)
9 PF01363 FYVE: FYVE zinc finge 99.8 2.1E-19 4.5E-24 126.4 2.4 65 76-140 1-68 (69)
10 cd01252 PH_cytohesin Cytohesin 99.8 1.7E-17 3.7E-22 130.6 13.0 91 212-303 2-114 (125)
11 cd01264 PH_melted Melted pleck 99.7 1.4E-17 3E-22 124.4 11.1 91 211-302 1-101 (101)
12 cd01238 PH_Tec Tec pleckstrin 99.7 3.7E-17 8.1E-22 124.7 10.7 89 211-300 1-105 (106)
13 cd01235 PH_SETbf Set binding f 99.7 7.6E-17 1.6E-21 122.1 12.2 90 212-302 1-101 (101)
14 cd01257 PH_IRS Insulin recepto 99.7 8.5E-17 1.8E-21 120.8 12.1 88 210-300 2-100 (101)
15 cd01246 PH_oxysterol_bp Oxyste 99.7 1.3E-16 2.7E-21 118.3 11.9 87 212-301 1-91 (91)
16 cd01236 PH_outspread Outspread 99.7 1.4E-16 3E-21 120.1 11.1 88 212-300 1-102 (104)
17 PF00169 PH: PH domain; Inter 99.7 1E-15 2.2E-20 115.3 13.3 93 211-303 2-104 (104)
18 cd01250 PH_centaurin Centaurin 99.7 5.7E-16 1.2E-20 115.5 11.2 89 212-301 1-94 (94)
19 cd01266 PH_Gab Gab (Grb2-assoc 99.7 5E-16 1.1E-20 119.0 10.9 89 212-301 1-107 (108)
20 smart00064 FYVE Protein presen 99.7 3.5E-17 7.6E-22 114.7 3.6 65 76-140 2-67 (68)
21 cd01245 PH_RasGAP_CG5898 RAS G 99.7 4.9E-16 1.1E-20 115.6 9.6 87 213-300 2-97 (98)
22 cd01263 PH_anillin Anillin Ple 99.6 1.8E-15 4E-20 117.0 9.6 91 211-301 2-122 (122)
23 cd01241 PH_Akt Akt pleckstrin 99.6 9.1E-15 2E-19 110.8 11.3 91 211-301 2-101 (102)
24 cd01253 PH_beta_spectrin Beta- 99.6 1.1E-14 2.3E-19 110.9 10.9 81 221-301 20-104 (104)
25 cd01237 Unc112 Unc-112 pleckst 99.6 7.7E-15 1.7E-19 109.3 9.0 83 221-303 17-104 (106)
26 cd01244 PH_RasGAP_CG9209 RAS_G 99.6 2.4E-14 5.2E-19 106.9 10.8 79 221-301 18-98 (98)
27 KOG0930|consensus 99.6 1.1E-14 2.4E-19 124.3 9.7 95 208-303 258-376 (395)
28 cd01230 PH_EFA6 EFA6 Pleckstri 99.5 1.2E-13 2.6E-18 106.4 11.8 83 221-303 23-112 (117)
29 KOG1818|consensus 99.5 6.2E-15 1.3E-19 140.1 2.9 83 60-145 144-227 (634)
30 PTZ00303 phosphatidylinositol 99.5 1.9E-14 4.1E-19 137.2 3.8 68 73-140 448-530 (1374)
31 KOG1819|consensus 99.5 7.8E-15 1.7E-19 134.1 1.1 68 73-140 890-963 (990)
32 PF15409 PH_8: Pleckstrin homo 99.4 1.1E-12 2.3E-17 95.3 10.5 83 214-301 1-88 (89)
33 cd01256 PH_dynamin Dynamin ple 99.4 1.4E-12 3.1E-17 94.4 10.5 92 211-302 2-105 (110)
34 cd01254 PH_PLD Phospholipase D 99.4 1.3E-12 2.8E-17 102.0 11.2 80 221-301 30-121 (121)
35 PF15410 PH_9: Pleckstrin homo 99.4 2.5E-12 5.4E-17 100.1 11.7 91 212-302 2-118 (119)
36 smart00233 PH Pleckstrin homol 99.4 7.3E-12 1.6E-16 92.9 13.1 92 211-302 2-101 (102)
37 cd01220 PH_CDEP Chondrocyte-de 99.4 6.8E-12 1.5E-16 94.1 11.9 92 211-303 3-98 (99)
38 cd00065 FYVE FYVE domain; Zinc 99.4 2.4E-13 5.2E-18 91.7 2.8 54 84-137 2-56 (57)
39 KOG1841|consensus 99.4 1.1E-13 2.3E-18 136.7 1.2 69 67-135 540-608 (1287)
40 PF15413 PH_11: Pleckstrin hom 99.3 2.8E-11 6E-16 93.1 12.8 89 212-301 1-112 (112)
41 cd01234 PH_CADPS CADPS (Ca2+-d 99.3 2.8E-12 6E-17 93.7 6.2 94 211-305 3-113 (117)
42 KOG3531|consensus 99.3 1.1E-12 2.3E-17 126.4 5.2 92 211-303 925-1020(1036)
43 cd00821 PH Pleckstrin homology 99.3 1.5E-11 3.3E-16 90.3 10.2 90 212-301 1-96 (96)
44 cd01219 PH_FGD FGD (faciogenit 99.3 4.4E-11 9.6E-16 90.3 12.0 91 211-303 3-100 (101)
45 cd00900 PH-like Pleckstrin hom 99.2 1.3E-10 2.9E-15 85.8 11.7 89 213-301 2-99 (99)
46 KOG1090|consensus 99.2 7.5E-12 1.6E-16 122.3 2.8 96 206-302 1630-1731(1732)
47 KOG1842|consensus 99.1 1E-11 2.2E-16 112.4 -0.8 69 74-142 170-261 (505)
48 cd01220 PH_CDEP Chondrocyte-de 99.1 2.2E-10 4.8E-15 85.9 6.0 46 1-46 52-98 (99)
49 cd01218 PH_phafin2 Phafin2 Pl 99.1 3.3E-10 7.2E-15 85.4 6.5 49 1-49 53-102 (104)
50 cd01219 PH_FGD FGD (faciogenit 99.0 3.2E-10 6.9E-15 85.7 5.5 46 1-46 55-100 (101)
51 cd01242 PH_ROK Rok (Rho- assoc 98.8 1.5E-07 3.2E-12 70.4 10.9 90 212-301 2-109 (112)
52 cd01243 PH_MRCK MRCK (myotonic 98.8 2.1E-07 4.6E-12 70.6 11.6 91 211-301 3-118 (122)
53 cd01259 PH_Apbb1ip Apbb1ip (Am 98.7 3.9E-08 8.5E-13 73.6 7.2 90 212-301 2-107 (114)
54 KOG1843|consensus 98.7 3.1E-09 6.8E-14 95.6 1.2 73 68-140 144-219 (473)
55 cd01218 PH_phafin2 Phafin2 Pl 98.7 3.3E-07 7.2E-12 69.1 11.5 92 211-303 5-99 (104)
56 cd01249 PH_oligophrenin Oligop 98.6 5.7E-07 1.2E-11 67.1 9.2 87 212-299 1-102 (104)
57 cd01264 PH_melted Melted pleck 98.5 1E-07 2.3E-12 71.3 4.4 36 10-45 66-101 (101)
58 cd01261 PH_SOS Son of Sevenles 98.5 2.1E-07 4.5E-12 71.0 5.8 43 4-46 67-110 (112)
59 KOG0690|consensus 98.5 1.8E-07 4E-12 83.0 5.6 96 207-302 12-116 (516)
60 cd01239 PH_PKD Protein kinase 98.5 1.1E-06 2.4E-11 66.2 8.9 89 212-301 2-117 (117)
61 cd01226 PH_exo84 Exocyst compl 98.5 3.3E-07 7.1E-12 68.0 5.7 43 3-45 56-98 (100)
62 cd01261 PH_SOS Son of Sevenles 98.5 3.5E-06 7.5E-11 64.3 11.1 93 211-303 5-110 (112)
63 KOG3640|consensus 98.4 2.9E-07 6.3E-12 90.7 5.7 96 208-303 988-1107(1116)
64 cd01251 PH_centaurin_alpha Cen 98.4 5.8E-07 1.2E-11 68.1 5.3 35 12-46 67-101 (103)
65 cd01265 PH_PARIS-1 PARIS-1 ple 98.3 1E-06 2.3E-11 65.6 5.4 35 11-45 60-94 (95)
66 KOG1409|consensus 98.3 1.5E-07 3.3E-12 83.4 0.7 67 73-142 274-352 (404)
67 KOG0521|consensus 98.3 1.6E-06 3.5E-11 87.0 7.0 119 10-132 333-470 (785)
68 KOG2059|consensus 98.3 1.6E-06 3.5E-11 83.3 6.4 94 209-304 563-666 (800)
69 cd01257 PH_IRS Insulin recepto 98.2 2.9E-06 6.2E-11 63.8 5.6 36 8-43 65-100 (101)
70 cd01258 PH_syntrophin Syntroph 98.2 8.1E-06 1.8E-10 61.6 7.7 87 214-300 3-107 (108)
71 cd01233 Unc104 Unc-104 pleckst 98.2 3.4E-06 7.4E-11 63.5 5.4 35 11-45 64-98 (100)
72 PF14593 PH_3: PH domain; PDB: 98.2 2.4E-05 5.2E-10 58.9 9.7 89 207-303 10-100 (104)
73 cd01244 PH_RasGAP_CG9209 RAS_G 98.1 2.8E-06 6.1E-11 63.5 4.3 33 11-43 65-97 (98)
74 cd01222 PH_clg Clg (common-sit 98.1 7.6E-06 1.7E-10 60.9 6.3 44 1-45 49-95 (97)
75 cd01236 PH_outspread Outspread 98.1 6.8E-06 1.5E-10 62.1 5.1 33 11-43 70-102 (104)
76 cd01260 PH_CNK Connector enhan 98.0 6E-06 1.3E-10 61.5 4.3 42 3-44 54-96 (96)
77 PLN00188 enhanced disease resi 98.0 4E-05 8.6E-10 75.0 10.2 94 210-303 4-110 (719)
78 KOG3751|consensus 98.0 1.8E-05 3.9E-10 73.9 6.8 92 210-301 317-423 (622)
79 KOG0705|consensus 98.0 4.3E-06 9.2E-11 78.8 2.7 107 7-123 440-548 (749)
80 KOG0932|consensus 97.9 2.2E-06 4.8E-11 80.4 0.7 93 210-302 506-617 (774)
81 cd01238 PH_Tec Tec pleckstrin 97.9 1.6E-05 3.4E-10 60.5 4.8 33 11-43 73-105 (106)
82 KOG0521|consensus 97.9 6E-06 1.3E-10 82.9 2.9 92 210-302 274-368 (785)
83 cd01235 PH_SETbf Set binding f 97.9 2.4E-05 5.2E-10 58.7 5.0 35 11-45 67-101 (101)
84 KOG3543|consensus 97.9 3.8E-06 8.2E-11 79.8 0.4 99 206-305 460-568 (1218)
85 cd01224 PH_Collybistin Collybi 97.9 0.00056 1.2E-08 51.7 12.0 92 211-302 3-107 (109)
86 cd01240 PH_beta-ARK Beta adren 97.8 1.5E-05 3.3E-10 59.2 3.3 94 209-303 2-99 (116)
87 cd01250 PH_centaurin Centaurin 97.8 3.2E-05 6.9E-10 57.0 4.7 33 11-43 61-93 (94)
88 cd01226 PH_exo84 Exocyst compl 97.8 0.0004 8.7E-09 51.6 10.2 78 225-303 20-99 (100)
89 cd01246 PH_oxysterol_bp Oxyste 97.8 3.7E-05 8.1E-10 56.2 4.7 34 11-44 57-91 (91)
90 cd01247 PH_GPBP Goodpasture an 97.8 5.5E-05 1.2E-09 55.8 5.5 33 11-43 57-90 (91)
91 PLN02866 phospholipase D 97.8 0.00028 6.1E-09 71.9 12.2 80 222-302 216-307 (1068)
92 PTZ00267 NIMA-related protein 97.7 0.00014 3.1E-09 70.0 9.4 95 209-303 376-477 (478)
93 cd01245 PH_RasGAP_CG5898 RAS G 97.7 4.5E-05 9.7E-10 56.9 4.5 33 10-43 63-97 (98)
94 cd01266 PH_Gab Gab (Grb2-assoc 97.7 6E-05 1.3E-09 57.5 5.3 34 10-43 73-106 (108)
95 cd01225 PH_Cool_Pix Cool (clon 97.7 0.00099 2.1E-08 50.1 10.5 80 223-302 27-109 (111)
96 cd01249 PH_oligophrenin Oligop 97.6 8.8E-05 1.9E-09 55.5 4.4 40 3-42 61-102 (104)
97 cd01254 PH_PLD Phospholipase D 97.6 0.0001 2.2E-09 57.5 4.8 38 7-44 84-121 (121)
98 PF00169 PH: PH domain; Inter 97.6 0.00021 4.5E-09 53.0 6.0 37 9-45 66-103 (104)
99 PF15413 PH_11: Pleckstrin hom 97.6 0.00015 3.4E-09 55.6 5.2 38 7-44 75-112 (112)
100 KOG0248|consensus 97.5 6.1E-05 1.3E-09 72.5 3.3 91 208-303 247-342 (936)
101 cd01252 PH_cytohesin Cytohesin 97.5 0.00024 5.2E-09 55.6 5.9 45 3-47 50-115 (125)
102 cd01231 PH_Lnk LNK-family Plec 97.4 0.00075 1.6E-08 49.6 7.1 80 221-300 18-106 (107)
103 KOG1811|consensus 97.4 1.3E-05 2.8E-10 76.3 -3.0 66 76-141 314-385 (1141)
104 cd01222 PH_clg Clg (common-sit 97.3 0.0079 1.7E-07 44.8 11.3 88 211-302 5-95 (97)
105 cd01230 PH_EFA6 EFA6 Pleckstri 97.3 0.00065 1.4E-08 52.4 5.5 42 6-47 71-113 (117)
106 PF02318 FYVE_2: FYVE-type zin 97.2 0.00023 5E-09 55.2 2.7 52 84-141 54-106 (118)
107 cd01228 PH_BCR-related BCR (br 97.2 0.00035 7.6E-09 50.9 3.4 27 18-44 67-93 (96)
108 KOG0230|consensus 97.2 0.00021 4.5E-09 74.4 2.8 54 83-146 4-57 (1598)
109 cd01262 PH_PDK1 3-Phosphoinosi 97.2 0.0041 8.9E-08 45.1 8.4 85 211-302 2-88 (89)
110 cd01241 PH_Akt Akt pleckstrin 97.2 0.00064 1.4E-08 51.2 4.4 34 9-44 62-101 (102)
111 PTZ00283 serine/threonine prot 97.1 0.0012 2.5E-08 64.1 7.3 95 210-304 373-491 (496)
112 cd01253 PH_beta_spectrin Beta- 97.1 0.00082 1.8E-08 50.7 5.0 35 9-43 68-103 (104)
113 cd00821 PH Pleckstrin homology 97.1 0.001 2.2E-08 47.9 5.1 34 11-44 62-96 (96)
114 cd01223 PH_Vav Vav pleckstrin 97.1 0.0069 1.5E-07 46.2 9.4 91 212-302 6-111 (116)
115 KOG1117|consensus 97.1 0.00022 4.8E-09 70.4 1.6 89 209-302 86-177 (1186)
116 smart00233 PH Pleckstrin homol 97.1 0.0016 3.6E-08 47.3 6.0 36 10-45 65-101 (102)
117 PF15408 PH_7: Pleckstrin homo 97.0 0.00033 7.2E-09 49.7 1.2 87 213-300 1-95 (104)
118 KOG1739|consensus 96.9 0.0013 2.9E-08 61.2 5.2 90 208-301 22-115 (611)
119 cd01224 PH_Collybistin Collybi 96.9 0.0027 5.9E-08 48.0 5.7 34 10-43 70-105 (109)
120 PF15410 PH_9: Pleckstrin homo 96.9 0.0025 5.3E-08 49.5 5.6 40 5-44 77-117 (119)
121 cd01221 PH_ephexin Ephexin Ple 96.9 0.0015 3.3E-08 50.7 4.3 33 10-42 81-119 (125)
122 cd01223 PH_Vav Vav pleckstrin 96.9 0.0022 4.8E-08 48.9 5.1 38 10-47 74-113 (116)
123 PF15406 PH_6: Pleckstrin homo 96.8 0.0039 8.5E-08 46.6 6.0 68 228-300 43-111 (112)
124 cd01263 PH_anillin Anillin Ple 96.8 0.0018 3.8E-08 50.3 3.9 36 9-44 67-122 (122)
125 cd01228 PH_BCR-related BCR (br 96.7 0.0088 1.9E-07 43.7 6.8 80 212-300 5-92 (96)
126 KOG1738|consensus 96.6 0.00031 6.7E-09 67.4 -1.2 64 210-273 562-630 (638)
127 cd01232 PH_TRIO Trio pleckstri 96.6 0.0038 8.2E-08 47.9 4.5 35 12-46 74-113 (114)
128 cd00900 PH-like Pleckstrin hom 96.5 0.0052 1.1E-07 44.4 5.1 35 10-44 62-99 (99)
129 PF12814 Mcp5_PH: Meiotic cell 96.4 0.078 1.7E-06 41.3 11.4 87 213-300 12-119 (123)
130 cd01221 PH_ephexin Ephexin Ple 96.4 0.029 6.3E-07 43.6 8.6 34 266-299 81-119 (125)
131 KOG4236|consensus 96.4 0.0025 5.4E-08 60.6 3.1 94 208-303 411-524 (888)
132 PF15404 PH_4: Pleckstrin homo 96.4 0.045 9.7E-07 45.6 10.1 47 212-258 1-60 (185)
133 KOG1451|consensus 96.3 0.011 2.4E-07 56.5 6.8 92 207-299 262-364 (812)
134 KOG0930|consensus 96.3 0.0076 1.6E-07 52.6 5.3 45 3-47 311-377 (395)
135 KOG3723|consensus 96.2 0.0021 4.6E-08 61.1 1.5 92 210-302 735-836 (851)
136 cd01237 Unc112 Unc-112 pleckst 96.1 0.014 3.1E-07 43.8 5.5 36 10-45 64-103 (106)
137 KOG1841|consensus 95.8 0.0037 8E-08 63.7 1.4 57 73-141 646-702 (1287)
138 KOG3727|consensus 95.5 0.0013 2.7E-08 62.4 -2.9 83 221-303 372-459 (664)
139 KOG0703|consensus 95.5 0.0062 1.4E-07 53.7 1.4 38 83-124 24-61 (287)
140 KOG3549|consensus 95.5 0.044 9.5E-07 49.4 6.6 92 208-303 279-387 (505)
141 KOG0230|consensus 95.2 0.0068 1.5E-07 63.6 0.9 34 79-114 92-125 (1598)
142 KOG0248|consensus 95.2 0.04 8.7E-07 53.7 5.8 92 211-302 359-465 (936)
143 PF15409 PH_8: Pleckstrin homo 94.9 0.049 1.1E-06 39.7 4.4 35 10-44 54-88 (89)
144 cd01232 PH_TRIO Trio pleckstri 94.7 0.74 1.6E-05 35.3 10.5 52 249-302 57-112 (114)
145 cd01242 PH_ROK Rok (Rho- assoc 94.6 0.086 1.9E-06 39.8 5.1 41 5-45 68-110 (112)
146 cd01225 PH_Cool_Pix Cool (clon 94.6 0.071 1.5E-06 40.3 4.6 39 6-44 69-108 (111)
147 COG5347 GTPase-activating prot 94.6 0.016 3.5E-07 52.4 1.4 39 81-123 17-55 (319)
148 KOG3551|consensus 94.5 0.12 2.6E-06 47.4 6.7 88 212-299 294-398 (506)
149 cd01227 PH_Dbs Dbs (DBL's big 94.5 0.15 3.3E-06 40.1 6.6 38 12-49 80-119 (133)
150 cd01243 PH_MRCK MRCK (myotonic 94.1 0.12 2.6E-06 39.6 5.1 38 6-43 73-117 (122)
151 cd01248 PH_PLC Phospholipase C 93.7 0.69 1.5E-05 35.4 8.8 33 268-300 79-114 (115)
152 PF12814 Mcp5_PH: Meiotic cell 93.5 0.19 4.2E-06 39.1 5.5 35 11-45 87-121 (123)
153 KOG4424|consensus 93.5 0.17 3.7E-06 48.7 6.0 91 210-302 272-369 (623)
154 PF15405 PH_5: Pleckstrin homo 93.5 0.55 1.2E-05 37.2 8.1 36 266-301 97-134 (135)
155 smart00105 ArfGap Putative GTP 93.3 0.024 5.2E-07 43.4 0.1 36 84-123 3-38 (112)
156 PF15405 PH_5: Pleckstrin homo 93.2 0.23 5E-06 39.3 5.5 24 21-44 111-134 (135)
157 cd01255 PH_TIAM TIAM Pleckstri 93.2 1.7 3.7E-05 34.3 10.0 79 224-302 49-154 (160)
158 PF01412 ArfGap: Putative GTPa 93.1 0.018 3.8E-07 44.4 -0.9 38 82-123 11-48 (116)
159 cd01231 PH_Lnk LNK-family Plec 93.1 0.19 4.2E-06 37.1 4.5 34 10-43 72-106 (107)
160 PF15406 PH_6: Pleckstrin homo 92.8 0.17 3.8E-06 37.9 4.0 33 10-42 78-110 (112)
161 KOG0690|consensus 92.8 0.24 5.2E-06 44.9 5.6 38 11-48 78-119 (516)
162 KOG0932|consensus 92.8 0.19 4.1E-06 48.2 5.1 44 5-48 576-620 (774)
163 PLN03119 putative ADP-ribosyla 92.3 0.069 1.5E-06 51.2 1.6 36 84-123 23-58 (648)
164 KOG1737|consensus 92.2 0.081 1.8E-06 53.3 2.1 87 210-301 77-167 (799)
165 PF14593 PH_3: PH domain; PDB: 92.2 0.36 7.8E-06 36.4 5.0 36 12-48 67-102 (104)
166 PLN03131 hypothetical protein; 90.7 0.12 2.6E-06 50.1 1.4 36 84-123 23-58 (705)
167 PF08458 PH_2: Plant pleckstri 90.6 0.91 2E-05 34.4 5.8 38 10-47 68-105 (110)
168 KOG2070|consensus 90.5 0.46 9.9E-06 45.0 4.9 93 208-300 308-404 (661)
169 cd01262 PH_PDK1 3-Phosphoinosi 90.2 0.44 9.6E-06 34.6 3.6 33 12-45 56-88 (89)
170 KOG1729|consensus 90.0 0.056 1.2E-06 48.2 -1.3 41 76-116 12-52 (288)
171 PLN03114 ADP-ribosylation fact 88.6 0.21 4.5E-06 45.4 1.2 36 84-123 22-57 (395)
172 KOG4407|consensus 88.5 0.021 4.5E-07 59.3 -5.7 93 209-301 922-1040(1973)
173 KOG4807|consensus 87.5 0.004 8.8E-08 56.6 -10.2 80 221-302 32-114 (593)
174 KOG0704|consensus 87.2 0.34 7.3E-06 43.8 1.7 39 81-123 16-54 (386)
175 PRK00464 nrdR transcriptional 85.6 0.4 8.6E-06 38.8 1.2 25 86-110 2-38 (154)
176 cd01227 PH_Dbs Dbs (DBL's big 85.6 9.9 0.00021 30.0 9.0 50 250-301 64-114 (133)
177 KOG2059|consensus 85.4 1.6 3.4E-05 43.3 5.2 40 10-49 629-668 (800)
178 KOG0517|consensus 85.0 0.01 2.2E-07 63.3 -10.2 92 211-302 2300-2409(2473)
179 cd01258 PH_syntrophin Syntroph 84.0 2.6 5.7E-05 31.9 4.9 35 9-43 71-107 (108)
180 PF07975 C1_4: TFIIH C1-like d 83.9 0.3 6.4E-06 31.6 -0.2 31 87-117 2-38 (51)
181 KOG2996|consensus 83.7 1.6 3.4E-05 42.4 4.3 90 13-118 477-569 (865)
182 KOG1264|consensus 83.5 1.8 3.9E-05 43.7 4.8 54 250-303 855-911 (1267)
183 cd01256 PH_dynamin Dynamin ple 82.5 3 6.4E-05 30.9 4.5 35 9-43 61-103 (110)
184 KOG0706|consensus 80.5 0.78 1.7E-05 42.9 1.1 37 83-123 22-58 (454)
185 cd01239 PH_PKD Protein kinase 79.9 3.8 8.2E-05 31.3 4.4 35 10-44 63-117 (117)
186 PF15411 PH_10: Pleckstrin hom 79.4 26 0.00056 26.9 10.4 33 266-298 81-116 (116)
187 KOG3523|consensus 77.9 4 8.7E-05 39.9 5.0 34 266-299 553-591 (695)
188 PF09538 FYDLN_acid: Protein o 76.4 1.4 3.1E-05 33.3 1.3 27 84-110 9-36 (108)
189 TIGR02300 FYDLN_acid conserved 75.8 1.6 3.4E-05 33.9 1.4 27 84-110 9-36 (129)
190 TIGR00622 ssl1 transcription f 75.8 2.1 4.6E-05 32.5 2.1 35 83-117 54-98 (112)
191 KOG1451|consensus 75.3 2.5 5.5E-05 41.1 2.9 39 6-44 326-366 (812)
192 KOG2996|consensus 74.3 12 0.00025 36.7 7.0 93 210-302 406-511 (865)
193 KOG0320|consensus 73.8 0.35 7.6E-06 39.6 -2.7 48 84-140 131-178 (187)
194 PRK00420 hypothetical protein; 72.3 2.5 5.5E-05 32.2 1.8 25 85-109 24-49 (112)
195 KOG3576|consensus 72.1 0.82 1.8E-05 38.4 -1.0 32 80-111 113-156 (267)
196 KOG4275|consensus 71.9 0.76 1.6E-05 40.6 -1.3 52 81-140 41-92 (350)
197 KOG3520|consensus 70.6 6.6 0.00014 41.4 4.8 39 13-51 685-727 (1167)
198 PF03604 DNA_RNApol_7kD: DNA d 70.3 3.3 7.2E-05 24.0 1.5 24 86-109 2-26 (32)
199 KOG0993|consensus 70.0 0.24 5.2E-06 45.6 -4.9 64 78-142 462-527 (542)
200 cd01248 PH_PLC Phospholipase C 69.8 12 0.00025 28.5 5.1 33 10-42 77-113 (115)
201 PF14634 zf-RING_5: zinc-RING 69.3 1.2 2.5E-05 27.7 -0.5 33 86-119 1-33 (44)
202 PF08458 PH_2: Plant pleckstri 69.0 13 0.00028 28.2 4.9 37 267-304 69-105 (110)
203 KOG2164|consensus 68.6 1.4 3.1E-05 42.0 -0.3 52 84-141 186-237 (513)
204 smart00154 ZnF_AN1 AN1-like Zi 68.3 3.2 7E-05 25.2 1.3 25 87-113 1-25 (39)
205 KOG0705|consensus 67.3 3.8 8.2E-05 39.8 2.1 32 269-300 446-477 (749)
206 TIGR02605 CxxC_CxxC_SSSS putat 66.0 3 6.5E-05 26.8 0.9 16 86-101 7-22 (52)
207 PF13717 zinc_ribbon_4: zinc-r 65.9 3.9 8.5E-05 24.3 1.3 25 86-110 4-35 (36)
208 PRK00398 rpoP DNA-directed RNA 65.1 4.1 8.9E-05 25.5 1.4 23 86-108 5-29 (46)
209 KOG3723|consensus 65.1 7.4 0.00016 37.9 3.6 42 9-50 800-841 (851)
210 PF00130 C1_1: Phorbol esters/ 62.3 7.4 0.00016 24.9 2.3 36 83-118 10-46 (53)
211 smart00659 RPOLCX RNA polymera 62.2 5.2 0.00011 25.0 1.4 23 86-108 4-27 (44)
212 PF07282 OrfB_Zn_ribbon: Putat 61.3 6.3 0.00014 26.9 1.9 28 83-110 27-56 (69)
213 PF14569 zf-UDP: Zinc-binding 61.2 1.7 3.7E-05 30.5 -1.0 51 80-136 5-58 (80)
214 PF01485 IBR: IBR domain; Int 60.6 6.8 0.00015 25.9 1.9 34 84-117 18-57 (64)
215 KOG3531|consensus 60.0 5.8 0.00013 40.3 2.0 93 210-304 750-846 (1036)
216 PF06017 Myosin_TH1: Myosin ta 60.0 81 0.0018 26.5 8.8 83 207-292 47-136 (199)
217 PF06221 zf-C2HC5: Putative zi 59.4 3.4 7.3E-05 27.4 0.2 13 100-112 18-30 (57)
218 KOG1314|consensus 59.3 3 6.6E-05 38.0 -0.0 37 72-110 74-115 (414)
219 PF15616 TerY-C: TerY-C metal 59.2 6 0.00013 31.0 1.6 39 84-139 77-115 (131)
220 PF14844 PH_BEACH: PH domain a 58.9 54 0.0012 24.3 6.8 53 245-297 52-104 (106)
221 KOG4305|consensus 58.4 14 0.0003 38.8 4.5 37 15-51 656-692 (1029)
222 KOG3518|consensus 57.8 9.5 0.00021 34.6 2.8 41 9-49 393-436 (521)
223 PF12773 DZR: Double zinc ribb 57.7 7.4 0.00016 24.6 1.6 27 83-109 11-38 (50)
224 PRK00432 30S ribosomal protein 57.2 7.1 0.00015 25.1 1.4 27 84-110 20-47 (50)
225 TIGR00100 hypA hydrogenase nic 57.0 5.4 0.00012 30.6 1.0 24 84-107 70-93 (115)
226 PF13445 zf-RING_UBOX: RING-ty 56.1 3.9 8.4E-05 25.4 0.1 30 87-117 1-30 (43)
227 PF13719 zinc_ribbon_5: zinc-r 56.1 6.4 0.00014 23.5 1.0 25 85-109 3-34 (37)
228 COG1996 RPC10 DNA-directed RNA 55.9 6.5 0.00014 25.2 1.1 23 86-108 8-32 (49)
229 cd02340 ZZ_NBR1_like Zinc fing 54.4 6.4 0.00014 24.4 0.9 30 86-117 2-32 (43)
230 PF14445 Prok-RING_2: Prokaryo 54.3 2.4 5.2E-05 27.1 -1.1 32 86-118 9-40 (57)
231 smart00291 ZnF_ZZ Zinc-binding 53.6 8 0.00017 24.0 1.2 29 84-114 4-33 (44)
232 cd02341 ZZ_ZZZ3 Zinc finger, Z 53.4 6.5 0.00014 25.1 0.8 30 86-116 2-34 (48)
233 PF10892 DUF2688: Protein of u 53.1 4.1 9E-05 26.6 -0.2 8 102-109 12-19 (60)
234 PF09723 Zn-ribbon_8: Zinc rib 52.6 7 0.00015 24.0 0.8 15 86-100 7-21 (42)
235 PF03107 C1_2: C1 domain; Int 52.6 12 0.00025 21.1 1.7 29 86-115 2-30 (30)
236 PF02945 Endonuclease_7: Recom 52.4 5.4 0.00012 28.5 0.3 26 84-109 22-50 (81)
237 KOG1315|consensus 52.3 6.2 0.00013 35.7 0.7 31 79-111 104-134 (307)
238 PRK12380 hydrogenase nickel in 52.1 7.2 0.00016 29.8 1.0 24 84-107 70-93 (113)
239 PRK00564 hypA hydrogenase nick 52.0 7 0.00015 30.0 0.9 24 84-107 71-95 (117)
240 PF14803 Nudix_N_2: Nudix N-te 52.0 8.1 0.00018 22.7 1.0 25 111-135 3-28 (34)
241 cd01229 PH_etc2 Epithelial cel 51.9 31 0.00066 26.5 4.3 44 3-46 78-128 (129)
242 PF13639 zf-RING_2: Ring finge 51.4 4.8 0.0001 24.7 -0.1 33 86-119 2-34 (44)
243 KOG3507|consensus 51.3 7.2 0.00016 25.8 0.7 25 85-109 21-46 (62)
244 PF01155 HypA: Hydrogenase exp 51.3 5.2 0.00011 30.5 0.1 25 84-108 70-94 (113)
245 PHA02768 hypothetical protein; 51.1 8.8 0.00019 25.2 1.1 12 86-97 7-18 (55)
246 KOG0818|consensus 50.3 5.3 0.00012 38.1 0.0 37 84-124 8-44 (669)
247 KOG0931|consensus 49.8 16 0.00035 34.6 3.0 49 1-49 475-529 (627)
248 PF00643 zf-B_box: B-box zinc 49.4 7.7 0.00017 23.5 0.6 30 84-117 3-32 (42)
249 smart00834 CxxC_CXXC_SSSS Puta 49.4 9.2 0.0002 22.9 1.0 28 86-116 7-34 (41)
250 PF08271 TF_Zn_Ribbon: TFIIB z 49.2 11 0.00024 23.2 1.3 9 86-94 2-10 (43)
251 PLN02866 phospholipase D 49.2 36 0.00079 36.0 5.7 39 9-47 271-309 (1068)
252 COG1998 RPS31 Ribosomal protei 48.9 9.1 0.0002 24.4 0.9 26 84-109 19-46 (51)
253 KOG0976|consensus 48.7 4.9 0.00011 40.6 -0.5 92 211-302 813-919 (1265)
254 cd02249 ZZ Zinc finger, ZZ typ 48.4 8.2 0.00018 24.2 0.7 29 86-116 2-31 (46)
255 TIGR01623 put_zinc_LRP1 putati 48.2 6.7 0.00015 24.1 0.2 32 87-118 2-33 (43)
256 PF07191 zinc-ribbons_6: zinc- 47.5 12 0.00025 25.9 1.3 24 86-109 3-26 (70)
257 PF04714 BCL_N: BCL7, N-termin 46.0 14 0.0003 23.7 1.4 21 221-241 27-47 (52)
258 PRK03681 hypA hydrogenase nick 45.8 10 0.00022 29.0 1.0 24 84-107 70-94 (114)
259 smart00109 C1 Protein kinase C 45.5 8.6 0.00019 23.8 0.4 34 84-117 11-44 (49)
260 PF15277 Sec3-PIP2_bind: Exocy 45.4 95 0.0021 22.6 6.0 33 12-45 56-88 (91)
261 PF13923 zf-C3HC4_2: Zinc fing 45.2 7.8 0.00017 23.1 0.2 29 87-118 1-29 (39)
262 TIGR02098 MJ0042_CXXC MJ0042 f 45.2 14 0.00031 21.8 1.4 13 86-98 4-16 (38)
263 PF09947 DUF2180: Uncharacteri 45.2 10 0.00023 26.0 0.8 54 87-140 3-67 (68)
264 KOG3799|consensus 44.8 15 0.00032 28.8 1.7 54 84-141 65-119 (169)
265 PF06750 DiS_P_DiS: Bacterial 44.7 13 0.00029 27.2 1.4 26 84-109 33-67 (92)
266 COG2051 RPS27A Ribosomal prote 44.7 13 0.00028 25.4 1.2 28 86-113 21-51 (67)
267 KOG1814|consensus 44.5 25 0.00053 33.0 3.3 42 77-119 362-405 (445)
268 PRK03824 hypA hydrogenase nick 44.4 11 0.00025 29.7 1.1 12 86-97 72-83 (135)
269 KOG0317|consensus 44.3 7.6 0.00016 34.5 0.0 31 84-118 239-269 (293)
270 KOG1170|consensus 43.5 16 0.00034 37.2 2.1 95 7-118 56-154 (1099)
271 PF15408 PH_7: Pleckstrin homo 43.0 17 0.00036 26.2 1.6 30 14-43 65-95 (104)
272 cd00029 C1 Protein kinase C co 42.7 11 0.00025 23.4 0.7 34 84-117 11-45 (50)
273 PF01529 zf-DHHC: DHHC palmito 42.6 13 0.00029 30.1 1.3 28 81-110 45-72 (174)
274 PF10367 Vps39_2: Vacuolar sor 42.1 19 0.00042 26.5 2.0 31 84-116 78-108 (109)
275 PLN03208 E3 ubiquitin-protein 41.4 6 0.00013 33.2 -1.0 58 80-141 14-80 (193)
276 PF10571 UPF0547: Uncharacteri 41.0 18 0.00038 19.8 1.2 6 87-92 3-8 (26)
277 smart00647 IBR In Between Ring 40.8 27 0.00058 22.9 2.4 32 86-117 20-57 (64)
278 KOG0978|consensus 40.6 3.6 7.8E-05 41.2 -2.8 47 83-139 642-688 (698)
279 TIGR00570 cdk7 CDK-activating 39.6 6.3 0.00014 35.6 -1.2 49 85-141 4-55 (309)
280 PF02148 zf-UBP: Zn-finger in 38.9 17 0.00036 24.4 1.1 27 87-116 1-27 (63)
281 KOG0689|consensus 38.5 41 0.00089 32.2 3.9 39 9-47 320-362 (448)
282 COG1997 RPL43A Ribosomal prote 38.4 19 0.00042 26.0 1.3 29 84-113 35-66 (89)
283 KOG4739|consensus 38.0 13 0.00029 32.1 0.6 45 86-141 5-49 (233)
284 PRK05580 primosome assembly pr 37.9 12 0.00027 37.9 0.4 15 102-116 383-398 (679)
285 PF02150 RNA_POL_M_15KD: RNA p 37.4 20 0.00043 21.1 1.1 8 102-109 22-29 (35)
286 PF15470 DUF4637: Domain of un 36.7 16 0.00035 28.9 0.8 23 99-121 130-152 (173)
287 PF00569 ZZ: Zinc finger, ZZ t 36.7 17 0.00037 22.8 0.8 23 84-107 4-26 (46)
288 PLN02638 cellulose synthase A 36.6 20 0.00043 37.9 1.7 43 79-121 12-57 (1079)
289 cd02342 ZZ_UBA_plant Zinc fing 36.4 17 0.00037 22.6 0.7 22 86-108 2-23 (43)
290 PF05191 ADK_lid: Adenylate ki 36.2 7 0.00015 23.3 -1.0 12 126-137 18-29 (36)
291 COG1198 PriA Primosomal protei 36.1 42 0.00092 34.3 3.8 34 85-118 445-485 (730)
292 cd01234 PH_CADPS CADPS (Ca2+-d 35.9 56 0.0012 24.6 3.5 35 12-46 77-111 (117)
293 PF07503 zf-HYPF: HypF finger; 35.8 8.2 0.00018 22.8 -0.7 16 87-102 2-18 (35)
294 KOG1311|consensus 35.5 17 0.00037 32.6 0.9 28 83-112 112-139 (299)
295 PRK14559 putative protein seri 35.0 22 0.00047 35.8 1.6 30 84-117 15-50 (645)
296 PF09332 Mcm10: Mcm10 replicat 34.3 17 0.00036 33.6 0.6 9 101-109 286-294 (344)
297 TIGR01384 TFS_arch transcripti 33.9 22 0.00048 26.4 1.2 24 86-109 2-25 (104)
298 KOG3551|consensus 33.5 71 0.0015 29.9 4.4 56 248-303 215-272 (506)
299 PRK04023 DNA polymerase II lar 33.3 29 0.00063 36.4 2.2 47 81-140 623-674 (1121)
300 COG1439 Predicted nucleic acid 33.2 19 0.00042 29.7 0.8 21 85-107 140-160 (177)
301 COG0675 Transposase and inacti 33.0 26 0.00057 31.5 1.8 26 82-110 307-332 (364)
302 COG4855 Uncharacterized protei 32.9 9.1 0.0002 26.0 -1.0 55 86-140 9-74 (76)
303 COG5273 Uncharacterized protei 32.9 19 0.00042 32.7 0.8 29 81-111 106-134 (309)
304 cd01240 PH_beta-ARK Beta adren 32.9 1.8E+02 0.0038 22.2 5.7 40 10-49 62-102 (116)
305 PF15277 Sec3-PIP2_bind: Exocy 32.7 1.9E+02 0.0042 20.9 6.7 51 249-301 37-87 (91)
306 PTZ00255 60S ribosomal protein 32.3 29 0.00062 25.3 1.4 32 84-115 36-69 (90)
307 PF01780 Ribosomal_L37ae: Ribo 32.1 24 0.00052 25.8 1.0 31 84-114 35-67 (90)
308 cd02339 ZZ_Mind_bomb Zinc fing 32.1 24 0.00052 22.1 0.9 30 86-116 2-32 (45)
309 PRK12496 hypothetical protein; 31.9 26 0.00055 28.7 1.3 10 86-95 129-138 (164)
310 KOG3520|consensus 31.8 41 0.0009 35.8 3.0 34 270-303 687-722 (1167)
311 COG5574 PEX10 RING-finger-cont 31.8 14 0.00031 32.4 -0.2 30 84-117 215-244 (271)
312 TIGR00311 aIF-2beta translatio 31.7 24 0.00051 27.9 1.0 26 84-109 97-127 (133)
313 PRK11595 DNA utilization prote 31.5 13 0.00028 32.0 -0.5 31 85-117 21-57 (227)
314 PF10170 C6_DPF: Cysteine-rich 31.2 29 0.00063 25.6 1.4 35 99-142 48-84 (97)
315 cd00162 RING RING-finger (Real 30.9 16 0.00034 21.6 -0.1 29 87-118 2-30 (45)
316 PF00628 PHD: PHD-finger; Int 30.8 35 0.00077 21.4 1.6 48 87-136 2-49 (51)
317 KOG4095|consensus 30.8 22 0.00048 28.3 0.7 21 221-241 28-48 (165)
318 TIGR00280 L37a ribosomal prote 30.6 31 0.00066 25.2 1.4 32 84-115 35-68 (91)
319 PRK03976 rpl37ae 50S ribosomal 30.6 31 0.00067 25.2 1.4 33 84-116 36-70 (90)
320 KOG3521|consensus 30.5 75 0.0016 31.8 4.3 38 12-49 487-530 (846)
321 KOG3549|consensus 30.2 76 0.0016 29.2 4.0 49 10-58 223-273 (505)
322 PF13248 zf-ribbon_3: zinc-rib 30.2 27 0.00058 18.9 0.8 7 86-92 4-10 (26)
323 PF12172 DUF35_N: Rubredoxin-l 29.9 28 0.0006 20.5 0.9 7 86-92 13-19 (37)
324 PF01667 Ribosomal_S27e: Ribos 29.9 31 0.00068 22.7 1.2 27 86-112 9-38 (55)
325 PRK00415 rps27e 30S ribosomal 29.9 28 0.0006 23.2 1.0 27 86-112 13-42 (59)
326 COG2888 Predicted Zn-ribbon RN 29.8 36 0.00078 22.7 1.4 33 84-116 9-43 (61)
327 smart00290 ZnF_UBP Ubiquitin C 29.8 32 0.0007 21.5 1.3 25 87-115 2-26 (50)
328 PF07649 C1_3: C1-like domain; 29.4 13 0.00029 20.8 -0.5 28 86-114 2-29 (30)
329 KOG4047|consensus 29.2 24 0.00053 33.4 0.8 88 210-300 8-115 (429)
330 PF14446 Prok-RING_1: Prokaryo 29.0 31 0.00067 22.6 1.0 27 84-110 5-31 (54)
331 KOG1356|consensus 29.0 28 0.0006 35.6 1.2 37 81-119 226-262 (889)
332 COG5151 SSL1 RNA polymerase II 28.8 23 0.0005 31.8 0.6 37 80-116 358-404 (421)
333 smart00661 RPOL9 RNA polymeras 28.6 39 0.00085 21.3 1.5 6 87-92 3-8 (52)
334 PRK14714 DNA polymerase II lar 28.6 39 0.00085 36.4 2.3 50 84-141 667-721 (1337)
335 TIGR00595 priA primosomal prot 28.6 21 0.00046 34.8 0.3 16 282-297 470-485 (505)
336 PLN00188 enhanced disease resi 28.5 82 0.0018 32.0 4.3 29 20-48 84-112 (719)
337 PF09845 DUF2072: Zn-ribbon co 28.4 26 0.00056 27.4 0.7 10 86-95 3-12 (131)
338 PRK04136 rpl40e 50S ribosomal 28.4 31 0.00067 21.9 0.9 22 85-108 15-36 (48)
339 TIGR01031 rpmF_bact ribosomal 28.0 37 0.0008 22.3 1.3 21 83-107 25-46 (55)
340 PRK14873 primosome assembly pr 27.6 25 0.00055 35.5 0.7 34 85-118 393-432 (665)
341 PF14784 ECIST_Cterm: C-termin 27.6 1.3E+02 0.0028 23.5 4.4 18 283-300 94-111 (126)
342 PF01907 Ribosomal_L37e: Ribos 27.5 34 0.00073 22.5 1.0 8 102-109 17-24 (55)
343 PLN02400 cellulose synthase 27.4 42 0.00091 35.6 2.2 44 79-122 31-77 (1085)
344 PF09297 zf-NADH-PPase: NADH p 27.3 28 0.00061 19.8 0.6 23 110-135 5-27 (32)
345 PF09889 DUF2116: Uncharacteri 27.0 29 0.00062 23.2 0.6 28 100-142 3-31 (59)
346 PF15411 PH_10: Pleckstrin hom 26.8 59 0.0013 24.9 2.4 31 11-41 82-116 (116)
347 PF09862 DUF2089: Protein of u 26.7 36 0.00079 26.0 1.2 29 87-117 1-29 (113)
348 PRK03988 translation initiatio 26.5 33 0.00071 27.2 1.0 26 84-109 102-132 (138)
349 KOG3521|consensus 26.5 64 0.0014 32.3 3.1 35 268-302 487-526 (846)
350 PTZ00083 40S ribosomal protein 26.3 40 0.00086 24.2 1.3 27 86-112 37-66 (85)
351 PF12647 RNHCP: RNHCP domain; 26.3 37 0.00079 24.9 1.1 22 86-107 6-31 (92)
352 smart00336 BBOX B-Box-type zin 26.2 51 0.0011 19.5 1.7 28 85-117 4-32 (42)
353 PLN02195 cellulose synthase A 26.1 33 0.00072 35.9 1.2 53 82-140 4-59 (977)
354 PHA02565 49 recombination endo 26.0 37 0.00081 27.4 1.3 20 85-104 21-43 (157)
355 PF11781 RRN7: RNA polymerase 26.0 35 0.00075 20.3 0.8 24 86-109 10-34 (36)
356 PF00097 zf-C3HC4: Zinc finger 26.0 26 0.00056 20.8 0.3 30 87-119 1-30 (41)
357 COG2126 RPL37A Ribosomal prote 25.8 27 0.00059 23.1 0.4 7 103-109 19-25 (61)
358 smart00653 eIF2B_5 domain pres 25.7 34 0.00074 26.0 0.9 25 84-108 80-109 (110)
359 PLN00209 ribosomal protein S27 25.4 41 0.0009 24.2 1.2 27 86-112 38-67 (86)
360 KOG3362|consensus 25.3 26 0.00056 27.8 0.2 29 84-117 118-147 (156)
361 cd00021 BBOX B-Box-type zinc f 25.3 26 0.00056 20.5 0.2 17 101-117 13-29 (39)
362 KOG4471|consensus 24.7 2E+02 0.0042 28.7 5.9 72 231-302 61-136 (717)
363 PRK14892 putative transcriptio 24.7 42 0.00092 25.0 1.2 32 84-118 21-52 (99)
364 PF04438 zf-HIT: HIT zinc fing 24.6 45 0.00097 18.9 1.1 22 86-112 4-25 (30)
365 PF07831 PYNP_C: Pyrimidine nu 24.3 69 0.0015 22.4 2.2 30 276-305 46-75 (75)
366 PF08671 SinI: Anti-repressor 24.2 82 0.0018 17.9 2.1 13 35-47 3-15 (30)
367 cd00350 rubredoxin_like Rubred 24.1 49 0.0011 19.0 1.2 7 103-109 4-10 (33)
368 PLN02436 cellulose synthase A 24.0 45 0.00098 35.4 1.7 43 79-121 31-76 (1094)
369 TIGR00595 priA primosomal prot 23.9 56 0.0012 31.9 2.3 33 86-118 224-263 (505)
370 COG1198 PriA Primosomal protei 23.9 33 0.00071 35.0 0.7 16 102-117 437-453 (730)
371 PF14353 CpXC: CpXC protein 23.8 42 0.00092 25.9 1.2 10 86-95 3-12 (128)
372 COG0498 ThrC Threonine synthas 23.7 30 0.00066 32.7 0.4 26 84-109 5-30 (411)
373 PF08274 PhnA_Zn_Ribbon: PhnA 23.7 49 0.0011 18.8 1.1 24 85-115 3-26 (30)
374 KOG1313|consensus 23.7 25 0.00053 31.2 -0.2 34 83-118 101-143 (309)
375 COG0375 HybF Zn finger protein 23.7 36 0.00078 26.1 0.7 24 84-107 70-93 (115)
376 PRK14873 primosome assembly pr 23.5 49 0.0011 33.6 1.8 9 130-138 423-431 (665)
377 cd02345 ZZ_dah Zinc finger, ZZ 23.2 39 0.00085 21.5 0.7 21 86-108 2-23 (49)
378 PF07754 DUF1610: Domain of un 22.8 59 0.0013 17.5 1.2 8 101-108 17-24 (24)
379 KOG3518|consensus 22.8 76 0.0017 29.0 2.7 34 268-301 396-431 (521)
380 KOG3523|consensus 22.7 92 0.002 30.9 3.4 33 10-42 553-591 (695)
381 KOG1829|consensus 22.7 58 0.0013 32.2 2.1 65 82-146 338-410 (580)
382 PRK14890 putative Zn-ribbon RN 22.5 62 0.0013 21.6 1.6 32 84-115 7-40 (59)
383 PRK14559 putative protein seri 22.3 63 0.0014 32.6 2.3 47 86-141 3-53 (645)
384 PF01927 Mut7-C: Mut7-C RNAse 22.2 59 0.0013 25.9 1.8 14 82-95 89-102 (147)
385 PF13240 zinc_ribbon_2: zinc-r 22.1 34 0.00074 18.0 0.3 6 87-92 2-7 (23)
386 cd02337 ZZ_CBP Zinc finger, ZZ 22.0 37 0.00079 20.8 0.4 28 86-116 2-30 (41)
387 PF12760 Zn_Tnp_IS1595: Transp 21.9 63 0.0014 20.0 1.5 24 85-108 19-45 (46)
388 PHA00457 inhibitor of host bac 21.7 1.9E+02 0.004 19.3 3.6 31 9-39 12-44 (63)
389 COG3364 Zn-ribbon containing p 21.4 41 0.00088 25.1 0.6 10 86-95 4-13 (112)
390 KOG1818|consensus 21.4 24 0.00052 35.1 -0.8 34 85-118 55-89 (634)
391 PHA02942 putative transposase; 21.2 66 0.0014 30.2 2.1 27 83-109 324-351 (383)
392 KOG0823|consensus 21.2 17 0.00037 31.3 -1.6 53 81-141 44-96 (230)
393 PRK12336 translation initiatio 21.0 47 0.001 28.1 1.0 26 84-109 98-128 (201)
394 PF10013 DUF2256: Uncharacteri 20.7 50 0.0011 20.4 0.8 13 84-96 8-20 (42)
395 PF02132 RecR: RecR protein; 20.5 21 0.00047 21.7 -0.9 17 100-116 17-37 (41)
396 cd02335 ZZ_ADA2 Zinc finger, Z 20.4 52 0.0011 20.8 0.9 30 86-116 2-32 (49)
397 PF13913 zf-C2HC_2: zinc-finge 20.2 22 0.00048 19.1 -0.7 12 86-97 4-15 (25)
398 COG1552 RPL40A Ribosomal prote 20.2 27 0.00059 22.2 -0.5 21 85-107 15-35 (50)
399 COG1379 PHP family phosphoeste 20.1 33 0.00072 31.2 -0.1 26 84-109 246-274 (403)
No 1
>KOG4424|consensus
Probab=99.97 E-value=2e-31 Score=245.55 Aligned_cols=255 Identities=30% Similarity=0.487 Sum_probs=205.8
Q ss_pred CeeecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhccccccccccccc------CCCcccCcCCC
Q psy2207 1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQ------SSIPELNLGKV 74 (305)
Q Consensus 1 m~v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 74 (305)
|+|+..++.++++.|.|.+++|+..|+|.|++|+++|+++|+++|+.+.+...+|........ +......++..
T Consensus 325 ~~v~~~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~eTfr~~s~t~~~~~d~~s~~~~~~l~~r 404 (623)
T KOG4424|consen 325 MQVQEDDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCRETFRKDSRTPISDNDMKSFSSDYVLGKR 404 (623)
T ss_pred chhcccccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhccccccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999876542211 22334444443
Q ss_pred ---CCeeeecCCCccccccccccc-ccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhccCCCcchh
Q psy2207 75 ---APLWIPDSRVSMCQRCTSVFT-VTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNM 150 (305)
Q Consensus 75 ---~p~w~~d~~~~~C~~C~~~f~-~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~~~~~~~~~ 150 (305)
+|.| +.++++|+.|..+|+ .+.|||||+.||.++|+.|+.+...+.+++++..|||..||....+....+
T Consensus 405 ~~~~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~s~ssrv~~~~~~~~~~a~~s~---- 478 (623)
T KOG4424|consen 405 KRKAPRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDNSRSSRVCMDRYLTPSGAPGSP---- 478 (623)
T ss_pred cccCccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcccccchhhhhhhhccCCCCCCCCc----
Confidence 6777 888999999999998 688999999999999999999999999999999999999988665431111
Q ss_pred hhhhhhccccccccccccceeeecCCccccCCCCcccCCCcccccccccccccccCCCCCceeeeeeecc--CCCceEEE
Q psy2207 151 FERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKS--GRNWKRYW 228 (305)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~--~~~wkrrw 228 (305)
+ ++. .+...+..+...++..++++|.+.. ++.|...|
T Consensus 479 ----------------------------------~--~rr-----~~~l~~~~a~~s~~~~~~s~l~~~~~~~~~g~~a~ 517 (623)
T KOG4424|consen 479 ----------------------------------P--KRR-----QSILEIELATVSKENVICSHLKYMEAAGKTGILAW 517 (623)
T ss_pred ----------------------------------h--hcc-----cccccccccccCCCceehhhHHHHhhcCccceeee
Confidence 0 111 2334455555556667888776655 78999999
Q ss_pred EEEE---CCEEEEEccCccCccceEEEecCeEEEEcccc--CCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 229 FVLK---DQVMYKYKASEDIKALLSIPVLGYELEALNEQ--DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 229 ~vL~---~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~--~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
+++. +.++|.|.+++|..+...|||.|+.|.+++.. .+..++|.++ .....|+|.|+|++..++|++.|-.|+.
T Consensus 518 ~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~-~s~~~~~~~a~~~q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 518 SVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLV-QSHLSWHLAADDEQLQQRWLEVLLLAVS 596 (623)
T ss_pred eeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhhhh-hhcceeeeccCCHHHHHHHHHHHHhhhc
Confidence 9984 57999999999999999999999999854422 2344778876 4555799999999999999999988763
No 2
>KOG1729|consensus
Probab=99.94 E-value=3.2e-27 Score=206.98 Aligned_cols=187 Identities=27% Similarity=0.473 Sum_probs=144.8
Q ss_pred CCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCc
Q psy2207 6 PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVS 85 (305)
Q Consensus 6 ~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~ 85 (305)
.++..+.+..+|.+..++|.+.|.+..||.+|+..|.+++.+..+... +....+.+..+++|+||++++
T Consensus 101 ~~~~~~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~~~-----------~~~~~~~~~~~~~W~PD~ea~ 169 (288)
T KOG1729|consen 101 SDNERVRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSKNE-----------EDGKSPSNNSAAVWLPDSEAT 169 (288)
T ss_pred ccccccccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhh-----------hccCCCCCCcCCcccCcccce
Confidence 367788889999999999999999999999999999999988776521 133446678899999999999
Q ss_pred ccccccc-cccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhccCCCcchhhhhhhhcccccccc
Q psy2207 86 MCQRCTS-VFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNH 164 (305)
Q Consensus 86 ~C~~C~~-~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (305)
+||.|+. .|+++.||||||+||.+||.-|+.++..|++...++.|||+.||..+....... .+ .+
T Consensus 170 ~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~~~~~~-~~-------~~------ 235 (288)
T KOG1729|consen 170 ECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEKGARGD-RE-------DS------ 235 (288)
T ss_pred ecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhcccccc-hh-------hc------
Confidence 9999999 999999999999999999999999999999999999999999999997511111 00 00
Q ss_pred ccccceeeecCCccccCCCCcccCCCcccccccccccccccCCCCCceeeeeeeccCCCceEEEEEEECCEEEEEcc
Q psy2207 165 QVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKA 241 (305)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~ 241 (305)
.+. ...+. .+......+...+....+|+|++.. +.|++.||...+.+|++|.+
T Consensus 236 ---------~~~---------~~~~~-----~~~~~~~~~~~~~~~~~s~~l~~~s-~~~~~~~~~~~~~~l~~~~a 288 (288)
T KOG1729|consen 236 ---------LPV---------FHGKC-----YPNWLTTGAASTEDDADSGHLSRKS-RTVREFEFFHDGVVLGTVPA 288 (288)
T ss_pred ---------ccc---------ccccc-----cccccccccccccccccCccccccc-cccccccccccCeeEeeccC
Confidence 000 00111 2222233334445557888887664 38899999999999998863
No 3
>KOG1117|consensus
Probab=99.87 E-value=3.1e-22 Score=191.17 Aligned_cols=265 Identities=16% Similarity=0.213 Sum_probs=184.9
Q ss_pred ceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCcccccccc
Q psy2207 13 NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTS 92 (305)
Q Consensus 13 ~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C~~ 92 (305)
..|++.||.|+|.|+|+++.||+.|+++.|.+|++.....+ .+.-+|... .+..|++|+.
T Consensus 247 ~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd~e-------------------vaeriW~ne-~nr~cadC~s 306 (1186)
T KOG1117|consen 247 RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSDYE-------------------VAERIWLNE-ENRECADCGS 306 (1186)
T ss_pred ceeccCCceeeeeeeeccchhhhhhhhccCcccccccChHH-------------------HHHHHHhcc-ccccccccCC
Confidence 79999999999999999999999999999999988654321 334578865 4679999999
Q ss_pred cccccccccccccccceeccCccCCeecccCCCC----------------------------------------------
Q psy2207 93 VFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKF---------------------------------------------- 126 (305)
Q Consensus 93 ~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~---------------------------------------------- 126 (305)
+=+.|...+.| .|||+.|.++|+.||+..+
T Consensus 307 srPdwasiNL~----vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~ds 382 (1186)
T KOG1117|consen 307 SRPDWASINLC----VVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPDS 382 (1186)
T ss_pred CCCcccccccc----eEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCCC
Confidence 77776666555 9999999999999976211
Q ss_pred -ccccc----------cHhhHHHHHhccCCCcchhhhhhhhccccccccccccc-eeeecCCccccCCCCcccCC-----
Q psy2207 127 -RNFRV----------CEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNM-MDIIRSNFKEMGTAGRRKPS----- 189 (305)
Q Consensus 127 -~~~rv----------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----- 189 (305)
..-|- |..=+..+....++...++|..+-.+..++.......+ -++.+.+.+..+.|..-.++
T Consensus 383 sp~~r~~fi~~Kykeg~fRk~~~~~~~~sel~kalcaaV~~pdl~etma~l~sga~v~~f~gd~~~~tp~~~a~~aGqsl 462 (1186)
T KOG1117|consen 383 SPSTRRQFIKEKYKEGKFRKEHPVEICSSELPKALCAAVNVPDLLETMALLFSGADVMCFTGDPVHSTPYLLAKKAGQSL 462 (1186)
T ss_pred CcchhhhHHHHHhhccccccccccccccccCChhheeeeeCCchhhHHHHhhccccceeecCCCCCCCCcchhhccccch
Confidence 01111 22222333344555566778888778877777766665 34456665555554321111
Q ss_pred -Cccccc-----cc--cccccc-ccCCCCCceeeeeeecc------------CCCceEEEEEEECCEEEEEccCccCccc
Q psy2207 190 -KKYRKY-----VP--QRLIEV-TANDSGSQHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASEDIKAL 248 (305)
Q Consensus 190 -~~~~~~-----~~--~~~~~~-~~~~~~~~~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~d~~p~ 248 (305)
.+.--. .| ...+++ ....+...++|+||... .....++||||.|+.|+||.++....|.
T Consensus 463 qmefl~~n~~s~~p~~ds~kel~~~~s~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~ 542 (1186)
T KOG1117|consen 463 QMEFLYHNKFSDFPQHDSHKELSQEYSQSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN 542 (1186)
T ss_pred hheeeeccccccCCCccccchhhhhccccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC
Confidence 000000 01 011111 11223456789999765 3357899999999999999999999999
Q ss_pred eEEEecCeEE--EEcccc---CCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 249 LSIPVLGYEL--EALNEQ---DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 249 ~~i~L~~~~v--~~~~~~---~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
+.|.+..... +..++. .+..|.|+|+..+++.|.|.+++.+++..|..+|.++
T Consensus 543 ~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 543 GLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred ceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHh
Confidence 9999965333 333332 3667999999999999999999999999999999765
No 4
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.82 E-value=1e-19 Score=136.64 Aligned_cols=89 Identities=33% Similarity=0.653 Sum_probs=79.6
Q ss_pred eeeeeeecc--CC----CceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207 212 HSGWLHKKS--GR----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA 285 (305)
Q Consensus 212 ~~G~L~~~~--~~----~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a 285 (305)
++|||++++ .+ .|++|||||.++.|+||+++.+..|.+.|+|.++.|....+. .++++|+|.+++.++|+|+|
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~-~k~~~F~I~~~~~~~~~f~a 80 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEV-KKKYAFKVCHPVYKSFYFAA 80 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhc-CCceEEEECCCCCcEEEEEe
Confidence 689999987 34 899999999999999999999999999999999988766443 47799999987768899999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2207 286 DNEQSYERWMKAMREA 301 (305)
Q Consensus 286 ~s~e~~~~Wi~al~~a 301 (305)
+|++++++||.+|+.|
T Consensus 81 ~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 81 ETLDDLSQWVNHLITA 96 (96)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999876
No 5
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.80 E-value=4e-19 Score=132.86 Aligned_cols=87 Identities=25% Similarity=0.474 Sum_probs=74.7
Q ss_pred eeeeeeecc----CCCceEEEEEEEC--CEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207 212 HSGWLHKKS----GRNWKRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA 285 (305)
Q Consensus 212 ~~G~L~~~~----~~~wkrrw~vL~~--~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a 285 (305)
++|||++++ .+.|++|||||++ ..|+||+++.+..|.|.|+|.++.+...+.. .++.|.|.+ +.++|+|.|
T Consensus 1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~--~~~~F~i~t-~~r~y~l~A 77 (95)
T cd01265 1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPRE--EKGRFEIHS-NNEVIALKA 77 (95)
T ss_pred CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCC--CCCEEEEEc-CCcEEEEEC
Confidence 479999986 4689999999974 5899999999999999999998777654332 367999985 567899999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2207 286 DNEQSYERWMKAMREA 301 (305)
Q Consensus 286 ~s~e~~~~Wi~al~~a 301 (305)
+|++++++||+||+.+
T Consensus 78 ~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 78 SSDKQMNYWLQALQSK 93 (95)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999876
No 6
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.79 E-value=1.7e-18 Score=130.79 Aligned_cols=91 Identities=16% Similarity=0.275 Sum_probs=78.9
Q ss_pred Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc---CCcceeEEEEeCCceeEEEE
Q psy2207 210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQGQDPLVFG 284 (305)
Q Consensus 210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~---~~~~~~F~l~~~~~~~~~f~ 284 (305)
++++|||.+++ .+.|++|||||+++.|+||+++.+..|.+.|+|.++.|...++. .+++++|.|.. +.++|+|+
T Consensus 2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t-~~rt~~~~ 80 (100)
T cd01233 2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCT-KHRGYLFQ 80 (100)
T ss_pred cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEEC-CCCEEEEE
Confidence 35889999998 78899999999999999999999999999999998888765433 13578999975 56789999
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy2207 285 ADNEQSYERWMKAMREA 301 (305)
Q Consensus 285 a~s~e~~~~Wi~al~~a 301 (305)
|+|++++++||++|+..
T Consensus 81 A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 81 ALSDKEMIDWLYALNPL 97 (100)
T ss_pred cCCHHHHHHHHHHhhhh
Confidence 99999999999999654
No 7
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.78 E-value=2.8e-18 Score=130.23 Aligned_cols=91 Identities=24% Similarity=0.451 Sum_probs=74.5
Q ss_pred eeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEec----CeEEEEc--cc-cCCcceeEEEEeCCceeE
Q psy2207 212 HSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVL----GYELEAL--NE-QDNFKYVFQLKHQGQDPL 281 (305)
Q Consensus 212 ~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~----~~~v~~~--~~-~~~~~~~F~l~~~~~~~~ 281 (305)
++|||.|++ .+.|++|||||++..|+||+++.+..|.|.|+|. ++.|... +. .....++|.|.++ +++|
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-~Rty 79 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-ERKF 79 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-CeEE
Confidence 479999998 3789999999999999999999999999999995 3455421 11 1223359999865 6789
Q ss_pred EEEcCCHHHHHHHHHHHHHHHc
Q psy2207 282 VFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 282 ~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
+|.|+|++++++||+||+.+..
T Consensus 80 ~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 80 LFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEECCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 8
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.76 E-value=8.8e-18 Score=124.37 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=74.4
Q ss_pred eeeeeeecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN 287 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s 287 (305)
++|||.|.+ .+.|++|||||+++.|.||+++.+ ..|.|.|+|.++.+...+ ..++.|+|.....++|+|.|+|
T Consensus 1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~---~~~~~F~i~~~~~r~~~L~A~s 77 (91)
T cd01247 1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHE---FDENRFDISVNENVVWYLRAEN 77 (91)
T ss_pred CceEEEEeccccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCC---CCCCEEEEEeCCCeEEEEEeCC
Confidence 479999998 889999999999999999999776 457999999988776542 2357999976666899999999
Q ss_pred HHHHHHHHHHHHH
Q psy2207 288 EQSYERWMKAMRE 300 (305)
Q Consensus 288 ~e~~~~Wi~al~~ 300 (305)
++++++||+||+.
T Consensus 78 ~~e~~~Wi~al~~ 90 (91)
T cd01247 78 SQSRLLWMDSVVR 90 (91)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999975
No 9
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.76 E-value=2.1e-19 Score=126.44 Aligned_cols=65 Identities=46% Similarity=0.979 Sum_probs=48.1
Q ss_pred CeeeecCCCcccccccccccccccccccccccceeccCccCCeeccc---CCCCccccccHhhHHHHH
Q psy2207 76 PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLE---YKKFRNFRVCEECYHYLV 140 (305)
Q Consensus 76 p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~---~~~~~~~rvC~~C~~~~~ 140 (305)
|.|+||+++..|+.|+.+|++++||||||.||.+||..|+.++..++ .....++|||+.|+..+.
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 78999999999999999999999999999999999999999998876 456889999999999875
No 10
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.75 E-value=1.7e-17 Score=130.60 Aligned_cols=91 Identities=23% Similarity=0.596 Sum_probs=79.9
Q ss_pred eeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCc-----------
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ----------- 278 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~----------- 278 (305)
..|||++++ .+.|++|||||.++.|+||+++.+..|.+.|+|.++.|...+. ..++++|+|..+..
T Consensus 2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~-~~~~~~F~i~~~~~~~~i~~~~~~~ 80 (125)
T cd01252 2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVED-PSKPFCFELFSPSDKQQIKACKTES 80 (125)
T ss_pred cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEccc-CCCCeeEEEECCccccccccccccc
Confidence 579999998 7899999999999999999999999999999999988876644 35678999987554
Q ss_pred ---------eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 279 ---------DPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 279 ---------~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
+.|+|+|+|++++++||+||+.++.
T Consensus 81 ~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 81 DGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred cccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 6789999999999999999998764
No 11
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.75 E-value=1.4e-17 Score=124.43 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=74.8
Q ss_pred ceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccc-eEEEecCeEEEEccccC----CcceeEEEEeCCcee
Q psy2207 211 QHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKAL-LSIPVLGYELEALNEQD----NFKYVFQLKHQGQDP 280 (305)
Q Consensus 211 ~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~-~~i~L~~~~v~~~~~~~----~~~~~F~l~~~~~~~ 280 (305)
+++|||.+++ .+.|++|||+|+++.|+||+......|. +.|+|..+..+...... ..+++|+|.+++ ++
T Consensus 1 ~~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt 79 (101)
T cd01264 1 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KT 79 (101)
T ss_pred CcceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCC-ce
Confidence 3789998887 4789999999999999999988666666 99999887765443321 336999998655 78
Q ss_pred EEEEcCCHHHHHHHHHHHHHHH
Q psy2207 281 LVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 281 ~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
|+|.|+|+++++.||++|+.|.
T Consensus 80 ~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 80 YILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEEeCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999873
No 12
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.73 E-value=3.7e-17 Score=124.69 Aligned_cols=89 Identities=27% Similarity=0.346 Sum_probs=72.2
Q ss_pred ceeeeeeecc-------CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEc-cccC------CcceeEEEE
Q psy2207 211 QHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEAL-NEQD------NFKYVFQLK 274 (305)
Q Consensus 211 ~~~G~L~~~~-------~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~-~~~~------~~~~~F~l~ 274 (305)
+.+|||++++ .+.|++|||||+++.|+||+++.+ ..|.|.|+|.++.+... .+.. ...++|+|.
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~ 80 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV 80 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence 3689999986 348999999999999999999876 47999999988765532 2211 246899999
Q ss_pred eCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207 275 HQGQDPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 275 ~~~~~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
+++ ++|++.|+|++++++||+||++
T Consensus 81 t~~-r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 81 HDE-GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred eCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence 755 5688999999999999999985
No 13
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.72 E-value=7.6e-17 Score=122.08 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=73.3
Q ss_pred eeeeeeecc--CCCceEEEEEEE--CCEEEEEccCccCccceEEEecCeEEEEc-ccc------CCcceeEEEEeCCcee
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEAL-NEQ------DNFKYVFQLKHQGQDP 280 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~~d~~p~~~i~L~~~~v~~~-~~~------~~~~~~F~l~~~~~~~ 280 (305)
.+|||.|++ .+.|++|||||. +..|+||+++.+..|.|.|+|..+..... ... ....+.|.|. +..++
T Consensus 1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~-t~~r~ 79 (101)
T cd01235 1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK-TSKRT 79 (101)
T ss_pred CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEE-eCCce
Confidence 479999998 789999999998 45999999999999999999987654432 111 1244678886 56678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHH
Q psy2207 281 LVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 281 ~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
|+|.|++++++++||.||+.++
T Consensus 80 ~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 80 YNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEECCCHHHHHHHHHHHHhhC
Confidence 9999999999999999998763
No 14
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.72 E-value=8.5e-17 Score=120.81 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=74.3
Q ss_pred CceeeeeeeccCCCceEEEEEEECC------EEEEEccCcc-----CccceEEEecCeEEEEccccCCcceeEEEEeCCc
Q psy2207 210 SQHSGWLHKKSGRNWKRYWFVLKDQ------VMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ 278 (305)
Q Consensus 210 ~~~~G~L~~~~~~~wkrrw~vL~~~------~L~~y~~~~d-----~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~ 278 (305)
+.++|||.++ +.|+||||||++. .|.||+++.. ..|.+.|+|.+|..+....+...+|+|.|.++.
T Consensus 2 v~k~GyL~K~--K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d- 78 (101)
T cd01257 2 VRKSGYLRKQ--KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRD- 78 (101)
T ss_pred ccEEEEEeEe--cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCC-
Confidence 5789999996 7999999999866 7999999864 679999999988776543334456999999765
Q ss_pred eeEEEEcCCHHHHHHHHHHHHH
Q psy2207 279 DPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 279 ~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
++|+|.|+|++++++|+++|..
T Consensus 79 r~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 79 EYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ceEEEEeCCHHHHHHHHHHHhh
Confidence 6899999999999999999953
No 15
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.71 E-value=1.3e-16 Score=118.28 Aligned_cols=87 Identities=26% Similarity=0.530 Sum_probs=76.9
Q ss_pred eeeeeeecc--CCCceEEEEEEECCEEEEEccCccC--ccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN 287 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s 287 (305)
++|||++++ .+.|++|||+|.++.|+||+++.+. .|.+.|+|.++.+...+ ..+++|+|...+++.|+|+|+|
T Consensus 1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~~~~~~~~~a~s 77 (91)
T cd01246 1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDD---SDDKCFTIDTGGDKTLHLRANS 77 (91)
T ss_pred CeEEEEEecccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECC---CCCcEEEEEcCCCCEEEEECCC
Confidence 579999987 7889999999999999999999877 89999999988776543 2368999998776889999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2207 288 EQSYERWMKAMREA 301 (305)
Q Consensus 288 ~e~~~~Wi~al~~a 301 (305)
++++.+||.||+.|
T Consensus 78 ~~e~~~Wi~al~~a 91 (91)
T cd01246 78 EEERQRWVDALELA 91 (91)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999875
No 16
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.70 E-value=1.4e-16 Score=120.12 Aligned_cols=88 Identities=14% Similarity=0.278 Sum_probs=68.7
Q ss_pred eeeeeeecc-----------CCCceEEEEEEE-CCEEEEEccC-ccCccceEEEecCeEEEEcc-ccCCcceeEEEEeCC
Q psy2207 212 HSGWLHKKS-----------GRNWKRYWFVLK-DQVMYKYKAS-EDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQG 277 (305)
Q Consensus 212 ~~G~L~~~~-----------~~~wkrrw~vL~-~~~L~~y~~~-~d~~p~~~i~L~~~~v~~~~-~~~~~~~~F~l~~~~ 277 (305)
.+|||.+.+ .+.|+||||||+ ++.|+||+.. .+..|.|.|+|..+..+... ...+.+++|.|.++
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp- 79 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTP- 79 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECC-
Confidence 368888876 457999999998 5788777655 47789999999765554433 22344689999855
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHH
Q psy2207 278 QDPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 278 ~~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
.++|+|.|+|+++++.|+++|..
T Consensus 80 ~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 80 DKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred CceEEEEeCCHHHHHHHHHHHHh
Confidence 57899999999999999999963
No 17
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.68 E-value=1e-15 Score=115.32 Aligned_cols=93 Identities=31% Similarity=0.593 Sum_probs=83.8
Q ss_pred ceeeeeeecc--CCCceEEEEEEECCEEEEEccCc---cCccceEEEecCeEEEEcccc-----CCcceeEEEEeCCcee
Q psy2207 211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDP 280 (305)
Q Consensus 211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~---d~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~~~~ 280 (305)
+++|||.+++ .+.|+++||+|.++.|++|+++. +..|.+.|+|.++.|...... ...+++|.|.++++..
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~ 81 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKS 81 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEE
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcE
Confidence 5899999998 88999999999999999999988 688999999999988866544 3677999999988878
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 281 LVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 281 ~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
|+|.|+|+++++.|+++|++|+.
T Consensus 82 ~~~~~~s~~~~~~W~~~i~~~~~ 104 (104)
T PF00169_consen 82 YLFSAESEEERKRWIQAIQKAIK 104 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999863
No 18
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.68 E-value=5.7e-16 Score=115.46 Aligned_cols=89 Identities=25% Similarity=0.504 Sum_probs=75.6
Q ss_pred eeeeeeecc---CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207 212 HSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD 286 (305)
Q Consensus 212 ~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~ 286 (305)
+.|||.+++ .+.|++|||+|.++.|+||+++.+ ..+.+.|+|..+.|.........+++|.|..++ +.|+|+|+
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~-~~~~f~a~ 79 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT-KTWHFQAD 79 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccccCCceEEEEEcCC-cEEEEECC
Confidence 479999886 468999999999999999998876 677889999888877665443467999999666 78999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2207 287 NEQSYERWMKAMREA 301 (305)
Q Consensus 287 s~e~~~~Wi~al~~a 301 (305)
|++++++|+.||+.+
T Consensus 80 s~~~~~~Wi~al~~~ 94 (94)
T cd01250 80 SEEERDDWISAIQES 94 (94)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999753
No 19
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.67 E-value=5e-16 Score=119.04 Aligned_cols=89 Identities=25% Similarity=0.385 Sum_probs=72.0
Q ss_pred eeeeeeecc--C----CCceEEEEEEECCE-------EEEEccCccCccceEEEecCeEEEEcc-----ccCCcceeEEE
Q psy2207 212 HSGWLHKKS--G----RNWKRYWFVLKDQV-------MYKYKASEDIKALLSIPVLGYELEALN-----EQDNFKYVFQL 273 (305)
Q Consensus 212 ~~G~L~~~~--~----~~wkrrw~vL~~~~-------L~~y~~~~d~~p~~~i~L~~~~v~~~~-----~~~~~~~~F~l 273 (305)
.+|||.+++ . +.|++|||||.+.. |+||+++.+..|.|.|+|..+.++... ......+.|.|
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i 80 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDI 80 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEE
Confidence 369999988 2 39999999998765 699999999999999999887665321 11234578999
Q ss_pred EeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 274 KHQGQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 274 ~~~~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
.+ ..++|+|.|+|++++++||.+|++.
T Consensus 81 ~t-~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 81 ET-IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred Ee-CCccEEEEECCHHHHHHHHHHHHhh
Confidence 85 4578999999999999999999764
No 20
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.66 E-value=4.9e-16 Score=115.62 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=75.0
Q ss_pred eeeeeecc---CCCceEEEEEEEC----CEEEEEccCccCccceEEEecCeEEEEcccc-CCcceeEEEEeCCc-eeEEE
Q psy2207 213 SGWLHKKS---GRNWKRYWFVLKD----QVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQ-DPLVF 283 (305)
Q Consensus 213 ~G~L~~~~---~~~wkrrw~vL~~----~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-~~~~~~F~l~~~~~-~~~~f 283 (305)
.|||.|++ .+.|++|||+|.+ +.|+||+.+.+..|.+.|+|..+.|.+..+. .+++|+|+|+.+.. .+|++
T Consensus 2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~ 81 (98)
T cd01245 2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYS 81 (98)
T ss_pred CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEE
Confidence 48898887 5789999999986 9999999999999999999998877765443 36789999997765 57999
Q ss_pred EcCCHHHHHHHHHHHHH
Q psy2207 284 GADNEQSYERWMKAMRE 300 (305)
Q Consensus 284 ~a~s~e~~~~Wi~al~~ 300 (305)
+|++ +++++||++|++
T Consensus 82 ~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 82 CRSS-EERDKWIESLQA 97 (98)
T ss_pred eCCH-HHHHHHHHHHhc
Confidence 9999 999999999975
No 22
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=1.8e-15 Score=117.03 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=73.0
Q ss_pred ceeeeeeecc----CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEc----cccCCcceeEEEEe--CC
Q psy2207 211 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEAL----NEQDNFKYVFQLKH--QG 277 (305)
Q Consensus 211 ~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~----~~~~~~~~~F~l~~--~~ 277 (305)
.+.|||+... .+.|+||||||+|+.|+||+.+.+ ..|++.|+|.++.+... .+...++++|.|.. +.
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~ 81 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK 81 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence 5789998633 789999999999999999998776 67999999988877643 23357788999853 22
Q ss_pred -----------------ceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 278 -----------------QDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 278 -----------------~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
...|+|+|||.+++++|+.||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 113789999999999999999864
No 23
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.61 E-value=9.1e-15 Score=110.75 Aligned_cols=91 Identities=20% Similarity=0.447 Sum_probs=66.8
Q ss_pred ceeeeeeecc--CCCceEEEEEEE-CCEEEEEccCccCccceEEEecCeEEE---EccccCCcceeEEEEeCC---ceeE
Q psy2207 211 QHSGWLHKKS--GRNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELE---ALNEQDNFKYVFQLKHQG---QDPL 281 (305)
Q Consensus 211 ~~~G~L~~~~--~~~wkrrw~vL~-~~~L~~y~~~~d~~p~~~i~L~~~~v~---~~~~~~~~~~~F~l~~~~---~~~~ 281 (305)
+++|||.+++ .+.|++|||+|+ ++.|+||+......+.+.++|.++.|. +......+++.|.|...+ ...-
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r 81 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIER 81 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcccCE
Confidence 5899999998 789999999998 788888887655445577777776652 111123456899997322 1112
Q ss_pred EEEcCCHHHHHHHHHHHHHH
Q psy2207 282 VFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 282 ~f~a~s~e~~~~Wi~al~~a 301 (305)
+|+|+|++++++||+||+.+
T Consensus 82 ~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 82 TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EEEeCCHHHHHHHHHHHHhh
Confidence 56799999999999999876
No 24
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.60 E-value=1.1e-14 Score=110.90 Aligned_cols=81 Identities=23% Similarity=0.410 Sum_probs=66.5
Q ss_pred CCCceEEEEEEECCEEEEEccCccC--ccce--EEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHH
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKASEDI--KALL--SIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~--~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~ 296 (305)
.+.|+++||+|++..|+||+++... ...+ .|+|.++.+...++...++++|.|..+++..|+|+|+|++++..|+.
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~ 99 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVR 99 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHH
Confidence 5689999999999999999987643 2333 67777887777655456779999988887899999999999999999
Q ss_pred HHHHH
Q psy2207 297 AMREA 301 (305)
Q Consensus 297 al~~a 301 (305)
+|+.|
T Consensus 100 aL~~~ 104 (104)
T cd01253 100 ALKSA 104 (104)
T ss_pred HHhcC
Confidence 99753
No 25
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.59 E-value=7.7e-15 Score=109.34 Aligned_cols=83 Identities=28% Similarity=0.527 Sum_probs=68.6
Q ss_pred CCCceEEEEEEECCEEEEEccCccC--ccceEEEecCeEEEEccccCCcceeEEEEeC---CceeEEEEcCCHHHHHHHH
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQDPLVFGADNEQSYERWM 295 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~---~~~~~~f~a~s~e~~~~Wi 295 (305)
.+.|++|||+|++..|+||++..+. .|...|.|.|+.|.++..-...+|.|+|..+ +.++|+|.|+|++++.+||
T Consensus 17 ~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wm 96 (106)
T cd01237 17 LKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWM 96 (106)
T ss_pred hhhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHH
Confidence 5679999999999999999997764 4555666689999877544455689999853 4568999999999999999
Q ss_pred HHHHHHHc
Q psy2207 296 KAMREATT 303 (305)
Q Consensus 296 ~al~~a~~ 303 (305)
+|++.|++
T Consensus 97 aa~rlas~ 104 (106)
T cd01237 97 AACRLASK 104 (106)
T ss_pred HHHHHhhC
Confidence 99999975
No 26
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.58 E-value=2.4e-14 Score=106.92 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEc--cccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHH
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAM 298 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~--~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al 298 (305)
.+.|++|||+|.+..|+||+++. ..|.|.|+|.....+.. +......+.|+|+++. ++|++.|+|++++++||.||
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al 95 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFEAPVEATDWLNAL 95 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECCCHHHHHHHHHHH
Confidence 46899999999999999999876 58999999987666532 2223445899999765 58999999999999999999
Q ss_pred HHH
Q psy2207 299 REA 301 (305)
Q Consensus 299 ~~a 301 (305)
+++
T Consensus 96 ~k~ 98 (98)
T cd01244 96 EKQ 98 (98)
T ss_pred hcC
Confidence 864
No 27
>KOG0930|consensus
Probab=99.57 E-value=1.1e-14 Score=124.32 Aligned_cols=95 Identities=22% Similarity=0.501 Sum_probs=81.7
Q ss_pred CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCC-------
Q psy2207 208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG------- 277 (305)
Q Consensus 208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~------- 277 (305)
-++...|||.+.+ .+.||||||+|.+++||||....|..|.|.|+|.+..+...+ +..++++|+|+.++
T Consensus 258 fnpdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~Ve-dP~kP~cfEly~ps~~gq~IK 336 (395)
T KOG0930|consen 258 FNPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVE-DPKKPNCFELYIPSNKGQVIK 336 (395)
T ss_pred cCccccceeeeecCCcccchhheeEEeecceeeeeeeccCCCCCcceeccccceeecc-CCCCCCeEEEecCCCCcCeee
Confidence 3457899999998 678999999999999999999999999999999888776553 35789999998542
Q ss_pred --------------ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 278 --------------QDPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 278 --------------~~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
..+|..+|.+.|++++||++|+.++.
T Consensus 337 ACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 337 ACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred eecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 23799999999999999999987653
No 28
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=1.2e-13 Score=106.43 Aligned_cols=83 Identities=16% Similarity=0.329 Sum_probs=71.0
Q ss_pred CCCceEEEEEEECCEEEEEccCcc-------CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHH
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKASED-------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYER 293 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~~~d-------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~ 293 (305)
.+.|+++||||+|..|++|+++.. ......|.|.++.+.+..+...++++|.|..+++..|.|+|.++++|+.
T Consensus 23 ~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~ 102 (117)
T cd01230 23 KRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQS 102 (117)
T ss_pred CCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHH
Confidence 368999999999999999999864 2345678888887777666778889999998888889999999999999
Q ss_pred HHHHHHHHHc
Q psy2207 294 WMKAMREATT 303 (305)
Q Consensus 294 Wi~al~~a~~ 303 (305)
||.+|..|+.
T Consensus 103 Wi~~I~~~~~ 112 (117)
T cd01230 103 WIERINVVAA 112 (117)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 29
>KOG1818|consensus
Probab=99.50 E-value=6.2e-15 Score=140.14 Aligned_cols=83 Identities=34% Similarity=0.658 Sum_probs=70.8
Q ss_pred ccccCCCcccCcCCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHH
Q psy2207 60 SLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHY 138 (305)
Q Consensus 60 ~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~ 138 (305)
+.+.++...+.....+|-|+.. ..|+.|...|++++|.||||+||.|||.+|++...+||..+ ++++|||+.||+.
T Consensus 144 Fpe~~e~d~mf~~~~~pdW~D~---~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~ 220 (634)
T KOG1818|consen 144 FPELDENDAMFDAETAPDWIDS---EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYEL 220 (634)
T ss_pred ccccccchhhhcccCCcccccc---cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHH
Confidence 3444445556777889999953 47999999999999999999999999999999999999776 5999999999999
Q ss_pred HHhccCC
Q psy2207 139 LVQEFDD 145 (305)
Q Consensus 139 ~~~~~~~ 145 (305)
+.....+
T Consensus 221 l~~~s~~ 227 (634)
T KOG1818|consen 221 LTRASVG 227 (634)
T ss_pred hhhcccc
Confidence 9876555
No 30
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.48 E-value=1.9e-14 Score=137.17 Aligned_cols=68 Identities=29% Similarity=0.655 Sum_probs=55.3
Q ss_pred CCCCeeeecCCC-ccccccccccccc-----ccccccccccceeccCccCCeecccC---------CCCccccccHhhHH
Q psy2207 73 KVAPLWIPDSRV-SMCQRCTSVFTVT-----FRRHHCRACGKVVCGPCSDYLAPLEY---------KKFRNFRVCEECYH 137 (305)
Q Consensus 73 ~~~p~w~~d~~~-~~C~~C~~~f~~~-----~rrhhCr~cg~v~C~~Cs~~~~~l~~---------~~~~~~rvC~~C~~ 137 (305)
..+|.|++|++. ..|+.|+.+|+.+ .|+||||+||.+||..||.++..++. ....+.|||+.||.
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 468999999984 7899999999743 69999999999999999998754321 12357799999996
Q ss_pred HHH
Q psy2207 138 YLV 140 (305)
Q Consensus 138 ~~~ 140 (305)
.+.
T Consensus 528 q~E 530 (1374)
T PTZ00303 528 EYE 530 (1374)
T ss_pred HHH
Confidence 665
No 31
>KOG1819|consensus
Probab=99.47 E-value=7.8e-15 Score=134.12 Aligned_cols=68 Identities=38% Similarity=0.812 Sum_probs=61.2
Q ss_pred CCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccH-----hhHHHHH
Q psy2207 73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCE-----ECYHYLV 140 (305)
Q Consensus 73 ~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~-----~C~~~~~ 140 (305)
..+|.||||..+..||-|..+|+.++||||||+||.|||+.||...++||..+ .+..|||. .||....
T Consensus 890 lsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~rqd 963 (990)
T KOG1819|consen 890 LSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTRQD 963 (990)
T ss_pred cCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceeecc
Confidence 45899999999999999999999999999999999999999999999998554 78999998 7776543
No 32
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.45 E-value=1.1e-12 Score=95.34 Aligned_cols=83 Identities=25% Similarity=0.477 Sum_probs=70.7
Q ss_pred eeeeecc---CCCceEEEEEE--ECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCH
Q psy2207 214 GWLHKKS---GRNWKRYWFVL--KDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNE 288 (305)
Q Consensus 214 G~L~~~~---~~~wkrrw~vL--~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~ 288 (305)
|||.|+. .+.|.+|||+| ..++|.||.++++....|.|+|....+..... ...|.|. .+..+|++.|.|+
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~~----~~~I~id-sg~~i~hLKa~s~ 75 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANKK----SRRIDID-SGDEIWHLKAKSQ 75 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecCC----CCEEEEE-cCCeEEEEEcCCH
Confidence 7888775 67899999999 89999999999888888999998887765432 2478886 5666899999999
Q ss_pred HHHHHHHHHHHHH
Q psy2207 289 QSYERWMKAMREA 301 (305)
Q Consensus 289 e~~~~Wi~al~~a 301 (305)
++.+.|+.||+.|
T Consensus 76 ~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 76 EDFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
No 33
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.44 E-value=1.4e-12 Score=94.39 Aligned_cols=92 Identities=23% Similarity=0.411 Sum_probs=77.6
Q ss_pred ceeeeeeecc----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc-cCCcceeEEEEeCCce------
Q psy2207 211 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNFKYVFQLKHQGQD------ 279 (305)
Q Consensus 211 ~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~-~~~~~~~F~l~~~~~~------ 279 (305)
+..|||.... +..-|++||||++.+|+||+...+..|.+.|||.+..+...+. -.+++|+|+|+.+..+
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~ 81 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDY 81 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccccch
Confidence 5678988776 4567999999999999999999999999999999988875443 2577899999976543
Q ss_pred -eEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 280 -PLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 280 -~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
.+-++|+|++++..|.+.+-.|-
T Consensus 82 k~lel~~~~~e~vdswkasflrag 105 (110)
T cd01256 82 KQLELGCETLEEVDSWKASFLRAG 105 (110)
T ss_pred heeeecCCCHHHHHHHHHHHHhcc
Confidence 67899999999999999987764
No 34
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.44 E-value=1.3e-12 Score=101.98 Aligned_cols=80 Identities=13% Similarity=0.427 Sum_probs=67.2
Q ss_pred CCCceEEEEEEECCEEEEEccCccCccceEEEe-cCeEEEEcccc-----------CCcceeEEEEeCCceeEEEEcCCH
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV-LGYELEALNEQ-----------DNFKYVFQLKHQGQDPLVFGADNE 288 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L-~~~~v~~~~~~-----------~~~~~~F~l~~~~~~~~~f~a~s~ 288 (305)
...|++|||+|+++.|.||+++.+..+.+.|.| .++.|...... ....+.|.|. +.+|+|.|.|+|+
T Consensus 30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~-t~~R~~~l~a~s~ 108 (121)
T cd01254 30 CDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKIT-NSNRSLKLKCKSS 108 (121)
T ss_pred ccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEE-cCCcEEEEEeCCH
Confidence 347999999999999999999999999999999 56766643331 3456899997 5567899999999
Q ss_pred HHHHHHHHHHHHH
Q psy2207 289 QSYERWMKAMREA 301 (305)
Q Consensus 289 e~~~~Wi~al~~a 301 (305)
.++++|+++|+.|
T Consensus 109 ~~~~~Wi~~i~~a 121 (121)
T cd01254 109 RKLKQWMASIEDA 121 (121)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 35
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.42 E-value=2.5e-12 Score=100.14 Aligned_cols=91 Identities=27% Similarity=0.455 Sum_probs=65.5
Q ss_pred eeeeeeecc------------CCCceEEEEEEECCEEEEEccCc--------------cCccceEEEecCeEEEEccccC
Q psy2207 212 HSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASE--------------DIKALLSIPVLGYELEALNEQD 265 (305)
Q Consensus 212 ~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~--------------d~~p~~~i~L~~~~v~~~~~~~ 265 (305)
++|||+++. .+.|+..|+||++..|++|+... ...|.+.|.|.++.+.+..+..
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~ 81 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT 81 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence 457776653 45799999999999999999832 1234567999988888877777
Q ss_pred CcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 266 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 266 ~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
.++|+|.|...++..|.|+|.|+++|+.||.+|.-++
T Consensus 82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 8899999998888899999999999999999998765
No 36
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.41 E-value=7.3e-12 Score=92.94 Aligned_cols=92 Identities=29% Similarity=0.556 Sum_probs=78.7
Q ss_pred ceeeeeeecc---CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEccccC--CcceeEEEEeCCceeEE
Q psy2207 211 QHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQD--NFKYVFQLKHQGQDPLV 282 (305)
Q Consensus 211 ~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~~~~--~~~~~F~l~~~~~~~~~ 282 (305)
++.|||.++. ...|+++|++|.++.|++|+...+ ..+.+.|+|.++.+....... ..+++|.|.......|+
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~ 81 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYL 81 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEE
Confidence 5789999887 568999999999999999998766 577899999998877655432 45799999987776799
Q ss_pred EEcCCHHHHHHHHHHHHHHH
Q psy2207 283 FGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 283 f~a~s~e~~~~Wi~al~~a~ 302 (305)
|.|+|++++..|+.+|+.++
T Consensus 82 f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 82 LQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 37
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.39 E-value=6.8e-12 Score=94.07 Aligned_cols=92 Identities=23% Similarity=0.363 Sum_probs=75.9
Q ss_pred ceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC---ccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207 211 QHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD 286 (305)
Q Consensus 211 ~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~---~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~ 286 (305)
+..|+|.|.. +..|.|+||.+.|..||+.....+. .+.+.|+|.+..|...++..+.+|+|+|+. .++.|.++|+
T Consensus 3 ikEG~L~K~~~k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~-~~ks~~l~A~ 81 (99)
T cd01220 3 IRQGCLLKLSKKGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFG-GQCAITVAAS 81 (99)
T ss_pred eeEEEEEEEeCCCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEc-CCeEEEEECC
Confidence 5789999987 6688899999999888887765433 578999999999876554446679999984 5567999999
Q ss_pred CHHHHHHHHHHHHHHHc
Q psy2207 287 NEQSYERWMKAMREATT 303 (305)
Q Consensus 287 s~e~~~~Wi~al~~a~~ 303 (305)
|++++.+||++|++|+.
T Consensus 82 s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 82 TRAEKEKWLADLSKAIA 98 (99)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999999874
No 38
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.37 E-value=2.4e-13 Score=91.74 Aligned_cols=54 Identities=44% Similarity=0.974 Sum_probs=50.1
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccC-CCCccccccHhhHH
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY-KKFRNFRVCEECYH 137 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~-~~~~~~rvC~~C~~ 137 (305)
+..|+.|+.+|+++.|+|||+.||.+||..|+.++..++. .+.++.|||..||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 4689999999999999999999999999999999999876 57889999999985
No 39
>KOG1841|consensus
Probab=99.37 E-value=1.1e-13 Score=136.74 Aligned_cols=69 Identities=48% Similarity=0.869 Sum_probs=63.6
Q ss_pred cccCcCCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhh
Q psy2207 67 PELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEEC 135 (305)
Q Consensus 67 ~~~~~~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C 135 (305)
+...+|.+.|.|+||+..+.||+|.+.|++++||||||+||+|+|+-|.+.+..|.|......|||..|
T Consensus 540 pe~~lgkkqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 540 PEGGLGKKQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLSESEGRVSNVD 608 (1287)
T ss_pred cccccCCCCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcCcccccccccc
Confidence 344578899999999999999999999999999999999999999999999999999988888888766
No 40
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.34 E-value=2.8e-11 Score=93.15 Aligned_cols=89 Identities=22% Similarity=0.411 Sum_probs=53.4
Q ss_pred eeeeeeecc---CCCceEEEEEEE-CCEEEEEccCcc-------------CccceEEEe----cCeEEEE--ccccCCcc
Q psy2207 212 HSGWLHKKS---GRNWKRYWFVLK-DQVMYKYKASED-------------IKALLSIPV----LGYELEA--LNEQDNFK 268 (305)
Q Consensus 212 ~~G~L~~~~---~~~wkrrw~vL~-~~~L~~y~~~~d-------------~~p~~~i~L----~~~~v~~--~~~~~~~~ 268 (305)
++|||++.+ .+.|++|||+|. ++.|.||+.+.+ ....+.+.. ....... ........
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHL 80 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SS
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCC
Confidence 579999998 689999999999 999999999432 222222221 1111111 11112233
Q ss_pred eeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 269 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
..|.|. ++.++|+|.|++.++...|++||++|
T Consensus 81 ~~~~i~-T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 81 KVFSIF-TPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEEEE--SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCcEEE-CCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 577775 55678999999999999999999886
No 41
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=2.8e-12 Score=93.68 Aligned_cols=94 Identities=27% Similarity=0.474 Sum_probs=74.0
Q ss_pred ceeeeeeecc---CCCceEEEEEEECCEEEEEc----cCccCccceEEEecCeEEEEcccc----------CCcceeEEE
Q psy2207 211 QHSGWLHKKS---GRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYELEALNEQ----------DNFKYVFQL 273 (305)
Q Consensus 211 ~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~----~~~d~~p~~~i~L~~~~v~~~~~~----------~~~~~~F~l 273 (305)
.++|||++.+ .+.|++|||+|.+-.-|.|. .++...|...|.|.|++|...+.. .+..|.|..
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~a 82 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNA 82 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccccchhhhhe
Confidence 4899999998 67999999999975544443 244567999999999999854332 256688888
Q ss_pred EeCCceeEEEEcCCHHHHHHHHHHHHHHHcCC
Q psy2207 274 KHQGQDPLVFGADNEQSYERWMKAMREATTLS 305 (305)
Q Consensus 274 ~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~s 305 (305)
+.. +....|+++++.++..|++||=.|+..|
T Consensus 83 vke-gd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 83 VKE-GDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred ecc-CcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 744 4569999999999999999998887543
No 42
>KOG3531|consensus
Probab=99.33 E-value=1.1e-12 Score=126.42 Aligned_cols=92 Identities=33% Similarity=0.693 Sum_probs=80.9
Q ss_pred ceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc--CCcceeEEEEeCCceeEEEEcC
Q psy2207 211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ--DNFKYVFQLKHQGQDPLVFGAD 286 (305)
Q Consensus 211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~--~~~~~~F~l~~~~~~~~~f~a~ 286 (305)
.++|||..+- ...|++.|.|....+|++|++.+|..|+.++||.||.|.++.+. ..+.++|.|...+. +|+|+|+
T Consensus 925 qLsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~h-vyffrae 1003 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSH-VYFFRAE 1003 (1036)
T ss_pred hhhHHHHHHhhccccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeehhhh-HHHHhhh
Confidence 6899998765 66899999999999999999999999999999999999975543 34569999987776 5999999
Q ss_pred CHHHHHHHHHHHHHHHc
Q psy2207 287 NEQSYERWMKAMREATT 303 (305)
Q Consensus 287 s~e~~~~Wi~al~~a~~ 303 (305)
+....++|++.|+.|..
T Consensus 1004 s~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 1004 SYYTFERWMEVITDAPS 1020 (1036)
T ss_pred hhhhhhhHHHHhhcCCc
Confidence 99999999999997764
No 43
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.32 E-value=1.5e-11 Score=90.26 Aligned_cols=90 Identities=31% Similarity=0.615 Sum_probs=76.5
Q ss_pred eeeeeeecc-C--CCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207 212 HSGWLHKKS-G--RNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA 285 (305)
Q Consensus 212 ~~G~L~~~~-~--~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a 285 (305)
+.|||+++. . ..|+++|++|.+..|++|....+ ..+.+.|+|.++.+.......+..++|.|...+...|+|.|
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~ 80 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQA 80 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEe
Confidence 368888877 3 68999999999999999998776 68899999999888776554446789999977757899999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2207 286 DNEQSYERWMKAMREA 301 (305)
Q Consensus 286 ~s~e~~~~Wi~al~~a 301 (305)
+|++++..|+.+|+.|
T Consensus 81 ~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 81 ESEEEREEWIEALQSA 96 (96)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999999764
No 44
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.31 E-value=4.4e-11 Score=90.35 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=73.3
Q ss_pred ceeeeeeecc--CCCceEEEEEEECCEEEEEccCc-----cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207 211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE-----DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF 283 (305)
Q Consensus 211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~-----d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f 283 (305)
+.+|+|.+.+ .+.|+.|||.|-+..|.|++... .....+.|+|.++.|.... +...+|+|.|.... +.|.+
T Consensus 3 ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~-~~~~~~~F~I~~~~-rsf~l 80 (101)
T cd01219 3 LKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD-NLERPHSFLVSGKQ-RCLEL 80 (101)
T ss_pred ccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC-CCCcCceEEEecCC-cEEEE
Confidence 5789999988 56899999999877888888532 2345678999998887542 34567999998554 78999
Q ss_pred EcCCHHHHHHHHHHHHHHHc
Q psy2207 284 GADNEQSYERWMKAMREATT 303 (305)
Q Consensus 284 ~a~s~e~~~~Wi~al~~a~~ 303 (305)
+|+|++++++||+||+.|+.
T Consensus 81 ~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 81 QARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999863
No 45
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.25 E-value=1.3e-10 Score=85.78 Aligned_cols=89 Identities=28% Similarity=0.534 Sum_probs=73.4
Q ss_pred eeeeeecc-C-----CCceEEEEEEECCEEEEEccCccCccc-eEEEecCeEEEEccccCCcceeEEEEeCC--ceeEEE
Q psy2207 213 SGWLHKKS-G-----RNWKRYWFVLKDQVMYKYKASEDIKAL-LSIPVLGYELEALNEQDNFKYVFQLKHQG--QDPLVF 283 (305)
Q Consensus 213 ~G~L~~~~-~-----~~wkrrw~vL~~~~L~~y~~~~d~~p~-~~i~L~~~~v~~~~~~~~~~~~F~l~~~~--~~~~~f 283 (305)
.|||.+.+ . ..|+++|++|.+..|++|+...+..+. +.+++.+..+.......+.+++|.|.... ...|.|
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~ 81 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVF 81 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEE
Confidence 57887776 2 689999999999999999998776665 68999887766554433467899999774 778999
Q ss_pred EcCCHHHHHHHHHHHHHH
Q psy2207 284 GADNEQSYERWMKAMREA 301 (305)
Q Consensus 284 ~a~s~e~~~~Wi~al~~a 301 (305)
+|+|+++++.|+.+|+.|
T Consensus 82 ~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 82 QADSEEEAQEWVEALQQA 99 (99)
T ss_pred EcCCHHHHHHHHHHHhcC
Confidence 999999999999999864
No 46
>KOG1090|consensus
Probab=99.19 E-value=7.5e-12 Score=122.34 Aligned_cols=96 Identities=25% Similarity=0.344 Sum_probs=77.2
Q ss_pred CCCCCceeeeeeecc--CCCceEEEEEEE--CCEEEEEccCccCccceEEEecCeEEEE--ccccCCcceeEEEEeCCce
Q psy2207 206 NDSGSQHSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQD 279 (305)
Q Consensus 206 ~~~~~~~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~~d~~p~~~i~L~~~~v~~--~~~~~~~~~~F~l~~~~~~ 279 (305)
..++.+..|||+|+| .+.|+.|||||. ...|+||..-.|.+|.|.|+|.....+. .+...+.+-.|.|. +..+
T Consensus 1630 ~teNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlk-tt~r 1708 (1732)
T KOG1090|consen 1630 PTENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLK-TTNR 1708 (1732)
T ss_pred cccccCcccchhhcchhhcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeee-hhhH
Confidence 345567899999999 899999999995 4799999999999999999996544432 22223444567776 5567
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 280 PLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 280 ~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
+|.|+|.+...+++|++.|+...
T Consensus 1709 vynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1709 VYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred HHHHHhccchHHHHHHHHHHHhh
Confidence 89999999999999999998764
No 47
>KOG1842|consensus
Probab=99.10 E-value=1e-11 Score=112.38 Aligned_cols=69 Identities=35% Similarity=0.889 Sum_probs=55.7
Q ss_pred CCCeeeecCCCcccccccccccccccccccccccceeccCccCCee---cccC--------------------CCCcccc
Q psy2207 74 VAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA---PLEY--------------------KKFRNFR 130 (305)
Q Consensus 74 ~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~---~l~~--------------------~~~~~~r 130 (305)
.-..|+.|+.+.-|..|..+|++++||||||.||.|+|..|+.+-- .++. ....+.|
T Consensus 170 svVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iR 249 (505)
T KOG1842|consen 170 SVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIR 249 (505)
T ss_pred ccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhH
Confidence 3467999999999999999999999999999999999999997632 0000 0123579
Q ss_pred ccHhhHHHHHhc
Q psy2207 131 VCEECYHYLVQE 142 (305)
Q Consensus 131 vC~~C~~~~~~~ 142 (305)
+|..|...+...
T Consensus 250 lC~hCl~~L~~R 261 (505)
T KOG1842|consen 250 LCMHCLDNLFRR 261 (505)
T ss_pred HHHHHHHHHHHH
Confidence 999999988854
No 48
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.08 E-value=2.2e-10 Score=85.91 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=42.4
Q ss_pred CeeecCCCc-CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207 1 MKVCLPQTE-DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46 (305)
Q Consensus 1 m~v~~~~~~-~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~ 46 (305)
|+|+.+.++ +++|+|+|.+++|+|.|+|+|++||++||++|++||+
T Consensus 52 ~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 52 MLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred eEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 678877774 7899999999999999999999999999999999986
No 49
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.07 E-value=3.3e-10 Score=85.40 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=42.9
Q ss_pred CeeecC-CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207 1 MKVCLP-QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE 49 (305)
Q Consensus 1 m~v~~~-~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~ 49 (305)
|.|... |++.++|+|+|.+++|||.|+|+|++||.+|+++|++||+...
T Consensus 53 ~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l 102 (104)
T cd01218 53 VQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLL 102 (104)
T ss_pred eEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 455444 4467899999999999999999999999999999999998754
No 50
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.04 E-value=3.2e-10 Score=85.65 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=43.0
Q ss_pred CeeecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207 1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46 (305)
Q Consensus 1 m~v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~ 46 (305)
|+|...++.+.+|+|.|.+++|+|.|+|+|++||++||++|+.+|+
T Consensus 55 ~~v~~~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 55 MQVCEGDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEeCCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 6788777888999999999999999999999999999999999986
No 51
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.76 E-value=1.5e-07 Score=70.41 Aligned_cols=90 Identities=14% Similarity=0.389 Sum_probs=67.8
Q ss_pred eeeeeeecc------CCCceEEEEEEECCEEEEEccCccC---ccceEEEec-CeEEEEcc-------ccCCcceeEEEE
Q psy2207 212 HSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDI---KALLSIPVL-GYELEALN-------EQDNFKYVFQLK 274 (305)
Q Consensus 212 ~~G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d~---~p~~~i~L~-~~~v~~~~-------~~~~~~~~F~l~ 274 (305)
+.|||.... ++.|++.|.||.+..|.+|..+.+. .|...+++. .+.|.... +....++.|+|.
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~ 81 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQIL 81 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEE
Confidence 678987654 2489999999999999999987763 466677773 34433211 224667999998
Q ss_pred eCC-ceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 275 HQG-QDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 275 ~~~-~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
..+ .+..+|-|+++++.++|+.+|.+-
T Consensus 82 ~~~~~~~lllLA~s~~ek~kWV~~L~~~ 109 (112)
T cd01242 82 YANEARDLLLLAPQTDEQNKWVSRLVKK 109 (112)
T ss_pred eCCccceEEEEeCCchHHHHHHHHHHHh
Confidence 643 467899999999999999999764
No 52
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.75 E-value=2.1e-07 Score=70.64 Aligned_cols=91 Identities=16% Similarity=0.357 Sum_probs=68.0
Q ss_pred ceeeeeeecc----CCCceEEEEEEECCEEEEEccCccC------ccceEEEe--cCeEEEEcc-------ccCCcceeE
Q psy2207 211 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDI------KALLSIPV--LGYELEALN-------EQDNFKYVF 271 (305)
Q Consensus 211 ~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d~------~p~~~i~L--~~~~v~~~~-------~~~~~~~~F 271 (305)
.+.|||.... ++.|++.|+||.+..|++|..+.+. .+...|++ ..+.|.... .....++.|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 5889997655 5789999999999999999987753 23455677 345554222 224567899
Q ss_pred EEEeC------CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 272 QLKHQ------GQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 272 ~l~~~------~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
+|... ...+.+|-|+++.+.++|+.||..-
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 99752 3357899999999999999999753
No 53
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.74 E-value=3.9e-08 Score=73.60 Aligned_cols=90 Identities=24% Similarity=0.401 Sum_probs=62.3
Q ss_pred eeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccc---eEEEecCeEEEEcccc-----CCcceeEEEEeCC----
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKAL---LSIPVLGYELEALNEQ-----DNFKYVFQLKHQG---- 277 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~---~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~---- 277 (305)
+.|+|+.+. ++.|+++||+|+..-|||+--.....+. ....+.+..|-..-.. .-.+|+|.|.++.
T Consensus 2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~ 81 (114)
T cd01259 2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSK 81 (114)
T ss_pred ccceEEEccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcc
Confidence 679999987 8899999999999999887655433332 2233444444322110 1234888886532
Q ss_pred --ceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 278 --QDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 278 --~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
...-+|+|||++.++.|+.||+-|
T Consensus 82 ~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 82 GSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred cchhheeeccCCHHHHHHHHHHHHHH
Confidence 234689999999999999999865
No 54
>KOG1843|consensus
Probab=98.73 E-value=3.1e-09 Score=95.58 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=64.5
Q ss_pred ccCcCCCCCeeeecCCCccccccccccc-ccccccccccccceeccCccCCe--ecccCCCCccccccHhhHHHHH
Q psy2207 68 ELNLGKVAPLWIPDSRVSMCQRCTSVFT-VTFRRHHCRACGKVVCGPCSDYL--APLEYKKFRNFRVCEECYHYLV 140 (305)
Q Consensus 68 ~~~~~~~~p~w~~d~~~~~C~~C~~~f~-~~~rrhhCr~cg~v~C~~Cs~~~--~~l~~~~~~~~rvC~~C~~~~~ 140 (305)
...++..+|+|.+++....||.|..+|+ ++.||||||.||.++|-.|+.-. ++.|.-...++|||+.|+..+.
T Consensus 144 ~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 144 SASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNLE 219 (473)
T ss_pred hhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhccC
Confidence 3445678999999999999999999999 78999999999999999999765 5556667899999999999994
No 55
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.71 E-value=3.3e-07 Score=69.11 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=68.8
Q ss_pred ceeeeeeeccCCCceEEEEEEECCEEEEEcc---CccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207 211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKA---SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN 287 (305)
Q Consensus 211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~---~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s 287 (305)
+..|-|.+..++..+.|+|.|=...|.|-+. .+.....+.++|.+..|....+....+++|.|..+ .++|.+.|+|
T Consensus 5 i~eG~L~K~~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~-~kSf~v~A~s 83 (104)
T cd01218 5 VGEGVLTKMCRKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTP-TKSFAVYAAT 83 (104)
T ss_pred EecCcEEEeecCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEecC-CeEEEEEcCC
Confidence 4678888777666677788886666665332 11234567899999888765544456799999855 5679999999
Q ss_pred HHHHHHHHHHHHHHHc
Q psy2207 288 EQSYERWMKAMREATT 303 (305)
Q Consensus 288 ~e~~~~Wi~al~~a~~ 303 (305)
+++..+|+++|.+|+.
T Consensus 84 ~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 84 ETEKREWMLHINKCVT 99 (104)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 56
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.57 E-value=5.7e-07 Score=67.07 Aligned_cols=87 Identities=13% Similarity=0.334 Sum_probs=60.2
Q ss_pred eeeeeeecc----CCCceEEEEEEEC-C-EE---EEEcc-----CccCccceEEEecCeEEEEccccCCcceeEEEEeCC
Q psy2207 212 HSGWLHKKS----GRNWKRYWFVLKD-Q-VM---YKYKA-----SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG 277 (305)
Q Consensus 212 ~~G~L~~~~----~~~wkrrw~vL~~-~-~L---~~y~~-----~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~ 277 (305)
+.|||+.+. +..|.+.||.... + .+ .++.. .........|.|..|.+...+.. .++|+|+|....
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~-dRRFCFei~~~~ 79 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESI-DKRFCFDVEVEE 79 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCc-cceeeEeeeecC
Confidence 369999886 4579999998854 2 32 22222 11122234566777777766543 678999997543
Q ss_pred c-eeEEEEcCCHHHHHHHHHHHH
Q psy2207 278 Q-DPLVFGADNEQSYERWMKAMR 299 (305)
Q Consensus 278 ~-~~~~f~a~s~e~~~~Wi~al~ 299 (305)
. .++.|.|+++.+...||+||.
T Consensus 80 ~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 80 KPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CCCeEEEEecCHHHHHHHHHhhc
Confidence 3 369999999999999999984
No 57
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.53 E-value=1e-07 Score=71.30 Aligned_cols=36 Identities=17% Similarity=0.572 Sum_probs=33.2
Q ss_pred CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
+.+|+|+|.+|+|+|+|+|+|++|+++||++|+.|+
T Consensus 66 ~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 66 SLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred ccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhhC
Confidence 447999999999999999999999999999999773
No 58
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.51 E-value=2.1e-07 Score=71.04 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=38.8
Q ss_pred ecCCCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207 4 CLPQTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIK 46 (305)
Q Consensus 4 ~~~~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~ 46 (305)
..+++++++|+|.|.+. +++|.|+|.|++||++||++|..++.
T Consensus 67 d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 67 DKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 45777889999999995 89999999999999999999998875
No 59
>KOG0690|consensus
Probab=98.49 E-value=1.8e-07 Score=82.98 Aligned_cols=96 Identities=17% Similarity=0.389 Sum_probs=68.0
Q ss_pred CCCCceeeeeeecc--CCCceEEEEEEE-CCEEEEEccCccCccceEEEecCeEEEEc---cccCCcceeEEEEeCCc--
Q psy2207 207 DSGSQHSGWLHKKS--GRNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEAL---NEQDNFKYVFQLKHQGQ-- 278 (305)
Q Consensus 207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~-~~~L~~y~~~~d~~p~~~i~L~~~~v~~~---~~~~~~~~~F~l~~~~~-- 278 (305)
...+++.|||+++| -+.|..|||+|. ++.|.-|++..........||.++.|.-. ....-+++.|.|..-.-
T Consensus 12 ~~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT 91 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT 91 (516)
T ss_pred hhhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeeeee
Confidence 34568999999999 889999999994 78999998754322233355555544311 11234678898875322
Q ss_pred -eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 279 -DPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 279 -~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
..-.|.+++.+++++|+.||+..+
T Consensus 92 VIERTF~ves~~eRq~W~~AIq~vs 116 (516)
T KOG0690|consen 92 VIERTFYVESAEERQEWIEAIQAVS 116 (516)
T ss_pred eeeeeeecCCHHHHHHHHHHHHHHh
Confidence 234799999999999999998765
No 60
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.49 E-value=1.1e-06 Score=66.23 Aligned_cols=89 Identities=16% Similarity=0.358 Sum_probs=68.7
Q ss_pred eeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc-----CCcceeEEEEeCCceeEEEE
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDPLVFG 284 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~~~~~~f~ 284 (305)
++||+-.-. -..|||+|+.|....+.+|.++...++...|||..+..+..... ...+|+|+|.+ ...+|+.+
T Consensus 2 kEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~vY~VG 80 (117)
T cd01239 2 KEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNVYFVG 80 (117)
T ss_pred ccceEEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEEEEec
Confidence 578885443 56799999999999999999999999999999977655432211 35679999996 44567775
Q ss_pred cC--------------------CHHHHHHHHHHHHHH
Q psy2207 285 AD--------------------NEQSYERWMKAMREA 301 (305)
Q Consensus 285 a~--------------------s~e~~~~Wi~al~~a 301 (305)
.+ ..+.++.|-.||+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 81 GEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred ccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 53 456789999999876
No 61
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.47 E-value=3.3e-07 Score=68.01 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=40.4
Q ss_pred eecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 3 v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
+.++|++..+|+|.|.++.+||.++|+|+++|.+|++.|++|+
T Consensus 56 ~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 56 VNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 4568889999999999999999999999999999999999987
No 62
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=3.5e-06 Score=64.35 Aligned_cols=93 Identities=16% Similarity=0.264 Sum_probs=68.0
Q ss_pred ceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc-----------CccceEEEecCeEEEEccccCCcceeEEEEeCC
Q psy2207 211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG 277 (305)
Q Consensus 211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d-----------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~ 277 (305)
+++|-|.+.. .+..+.|++-|=++.|.|-+...+ ..-.+.++|..+.|...++....+++|.|....
T Consensus 5 I~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~ 84 (112)
T cd01261 5 IMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIILKD 84 (112)
T ss_pred cccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEcCC
Confidence 5677777665 456777877777777766664322 112345888888887655555567999999755
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 278 QDPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 278 ~~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
++.|.|+|.|+++.++||++|..+..
T Consensus 85 ~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 85 GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 66899999999999999999988753
No 63
>KOG3640|consensus
Probab=98.43 E-value=2.9e-07 Score=90.66 Aligned_cols=96 Identities=16% Similarity=0.348 Sum_probs=74.7
Q ss_pred CCCceeeeeeecc----CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEcc----ccCCcceeEEEEe-
Q psy2207 208 SGSQHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALN----EQDNFKYVFQLKH- 275 (305)
Q Consensus 208 ~~~~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~----~~~~~~~~F~l~~- 275 (305)
..+.+.|||+.-. ...|.||||+|.++.+.|++.+.| ..|.+.|+|..|+-.... +...+++.|.|..
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~ 1067 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVW 1067 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEee
Confidence 4467889998754 667999999999999999998776 568999999877654322 2246778999872
Q ss_pred ---C--------Cce-eEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 276 ---Q--------GQD-PLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 276 ---~--------~~~-~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
. ..+ -.+|+|||.++++.|+.+|..+..
T Consensus 1068 rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1068 RPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred cccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 0 111 478999999999999999988764
No 64
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.39 E-value=5.8e-07 Score=68.07 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=33.0
Q ss_pred CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46 (305)
Q Consensus 12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~ 46 (305)
.++|.|.+++|+|.|+|+|++|+++||++|+.++.
T Consensus 67 ~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 67 WYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred cceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 35999999999999999999999999999999885
No 65
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.32 E-value=1e-06 Score=65.64 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=32.6
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
.++.|+|.+++|+|.|.|+|++|+++||++||.++
T Consensus 60 ~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 60 EKGRFEIHSNNEVIALKASSDKQMNYWLQALQSKR 94 (95)
T ss_pred CCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhhc
Confidence 47899999999999999999999999999999763
No 66
>KOG1409|consensus
Probab=98.31 E-value=1.5e-07 Score=83.37 Aligned_cols=67 Identities=39% Similarity=0.899 Sum_probs=56.4
Q ss_pred CCCCeeeecCCCcccccccccccc-----------cccccccccccceeccCccCCeecccCCCC-ccccccHhhHHHHH
Q psy2207 73 KVAPLWIPDSRVSMCQRCTSVFTV-----------TFRRHHCRACGKVVCGPCSDYLAPLEYKKF-RNFRVCEECYHYLV 140 (305)
Q Consensus 73 ~~~p~w~~d~~~~~C~~C~~~f~~-----------~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~-~~~rvC~~C~~~~~ 140 (305)
+..|.|+.++ .|+.|.++|.- -.|.||||.||..||+.|++++...|.++. -..|+|+.||..+.
T Consensus 274 ~etpewl~s~---~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~ 350 (404)
T KOG1409|consen 274 VETPEWLDSD---SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIK 350 (404)
T ss_pred ecCccccccc---hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhh
Confidence 5689999754 69999998841 147899999999999999999988888774 47899999999998
Q ss_pred hc
Q psy2207 141 QE 142 (305)
Q Consensus 141 ~~ 142 (305)
..
T Consensus 351 ~~ 352 (404)
T KOG1409|consen 351 DE 352 (404)
T ss_pred cC
Confidence 65
No 67
>KOG0521|consensus
Probab=98.27 E-value=1.6e-06 Score=86.97 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=77.4
Q ss_pred CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccc---c-cccc--C-------CCcccCcCCCCC
Q psy2207 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNR---R-SLTQ--S-------SIPELNLGKVAP 76 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~---~-~~~~--~-------~~~~~~~~~~~p 76 (305)
....+|+|+++.|++.|||+|+.+..+||.+|+..|....+....-... + .... . .+.........+
T Consensus 333 drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~s~~~s~~~~~~ 412 (785)
T KOG0521|consen 333 DRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDSTGGRNTQSGHSSSASYSTITSANTSRERLNK 412 (785)
T ss_pred cceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHhccCcccccccCCCcccccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999998866543211000 0 0000 0 000000000011
Q ss_pred e---e---eecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCcccccc
Q psy2207 77 L---W---IPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVC 132 (305)
Q Consensus 77 ~---w---~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC 132 (305)
. + -....+..|.+|+.+=. .+.-.+-|+.+|..||+.|+.|+...++-..++
T Consensus 413 ~~~~~~~vq~~pgN~~c~Dcg~p~p----tw~S~NLgv~~CIecSGvhRslGvh~SkvrsLt 470 (785)
T KOG0521|consen 413 GISVIEEVQSVPGNAQCCDCGAPEP----TWASINLGVLLCIECSGVHRSLGVHISKVRSLT 470 (785)
T ss_pred CcchhhhhhcCCchhhhhhcCCCCC----chHhhhhchhhHhhccccccccCchhhhhhhhh
Confidence 1 1 01123668999999444 445578899999999999999997666655554
No 68
>KOG2059|consensus
Probab=98.26 E-value=1.6e-06 Score=83.32 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=75.3
Q ss_pred CCceeeeeeecc--------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEE--ccccCCcceeEEEEeCCc
Q psy2207 209 GSQHSGWLHKKS--------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQ 278 (305)
Q Consensus 209 ~~~~~G~L~~~~--------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~--~~~~~~~~~~F~l~~~~~ 278 (305)
++++.|+|..+. ++.+|+|||-|+...|.|.+++.. .|...|||.++..+. .+...+.+++|+|+++.
T Consensus 563 p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~-q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d- 640 (800)
T KOG2059|consen 563 PVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK-QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD- 640 (800)
T ss_pred CceecccceEeccccccchhhhhhhheEEEeccceeEEecCCcc-CcccceeHHHHHHHHHhhhhccCCCceEEEEecC-
Confidence 345555555443 467899999999999999998865 789999998876653 33345677999999887
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207 279 DPLVFGADNEQSYERWMKAMREATTL 304 (305)
Q Consensus 279 ~~~~f~a~s~e~~~~Wi~al~~a~~~ 304 (305)
++.+|.|.+-.+++.|+++|.+.+.+
T Consensus 641 rtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 641 RTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred cceeEecCCchHHHHHHHHHHHHhcc
Confidence 68999999999999999999987754
No 69
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.21 E-value=2.9e-06 Score=63.80 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=32.7
Q ss_pred CcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 8 ~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
+...+|.|.|.|++|+|.|.|+|++|+++|+++|.+
T Consensus 65 d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 65 DAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 455679999999999999999999999999999964
No 70
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.19 E-value=8.1e-06 Score=61.62 Aligned_cols=87 Identities=13% Similarity=0.347 Sum_probs=65.2
Q ss_pred eeeeecc------CCCceEEEEEEECCEEEEEccCcc-----CccceEEEec--CeEEEE-ccccC---CcceeEEEEeC
Q psy2207 214 GWLHKKS------GRNWKRYWFVLKDQVMYKYKASED-----IKALLSIPVL--GYELEA-LNEQD---NFKYVFQLKHQ 276 (305)
Q Consensus 214 G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d-----~~p~~~i~L~--~~~v~~-~~~~~---~~~~~F~l~~~ 276 (305)
|||..+- .+.|+.++++|++..|++|++..- ..|....+|- -..+.. .+..+ +++++|.|...
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg 82 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG 82 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence 6665542 368999999999999999998542 3466666664 333332 22223 67799999987
Q ss_pred Cc-eeEEEEcCCHHHHHHHHHHHHH
Q psy2207 277 GQ-DPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 277 ~~-~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
.. ..++|+.|+..++..|..||..
T Consensus 83 ~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 83 TQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CceeeEEEEecCHHHHHHHHHHHhc
Confidence 77 7899999999999999999974
No 71
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.17 E-value=3.4e-06 Score=63.47 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=32.8
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
.+|.|.|.+++|+|.|+|+|++|+++||++|+..+
T Consensus 64 ~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 64 GPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 57999999999999999999999999999998765
No 72
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.16 E-value=2.4e-05 Score=58.88 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=60.9
Q ss_pred CCCCceeeeeeeccCCCceEEEEEEECC-EEEEEccCccCccceEEEec-CeEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207 207 DSGSQHSGWLHKKSGRNWKRYWFVLKDQ-VMYKYKASEDIKALLSIPVL-GYELEALNEQDNFKYVFQLKHQGQDPLVFG 284 (305)
Q Consensus 207 ~~~~~~~G~L~~~~~~~wkrrw~vL~~~-~L~~y~~~~d~~p~~~i~L~-~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~ 284 (305)
.+.+++.|+|.++.+=..++||++|++. .|+|+..... .-.|.|++. ...+..... ..|.|..+ .++|+|.
T Consensus 10 ge~Il~~g~v~K~kgl~~kkR~liLTd~PrL~Yvdp~~~-~~KGeI~~~~~l~v~~k~~-----~~F~I~tp-~RtY~l~ 82 (104)
T PF14593_consen 10 GELILKQGYVKKRKGLFAKKRQLILTDGPRLFYVDPKKM-VLKGEIPWSKELSVEVKSF-----KTFFIHTP-KRTYYLE 82 (104)
T ss_dssp T--EEEEEEEEEEETTEEEEEEEEEETTTEEEEEETTTT-EEEEEE--STT-EEEECSS-----SEEEEEET-TEEEEEE
T ss_pred CCeEEEEEEEEEeeceEEEEEEEEEccCCEEEEEECCCC-eECcEEecCCceEEEEccC-----CEEEEECC-CcEEEEE
Confidence 4457899999998744489999999976 7777776544 556999996 445554321 27999866 5679888
Q ss_pred cCCHHHHHHHHHHHHHHHc
Q psy2207 285 ADNEQSYERWMKAMREATT 303 (305)
Q Consensus 285 a~s~e~~~~Wi~al~~a~~ 303 (305)
. .+..+..|+++|+++.+
T Consensus 83 d-~~~~A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 83 D-PEGNAQQWVEAIEEVKK 100 (104)
T ss_dssp --TTS-HHHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHH
Confidence 6 45558889999998764
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.14 E-value=2.8e-06 Score=63.48 Aligned_cols=33 Identities=12% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
.+|.|+|.+++|+|.++|+|++|+++||++|+.
T Consensus 65 ~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 65 NVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred CCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 358999999999999999999999999999975
No 74
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.13 E-value=7.6e-06 Score=60.89 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=36.5
Q ss_pred CeeecCCCcCCCceEEEEEec---eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 1 MKVCLPQTEDYNNEFSVIAIS---RSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 1 m~v~~~~~~~~~~~f~i~~~~---ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
|.|....+.+ +++|.|.+.. +++.|+|.|+++|+.|+++|+++|
T Consensus 49 l~i~e~~~~d-~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 49 LMLVEHLPGE-PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred eEEecCCCCC-CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 4455554444 8999998865 799999999999999999999987
No 75
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.07 E-value=6.8e-06 Score=62.06 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
.+|+|.|.+|+|+|.|.|+|++|+++||++|+.
T Consensus 70 ~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 70 QKFSICILTPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred CccEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence 468999999999999999999999999999863
No 76
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.03 E-value=6e-06 Score=61.54 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=35.9
Q ss_pred eecCCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 3 VCLPQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 3 v~~~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
|......+.+++|.|.+++ |+|.|+|+|++|+++||++|+.|
T Consensus 54 v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 54 IESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred EEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 4444445578999999999 99999999999999999999864
No 77
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.00 E-value=4e-05 Score=75.01 Aligned_cols=94 Identities=16% Similarity=0.297 Sum_probs=68.9
Q ss_pred Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccC--ccCccceEEEecC-eEEEEccc-c--CCcceeEEEEeC--
Q psy2207 210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKAS--EDIKALLSIPVLG-YELEALNE-Q--DNFKYVFQLKHQ-- 276 (305)
Q Consensus 210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~--~d~~p~~~i~L~~-~~v~~~~~-~--~~~~~~F~l~~~-- 276 (305)
+.++|||+.-+ .....+|||||.+..|.|||.. .+..|+.+..+.+ +.|.-... . .+--|+|.|+..
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~ 83 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 83 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCCC
Confidence 46999999987 3457899999999999999973 3356777776744 44432111 1 223388888863
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 277 GQDPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 277 ~~~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
..+...|+|-|.+++.+|++||+.|+.
T Consensus 84 ~~~~~~~~a~~~eea~~W~~a~~~a~~ 110 (719)
T PLN00188 84 KYHRITMAAFNIQEALIWKEKIESVID 110 (719)
T ss_pred ccccEEEecCCHHHHHHHHHHHHHHHh
Confidence 334589999999999999999998864
No 78
>KOG3751|consensus
Probab=97.96 E-value=1.8e-05 Score=73.92 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=59.9
Q ss_pred Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceE---EEecCeEEE--Ecccc---CCcceeEEEEeC---
Q psy2207 210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLS---IPVLGYELE--ALNEQ---DNFKYVFQLKHQ--- 276 (305)
Q Consensus 210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~---i~L~~~~v~--~~~~~---~~~~~~F~l~~~--- 276 (305)
+.+.||||.+. ++.|||.||||+..-|||+--.....|... .+|.+-.|. +.... .-.+|+|.|...
T Consensus 317 pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~~~ 396 (622)
T KOG3751|consen 317 PEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNKLR 396 (622)
T ss_pred ccccceeeecccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeecccc
Confidence 57999999998 889999999999999988775544333221 222222222 22211 112355555421
Q ss_pred --CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 277 --GQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 277 --~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
....=+|+||++..+..|+.||+-+
T Consensus 397 ~~~r~lk~lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 397 NKRRFLKMLCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred CcccceeeeecccchhHHHHHHHHHHH
Confidence 1223489999999999999999754
No 79
>KOG0705|consensus
Probab=97.96 E-value=4.3e-06 Score=78.80 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=72.1
Q ss_pred CCcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHHHHHhccccccccc-ccccCCCcccCcCCCCCeeeecCCC
Q psy2207 7 QTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRR-SLTQSSIPELNLGKVAPLWIPDSRV 84 (305)
Q Consensus 7 ~~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~w~~d~~~ 84 (305)
.+++....|.|++ ..-+.+|.|.+-|||++|+++|+.-|...++.-++-+... ...+.+.. .+- ..-....+
T Consensus 440 hndEEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~cessk~Ks~~~sqsea~--a~q----airn~rgn 513 (749)
T KOG0705|consen 440 HNDEEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKSKSRLTSQSEAM--ALQ----AIRNMRGN 513 (749)
T ss_pred CCccccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhhhcchhccchhhhHH--HHH----HHhcCcCC
Confidence 4556667999888 5668899999999999999999998877655433322211 00011100 000 00112346
Q ss_pred cccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 85 SMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 85 ~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
..|.+|+.+-+ .+.-.+.|.++|..||+.|+.|+.
T Consensus 514 ~~c~dc~~~n~----~wAslnlg~l~cieCsgihr~lgt 548 (749)
T KOG0705|consen 514 SHCVDCGTPNP----KWASLNLGVLMCIECSGIHRNLGT 548 (749)
T ss_pred ceeeecCCCCc----ccccccCCeEEEEEchhhhhhhhh
Confidence 78999999554 456678899999999999999875
No 80
>KOG0932|consensus
Probab=97.95 E-value=2.2e-06 Score=80.40 Aligned_cols=93 Identities=25% Similarity=0.411 Sum_probs=67.2
Q ss_pred Cceeeeeeecc------------CCCceEEEEEEECCEEEEEccCccC-ccceE------EEecCeEEEEccccCCccee
Q psy2207 210 SQHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASEDI-KALLS------IPVLGYELEALNEQDNFKYV 270 (305)
Q Consensus 210 ~~~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~d~-~p~~~------i~L~~~~v~~~~~~~~~~~~ 270 (305)
.-++|+|.++. ++.|+..|.+|+|-+||+-+++... ..+.. |.+.-....+..+...++|+
T Consensus 506 ~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY~KKp~V 585 (774)
T KOG0932|consen 506 TYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDYSKKPHV 585 (774)
T ss_pred hhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCcccccCCce
Confidence 35778887654 4579988999999999998865321 11111 22222223344445677899
Q ss_pred EEEEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 271 FQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 271 F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
|+|.....+.|.|+|.+.++|+.||..|.-++
T Consensus 586 f~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA 617 (774)
T KOG0932|consen 586 FKLRTADWRVFLFQAPSQEEMQSWIERINLVA 617 (774)
T ss_pred EEEEeccceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997543
No 81
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.92 E-value=1.6e-05 Score=60.52 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
.++.|+|.++.|+|++.|+|++|+++||++|++
T Consensus 73 ~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 73 FKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 468999999999999999999999999999985
No 82
>KOG0521|consensus
Probab=97.91 E-value=6e-06 Score=82.90 Aligned_cols=92 Identities=21% Similarity=0.477 Sum_probs=74.2
Q ss_pred Cceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207 210 SQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD 286 (305)
Q Consensus 210 ~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~ 286 (305)
....|||+++. .+.|+|+||-..++.+.|+..-.+......++|..+.|...+....+.++|+|+. ..++|+|+|+
T Consensus 274 ~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~drr~CF~iiS-~tks~~lQAe 352 (785)
T KOG0521|consen 274 YRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRDRRFCFEIIS-PTKSYLLQAE 352 (785)
T ss_pred hhhhhhhhhhcccchhhHHhhhhhhhccccccccccccccccccccchhccccCCcccccceeeEEEec-CCcceEEecC
Confidence 35667888776 6789999999988777777655544446778888888887776657789999996 6678999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy2207 287 NEQSYERWMKAMREAT 302 (305)
Q Consensus 287 s~e~~~~Wi~al~~a~ 302 (305)
++.+.+.||.+|+..+
T Consensus 353 s~~d~~~Wi~~i~nsi 368 (785)
T KOG0521|consen 353 SEKDCQDWISALQNSI 368 (785)
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999999999998654
No 83
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.86 E-value=2.4e-05 Score=58.71 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=31.8
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
..+.|.|.++.|+|.|+|+|++|+++||++|+++|
T Consensus 67 ~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 67 RKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred CceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 34679999999999999999999999999999865
No 84
>KOG3543|consensus
Probab=97.85 E-value=3.8e-06 Score=79.84 Aligned_cols=99 Identities=26% Similarity=0.454 Sum_probs=74.4
Q ss_pred CCCCCceeeeeeecc---CCCceEEEEEEECCEEEEEcc----CccCccceEEEecCeEEEEcccc---CCcceeEEEEe
Q psy2207 206 NDSGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKH 275 (305)
Q Consensus 206 ~~~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~----~~d~~p~~~i~L~~~~v~~~~~~---~~~~~~F~l~~ 275 (305)
.+++.-++||||--| .+.|++|||||..-.-|.|.- ++...|...|.|.|++|...++. .++.+.|.-+
T Consensus 460 kp~nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnav- 538 (1218)
T KOG3543|consen 460 KPPNMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAV- 538 (1218)
T ss_pred CCCccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHh-
Confidence 345577999999988 678999999997544443331 33457888999999999854433 3455666665
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHHHcCC
Q psy2207 276 QGQDPLVFGADNEQSYERWMKAMREATTLS 305 (305)
Q Consensus 276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~~~s 305 (305)
..+.+..|+.+++.++.-|++|+-.|+..|
T Consensus 539 kegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 539 KEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred ccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 455679999999999999999998887543
No 85
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.85 E-value=0.00056 Score=51.67 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=63.6
Q ss_pred ceeeeeeecc-CCC-ceEEEEEEECCEEEEEccC---cc-CccceEEEecCeEEEEccccCC------cceeEEEEeCC-
Q psy2207 211 QHSGWLHKKS-GRN-WKRYWFVLKDQVMYKYKAS---ED-IKALLSIPVLGYELEALNEQDN------FKYVFQLKHQG- 277 (305)
Q Consensus 211 ~~~G~L~~~~-~~~-wkrrw~vL~~~~L~~y~~~---~d-~~p~~~i~L~~~~v~~~~~~~~------~~~~F~l~~~~- 277 (305)
+++|-|.+.+ .+. -+.|.+-|=++.|.|-+.. .+ ..-.+.|+|..+.|...++... -.++|.|+...
T Consensus 3 i~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~ 82 (109)
T cd01224 3 FLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSEST 82 (109)
T ss_pred eEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCC
Confidence 4677777665 222 2445666667777777742 22 2346778898888886543321 36899999855
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 278 QDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 278 ~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
+..|.|+|.|.++.++||+||..-.
T Consensus 83 ~~~~~f~~Kt~e~K~~Wm~a~~~er 107 (109)
T cd01224 83 DEWYLFSFKSAERKHRWLSAFALER 107 (109)
T ss_pred CeEEEEEECCHHHHHHHHHHHHHhh
Confidence 5679999999999999999997643
No 86
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=97.84 E-value=1.5e-05 Score=59.19 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=67.7
Q ss_pred CCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeE-EEEccccCCcceeEEEEeCCceeEEEE
Q psy2207 209 GSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYE-LEALNEQDNFKYVFQLKHQGQDPLVFG 284 (305)
Q Consensus 209 ~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~-v~~~~~~~~~~~~F~l~~~~~~~~~f~ 284 (305)
++++.||+.+.| ...|++|||-|=++.|-+|....+.. ...|.+.... |.+.........+..|...++..+++.
T Consensus 2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~-~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt 80 (116)
T cd01240 2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK-PELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVLT 80 (116)
T ss_pred ceEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccC-CcEEEeehhhhcchhheeeccCceEEEEEcCCceEEEe
Confidence 357899999998 67899999999999999976554433 2333333222 221111224446888888888889999
Q ss_pred cCCHHHHHHHHHHHHHHHc
Q psy2207 285 ADNEQSYERWMKAMREATT 303 (305)
Q Consensus 285 a~s~e~~~~Wi~al~~a~~ 303 (305)
++++-...+|...|+.|-+
T Consensus 81 ~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 81 NSDEIELKQWKKELRDAHR 99 (116)
T ss_pred cCCcHHHHHHHHHHHHHHH
Confidence 9999999999999987754
No 87
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.81 E-value=3.2e-05 Score=56.99 Aligned_cols=33 Identities=36% Similarity=0.585 Sum_probs=31.4
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
.++.|+|.+++|.|.|+|+|++|+++|+.+|+.
T Consensus 61 ~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 61 RRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 678999999999999999999999999999975
No 88
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.79 E-value=0.0004 Score=51.64 Aligned_cols=78 Identities=13% Similarity=0.267 Sum_probs=57.5
Q ss_pred eEE-EEEEECCEEEEEcc-CccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 225 KRY-WFVLKDQVMYKYKA-SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 225 krr-w~vL~~~~L~~y~~-~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
++. .|.+.|..++-... .+...-...++|.+..|.-.++.+.-+++|.|.+..+ ++.|+|+|.++..+|++.|++|.
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~~-s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFPE-SRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEEeCCc-cEEEEeCCHHHHHHHHHHHHHHh
Confidence 344 56666655555333 3334456789998888876555556689999986554 69999999999999999999986
Q ss_pred c
Q psy2207 303 T 303 (305)
Q Consensus 303 ~ 303 (305)
+
T Consensus 99 ~ 99 (100)
T cd01226 99 R 99 (100)
T ss_pred c
Confidence 5
No 89
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.78 E-value=3.7e-05 Score=56.23 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=31.6
Q ss_pred CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
.++.|.|.+++ +.|.|+|+|++|+++||.+|+.|
T Consensus 57 ~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 57 DDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 37999999999 99999999999999999999864
No 90
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.78 E-value=5.5e-05 Score=55.82 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=29.8
Q ss_pred CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
-++.|+|.+.. |+|.|.|+|++|+++||++||+
T Consensus 57 ~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 57 DENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 36899997766 9999999999999999999985
No 91
>PLN02866 phospholipase D
Probab=97.78 E-value=0.00028 Score=71.92 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=61.0
Q ss_pred CCceEEEEEEECCEEEEEccCccCccceEEEecC---------eEEEEcccc---CCcceeEEEEeCCceeEEEEcCCHH
Q psy2207 222 RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLG---------YELEALNEQ---DNFKYVFQLKHQGQDPLVFGADNEQ 289 (305)
Q Consensus 222 ~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~---------~~v~~~~~~---~~~~~~F~l~~~~~~~~~f~a~s~e 289 (305)
..|.++|++|+++.|.|...+.+..++..|.+.. ..+...... ....++|.|. .+.+.+.|.+.+..
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~-~~~r~l~l~~~s~~ 294 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVT-CGNRSIRLRTKSSA 294 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEe-cCceEEEEEECCHH
Confidence 4799999999999999998888888777765531 122222111 2345899997 55667999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2207 290 SYERWMKAMREAT 302 (305)
Q Consensus 290 ~~~~Wi~al~~a~ 302 (305)
.+..|+.+|+.+.
T Consensus 295 ~~~~w~~ai~~~~ 307 (1068)
T PLN02866 295 KVKDWVAAINDAG 307 (1068)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 92
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.74 E-value=0.00014 Score=70.04 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=64.0
Q ss_pred CCceeeeeeecc-CCCceEEEEEEECCEEEEEcc--Cc-cCccceEEEe-cCeEEEEcc--ccCCcceeEEEEeCCceeE
Q psy2207 209 GSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKA--SE-DIKALLSIPV-LGYELEALN--EQDNFKYVFQLKHQGQDPL 281 (305)
Q Consensus 209 ~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~--~~-d~~p~~~i~L-~~~~v~~~~--~~~~~~~~F~l~~~~~~~~ 281 (305)
.....|||.+.+ ...|++|||.+.++.+..... +. +......+.+ ....|.+.+ ....++++|.|.....+.+
T Consensus 376 Dv~~~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~ 455 (478)
T PTZ00267 376 DVTHGGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKI 455 (478)
T ss_pred CcccceEEeccCCCcchhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcEE
Confidence 456889999887 556999999998655554432 21 1222223333 122233332 1335678999987666679
Q ss_pred EEEcCCHHHHHHHHHHHHHHHc
Q psy2207 282 VFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 282 ~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
+|.++|++++++||.+|+.|..
T Consensus 456 ~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 456 IAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEecCChHHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 93
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.74 E-value=4.5e-05 Score=56.89 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.8
Q ss_pred CCCceEEEEEece--EEEEEeCCHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISR--SFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 10 ~~~~~f~i~~~~k--sf~~~a~s~~ek~~W~~~i~~ 43 (305)
+.+|+|+|.++.+ .|++.|++ +|+++||+.|+.
T Consensus 63 ~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 63 GRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 6689999999997 88888888 999999999975
No 94
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.73 E-value=6e-05 Score=57.49 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=30.8
Q ss_pred CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
...+.|.|.++.|+|.|.|+|++|+++||.+|.+
T Consensus 73 ~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 73 IFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICK 106 (108)
T ss_pred ccceEEEEEeCCccEEEEECCHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999975
No 95
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.65 E-value=0.00099 Score=50.13 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=62.7
Q ss_pred CceEEEEEEECCEEEEEccCc---cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHH
Q psy2207 223 NWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR 299 (305)
Q Consensus 223 ~wkrrw~vL~~~~L~~y~~~~---d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~ 299 (305)
.-..||++|=+..|++..... .-.-.|.+||.+..|...++....++.|+|..+--....+.|.+.+|+++|+..|+
T Consensus 27 e~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~ 106 (111)
T cd01225 27 EKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLN 106 (111)
T ss_pred ccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHH
Confidence 346678888888887777532 23457889999999997665667789999986654568999999999999999998
Q ss_pred HHH
Q psy2207 300 EAT 302 (305)
Q Consensus 300 ~a~ 302 (305)
+-+
T Consensus 107 ~~~ 109 (111)
T cd01225 107 ANN 109 (111)
T ss_pred hhc
Confidence 643
No 96
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.61 E-value=8.8e-05 Score=55.45 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=35.0
Q ss_pred eecCCCcCCCceEEEEEece--EEEEEeCCHHHHHHHHHHHH
Q psy2207 3 VCLPQTEDYNNEFSVIAISR--SFTLRARSANERLEWIDAIQ 42 (305)
Q Consensus 3 v~~~~~~~~~~~f~i~~~~k--sf~~~a~s~~ek~~W~~~i~ 42 (305)
|...++.+..++|+|.++.| ++.|+|+|+.|+.+||++|.
T Consensus 61 ~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 61 RRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred ccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 34456678889999999999 99999999999999999885
No 97
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.59 E-value=0.0001 Score=57.47 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=34.1
Q ss_pred CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
+.....+.|.|.+++|+|.|.|+|+.++.+|+++|++|
T Consensus 84 ~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 84 DITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 33456789999999999999999999999999999875
No 98
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.56 E-value=0.00021 Score=52.96 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=34.8
Q ss_pred cCCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 9 ~~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ai 45 (305)
.+.+|.|.|.++.+ +|.|.|+|++|+.+|+++|+.++
T Consensus 66 ~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 66 KKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 47899999999997 99999999999999999999886
No 99
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=97.55 E-value=0.00015 Score=55.61 Aligned_cols=38 Identities=32% Similarity=0.580 Sum_probs=30.0
Q ss_pred CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
...-..+.|.|.|+.|+|.|.+++.+|+.+||++|++|
T Consensus 75 ~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 75 FGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 34455678899999999999999999999999999975
No 100
>KOG0248|consensus
Probab=97.53 E-value=6.1e-05 Score=72.46 Aligned_cols=91 Identities=21% Similarity=0.353 Sum_probs=71.4
Q ss_pred CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEec-CeEEEEccccCCcceeEEEEeCCceeEE
Q psy2207 208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVL-GYELEALNEQDNFKYVFQLKHQGQDPLV 282 (305)
Q Consensus 208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~-~~~v~~~~~~~~~~~~F~l~~~~~~~~~ 282 (305)
+....+||+.+.+ .+.|+|||+|++.+...||+.+.+ ..|.+.+++. ++..... +..+.|+++ +....|+
T Consensus 247 e~~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~----~~s~~fqli-~~t~~~~ 321 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ----GAAYAFQLI-TSTDKMN 321 (936)
T ss_pred chhhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc----chhHHhhhh-hhceeEE
Confidence 3356889998877 778999999999999999998765 5788888884 4444332 334689998 4556799
Q ss_pred EEcCCHHHHHHHHHHHHHHHc
Q psy2207 283 FGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 283 f~a~s~e~~~~Wi~al~~a~~ 303 (305)
|.++++-....|+..|+.+++
T Consensus 322 ~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 322 FMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred EeccChhhhhhhHHHHHHHHH
Confidence 999999999999999987764
No 101
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.50 E-value=0.00024 Score=55.62 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=36.5
Q ss_pred eecCCCcCCCceEEEEEec---------------------eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207 3 VCLPQTEDYNNEFSVIAIS---------------------RSFTLRARSANERLEWIDAIQTAIKE 47 (305)
Q Consensus 3 v~~~~~~~~~~~f~i~~~~---------------------ksf~~~a~s~~ek~~W~~~i~~ai~~ 47 (305)
|...++...+++|+|..+. +.|.|+|+|++|+.+||++|+.++..
T Consensus 50 v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 50 IREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred EEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 3444445677899988766 58899999999999999999998864
No 102
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=97.42 E-value=0.00075 Score=49.63 Aligned_cols=80 Identities=23% Similarity=0.398 Sum_probs=55.5
Q ss_pred CCCceEEEEEEE----CCEEEEEcc--CccCccceEEEecCeEEE---EccccCCcceeEEEEeCCceeEEEEcCCHHHH
Q psy2207 221 GRNWKRYWFVLK----DQVMYKYKA--SEDIKALLSIPVLGYELE---ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSY 291 (305)
Q Consensus 221 ~~~wkrrw~vL~----~~~L~~y~~--~~d~~p~~~i~L~~~~v~---~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~ 291 (305)
...|++.-.+|+ |..|.+|-. ++...|...|+...+.-+ ..-+-.++.++|.|...+...|+|.|.|++++
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~ 97 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQL 97 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHH
Confidence 456888777774 344555554 777788777765332111 11122346689999988888899999999999
Q ss_pred HHHHHHHHH
Q psy2207 292 ERWMKAMRE 300 (305)
Q Consensus 292 ~~Wi~al~~ 300 (305)
+.|+..|+.
T Consensus 98 ~SWla~Ir~ 106 (107)
T cd01231 98 NSWLAELRY 106 (107)
T ss_pred HHHHHHHhc
Confidence 999999974
No 103
>KOG1811|consensus
Probab=97.39 E-value=1.3e-05 Score=76.29 Aligned_cols=66 Identities=26% Similarity=0.566 Sum_probs=51.7
Q ss_pred CeeeecC----CCcccc-cccccccccccccccccccceeccCccCCeecccC-CCCccccccHhhHHHHHh
Q psy2207 76 PLWIPDS----RVSMCQ-RCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY-KKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 76 p~w~~d~----~~~~C~-~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~-~~~~~~rvC~~C~~~~~~ 141 (305)
-.|.||. .-..|| .|...|..++|+||||.||...|..|...+-.... ..+.+.++|+.|+..-..
T Consensus 314 ~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psvsia 385 (1141)
T KOG1811|consen 314 HNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSVSIA 385 (1141)
T ss_pred hhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccchhhH
Confidence 3578876 445677 46678999999999999999999999987655443 347899999999966553
No 104
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.28 E-value=0.0079 Score=44.76 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=56.1
Q ss_pred ceeeeeeeccCCCceEEEEEEECCEEEEEccCcc-CccceEEEecCeEEEEccccCCcceeEEEEeCC--ceeEEEEcCC
Q psy2207 211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG--QDPLVFGADN 287 (305)
Q Consensus 211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d-~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~--~~~~~f~a~s 287 (305)
++.|.|...+ .-+.|+.-|=+..|.+-+...+ ..-...|.+.+..+....+ ..++.|.|.+.. ...|.|.|.|
T Consensus 5 lleg~l~~~~--~~~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~--~d~~~F~v~~~~~p~~~~~l~A~s 80 (97)
T cd01222 5 LLEGRFREHG--GGKPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLP--GEPLCFRVIPFDDPKGALQLTARN 80 (97)
T ss_pred eeeceEEeec--CCCceEEEEecccEEEEEecCCeeEEEEEEEecceEEecCCC--CCCcEEEEEecCCCceEEEEEecC
Confidence 4566665433 1123444444555555454333 2334567777777765433 236899997643 2479999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy2207 288 EQSYERWMKAMREAT 302 (305)
Q Consensus 288 ~e~~~~Wi~al~~a~ 302 (305)
.++.+.|+++|+.+.
T Consensus 81 ~e~K~~W~~~i~~~i 95 (97)
T cd01222 81 REEKRIWTQQLKRAM 95 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 105
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.26 E-value=0.00065 Score=52.43 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=37.4
Q ss_pred CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207 6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKE 47 (305)
Q Consensus 6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~ 47 (305)
.+..+.+|.|.|.+++ +.|.|+|.+++|++.||.+|+.+.+.
T Consensus 71 ~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 71 SDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred ccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4566789999999986 99999999999999999999987754
No 106
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=97.22 E-value=0.00023 Score=55.17 Aligned_cols=52 Identities=27% Similarity=0.564 Sum_probs=42.2
Q ss_pred Cccccccccccccc-ccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 84 VSMCQRCTSVFTVT-FRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 84 ~~~C~~C~~~f~~~-~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
...|+.|+.+|+++ ++.+.|..|+..||.+|..+ ..+...-+|..|+....-
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~------~~~~~~WlC~vC~k~rel 106 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY------SKKEPIWLCKVCQKQREL 106 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE------TSSSCCEEEHHHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc------CCCCCCEEChhhHHHHHH
Confidence 46899999999965 78899999999999999987 345677899999887653
No 107
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.22 E-value=0.00035 Score=50.95 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.3
Q ss_pred EEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 18 IAISRSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 18 ~~~~ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
.++.|||.|+|+|+.||.+|+++|++-
T Consensus 67 ~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 67 NKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 458999999999999999999999753
No 108
>KOG0230|consensus
Probab=97.19 E-value=0.00021 Score=74.42 Aligned_cols=54 Identities=39% Similarity=0.795 Sum_probs=43.7
Q ss_pred CCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhccCCC
Q psy2207 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDE 146 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~~~~~ 146 (305)
...+|.+|. +..+|+|||+.||+++|++|... .....|||..|+.........+
T Consensus 4 s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~ 57 (1598)
T KOG0230|consen 4 SSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS-------PETSIRVCNECRGQWEQGNVAP 57 (1598)
T ss_pred cccchhccc---cccccCCCCcccCceeccccCCC-------CccceeehhhhhhhccccCCCC
Confidence 356788888 78899999999999999999933 2338999999999887654443
No 109
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.16 E-value=0.0041 Score=45.08 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=57.8
Q ss_pred ceeeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecC--eEEEEccccCCcceeEEEEeCCceeEEEEcCCH
Q psy2207 211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLG--YELEALNEQDNFKYVFQLKHQGQDPLVFGADNE 288 (305)
Q Consensus 211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~--~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~ 288 (305)
...|.+.++.+=.+++|=++|.+.--.+|=++......|.||+.. ..|.... ...|.|. +.+++|+|. |-+
T Consensus 2 l~~g~v~Kr~glf~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~~l~v~~~~-----~~~F~I~-Tp~rty~le-D~~ 74 (89)
T cd01262 2 LKIGAVKKRKGLFAKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDVELRVEVKN-----SSHFFVH-TPNKVYSFE-DPK 74 (89)
T ss_pred ceeeeeeehhccccceeeEEEecCceEEEEcCCcCeEEeEecccccceEEEEec-----CccEEEE-CCCceEEEE-CCC
Confidence 456777776533568899999865434444455567789999965 3333221 1479886 555678885 556
Q ss_pred HHHHHHHHHHHHHH
Q psy2207 289 QSYERWMKAMREAT 302 (305)
Q Consensus 289 e~~~~Wi~al~~a~ 302 (305)
..+..|+++|.++.
T Consensus 75 ~~a~~W~~~I~~~~ 88 (89)
T cd01262 75 GRASQWKKAIEDLQ 88 (89)
T ss_pred CCHHHHHHHHHHHh
Confidence 88999999998875
No 110
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.15 E-value=0.00064 Score=51.24 Aligned_cols=34 Identities=44% Similarity=0.667 Sum_probs=27.8
Q ss_pred cCCCceEEEE------EeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVI------AISRSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 9 ~~~~~~f~i~------~~~ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
...+|.|.|. +++|+| +|+|++|+++||++|+.+
T Consensus 62 ~~~~~~F~i~~~~~~~~~~r~f--~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 62 RPRPNTFIIRCLQWTTVIERTF--HVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCCcceEEEEeccCCcccCEEE--EeCCHHHHHHHHHHHHhh
Confidence 3456899997 467776 589999999999999865
No 111
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.14 E-value=0.0012 Score=64.09 Aligned_cols=95 Identities=19% Similarity=0.361 Sum_probs=60.5
Q ss_pred Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccCccc-----------------eEE--EecCeEEE-Ecccc---C
Q psy2207 210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIKAL-----------------LSI--PVLGYELE-ALNEQ---D 265 (305)
Q Consensus 210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~~p~-----------------~~i--~L~~~~v~-~~~~~---~ 265 (305)
..+.|++.+.+ ...|+++|+.+.+..+--+....+..|. ..| ++...+-+ +.+.. .
T Consensus 373 ~~~~g~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (496)
T PTZ00283 373 TLYEGIVKKQSSDLSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKYTGS 452 (496)
T ss_pred eeeeeEEecccCCcccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHhhCC
Confidence 46788888776 5569999998863211111111111111 111 33322222 22221 3
Q ss_pred CcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207 266 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304 (305)
Q Consensus 266 ~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~ 304 (305)
+.+|+|.|...+++.+.|.|.++++++.||.+|+.+..+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGI 491 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCC
Confidence 467999999988889999999999999999999988653
No 112
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.14 E-value=0.00082 Score=50.69 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=30.9
Q ss_pred cCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 9 ~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
.+.+|.|.|.++. +.|.|+|+|++|.++|+.+|+.
T Consensus 68 ~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 68 TKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 4667999997655 8999999999999999999974
No 113
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.11 E-value=0.001 Score=47.89 Aligned_cols=34 Identities=44% Similarity=0.687 Sum_probs=31.5
Q ss_pred CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
.++.|.|.+.. +.+.|.|+|++|++.|+.+|+.+
T Consensus 62 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 62 RKNCFEIRTPDGRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred CCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhcC
Confidence 68999999988 99999999999999999999753
No 114
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.09 E-value=0.0069 Score=46.25 Aligned_cols=91 Identities=23% Similarity=0.292 Sum_probs=57.8
Q ss_pred eeeeeeecc--CCCceEEEEEEECCEEEEEccCccC------ccceEEEecCeEEEEcc--cc----CCcceeEEEEeCC
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI------KALLSIPVLGYELEALN--EQ----DNFKYVFQLKHQG 277 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~------~p~~~i~L~~~~v~~~~--~~----~~~~~~F~l~~~~ 277 (305)
.-|.|..+. ...-+.|+.-|=+..|.+-+...+. .-...+.|..+.|...+ +. ....|.|.|.+..
T Consensus 6 ~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~ 85 (116)
T cd01223 6 LDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQ 85 (116)
T ss_pred cCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecC
Confidence 445555554 2234566666656666666644332 11234555666666432 11 1356899999865
Q ss_pred c-eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 278 Q-DPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 278 ~-~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
+ ..|.|+|.|+++...||++|..|.
T Consensus 86 ~~~~~~f~~Ktee~K~kWm~al~~a~ 111 (116)
T cd01223 86 GKTGFTFYFKTEHLRKKWLKALEMAM 111 (116)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHHH
Confidence 3 569999999999999999999885
No 115
>KOG1117|consensus
Probab=97.08 E-value=0.00022 Score=70.37 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=74.5
Q ss_pred CCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207 209 GSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA 285 (305)
Q Consensus 209 ~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a 285 (305)
+++++|||.|.. ...++++|.-+.+..+.||.++++..+.+.|++.....+.. .+...|+++ ++.++|.|++
T Consensus 86 p~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~~i~va~is~v~~----~gd~kfevi-tn~r~fvfr~ 160 (1186)
T KOG1117|consen 86 PVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKGPIPVAAISAVRN----FGDNKFEVI-TNQRTFVFRQ 160 (1186)
T ss_pred chhhcchhhccCcCcccccCccceecCCCCccccCCCCCCCCCCceeeehhhhhhh----ccCceEEEE-ecceEEEEec
Confidence 368999999987 45689999999999999999999999999999976655433 223579998 5677899999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy2207 286 DNEQSYERWMKAMREAT 302 (305)
Q Consensus 286 ~s~e~~~~Wi~al~~a~ 302 (305)
+++.+...|+..++.+.
T Consensus 161 e~~~~r~~w~s~l~s~~ 177 (1186)
T KOG1117|consen 161 ESEGERFIWVSPLQSAL 177 (1186)
T ss_pred CCcccceeeechhhhcc
Confidence 99999999999998764
No 116
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.07 E-value=0.0016 Score=47.28 Aligned_cols=36 Identities=39% Similarity=0.654 Sum_probs=33.4
Q ss_pred CCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 10 ~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ai 45 (305)
...+.|.|..+.+ .+.|.|+|++|+.+|+++|+.++
T Consensus 65 ~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 65 KKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 4689999999999 99999999999999999999875
No 117
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.96 E-value=0.00033 Score=49.69 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=59.3
Q ss_pred eeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEE-------cccc-CCcceeEEEEeCCceeEEEE
Q psy2207 213 SGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-------LNEQ-DNFKYVFQLKHQGQDPLVFG 284 (305)
Q Consensus 213 ~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~-------~~~~-~~~~~~F~l~~~~~~~~~f~ 284 (305)
.||||......-++|+.+|++..+.+|..... ..+.++.|....+.. ...+ .-..|+|-.+...++...+-
T Consensus 1 EGYLY~~E~~si~rRF~~L~~K~~~~~~~KGG-~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~~~~F 79 (104)
T PF15408_consen 1 EGYLYRDEDSSIQRRFVMLRSKQFNMYEDKGG-QYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRHVQCF 79 (104)
T ss_pred CCeEEEeccchHHHHHHhhhhceeEEecccCC-ceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcchhhhh
Confidence 48999877667788999999999999886543 334444443222221 1111 12235677776777778888
Q ss_pred cCCHHHHHHHHHHHHH
Q psy2207 285 ADNEQSYERWMKAMRE 300 (305)
Q Consensus 285 a~s~e~~~~Wi~al~~ 300 (305)
|++.+.++.|++++.+
T Consensus 80 A~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 80 ASSKKVCQSWIQVMNS 95 (104)
T ss_pred hhHHHHHHHHHHHhcC
Confidence 9999999999999963
No 118
>KOG1739|consensus
Probab=96.93 E-value=0.0013 Score=61.17 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=68.1
Q ss_pred CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCc--cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207 208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE--DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF 283 (305)
Q Consensus 208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~--d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f 283 (305)
+....+|+|-+-. -..|+-||++|+.+.|.||+++. +....|.|.|....+..-+.+ ...|-|... ...+++
T Consensus 22 gw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEfD---e~rfdIsvn-~nv~~l 97 (611)
T KOG1739|consen 22 GWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEFD---ECRFDISVN-DNVWYL 97 (611)
T ss_pred CchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccch---hheeeeEec-cceeee
Confidence 3345777776654 56799999999999999999854 467789999976655543322 246888754 556899
Q ss_pred EcCCHHHHHHHHHHHHHH
Q psy2207 284 GADNEQSYERWMKAMREA 301 (305)
Q Consensus 284 ~a~s~e~~~~Wi~al~~a 301 (305)
.+.+.+..+.|+++|...
T Consensus 98 ra~~~~hr~~w~d~L~wm 115 (611)
T KOG1739|consen 98 RAQDPDHRQQWIDALEWM 115 (611)
T ss_pred hhcCcHHHHHHHHHHHHH
Confidence 999999999999999743
No 119
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.89 E-value=0.0027 Score=47.96 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=30.5
Q ss_pred CCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 10 ~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
...|+|.|.... +.|.|+|.|++||..|+++|..
T Consensus 70 ~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 70 TIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred eeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 458999999976 7899999999999999999864
No 120
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=96.87 E-value=0.0025 Score=49.48 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=32.7
Q ss_pred cCCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 5 LPQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 5 ~~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
..+..+.+|.|.|.+++ ..|-|+|.+++|+.+||+.|+-+
T Consensus 77 a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 77 ASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp ETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred CcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 35667889999999975 79999999999999999999864
No 121
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.87 E-value=0.0015 Score=50.71 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCceEEEE------EeceEEEEEeCCHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVI------AISRSFTLRARSANERLEWIDAIQ 42 (305)
Q Consensus 10 ~~~~~f~i~------~~~ksf~~~a~s~~ek~~W~~~i~ 42 (305)
..+|.|.|. +..+.+.|+|+|++||..||++|.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 578999995 899999999999999999999884
No 122
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.86 E-value=0.0022 Score=48.93 Aligned_cols=38 Identities=18% Similarity=0.435 Sum_probs=34.7
Q ss_pred CCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKE 47 (305)
Q Consensus 10 ~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai~~ 47 (305)
+..|+|.|...+ -.|.|+|.|++||+.||++|..|+++
T Consensus 74 ~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 74 RWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred ceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 588999999977 58999999999999999999999875
No 123
>PF15406 PH_6: Pleckstrin homology domain
Probab=96.83 E-value=0.0039 Score=46.59 Aligned_cols=68 Identities=13% Similarity=0.293 Sum_probs=44.7
Q ss_pred EEEEECCEEEEEc-cCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207 228 WFVLKDQVMYKYK-ASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 228 w~vL~~~~L~~y~-~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
|..-.|.-|.+|. .+....|.|.|+|....-... +...+|.|.+ .+ ..+.|.|.+..+++.|+.+|+.
T Consensus 43 wAsqTGKGLLF~~K~~dka~P~GiinLadase~~~--~g~~kF~f~~--~G-~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 43 WASQTGKGLLFFSKAEDKASPSGIINLADASEPEK--DGSNKFHFKI--KG-HKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred hhhccCceEEEEeccccccCCcceEehhhcccccc--CCCceEEEEe--CC-ceeeeecCCHHHhccHHHHhhc
Confidence 4444565555555 444468999999965433222 1233455555 44 4599999999999999999963
No 124
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.75 E-value=0.0018 Score=50.35 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=28.4
Q ss_pred cCCCceEEEEE-------------------eceEEE-EEeCCHHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIA-------------------ISRSFT-LRARSANERLEWIDAIQTA 44 (305)
Q Consensus 9 ~~~~~~f~i~~-------------------~~ksf~-~~a~s~~ek~~W~~~i~~a 44 (305)
-..+|+|.|.. ..|+|+ |+|+|++|+++|+++|++|
T Consensus 67 c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 67 CARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 35788999954 235555 6899999999999999864
No 125
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.68 E-value=0.0088 Score=43.74 Aligned_cols=80 Identities=15% Similarity=0.307 Sum_probs=51.0
Q ss_pred eeeeeeecc-CCCceEEEEEEECCEEEEEccC-------ccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207 212 HSGWLHKKS-GRNWKRYWFVLKDQVMYKYKAS-------EDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF 283 (305)
Q Consensus 212 ~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~-------~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f 283 (305)
..|+|.+.. ++.=.|..|-+.| .|.|-+-. ........|||.+..+... .|.+..+++++|.|
T Consensus 5 ~eg~lvel~~~~rK~R~~FLFnD-lLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~~~~~~~KSf~~ 75 (96)
T cd01228 5 KDSFLVELVEGSRKLRHLFLFTD-VLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFRIHNKNGKSYTF 75 (96)
T ss_pred ccceeeeehhCCCcceEEEeecc-EEEEEEeeeccCccccccceeEEEEhHHheecch--------hhhccccCCceEEE
Confidence 456776655 2232344444444 34333321 2233456788887666433 26666777889999
Q ss_pred EcCCHHHHHHHHHHHHH
Q psy2207 284 GADNEQSYERWMKAMRE 300 (305)
Q Consensus 284 ~a~s~e~~~~Wi~al~~ 300 (305)
.|.|..|..+|+++|.+
T Consensus 76 ~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 76 LLSSDYERSEWRESIQK 92 (96)
T ss_pred EecCHHHHHHHHHHHHH
Confidence 99999999999999975
No 126
>KOG1738|consensus
Probab=96.64 E-value=0.00031 Score=67.39 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=52.4
Q ss_pred Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEE
Q psy2207 210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQL 273 (305)
Q Consensus 210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l 273 (305)
-...|||++++ ...|++.||||.+..||.|.++++..+.+.|.|.+++|....+-.+.+..|..
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e~~~~~~~~~~ 630 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEEVLGKPELTGE 630 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHHhccCHhhhcc
Confidence 35788999887 45799999999999999999999999999999999999876554444444443
No 127
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.57 E-value=0.0038 Score=47.93 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=28.4
Q ss_pred CceEEE--EEec---eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSV--IAIS---RSFTLRARSANERLEWIDAIQTAIK 46 (305)
Q Consensus 12 ~~~f~i--~~~~---ksf~~~a~s~~ek~~W~~~i~~ai~ 46 (305)
+..|.| .++. .+|.|+|.|.++|++|+..|.+.++
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 445666 4454 7999999999999999999998764
No 128
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.53 E-value=0.0052 Score=44.42 Aligned_cols=35 Identities=37% Similarity=0.658 Sum_probs=31.9
Q ss_pred CCCceEEEEEe---ceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAI---SRSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 10 ~~~~~f~i~~~---~ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
..++.|.|... .+.+.|.|+|++|++.|+++|+++
T Consensus 62 ~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 62 DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 46799999998 799999999999999999999863
No 129
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.45 E-value=0.078 Score=41.30 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=56.8
Q ss_pred eeeeeecc-C------CCceEEEEEEEC--CEEEEEccCcc-C----ccceEEEecCeEEEEcccc-C------CcceeE
Q psy2207 213 SGWLHKKS-G------RNWKRYWFVLKD--QVMYKYKASED-I----KALLSIPVLGYELEALNEQ-D------NFKYVF 271 (305)
Q Consensus 213 ~G~L~~~~-~------~~wkrrw~vL~~--~~L~~y~~~~d-~----~p~~~i~L~~~~v~~~~~~-~------~~~~~F 271 (305)
..||+|-. . +...+|||-|.. ..|++...... . .-...+.|.....+.+... . ...++|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 34777755 2 378899999975 67777764321 1 1224466655444432211 1 134677
Q ss_pred EEEeCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207 272 QLKHQGQDPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 272 ~l~~~~~~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
.|. +..+.+.|.|+|.++.+-|+.+|+-
T Consensus 92 ~i~-t~~R~L~l~a~s~~~~~~W~~aL~~ 119 (123)
T PF12814_consen 92 IIV-TPDRSLDLTAPSRERHEIWFNALRY 119 (123)
T ss_pred EEE-cCCeEEEEEeCCHHHHHHHHHHHHH
Confidence 776 5667899999999999999999974
No 130
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.41 E-value=0.029 Score=43.63 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=28.0
Q ss_pred CcceeEEEEe-----CCceeEEEEcCCHHHHHHHHHHHH
Q psy2207 266 NFKYVFQLKH-----QGQDPLVFGADNEQSYERWMKAMR 299 (305)
Q Consensus 266 ~~~~~F~l~~-----~~~~~~~f~a~s~e~~~~Wi~al~ 299 (305)
..++.|.|.. .....+.|.|+|+.++.+||+||.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 3578999963 344679999999999999999984
No 131
>KOG4236|consensus
Probab=96.40 E-value=0.0025 Score=60.64 Aligned_cols=94 Identities=16% Similarity=0.286 Sum_probs=62.8
Q ss_pred CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEE-EEcc-----ccCCcceeEEEEeCCce
Q psy2207 208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALN-----EQDNFKYVFQLKHQGQD 279 (305)
Q Consensus 208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v-~~~~-----~~~~~~~~F~l~~~~~~ 279 (305)
......||+-.-. ...-+|.|.-|....+..|.++....--..|||..+.- .... .....+|+|+|.+.. .
T Consensus 411 st~~kEGWmvHyt~~d~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~-~ 489 (888)
T KOG4236|consen 411 STKLKEGWMVHYTSKDNLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT-T 489 (888)
T ss_pred hhhhhcceEEEEechhhhhhhhhheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee-E
Confidence 3356788875433 11224445567788899999888777778899865433 3222 224567999998655 3
Q ss_pred eEEEEcCC------------HHHHHHHHHHHHHHHc
Q psy2207 280 PLVFGADN------------EQSYERWMKAMREATT 303 (305)
Q Consensus 280 ~~~f~a~s------------~e~~~~Wi~al~~a~~ 303 (305)
.+|-.++ .+.++.|-.||+.|.+
T Consensus 490 -vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 490 -VYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred -EEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 4555566 6779999999998764
No 132
>PF15404 PH_4: Pleckstrin homology domain
Probab=96.38 E-value=0.045 Score=45.59 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=35.4
Q ss_pred eeeeeeecc--CCCceEEEEEEECCEEEEEccCcc-----------CccceEEEecCeEE
Q psy2207 212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYEL 258 (305)
Q Consensus 212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d-----------~~p~~~i~L~~~~v 258 (305)
++|+|+.+. ...|+++++||.++.|..|+.-.. ..-..+|+|.+|-|
T Consensus 1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYv 60 (185)
T PF15404_consen 1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYV 60 (185)
T ss_pred CCceeeecCCCCCCceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceE
Confidence 479999887 678999999999999999986221 11235688877655
No 133
>KOG1451|consensus
Probab=96.30 E-value=0.011 Score=56.48 Aligned_cols=92 Identities=16% Similarity=0.370 Sum_probs=63.4
Q ss_pred CCCCceeeeeeecc----CCCceEEEEEEEC--CE--EEEEccC--ccCccceEEEecCeEEEEccccCCcceeEEEEeC
Q psy2207 207 DSGSQHSGWLHKKS----GRNWKRYWFVLKD--QV--MYKYKAS--EDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQ 276 (305)
Q Consensus 207 ~~~~~~~G~L~~~~----~~~wkrrw~vL~~--~~--L~~y~~~--~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~ 276 (305)
+.++++.||||.+. ++.|-++||+... .. +.-+... .+..+..++.|..|.-...+ ..++.|+|-|...
T Consensus 262 p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktd-SIdKRFCFDve~~ 340 (812)
T KOG1451|consen 262 PTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTD-SIDKRFCFDVEVE 340 (812)
T ss_pred CCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCccc-ccccceeeeeeec
Confidence 44578999999987 7899999999853 22 2222221 12345566777766554443 3456799999753
Q ss_pred C-ceeEEEEcCCHHHHHHHHHHHH
Q psy2207 277 G-QDPLVFGADNEQSYERWMKAMR 299 (305)
Q Consensus 277 ~-~~~~~f~a~s~e~~~~Wi~al~ 299 (305)
. ..+..++|-+++++..||+|+.
T Consensus 341 erpgviTmQALSE~drrlWmeAMD 364 (812)
T KOG1451|consen 341 ERPGVITMQALSEKDRRLWMEAMD 364 (812)
T ss_pred ccCCeeehHhhhhhHHHHHHHHhc
Confidence 2 2368999999999999999985
No 134
>KOG0930|consensus
Probab=96.29 E-value=0.0076 Score=52.57 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=38.6
Q ss_pred eecCCCcCCCceEEEEEece----------------------EEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207 3 VCLPQTEDYNNEFSVIAISR----------------------SFTLRARSANERLEWIDAIQTAIKE 47 (305)
Q Consensus 3 v~~~~~~~~~~~f~i~~~~k----------------------sf~~~a~s~~ek~~W~~~i~~ai~~ 47 (305)
|...+++..||+|+|..|+- .|.++|.++|||++||+.|+.+|..
T Consensus 311 ir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 311 IREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred eeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 56778889999999887543 6788999999999999999999874
No 135
>KOG3723|consensus
Probab=96.20 E-value=0.0021 Score=61.11 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=64.3
Q ss_pred Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccCc-cCccceEEEecCeEEEE--c--cccCCcceeEEEEeCCce
Q psy2207 210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASE-DIKALLSIPVLGYELEA--L--NEQDNFKYVFQLKHQGQD 279 (305)
Q Consensus 210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~-d~~p~~~i~L~~~~v~~--~--~~~~~~~~~F~l~~~~~~ 279 (305)
+++.|-|..++ .+.|+-+||.|.+..|.|-+... +..-...|+|..++.+. . .....-+-.|+|.+.. .
T Consensus 735 p~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD-~ 813 (851)
T KOG3723|consen 735 PLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-K 813 (851)
T ss_pred chhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecC-c
Confidence 47889887665 57899999999999998866432 22222567775443321 1 1122334689998555 5
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 280 PLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 280 ~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
+|++.|.++..+++|++.|.-|.
T Consensus 814 T~ILKaKDeKNAEEWlqCL~Iav 836 (851)
T KOG3723|consen 814 TYILKAKDEKNAEEWLQCLNIAV 836 (851)
T ss_pred eEEeecccccCHHHHHHHHHHHH
Confidence 69999999999999999997554
No 136
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.14 E-value=0.014 Score=43.81 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCCceEEEEEec----eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAIS----RSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 10 ~~~~~f~i~~~~----ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
...+.|.|.+|. |.|.|.++|++++..||+++.-|.
T Consensus 64 ~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 64 QQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS 103 (106)
T ss_pred ccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence 456889999888 999999999999999999997654
No 137
>KOG1841|consensus
Probab=95.82 E-value=0.0037 Score=63.71 Aligned_cols=57 Identities=30% Similarity=0.459 Sum_probs=49.5
Q ss_pred CCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 73 ~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
+.+++|++|..++.|+.|.++|..+.++|||| |.++ +-+.+.+..|+|..|......
T Consensus 646 e~ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~~~s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 646 EVKSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LLYSSRKEARPCNITHSVLRN 702 (1287)
T ss_pred eecceeccCCcCCCceecccceeeeccccccc--cccc----------ccccccccCCCCcccCccchh
Confidence 67899999999999999999999999999999 6665 555677888999988877764
No 138
>KOG3727|consensus
Probab=95.53 E-value=0.0013 Score=62.35 Aligned_cols=83 Identities=31% Similarity=0.471 Sum_probs=56.1
Q ss_pred CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccC---CcceeEEEEeCCceeEEEEcCCHHHHHHHH
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQD---NFKYVFQLKHQGQDPLVFGADNEQSYERWM 295 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~---~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi 295 (305)
.+..+|.||...+-.+.+|++..+ ..|...|.+.||.|.++.... ...+...+.-++...++++|+++++..+||
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WM 451 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSRGAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWM 451 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhcCCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHH
Confidence 445566666555444444443222 678889999999988654332 223444444466677999999999999999
Q ss_pred HHHHHHHc
Q psy2207 296 KAMREATT 303 (305)
Q Consensus 296 ~al~~a~~ 303 (305)
+|-+.|++
T Consensus 452 AaCrLASK 459 (664)
T KOG3727|consen 452 AACRLASK 459 (664)
T ss_pred HHhhHhhc
Confidence 99998875
No 139
>KOG0703|consensus
Probab=95.49 E-value=0.0062 Score=53.71 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=32.7
Q ss_pred CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK 124 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~ 124 (305)
++..|++|+.+ ..++.--+.|..||.+|++.|+.|+..
T Consensus 24 ~N~~CADC~a~----~P~WaSwnlGvFiC~~C~giHR~lg~h 61 (287)
T KOG0703|consen 24 DNKVCADCGAK----GPRWASWNLGVFICLRCAGIHRSLGVH 61 (287)
T ss_pred ccCcccccCCC----CCCeEEeecCeEEEeecccccccccch
Confidence 37899999995 566777899999999999999999853
No 140
>KOG3549|consensus
Probab=95.46 E-value=0.044 Score=49.37 Aligned_cols=92 Identities=17% Similarity=0.336 Sum_probs=67.4
Q ss_pred CCCceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccceEEEecCe-----------EEE-EccccCCccee
Q psy2207 208 SGSQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY-----------ELE-ALNEQDNFKYV 270 (305)
Q Consensus 208 ~~~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~-----------~v~-~~~~~~~~~~~ 270 (305)
+.+++-||...+- ...++.++..|+|..+|.|..+. ..+.+..-+ .|. -.+..+.++++
T Consensus 279 ~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPP----v~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~C 354 (505)
T KOG3549|consen 279 EQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPP----VNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHC 354 (505)
T ss_pred ceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCC----cchhhhhhhhhhHHHHHHHHHHhccccccccccce
Confidence 3467889997654 44568899999999999998764 222222111 111 12233678899
Q ss_pred EEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 271 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 271 F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
|.|...++...+|..|...++.+|-.+++.|+-
T Consensus 355 F~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 355 FLLQSSGGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred EEEEcCCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 999988888899999999999999999988864
No 141
>KOG0230|consensus
Probab=95.23 E-value=0.0068 Score=63.64 Aligned_cols=34 Identities=41% Similarity=1.100 Sum_probs=33.1
Q ss_pred eecCCCcccccccccccccccccccccccceeccCc
Q psy2207 79 IPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPC 114 (305)
Q Consensus 79 ~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~C 114 (305)
+||+.+..|-.|.+.|...+|+||| ||.++|..|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 7899999999999999999999999 999999999
No 142
>KOG0248|consensus
Probab=95.17 E-value=0.04 Score=53.74 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=64.5
Q ss_pred ceeeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecCe----EEEEcccc------C----CcceeEEEEe-
Q psy2207 211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY----ELEALNEQ------D----NFKYVFQLKH- 275 (305)
Q Consensus 211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~----~v~~~~~~------~----~~~~~F~l~~- 275 (305)
..+|||.+.+...-++.|+.|.+..++||++..|..|++.+++... .+....++ . ...|+.-+++
T Consensus 359 ~~~GwlT~vk~g~skkv~~alv~~~~~~~k~~~d~rp~g~l~~~~~h~~ee~~s~~sde~~e~~~~r~l~~~~~~l~~~~ 438 (936)
T KOG0248|consen 359 SISGWLTRVKCGLSKKVFAALVNQKLMFFKNSNDLVPNGFLCLQEKHNGTEEYSGSSDEQLETTKEHPQRKNNDSLCVQI 438 (936)
T ss_pred CcCcceeeeccccceeeeeeeeeeeeEEeecccccccccccchhhhhcceeeccCCchhhhhhhcCccccccCceEEecc
Confidence 4789998887445688999999999999999999999998887322 11111110 1 1124444444
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 276 QGQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
.++..|++...+.++...|+-.+..|+
T Consensus 439 ~~~~p~yLi~~t~e~k~~wly~l~~A~ 465 (936)
T KOG0248|consen 439 ANEDPVYLILRTSEDKEKWLYYLKSAS 465 (936)
T ss_pred CCCCCEEEEeeeccccceeeeeehhhc
Confidence 455678888889999999988877664
No 143
>PF15409 PH_8: Pleckstrin homology domain
Probab=94.93 E-value=0.049 Score=39.74 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
+....|.|.+-...|.|-|.|++|.+.|+.+|+.|
T Consensus 54 ~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 54 KKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 45679999999999999999999999999999875
No 144
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.65 E-value=0.74 Score=35.30 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=37.3
Q ss_pred eEEEecCeEEEEccccCCcceeEEEEeCCc----eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 249 LSIPVLGYELEALNEQDNFKYVFQLKHQGQ----DPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 249 ~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~----~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
..|++....+....+. .+..|+|..... ..|.+.|.|.+..+.|+..|++..
T Consensus 57 ~~ikls~l~l~e~v~g--d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 57 SKLQVSKMGLTEHVEG--DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred cceeeeeeEeEEccCC--CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 4566766666544333 345677765332 579999999999999999998764
No 145
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.62 E-value=0.086 Score=39.81 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=35.2
Q ss_pred cCCCcCCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 5 LPQTEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 5 ~~~~~~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
..+..+.|.-|+|.... ++..|-|+|+.||+.|+.+|-.-|
T Consensus 68 ~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 68 RADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred ecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 34566789999999966 899999999999999999997655
No 146
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.58 E-value=0.071 Score=40.27 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=33.3
Q ss_pred CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
.+++..+|+|+|.++- =...+...+++|..+|++.|++-
T Consensus 69 Ed~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 69 EDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred HhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence 4567889999999976 46778999999999999999863
No 147
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=94.56 E-value=0.016 Score=52.45 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=32.4
Q ss_pred cCCCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
+.++..|++|+.+- ..|---+-|.++|.+|++.|+.|+.
T Consensus 17 ~~~Nk~CaDCga~~----P~W~S~nlGvfiCi~CagvHRsLGv 55 (319)
T COG5347 17 DSSNKKCADCGAPN----PTWASVNLGVFLCIDCAGVHRSLGV 55 (319)
T ss_pred ccccCccccCCCCC----CceEecccCeEEEeecchhhhcccc
Confidence 44577899999955 4566678899999999999999986
No 148
>KOG3551|consensus
Probab=94.53 E-value=0.12 Score=47.35 Aligned_cols=88 Identities=16% Similarity=0.395 Sum_probs=60.3
Q ss_pred eeeeeeecc----CCCceEEEEEEECCEEEEEccCcc-----CccceEEEecCeEEEEcccc-----CCcceeEEEEeC-
Q psy2207 212 HSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED-----IKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQ- 276 (305)
Q Consensus 212 ~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d-----~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~- 276 (305)
+-|||..+- .+.|+..+.+|....|.+|.+-.- ..|..+.+|....++-.... .+....|.+.+.
T Consensus 294 HiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGT 373 (506)
T KOG3551|consen 294 HIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGT 373 (506)
T ss_pred hhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEeccc
Confidence 456665543 457999999999988888887321 45677777755444432221 122357887753
Q ss_pred --CceeEEEEcCCHHHHHHHHHHHH
Q psy2207 277 --GQDPLVFGADNEQSYERWMKAMR 299 (305)
Q Consensus 277 --~~~~~~f~a~s~e~~~~Wi~al~ 299 (305)
+-.+|.|+.||..++..|...|-
T Consensus 374 rqGV~thlfrvEThrdLa~WtRslV 398 (506)
T KOG3551|consen 374 RQGVETHLFRVETHRELAAWTRSLV 398 (506)
T ss_pred ccceEEEEEEeccHHHHHHHHHHHH
Confidence 33589999999999999998884
No 149
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.50 E-value=0.15 Score=40.15 Aligned_cols=38 Identities=13% Similarity=0.402 Sum_probs=31.8
Q ss_pred CceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKENE 49 (305)
Q Consensus 12 ~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai~~~~ 49 (305)
+..|+|-+.. -.|.|+|.|++.|+.|++.|.+.+.+..
T Consensus 80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQL 119 (133)
T ss_pred ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 5678887744 4999999999999999999999887643
No 150
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.12 E-value=0.12 Score=39.62 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=32.6
Q ss_pred CCCcCCCceEEEEEe-------ceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 6 PQTEDYNNEFSVIAI-------SRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 6 ~~~~~~~~~f~i~~~-------~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
.+..+.|.-|+|.+. ..+..|-|+|+.||+.|+.+|++
T Consensus 73 a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~ 117 (122)
T cd01243 73 ASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSE 117 (122)
T ss_pred cCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence 455678899999984 47899999999999999999876
No 151
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.68 E-value=0.69 Score=35.39 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=28.3
Q ss_pred ceeEEEEeCCc---eeEEEEcCCHHHHHHHHHHHHH
Q psy2207 268 KYVFQLKHQGQ---DPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 268 ~~~F~l~~~~~---~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
..+|.|++... ..+.|-|+|.++++.|+..|..
T Consensus 79 ~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 79 ERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 47999998664 6789999999999999999863
No 152
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=93.52 E-value=0.19 Score=39.09 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=32.1
Q ss_pred CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
+.++|.|.+++|+.-|.|++.++.+-|+.+|+--+
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999998543
No 153
>KOG4424|consensus
Probab=93.52 E-value=0.17 Score=48.68 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=59.6
Q ss_pred Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCc-----cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEE
Q psy2207 210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE-----DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLV 282 (305)
Q Consensus 210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~-----d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~ 282 (305)
.+.+|-|+|.. ...-..||++|=...|.|-.... ...+...+.+.+..|.... ....+++|.|. ...+...
T Consensus 272 LiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~-~~~~~~tF~~~-G~~r~ve 349 (623)
T KOG4424|consen 272 LIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDD-NEELPHTFILT-GKKRGVE 349 (623)
T ss_pred HhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccc-cccCCceEEEe-cccceEE
Confidence 46889998887 45677888777443332222111 1122334444555554332 23457899997 4566799
Q ss_pred EEcCCHHHHHHHHHHHHHHH
Q psy2207 283 FGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 283 f~a~s~e~~~~Wi~al~~a~ 302 (305)
|.|.|+++.+.|+++|+.|+
T Consensus 350 l~a~t~~ek~eWv~~I~~~I 369 (623)
T KOG4424|consen 350 LQARTEQEKKEWVQAIQDAI 369 (623)
T ss_pred eecCchhhHHHHHHHHHHHH
Confidence 99999999999999998775
No 154
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=93.52 E-value=0.55 Score=37.19 Aligned_cols=36 Identities=22% Similarity=0.550 Sum_probs=25.9
Q ss_pred CcceeEEEEeCCce--eEEEEcCCHHHHHHHHHHHHHH
Q psy2207 266 NFKYVFQLKHQGQD--PLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 266 ~~~~~F~l~~~~~~--~~~f~a~s~e~~~~Wi~al~~a 301 (305)
...|.|.+.|-+.. .|.|.|+|+.+++.|++.|.++
T Consensus 97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 44577888775543 4799999999999999999875
No 155
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=93.32 E-value=0.024 Score=43.43 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=31.1
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
+..|++|+.+ ...+-+.+-|..+|..|++.|+.|+.
T Consensus 3 N~~CaDC~~~----~p~w~s~~~GifvC~~CsgiHR~lg~ 38 (112)
T smart00105 3 NKKCFDCGAP----NPTWASVNLGVFLCIECSGIHRSLGV 38 (112)
T ss_pred CCcccCCCCC----CCCcEEeccceeEhHHhHHHHHhcCC
Confidence 6789999994 45677889999999999999999974
No 156
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=93.22 E-value=0.23 Score=39.34 Aligned_cols=24 Identities=38% Similarity=0.655 Sum_probs=20.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207 21 SRSFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 21 ~ksf~~~a~s~~ek~~W~~~i~~a 44 (305)
..+|+|+|+|+.+|++|++.|+++
T Consensus 111 ~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 111 GYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhc
Confidence 457999999999999999999865
No 157
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=93.15 E-value=1.7 Score=34.34 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=53.8
Q ss_pred ceEEEEEEECCEEEEEccCccC----------------cc---ceEEEecCeEEEEcccc-CCcceeEEEEeC-------
Q psy2207 224 WKRYWFVLKDQVMYKYKASEDI----------------KA---LLSIPVLGYELEALNEQ-DNFKYVFQLKHQ------- 276 (305)
Q Consensus 224 wkrrw~vL~~~~L~~y~~~~d~----------------~p---~~~i~L~~~~v~~~~~~-~~~~~~F~l~~~------- 276 (305)
-.-.-||++..++.+|+..... .| ...||+....|...... ....+.++|+|.
T Consensus 49 ~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egR 128 (160)
T cd01255 49 LELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGR 128 (160)
T ss_pred ceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccCC
Confidence 3445678888888888853221 11 12466666666643322 234589999984
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 277 GQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 277 ~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
.+++|.|++.+.|..+..+..|+...
T Consensus 129 pE~vfqLCcS~~E~k~~flK~Irsil 154 (160)
T cd01255 129 PEKVFVLCCSTAESRNAFLKTIRSIL 154 (160)
T ss_pred CcceEEEecCCHHHHHHHHHHHHHHH
Confidence 34589999999999999999998654
No 158
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=93.13 E-value=0.018 Score=44.44 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 82 SRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 82 ~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
..+..|++|+.+.+ .+-+-+-|..+|..|++.|+.|+.
T Consensus 11 ~~N~~CaDCg~~~p----~w~s~~~GiflC~~Cag~HR~lg~ 48 (116)
T PF01412_consen 11 PGNKVCADCGAPNP----TWASLNYGIFLCLECAGIHRSLGV 48 (116)
T ss_dssp TTCTB-TTT-SBS------EEETTTTEEE-HHHHHHHHHHTT
T ss_pred cCcCcCCCCCCCCC----CEEEeecChhhhHHHHHHHHHhcc
Confidence 44679999998554 677788899999999999999974
No 159
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=93.08 E-value=0.19 Score=37.13 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISR-SFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 10 ~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ 43 (305)
+..|+|.|...+. .|.|.|.++++++.|+..|+.
T Consensus 72 D~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 72 DNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred CcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3569999988554 788999999999999999975
No 160
>PF15406 PH_6: Pleckstrin homology domain
Probab=92.83 E-value=0.17 Score=37.92 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=29.8
Q ss_pred CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQ 42 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~ 42 (305)
+..|.|.+......-.|+|.|..||+.|+.+|.
T Consensus 78 ~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 78 DGSNKFHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred CCCceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 456889999999999999999999999999885
No 161
>KOG0690|consensus
Probab=92.82 E-value=0.24 Score=44.89 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=28.5
Q ss_pred CCceEEEEEeceE----EEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAISRS----FTLRARSANERLEWIDAIQTAIKEN 48 (305)
Q Consensus 11 ~~~~f~i~~~~ks----f~~~a~s~~ek~~W~~~i~~ai~~~ 48 (305)
.||.|.|..-+=+ -.|+++|++||++|+++||......
T Consensus 78 rPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 78 RPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred CCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 4789988874332 2357899999999999999765443
No 162
>KOG0932|consensus
Probab=92.76 E-value=0.19 Score=48.19 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=38.1
Q ss_pred cCCCcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207 5 LPQTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIKEN 48 (305)
Q Consensus 5 ~~~~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~~~ 48 (305)
.+|+.+.+|.|.|.+ .-|.|-|||.|.+|+..||+.|+-+.+..
T Consensus 576 AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~f 620 (774)
T KOG0932|consen 576 ATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAF 620 (774)
T ss_pred CcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 467889999999999 55899999999999999999998765543
No 163
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=92.26 E-value=0.069 Score=51.24 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.3
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
+..|++|+. ...+|-|.+.|..||-.|++.|+.|+.
T Consensus 23 Nk~CADCgs----~~P~WASiNlGIFICi~CSGIHRsLGh 58 (648)
T PLN03119 23 NRRCINCNS----LGPQYVCTTFWTFVCMACSGIHREFTH 58 (648)
T ss_pred CCccccCCC----CCCCceeeccceEEeccchhhhccCCc
Confidence 678999998 568899999999999999999999864
No 164
>KOG1737|consensus
Probab=92.23 E-value=0.081 Score=53.28 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=61.3
Q ss_pred Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207 210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA 285 (305)
Q Consensus 210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a 285 (305)
....|||++.. .+.|.+|||+|.++.|.||..... ..+.+.+.+....+..... ..+.+...+...|+..+
T Consensus 77 ~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~-----~~~~~~~~~~q~~~~~~ 151 (799)
T KOG1737|consen 77 ASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGER-----MDICSVDGSCQIYLVEL 151 (799)
T ss_pred ccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCC-----cccchhhcccchhhhhh
Confidence 45789998877 889999999999999999987543 4566677765544432211 12333333344577888
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2207 286 DNEQSYERWMKAMREA 301 (305)
Q Consensus 286 ~s~e~~~~Wi~al~~a 301 (305)
-+..+.+.|+.+++.+
T Consensus 152 ~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 152 SKKLQRQGWLHALELA 167 (799)
T ss_pred hHHHhhcchhhhhhhc
Confidence 8999999999999866
No 165
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=92.16 E-value=0.36 Score=36.36 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=28.3
Q ss_pred CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48 (305)
Q Consensus 12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~ 48 (305)
...|.|.+|.|+|.|...+ ..-..|+++|++++...
T Consensus 67 ~~~F~I~tp~RtY~l~d~~-~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 67 FKTFFIHTPKRTYYLEDPE-GNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp SSEEEEEETTEEEEEE-TT-S-HHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcEEEEECCC-CCHHHHHHHHHHHHHHh
Confidence 4599999999999998844 44677999999988653
No 166
>PLN03131 hypothetical protein; Provisional
Probab=90.65 E-value=0.12 Score=50.11 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=32.2
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
+..|++|+. ...+|-|.+.|..||-.|++.|+.|+.
T Consensus 23 Nk~CADCga----~~P~WASiNlGIFICi~CSGIHRsLgh 58 (705)
T PLN03131 23 NRRCINCNS----LGPQFVCTNFWTFICMTCSGIHREFTH 58 (705)
T ss_pred CCccccCCC----CCCCeeEeccceEEchhchhhhcccCc
Confidence 668999998 567899999999999999999999864
No 167
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=90.64 E-value=0.91 Score=34.36 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=33.8
Q ss_pred CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~ 47 (305)
+...-|.|.|.++.++|.++|..+++.|.+.|+..+..
T Consensus 68 ~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 68 EERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred ceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999987764
No 168
>KOG2070|consensus
Probab=90.48 E-value=0.46 Score=44.96 Aligned_cols=93 Identities=16% Similarity=0.310 Sum_probs=67.1
Q ss_pred CCCceeeeeeecc-CCCceEEEEEEECCEEEEEccCccCc---cceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207 208 SGSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIK---ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF 283 (305)
Q Consensus 208 ~~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~~---p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f 283 (305)
+++++-|-..... +-.-+.||++|=.++|.++....+.. -.|.+++.|..|...++.......|+|...--....-
T Consensus 308 G~iiymg~v~Vqy~~ad~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~ 387 (661)
T KOG2070|consen 308 GNIIYMGQVLVQYAGADEKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVV 387 (661)
T ss_pred cceEeeeehhhhhcCcchhhheeeeccceeeeeEeccccchhhhccccccceeEEeehhhhhcccccccccccchhheee
Confidence 3445555544433 33456899999888888888765532 3578899999998766666667889986432233678
Q ss_pred EcCCHHHHHHHHHHHHH
Q psy2207 284 GADNEQSYERWMKAMRE 300 (305)
Q Consensus 284 ~a~s~e~~~~Wi~al~~ 300 (305)
.++.+.+++.|+++|..
T Consensus 388 ~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 388 SCNNQQDLQEWVEHLNK 404 (661)
T ss_pred ccCChHHHHHHHHHhhh
Confidence 89999999999999985
No 169
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.15 E-value=0.44 Score=34.62 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=27.0
Q ss_pred CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
.+.|.|.||.|++.|.- -...-.+|+++|+++.
T Consensus 56 ~~~F~I~Tp~rty~leD-~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 56 SSHFFVHTPNKVYSFED-PKGRASQWKKAIEDLQ 88 (89)
T ss_pred CccEEEECCCceEEEEC-CCCCHHHHHHHHHHHh
Confidence 36999999999999963 3467788999998763
No 170
>KOG1729|consensus
Probab=90.02 E-value=0.056 Score=48.24 Aligned_cols=41 Identities=32% Similarity=0.749 Sum_probs=37.6
Q ss_pred CeeeecCCCcccccccccccccccccccccccceeccCccC
Q psy2207 76 PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116 (305)
Q Consensus 76 p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~ 116 (305)
+.|..+.++..|..|...|.+..|+|||+.||+++|.+|..
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~ 52 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTL 52 (288)
T ss_pred HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhh
Confidence 45777888889999999999999999999999999999997
No 171
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=88.58 E-value=0.21 Score=45.44 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=30.4
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
+..|++|+.+ +..|-..+-|..+|-.|++.|+.|+.
T Consensus 22 Nk~CaDCga~----nPtWASvn~GIFLCl~CSGVHRsLGv 57 (395)
T PLN03114 22 NKICFDCNAK----NPTWASVTYGIFLCIDCSAVHRSLGV 57 (395)
T ss_pred CCcCccCCCC----CCCceeeccceeehhhhhHhhccCCC
Confidence 6689999995 45566678899999999999999975
No 172
>KOG4407|consensus
Probab=88.55 E-value=0.021 Score=59.31 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=70.7
Q ss_pred CCceeeeeeecc------------CCCceEEEEEEECCEEEEEccCccCc--------------cceEEEecCeEEEEcc
Q psy2207 209 GSQHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASEDIK--------------ALLSIPVLGYELEALN 262 (305)
Q Consensus 209 ~~~~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~d~~--------------p~~~i~L~~~~v~~~~ 262 (305)
+..+.||||.+. .+.|++.|.+|.+..|+.|++..... ....+.+.++.+.+.-
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence 346889999765 34799999999999999999755411 2234666777776644
Q ss_pred ccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 263 ~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
....+...|+|.......+.|.+++.++|-.|++.+++-
T Consensus 1002 setkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~S 1040 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSS 1040 (1973)
T ss_pred hhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhc
Confidence 445667899998666578999999999999999988654
No 173
>KOG4807|consensus
Probab=87.51 E-value=0.004 Score=56.55 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=59.1
Q ss_pred CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHH
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKA 297 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~a 297 (305)
...|++.|||+.+..+-||..... ..-.+.|+|..|+-+..-. ..+.|.|+|- +...+|.+.+-+......|+.|
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a-~q~nY~~~i~-~~~~~~tL~~~~s~Ir~~~~~A 109 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYA-VQRNYGFQIH-TKDAVYTLSAMTSGIRRNWIEA 109 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHH-HHhccceeec-ccchhhhhHHHHHHHHHHHHHH
Confidence 447999999999999999986432 2335678886665432211 2445899996 5556799999999999999999
Q ss_pred HHHHH
Q psy2207 298 MREAT 302 (305)
Q Consensus 298 l~~a~ 302 (305)
+.+..
T Consensus 110 ~~kT~ 114 (593)
T KOG4807|consen 110 LRKTV 114 (593)
T ss_pred HHhcc
Confidence 97643
No 174
>KOG0704|consensus
Probab=87.25 E-value=0.34 Score=43.82 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=31.2
Q ss_pred cCCCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
-+++..|++|+++ +..+.-..=|..||-.||+.|+.|+-
T Consensus 16 ~deNk~CfeC~a~----NPQWvSvsyGIfICLECSG~HRgLGV 54 (386)
T KOG0704|consen 16 QDENKKCFECGAP----NPQWVSVSYGIFICLECSGKHRGLGV 54 (386)
T ss_pred cccCCceeecCCC----CCCeEeecccEEEEEecCCcccccce
Confidence 3457789999994 44555556789999999999999975
No 175
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=85.64 E-value=0.4 Score=38.81 Aligned_cols=25 Identities=40% Similarity=0.675 Sum_probs=17.9
Q ss_pred cccccccccc------------cccccccccccccee
Q psy2207 86 MCQRCTSVFT------------VTFRRHHCRACGKVV 110 (305)
Q Consensus 86 ~C~~C~~~f~------------~~~rrhhCr~cg~v~ 110 (305)
.|..|+.+++ .++|+++|.+||..|
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 4888888772 345668999888764
No 176
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.58 E-value=9.9 Score=29.97 Aligned_cols=50 Identities=10% Similarity=0.205 Sum_probs=33.6
Q ss_pred EEEecCeEEEEccccCCcceeEEEEeC-CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 250 SIPVLGYELEALNEQDNFKYVFQLKHQ-GQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 250 ~i~L~~~~v~~~~~~~~~~~~F~l~~~-~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
.|.+....+..... +.+..|+|... ....|.+.|.|.+..+.|++.|++-
T Consensus 64 ~ikls~lglte~v~--gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~i 114 (133)
T cd01227 64 SLKMTAVGITENVK--GDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKV 114 (133)
T ss_pred eEEeecccccccCC--CCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 45555444443222 23457877653 3347999999999999999999753
No 177
>KOG2059|consensus
Probab=85.36 E-value=1.6 Score=43.33 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=35.6
Q ss_pred CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE 49 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~ 49 (305)
+.+|.|+|+.++|+..|+|..--|-++|+++|........
T Consensus 629 ~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~ 668 (800)
T KOG2059|consen 629 KMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQ 668 (800)
T ss_pred CCCceEEEEecCcceeEecCCchHHHHHHHHHHHHhccCc
Confidence 5689999999999999999999999999999998665433
No 178
>KOG0517|consensus
Probab=84.96 E-value=0.01 Score=63.33 Aligned_cols=92 Identities=22% Similarity=0.347 Sum_probs=65.0
Q ss_pred ceeeeeeecc----------CCCceEEEEEEECCEEEEEccCccCccc------eEEEe--cCeEEEEccccCCcceeEE
Q psy2207 211 QHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIKAL------LSIPV--LGYELEALNEQDNFKYVFQ 272 (305)
Q Consensus 211 ~~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d~~p~------~~i~L--~~~~v~~~~~~~~~~~~F~ 272 (305)
.+.|+|+.+- .+.|...|+++..+.|.+|++.+..... +..+| ..+.+...-+...++++|.
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~ 2379 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFL 2379 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhh
Confidence 6889997654 5678889999999999999976532211 11122 2222222223346678999
Q ss_pred EEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 273 LKHQGQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 273 l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
|..+.+..|.|.|.++++|..|+.++..+.
T Consensus 2380 l~~~~gae~llq~k~ee~m~sWL~~~a~~~ 2409 (2473)
T KOG0517|consen 2380 LQLPPGAEHLLQAKDEEEMESWLRALAVKR 2409 (2473)
T ss_pred hcCCchHHHHHhhccHHHHHHHHHHHHHHH
Confidence 988888889999999999999999986554
No 179
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.95 E-value=2.6 Score=31.92 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=30.8
Q ss_pred cCCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 9 ~~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
+..+++|-|.+.. .+..|..++..|...|..+|++
T Consensus 71 ~~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 71 DQRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 3667899999976 5889999999999999999985
No 180
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=83.86 E-value=0.3 Score=31.63 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=19.5
Q ss_pred ccccccccccc------ccccccccccceeccCccCC
Q psy2207 87 CQRCTSVFTVT------FRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 87 C~~C~~~f~~~------~rrhhCr~cg~v~C~~Cs~~ 117 (305)
|..|..+|+.. ..+..|..|+.+||..|=.+
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 38 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF 38 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChh
Confidence 77888888865 36899999999999988654
No 181
>KOG2996|consensus
Probab=83.66 E-value=1.6 Score=42.41 Aligned_cols=90 Identities=12% Similarity=0.314 Sum_probs=62.1
Q ss_pred ceEEEEEe-ce-EEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCcccccc
Q psy2207 13 NEFSVIAI-SR-SFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRC 90 (305)
Q Consensus 13 ~~f~i~~~-~k-sf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C 90 (305)
+.|-|+.. .| -|.|+..+++-|+.||+++.-|+.+..-..+. .....-....-...+.|..|
T Consensus 477 ~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi~Pdya~----------------an~H~fqmhtF~~~tsCkvC 540 (865)
T KOG2996|consen 477 YGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNISPDYAR----------------ANNHDFQMHTFKNTTSCKVC 540 (865)
T ss_pred eeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcCCccccc----------------ccCcceEEEeccCCcchHHH
Confidence 46666553 33 78999999999999999999988774321111 01111123334567889999
Q ss_pred ccccc-ccccccccccccceeccCccCCe
Q psy2207 91 TSVFT-VTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 91 ~~~f~-~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
..-.- .+..-..|..||.-+-..|++..
T Consensus 541 ~mllrGtfYQGY~C~~c~~~ahkecl~~v 569 (865)
T KOG2996|consen 541 QMLLRGTFYQGYKCEKCGADAHKECLGRV 569 (865)
T ss_pred HHHhhhhhhcceeeeeccccHHHHhccCC
Confidence 77442 45667899999999999999864
No 182
>KOG1264|consensus
Probab=83.51 E-value=1.8 Score=43.67 Aligned_cols=54 Identities=28% Similarity=0.538 Sum_probs=38.3
Q ss_pred EEEecCeEEEEccc-cCCcceeEEEEe--CCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 250 SIPVLGYELEALNE-QDNFKYVFQLKH--QGQDPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 250 ~i~L~~~~v~~~~~-~~~~~~~F~l~~--~~~~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
+.++..+.|+..+. ...+.++|.|.. .+.-.|.|+|++.|++..|+++|++++.
T Consensus 855 i~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~ 911 (1267)
T KOG1264|consen 855 ILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITW 911 (1267)
T ss_pred cccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHH
Confidence 34455555554332 234557888764 4555799999999999999999998764
No 183
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.53 E-value=3 Score=30.94 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=28.9
Q ss_pred cCCCceEEEEEe--------ceEEEEEeCCHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIAI--------SRSFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 9 ~~~~~~f~i~~~--------~ksf~~~a~s~~ek~~W~~~i~~ 43 (305)
...+|+|.|..| .|++.|.|+|++|-+.|...+-+
T Consensus 61 ~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflr 103 (110)
T cd01256 61 MSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLR 103 (110)
T ss_pred cCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHh
Confidence 566799999874 46899999999999999876644
No 184
>KOG0706|consensus
Probab=80.51 E-value=0.78 Score=42.91 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY 123 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~ 123 (305)
++..|.+|+.+-+.|... .=|..+|-.||..|+.|+-
T Consensus 22 ~NKvCFDCgAknPtWaSV----TYGIFLCiDCSAvHRnLGV 58 (454)
T KOG0706|consen 22 ENKVCFDCGAKNPTWASV----TYGIFLCIDCSAVHRNLGV 58 (454)
T ss_pred CCceecccCCCCCCceee----cceEEEEEecchhhhcccc
Confidence 367899999988777664 3479999999999999974
No 185
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.92 E-value=3.8 Score=31.29 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCCceEEEEEeceEEEEEeC--------------------CHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAISRSFTLRAR--------------------SANERLEWIDAIQTA 44 (305)
Q Consensus 10 ~~~~~f~i~~~~ksf~~~a~--------------------s~~ek~~W~~~i~~a 44 (305)
..+|+|+|.|...+|.+..+ ..+--..|..+|++|
T Consensus 63 ~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 63 HPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred CCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 57899999999999999654 233447799998865
No 186
>PF15411 PH_10: Pleckstrin homology domain
Probab=79.38 E-value=26 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=26.7
Q ss_pred CcceeEEEEe---CCceeEEEEcCCHHHHHHHHHHH
Q psy2207 266 NFKYVFQLKH---QGQDPLVFGADNEQSYERWMKAM 298 (305)
Q Consensus 266 ~~~~~F~l~~---~~~~~~~f~a~s~e~~~~Wi~al 298 (305)
...+.+.|.- ++...|.+...++++++.|-.+|
T Consensus 81 ~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 81 PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 4557888876 34457999999999999998875
No 187
>KOG3523|consensus
Probab=77.88 E-value=4 Score=39.85 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=26.8
Q ss_pred CcceeEEEEe-----CCceeEEEEcCCHHHHHHHHHHHH
Q psy2207 266 NFKYVFQLKH-----QGQDPLVFGADNEQSYERWMKAMR 299 (305)
Q Consensus 266 ~~~~~F~l~~-----~~~~~~~f~a~s~e~~~~Wi~al~ 299 (305)
+++|.|.+.. .....|.|.|+|+.++++||.||.
T Consensus 553 ~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 553 SRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred cccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 4567888764 223469999999999999999985
No 188
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=76.45 E-value=1.4 Score=33.35 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=19.7
Q ss_pred Ccccccccccccccccc-ccccccccee
Q psy2207 84 VSMCQRCTSVFTVTFRR-HHCRACGKVV 110 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rr-hhCr~cg~v~ 110 (305)
-..|..|+++|=-++|. -+|..||..+
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCcc
Confidence 35799999999877765 4466666654
No 189
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=75.82 E-value=1.6 Score=33.85 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=20.1
Q ss_pred Cccccccccccccccc-cccccccccee
Q psy2207 84 VSMCQRCTSVFTVTFR-RHHCRACGKVV 110 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~r-rhhCr~cg~v~ 110 (305)
-..|..|+++|-.++| .-+|..||.++
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCcc
Confidence 3579999999986655 46777777664
No 190
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.80 E-value=2.1 Score=32.53 Aligned_cols=35 Identities=26% Similarity=0.654 Sum_probs=28.2
Q ss_pred CCccccccccccccc----------ccccccccccceeccCccCC
Q psy2207 83 RVSMCQRCTSVFTVT----------FRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~----------~rrhhCr~cg~v~C~~Cs~~ 117 (305)
....|..|..+|+.. ..|.-|..|..+||..|=.+
T Consensus 54 ~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 98 (112)
T TIGR00622 54 GSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF 98 (112)
T ss_pred CCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh
Confidence 345799999999742 45788999999999999754
No 191
>KOG1451|consensus
Probab=75.34 E-value=2.5 Score=41.07 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=32.4
Q ss_pred CCCcCCCceEEEEEece--EEEEEeCCHHHHHHHHHHHHHH
Q psy2207 6 PQTEDYNNEFSVIAISR--SFTLRARSANERLEWIDAIQTA 44 (305)
Q Consensus 6 ~~~~~~~~~f~i~~~~k--sf~~~a~s~~ek~~W~~~i~~a 44 (305)
++.=+..++|+|..-+| ...++|-|+++|..||+++-.+
T Consensus 326 tdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 326 TDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred ccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 34446678999999888 7888999999999999988643
No 192
>KOG2996|consensus
Probab=74.34 E-value=12 Score=36.67 Aligned_cols=93 Identities=24% Similarity=0.318 Sum_probs=61.3
Q ss_pred Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCcc-ceEEEecCeEEEEcccc--C-------CcceeEEEEeC-
Q psy2207 210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKA-LLSIPVLGYELEALNEQ--D-------NFKYVFQLKHQ- 276 (305)
Q Consensus 210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p-~~~i~L~~~~v~~~~~~--~-------~~~~~F~l~~~- 276 (305)
+-+-|-|.... .+.-+.||..|=+.++..-+...+... ...|.|..+.+.-.+.. + ...+.|-|++.
T Consensus 406 pkiDGElki~s~~~~tkqdRyiFLfDkvviVCKrkG~sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~f~lI~tq 485 (865)
T KOG2996|consen 406 PKIDGELKITSTQAHTKQDRYIFLFDKVVIVCKRKGDSYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYGFYLIHTQ 485 (865)
T ss_pred CCcCceEEEeehhcCCccceEEeEecceEEEeeccCcchhHHHHHHHHhhccccCCCCchhhhhccceeeeeeEEEEEEc
Confidence 45667776665 455567777777777777777665433 33344554544422211 1 14488998884
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 277 GQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 277 ~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
+..-|.|.+.+++..+.||+++..|.
T Consensus 486 g~ngl~fy~Kte~~kkkWmeqfema~ 511 (865)
T KOG2996|consen 486 GRNGLEFYCKTEDLKKKWMEQFEMAK 511 (865)
T ss_pred CCcceEEEEecHHHHHHHHHHHHHHH
Confidence 33468999999999999999998774
No 193
>KOG0320|consensus
Probab=73.81 E-value=0.35 Score=39.61 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=33.5
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV 140 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~ 140 (305)
.-.|.+|-..|.-.. ----+||.|||+.|...-+ +..++|..|...+.
T Consensus 131 ~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~al-------k~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDAL-------KNTNKCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhhcc--ccccccchhHHHHHHHHHH-------HhCCCCCCcccccc
Confidence 456777777665221 1446899999999997643 55678988876554
No 194
>PRK00420 hypothetical protein; Validated
Probab=72.32 E-value=2.5 Score=32.18 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=16.7
Q ss_pred cccccccccccc-cccccccccccce
Q psy2207 85 SMCQRCTSVFTV-TFRRHHCRACGKV 109 (305)
Q Consensus 85 ~~C~~C~~~f~~-~~rrhhCr~cg~v 109 (305)
..|..|+.+|.- -.....|.+||.+
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCe
Confidence 579999988763 4445556555554
No 195
>KOG3576|consensus
Probab=72.05 E-value=0.82 Score=38.35 Aligned_cols=32 Identities=34% Similarity=0.651 Sum_probs=24.6
Q ss_pred ecCCCcccccccccccc---ccc---------ccccccccceec
Q psy2207 80 PDSRVSMCQRCTSVFTV---TFR---------RHHCRACGKVVC 111 (305)
Q Consensus 80 ~d~~~~~C~~C~~~f~~---~~r---------rhhCr~cg~v~C 111 (305)
+|...-.|..|++.|++ ++| ||.|.-||+-|=
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfn 156 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFN 156 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCccc
Confidence 45667789999999984 443 788988888754
No 196
>KOG4275|consensus
Probab=71.92 E-value=0.76 Score=40.62 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=41.7
Q ss_pred cCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV 140 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~ 140 (305)
-+..+.|.-|+..|..+.++|-|-.|-+-||..||. + ....|.|..|....-
T Consensus 41 ~~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~--v------~~~lr~c~~c~r~~a 92 (350)
T KOG4275|consen 41 SSQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSR--V------SISLRTCTSCRRVNA 92 (350)
T ss_pred ccccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHH--h------cccchhhhHHHHHHh
Confidence 345668999999999999999999999999999993 2 234577888865443
No 197
>KOG3520|consensus
Probab=70.58 E-value=6.6 Score=41.43 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=30.7
Q ss_pred ceEEEEE-e---ceEEEEEeCCHHHHHHHHHHHHHHHHHHHhc
Q psy2207 13 NEFSVIA-I---SRSFTLRARSANERLEWIDAIQTAIKENEQH 51 (305)
Q Consensus 13 ~~f~i~~-~---~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~ 51 (305)
++|=|++ . .=.|+|.|.|.+||+.||+.|++++.....+
T Consensus 685 ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 685 KAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred cceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 4555554 3 3589999999999999999999999875543
No 198
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=70.31 E-value=3.3 Score=23.97 Aligned_cols=24 Identities=21% Similarity=0.634 Sum_probs=15.6
Q ss_pred ccccccccccccc-cccccccccce
Q psy2207 86 MCQRCTSVFTVTF-RRHHCRACGKV 109 (305)
Q Consensus 86 ~C~~C~~~f~~~~-rrhhCr~cg~v 109 (305)
.|.+|+..+.+-. ..-.|+.||.-
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGHR 26 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-S
T ss_pred CCCcCCCeeEcCCCCcEECCcCCCe
Confidence 4889999888543 34678888753
No 199
>KOG0993|consensus
Probab=69.98 E-value=0.24 Score=45.59 Aligned_cols=64 Identities=23% Similarity=0.427 Sum_probs=51.0
Q ss_pred eeecCCCccccccccccccccccccccc--ccceeccCccCCeecccCCCCccccccHhhHHHHHhc
Q psy2207 78 WIPDSRVSMCQRCTSVFTVTFRRHHCRA--CGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQE 142 (305)
Q Consensus 78 w~~d~~~~~C~~C~~~f~~~~rrhhCr~--cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~ 142 (305)
|--+..+..|..|-.+|.-++-.-||.. |+.++|-.|++..++-. +...+..||.-|+.-....
T Consensus 462 ~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katvp~l-~~e~~akv~rlq~eL~~se 527 (542)
T KOG0993|consen 462 WQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATVPSL-PNERPAKVCRLQHELLNSE 527 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhcccc-cccchHHHHHHHHHHhhhc
Confidence 4445567789999999998887778876 99999999997665433 3578999999999887754
No 200
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.76 E-value=12 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCCceEEEEEe----ceEEEEEeCCHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAI----SRSFTLRARSANERLEWIDAIQ 42 (305)
Q Consensus 10 ~~~~~f~i~~~----~ksf~~~a~s~~ek~~W~~~i~ 42 (305)
....+|-|+-. -+++.|.|+|+++.+.|++.|.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~ 113 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLR 113 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHh
Confidence 44568887763 3689999999999999999986
No 201
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=69.35 E-value=1.2 Score=27.72 Aligned_cols=33 Identities=27% Similarity=0.713 Sum_probs=22.6
Q ss_pred ccccccccccccccccccccccceeccCccCCee
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~ 119 (305)
.|..|...|+ -.++-.=-.||.+||..|.....
T Consensus 1 ~C~~C~~~~~-~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYS-EERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCcccc-CCCCeEEcccCCHHHHHHHHhhc
Confidence 3777888772 22234446799999999997654
No 202
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=68.97 E-value=13 Score=28.20 Aligned_cols=37 Identities=24% Similarity=0.532 Sum_probs=30.0
Q ss_pred cceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207 267 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304 (305)
Q Consensus 267 ~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~ 304 (305)
..+-|-|.+. ....-|.++|..+.+.|+++|+.-..+
T Consensus 69 ~~~yfgL~T~-~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 69 ERRYFGLKTA-QGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred eEEEEEEEec-CcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 4477888855 667999999999999999999865543
No 203
>KOG2164|consensus
Probab=68.65 E-value=1.4 Score=41.95 Aligned_cols=52 Identities=23% Similarity=0.515 Sum_probs=41.1
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
-..|.+|-.++.+..+-. ||.++|..|.-+-...+ .-+..+-|.-|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~----CGHiFC~~CiLqy~~~s--~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTN----CGHIFCGPCILQYWNYS--AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccc----cCceeeHHHHHHHHhhh--cccCCccCCchhhhccc
Confidence 457999999888765543 99999999997765554 45677889999999886
No 204
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=68.33 E-value=3.2 Score=25.17 Aligned_cols=25 Identities=36% Similarity=1.010 Sum_probs=17.1
Q ss_pred cccccccccccccccccccccceeccC
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGP 113 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~ 113 (305)
|..|++.-.++ ...|+.||.+||..
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCccccc--CeECCccCCccccc
Confidence 45566644443 46799999999865
No 205
>KOG0705|consensus
Probab=67.27 E-value=3.8 Score=39.85 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=28.2
Q ss_pred eeEEEEeCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 269 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
++|.|+..-..++.|.|-+.|+++.|++||+.
T Consensus 446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~s 477 (749)
T KOG0705|consen 446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQS 477 (749)
T ss_pred ceEEEeccccchhhhhhcchhhHHHHHHHHHH
Confidence 58999876666799999999999999999974
No 206
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=65.99 E-value=3 Score=26.79 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=11.9
Q ss_pred cccccccccccccccc
Q psy2207 86 MCQRCTSVFTVTFRRH 101 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrh 101 (305)
.|..|+..|.++.+.+
T Consensus 7 ~C~~Cg~~fe~~~~~~ 22 (52)
T TIGR02605 7 RCTACGHRFEVLQKMS 22 (52)
T ss_pred EeCCCCCEeEEEEecC
Confidence 5889999998775433
No 207
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=65.95 E-value=3.9 Score=24.29 Aligned_cols=25 Identities=28% Similarity=0.861 Sum_probs=15.8
Q ss_pred ccccccccccccc-------ccccccccccee
Q psy2207 86 MCQRCTSVFTVTF-------RRHHCRACGKVV 110 (305)
Q Consensus 86 ~C~~C~~~f~~~~-------rrhhCr~cg~v~ 110 (305)
.|..|+..|.+-. +..-|.+||.++
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 5888888887542 345566666553
No 208
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=65.14 E-value=4.1 Score=25.53 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=15.8
Q ss_pred cccccccccccccc--ccccccccc
Q psy2207 86 MCQRCTSVFTVTFR--RHHCRACGK 108 (305)
Q Consensus 86 ~C~~C~~~f~~~~r--rhhCr~cg~ 108 (305)
.|..|+..|.+... ..+|..||.
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCC
Confidence 58888888865433 467777765
No 209
>KOG3723|consensus
Probab=65.06 E-value=7.4 Score=37.89 Aligned_cols=42 Identities=14% Similarity=0.514 Sum_probs=37.1
Q ss_pred cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207 9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ 50 (305)
Q Consensus 9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~ 50 (305)
...+.+|+|.|.++++.|.|.++...++|++-|+=|++-..+
T Consensus 800 rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~ 841 (851)
T KOG3723|consen 800 RSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKE 841 (851)
T ss_pred cccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999988876543
No 210
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=62.33 E-value=7.4 Score=24.90 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=28.1
Q ss_pred CCcccccccccc-cccccccccccccceeccCccCCe
Q psy2207 83 RVSMCQRCTSVF-TVTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 83 ~~~~C~~C~~~f-~~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
..+.|..|+... ++......|..|+.++-.+|...-
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 466899999976 456778999999999999998753
No 211
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=62.24 E-value=5.2 Score=24.98 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=15.5
Q ss_pred cccccccccccc-ccccccccccc
Q psy2207 86 MCQRCTSVFTVT-FRRHHCRACGK 108 (305)
Q Consensus 86 ~C~~C~~~f~~~-~rrhhCr~cg~ 108 (305)
.|..|+..|.+. ...-.|+.||.
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~ 27 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGY 27 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCc
Confidence 589999999865 23355666654
No 212
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=61.33 E-value=6.3 Score=26.89 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=22.2
Q ss_pred CCcccccccccccc--ccccccccccccee
Q psy2207 83 RVSMCQRCTSVFTV--TFRRHHCRACGKVV 110 (305)
Q Consensus 83 ~~~~C~~C~~~f~~--~~rrhhCr~cg~v~ 110 (305)
.+..|..|+..-.. ..|.+.|.+||...
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEE
Confidence 46689999997764 67789999999874
No 213
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=61.16 E-value=1.7 Score=30.50 Aligned_cols=51 Identities=27% Similarity=0.571 Sum_probs=21.2
Q ss_pred ecCCCcccccccccccccc---cccccccccceeccCccCCeecccCCCCccccccHhhH
Q psy2207 80 PDSRVSMCQRCTSVFTVTF---RRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECY 136 (305)
Q Consensus 80 ~d~~~~~C~~C~~~f~~~~---rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~ 136 (305)
.+-....|.+|+..-++.. -=..|..|+.-||..|-.+.+.-+ ..+|..|.
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg------~q~CpqCk 58 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG------NQVCPQCK 58 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-------SB-TTT-
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC------cccccccC
Confidence 4455778999998776542 236899999999988887765432 34566664
No 214
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=60.59 E-value=6.8 Score=25.90 Aligned_cols=34 Identities=21% Similarity=0.593 Sum_probs=20.5
Q ss_pred Cccccc--cccccccccc----ccccccccceeccCccCC
Q psy2207 84 VSMCQR--CTSVFTVTFR----RHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 84 ~~~C~~--C~~~f~~~~r----rhhCr~cg~v~C~~Cs~~ 117 (305)
...|.. |...+..... ...|..||..+|..|-..
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 346754 8887764433 267999999999999864
No 215
>KOG3531|consensus
Probab=60.03 E-value=5.8 Score=40.28 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=62.7
Q ss_pred Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCc---cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207 210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA 285 (305)
Q Consensus 210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~---d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a 285 (305)
.+..|-|.+.. ++.-++.+|...+-.||.-++.. ...-.|.||+. .++.-.+...+-+|+|.|. +.....+-+|
T Consensus 750 ~ir~g~llK~skkgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~-l~~en~en~~s~p~~~ti~-~~qk~i~vsa 827 (1036)
T KOG3531|consen 750 FIRSGCLLKLSKKGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT-LTMENSENEWSVPHCFTIS-GAQKQIYVSA 827 (1036)
T ss_pred hhhcCCchhhccccchhhhhhhhhhhheeccCCCChhheeEeccCCceE-eeeecccccccCCceEEEe-ccceEEEEec
Confidence 45777777776 34445556555565555544422 22345667776 5555554555778999987 6667789999
Q ss_pred CCHHHHHHHHHHHHHHHcC
Q psy2207 286 DNEQSYERWMKAMREATTL 304 (305)
Q Consensus 286 ~s~e~~~~Wi~al~~a~~~ 304 (305)
.+..+.+.|+.-++.|+.+
T Consensus 828 st~~~sk~~~~~r~~~i~~ 846 (1036)
T KOG3531|consen 828 STRRESKKWEFDRRKAIDL 846 (1036)
T ss_pred cchhhhhhhhhccchhhhh
Confidence 9999999999988777644
No 216
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=60.03 E-value=81 Score=26.46 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=53.9
Q ss_pred CCCCceeeeeeecc-CCCceEEEEEEECCEEEEEc-----cCccCccceEEEecCeE-EEEccccCCcceeEEEEeCCce
Q psy2207 207 DSGSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYK-----ASEDIKALLSIPVLGYE-LEALNEQDNFKYVFQLKHQGQD 279 (305)
Q Consensus 207 ~~~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~-----~~~d~~p~~~i~L~~~~-v~~~~~~~~~~~~F~l~~~~~~ 279 (305)
.+.++++..+.+-. ...-.+|.++|++..+|... ..........|+|.... |......+. .|.|..+++.
T Consensus 47 ~e~vlFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~---~~vihv~~~~ 123 (199)
T PF06017_consen 47 DEKVLFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSDN---FFVIHVPGEG 123 (199)
T ss_pred CcceEEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCCC---EEEEEECCCC
Confidence 34678888887776 55668899999999999996 44444556678885443 333332222 3444435666
Q ss_pred eEEEEcCCHHHHH
Q psy2207 280 PLVFGADNEQSYE 292 (305)
Q Consensus 280 ~~~f~a~s~e~~~ 292 (305)
.++|.++...|+-
T Consensus 124 D~il~~~~k~Elv 136 (199)
T PF06017_consen 124 DLILESDFKTELV 136 (199)
T ss_pred CEEEEeCcHHHHH
Confidence 6899998775543
No 217
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.45 E-value=3.4 Score=27.41 Aligned_cols=13 Identities=38% Similarity=1.196 Sum_probs=11.0
Q ss_pred ccccccccceecc
Q psy2207 100 RHHCRACGKVVCG 112 (305)
Q Consensus 100 rhhCr~cg~v~C~ 112 (305)
...|-+||+|+|.
T Consensus 18 ~~NCl~CGkIiC~ 30 (57)
T PF06221_consen 18 APNCLNCGKIICE 30 (57)
T ss_pred cccccccChhhcc
Confidence 4679999999994
No 218
>KOG1314|consensus
Probab=59.31 E-value=3 Score=37.97 Aligned_cols=37 Identities=35% Similarity=0.911 Sum_probs=25.2
Q ss_pred CCCCCeeeecCCCc-----cccccccccccccccccccccccee
Q psy2207 72 GKVAPLWIPDSRVS-----MCQRCTSVFTVTFRRHHCRACGKVV 110 (305)
Q Consensus 72 ~~~~p~w~~d~~~~-----~C~~C~~~f~~~~rrhhCr~cg~v~ 110 (305)
|..++.|-|+.... -|..|.. | -.-|-||||.|.++|
T Consensus 74 G~vp~~wkPe~~~D~~~lqfCk~Cqg-Y-KapRSHHCrkCnrCv 115 (414)
T KOG1314|consen 74 GFVPLGWKPENPKDEMFLQFCKKCQG-Y-KAPRSHHCRKCNRCV 115 (414)
T ss_pred CCCCCCCCCCCChhHHHHHHHhhccC-c-CCCccccchHHHHHH
Confidence 57788898865443 4666654 1 123569999999985
No 219
>PF15616 TerY-C: TerY-C metal binding domain
Probab=59.21 E-value=6 Score=31.05 Aligned_cols=39 Identities=23% Similarity=0.561 Sum_probs=27.8
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHH
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYL 139 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~ 139 (305)
.+.|..|+..+.+. -| .||+++|..=. ..-+|..|-...
T Consensus 77 ~PgCP~CGn~~~fa----~C-~CGkl~Ci~g~------------~~~~CPwCg~~g 115 (131)
T PF15616_consen 77 APGCPHCGNQYAFA----VC-GCGKLFCIDGE------------GEVTCPWCGNEG 115 (131)
T ss_pred CCCCCCCcChhcEE----Ee-cCCCEEEeCCC------------CCEECCCCCCee
Confidence 47899999988764 36 89999995433 245677775443
No 220
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=58.93 E-value=54 Score=24.27 Aligned_cols=53 Identities=4% Similarity=-0.050 Sum_probs=35.3
Q ss_pred CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHH
Q psy2207 245 IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKA 297 (305)
Q Consensus 245 ~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~a 297 (305)
......+++..........---++.+++|...++++|+|.-++.+++++=+++
T Consensus 52 ~~~~~~w~~~~I~~v~~RRyllr~~AlEiF~~dg~s~f~~F~~~~~R~~v~~~ 104 (106)
T PF14844_consen 52 KPKSKRWPLSDIKEVHKRRYLLRDTALEIFFSDGRSYFFNFESKKERDEVYNK 104 (106)
T ss_dssp --TCEEEEGGGEEEEEEEEETTEEEEEEEEETTS-EEEEE-SSHHHHHHHHCC
T ss_pred CCceEEEEHHHhHHHHHHHhcCcceEEEEEEcCCcEEEEEcCCHHHHHHHHHh
Confidence 34456677776655544333345679999998899999999999998865443
No 221
>KOG4305|consensus
Probab=58.43 E-value=14 Score=38.78 Aligned_cols=37 Identities=35% Similarity=0.431 Sum_probs=30.9
Q ss_pred EEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhc
Q psy2207 15 FSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQH 51 (305)
Q Consensus 15 f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~ 51 (305)
|.+.....+|.++|+|.++++.|++.|.++.+...++
T Consensus 656 ~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~ 692 (1029)
T KOG4305|consen 656 YLGGARGASFTLYAESLNGRDQWVEKIKQAQKRSLER 692 (1029)
T ss_pred eeccccceEEEeeccchHHhhhHHhhhhHHHHhhhhh
Confidence 3445577799999999999999999999988776654
No 222
>KOG3518|consensus
Probab=57.83 E-value=9.5 Score=34.65 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=34.5
Q ss_pred cCCCceEEEEE---eceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIA---ISRSFTLRARSANERLEWIDAIQTAIKENE 49 (305)
Q Consensus 9 ~~~~~~f~i~~---~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~ 49 (305)
++.|-+|+|.. |.--+.|.|.|.++|+-||..|.+.|-++.
T Consensus 393 peeplsfqv~~fdnpkaq~~fma~sme~kr~wm~elkrlildh~ 436 (521)
T KOG3518|consen 393 PEEPLSFQVFHFDNPKAQHTFMAKSMEDKRLWMLELKRLILDHH 436 (521)
T ss_pred CCCCceeEEEecCCcchhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 56677888876 777889999999999999999999876643
No 223
>PF12773 DZR: Double zinc ribbon
Probab=57.72 E-value=7.4 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.596 Sum_probs=16.9
Q ss_pred CCccccccccccc-ccccccccccccce
Q psy2207 83 RVSMCQRCTSVFT-VTFRRHHCRACGKV 109 (305)
Q Consensus 83 ~~~~C~~C~~~f~-~~~rrhhCr~cg~v 109 (305)
++..|..|+.++. .......|..||..
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCC
Confidence 4667888888776 22334556666653
No 224
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=57.21 E-value=7.1 Score=25.12 Aligned_cols=27 Identities=37% Similarity=0.800 Sum_probs=18.6
Q ss_pred Cccccccccccc-cccccccccccccee
Q psy2207 84 VSMCQRCTSVFT-VTFRRHHCRACGKVV 110 (305)
Q Consensus 84 ~~~C~~C~~~f~-~~~rrhhCr~cg~v~ 110 (305)
...|..|+..|- .-..+.+|..||...
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCCEE
Confidence 457999988532 334578888888754
No 225
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=57.03 E-value=5.4 Score=30.56 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=15.3
Q ss_pred Cccccccccccccccccccccccc
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACG 107 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg 107 (305)
.-.|..|+..|........|..||
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cg 93 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCH 93 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCc
Confidence 347889998887765434444444
No 226
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=56.12 E-value=3.9 Score=25.41 Aligned_cols=30 Identities=27% Similarity=0.671 Sum_probs=12.6
Q ss_pred cccccccccccccccccccccceeccCccCC
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~ 117 (305)
|.+|.. |+.....--=-.||.+||.+|...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~ 30 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQK 30 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHH
Confidence 556666 643222111234999999887653
No 227
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.05 E-value=6.4 Score=23.48 Aligned_cols=25 Identities=32% Similarity=0.790 Sum_probs=15.4
Q ss_pred ccccccccccccccc-------ccccccccce
Q psy2207 85 SMCQRCTSVFTVTFR-------RHHCRACGKV 109 (305)
Q Consensus 85 ~~C~~C~~~f~~~~r-------rhhCr~cg~v 109 (305)
..|..|+..|.+-.. +.-|-.||.+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~ 34 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHV 34 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcE
Confidence 368888888875432 4455555544
No 228
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=55.90 E-value=6.5 Score=25.16 Aligned_cols=23 Identities=30% Similarity=0.742 Sum_probs=16.0
Q ss_pred cccccccccccc--ccccccccccc
Q psy2207 86 MCQRCTSVFTVT--FRRHHCRACGK 108 (305)
Q Consensus 86 ~C~~C~~~f~~~--~rrhhCr~cg~ 108 (305)
.|+.|++.|.+. .+...|..||.
T Consensus 8 ~C~~Cg~~~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 8 KCARCGREVELDQETRGIRCPYCGS 32 (49)
T ss_pred EhhhcCCeeehhhccCceeCCCCCc
Confidence 599999999743 45566666664
No 229
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=54.41 E-value=6.4 Score=24.39 Aligned_cols=30 Identities=23% Similarity=0.701 Sum_probs=23.1
Q ss_pred ccccccccccccccccccccc-cceeccCccCC
Q psy2207 86 MCQRCTSVFTVTFRRHHCRAC-GKVVCGPCSDY 117 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~c-g~v~C~~Cs~~ 117 (305)
.|..|+. .++..|++|..| ..-+|..|...
T Consensus 2 ~Cd~C~~--~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQG--PIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCC--cCcCCeEECCCCCCccchHHhhCc
Confidence 5888988 567789999998 46678887654
No 230
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=54.29 E-value=2.4 Score=27.09 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=24.6
Q ss_pred ccccccccccccccccccccccceeccCccCCe
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
.|-.|...|++..- ..|..||+.-|..|-...
T Consensus 9 ~CDLCn~~~p~~~L-RQCvlCGRWaC~sCW~de 40 (57)
T PF14445_consen 9 SCDLCNSSHPISEL-RQCVLCGRWACNSCWQDE 40 (57)
T ss_pred hHHhhcccCcHHHH-HHHhhhchhhhhhhhhhh
Confidence 58889888885433 369999999999997543
No 231
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=53.60 E-value=8 Score=23.99 Aligned_cols=29 Identities=28% Similarity=0.736 Sum_probs=18.7
Q ss_pred Ccccccccccccccccccccccccc-eeccCc
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGK-VVCGPC 114 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~-v~C~~C 114 (305)
...|..|+. .++..|+||..|.. -+|..|
T Consensus 4 ~~~C~~C~~--~i~g~ry~C~~C~d~dlC~~C 33 (44)
T smart00291 4 SYSCDTCGK--PIVGVRYHCLVCPDYDLCQSC 33 (44)
T ss_pred CcCCCCCCC--CCcCCEEECCCCCCccchHHH
Confidence 346899998 45667888877632 244444
No 232
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=53.36 E-value=6.5 Score=25.07 Aligned_cols=30 Identities=27% Similarity=0.642 Sum_probs=20.4
Q ss_pred cccccccccccccccccccccc---ceeccCccC
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACG---KVVCGPCSD 116 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg---~v~C~~Cs~ 116 (305)
.|..|+. .++...|+||..|. .-+|..|-.
T Consensus 2 ~Cd~C~~-~pI~G~R~~C~~C~~~d~DlC~~C~~ 34 (48)
T cd02341 2 KCDSCGI-EPIPGTRYHCSECDDGDFDLCQDCVV 34 (48)
T ss_pred CCCCCCC-CccccceEECCCCCCCCCccCHHHHh
Confidence 3777876 23568889998887 446666644
No 233
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=53.09 E-value=4.1 Score=26.61 Aligned_cols=8 Identities=63% Similarity=1.448 Sum_probs=3.8
Q ss_pred ccccccce
Q psy2207 102 HCRACGKV 109 (305)
Q Consensus 102 hCr~cg~v 109 (305)
+||.||+-
T Consensus 12 ~CrRCGk~ 19 (60)
T PF10892_consen 12 PCRRCGKS 19 (60)
T ss_pred hhhhhCcc
Confidence 45555543
No 234
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=52.61 E-value=7 Score=24.01 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=10.8
Q ss_pred ccccccccccccccc
Q psy2207 86 MCQRCTSVFTVTFRR 100 (305)
Q Consensus 86 ~C~~C~~~f~~~~rr 100 (305)
.|..|+..|.++...
T Consensus 7 ~C~~Cg~~fe~~~~~ 21 (42)
T PF09723_consen 7 RCEECGHEFEVLQSI 21 (42)
T ss_pred EeCCCCCEEEEEEEc
Confidence 588888888766543
No 235
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=52.57 E-value=12 Score=21.12 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=22.0
Q ss_pred ccccccccccccccccccccccceeccCcc
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCS 115 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs 115 (305)
.|-.|++...-.. ..+|..|+..+..+|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 3777877666444 7899999988888875
No 236
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=52.44 E-value=5.4 Score=28.54 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=15.4
Q ss_pred Cccccccccccccccc---ccccccccce
Q psy2207 84 VSMCQRCTSVFTVTFR---RHHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~r---rhhCr~cg~v 109 (305)
...|+.|+.++....+ ..||+.+|.|
T Consensus 22 ~~~C~iC~~~~~~~~~~~~vDHdH~tG~v 50 (81)
T PF02945_consen 22 GGRCAICGKPLPGESRKLVVDHDHKTGRV 50 (81)
T ss_dssp TTE-TTT-SEEETTCGGCEEEE-TTTTBE
T ss_pred CCcCcCCCCCcccCCCcceecCCCCCCCc
Confidence 3489999996553322 4699988885
No 237
>KOG1315|consensus
Probab=52.31 E-value=6.2 Score=35.74 Aligned_cols=31 Identities=32% Similarity=0.768 Sum_probs=22.5
Q ss_pred eecCCCcccccccccccccccccccccccceec
Q psy2207 79 IPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVC 111 (305)
Q Consensus 79 ~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C 111 (305)
-+|+....|..|+. -.-.|-|||+.|++.|=
T Consensus 104 ~~~g~~R~C~kC~~--iKPdRaHHCsvC~rCvL 134 (307)
T KOG1315|consen 104 TSDGAVRYCDKCKC--IKPDRAHHCSVCNRCVL 134 (307)
T ss_pred cCCCCceeeccccc--ccCCccccchhhhhhhh
Confidence 45677888999987 11246699999988753
No 238
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=52.05 E-value=7.2 Score=29.78 Aligned_cols=24 Identities=21% Similarity=0.618 Sum_probs=15.9
Q ss_pred Cccccccccccccccccccccccc
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACG 107 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg 107 (305)
.-.|..|+..|.......-|..||
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCH 93 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCC
Confidence 346888888887665444466555
No 239
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=52.04 E-value=7 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=14.7
Q ss_pred Cccccccccccccccccc-cccccc
Q psy2207 84 VSMCQRCTSVFTVTFRRH-HCRACG 107 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrh-hCr~cg 107 (305)
.-.|..|+..|.+..... +|..||
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cg 95 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCH 95 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCC
Confidence 346888988887654322 355544
No 240
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=51.97 E-value=8.1 Score=22.68 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=10.4
Q ss_pred ccCccCC-eecccCCCCccccccHhh
Q psy2207 111 CGPCSDY-LAPLEYKKFRNFRVCEEC 135 (305)
Q Consensus 111 C~~Cs~~-~~~l~~~~~~~~rvC~~C 135 (305)
|..|.+. ...+|...++...||..|
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~C 28 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPAC 28 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTT
T ss_pred cccccChhhhhcCCCCCccceECCCC
Confidence 4444433 234455567777777777
No 241
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=51.86 E-value=31 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=31.5
Q ss_pred eecCCCcCCCceEEEEE------eceEEEEE-eCCHHHHHHHHHHHHHHHH
Q psy2207 3 VCLPQTEDYNNEFSVIA------ISRSFTLR-ARSANERLEWIDAIQTAIK 46 (305)
Q Consensus 3 v~~~~~~~~~~~f~i~~------~~ksf~~~-a~s~~ek~~W~~~i~~ai~ 46 (305)
|.+.|+++-+|+|.+.- .++-|.|+ ..-+.+|..|+..|-.-++
T Consensus 78 vdI~DtE~c~~aF~L~~R~p~d~~~~L~sF~l~~Ee~~K~~~Lk~Lcr~~A 128 (129)
T cd01229 78 LDIRDTEDCHNAFALLVRPPTEQANVLLSFQMTSEELPKEVWLKMLCRHVA 128 (129)
T ss_pred EeeeccccccceeEEEEeCCccchheEEEEEecCCcchHHHHHHHHHHHhc
Confidence 56778888999999875 24545554 4456688999998876553
No 242
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=51.41 E-value=4.8 Score=24.75 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=23.3
Q ss_pred ccccccccccccccccccccccceeccCccCCee
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~ 119 (305)
.|.+|...|.......-. .||.+||..|....+
T Consensus 2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~ 34 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWL 34 (44)
T ss_dssp CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHH
T ss_pred CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHH
Confidence 588999988653333333 499999999976543
No 243
>KOG3507|consensus
Probab=51.35 E-value=7.2 Score=25.81 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=18.6
Q ss_pred ccccccccccccccc-ccccccccce
Q psy2207 85 SMCQRCTSVFTVTFR-RHHCRACGKV 109 (305)
Q Consensus 85 ~~C~~C~~~f~~~~r-rhhCr~cg~v 109 (305)
-.|.+|++..++-.. .-.||.||.-
T Consensus 21 YiCgdC~~en~lk~~D~irCReCG~R 46 (62)
T KOG3507|consen 21 YICGDCGQENTLKRGDVIRCRECGYR 46 (62)
T ss_pred EEeccccccccccCCCcEehhhcchH
Confidence 369999998886543 4678888864
No 244
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=51.33 E-value=5.2 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.587 Sum_probs=15.8
Q ss_pred Ccccccccccccccccccccccccc
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGK 108 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~ 108 (305)
.-.|..|+..|.+-...-.|..||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGS 94 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSS
T ss_pred cEECCCCCCEEecCCCCCCCcCCcC
Confidence 4479999999987665555555553
No 245
>PHA02768 hypothetical protein; Provisional
Probab=51.11 E-value=8.8 Score=25.24 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=9.9
Q ss_pred cccccccccccc
Q psy2207 86 MCQRCTSVFTVT 97 (305)
Q Consensus 86 ~C~~C~~~f~~~ 97 (305)
.|..|+..|+..
T Consensus 7 ~C~~CGK~Fs~~ 18 (55)
T PHA02768 7 ECPICGEIYIKR 18 (55)
T ss_pred CcchhCCeeccH
Confidence 699999999743
No 246
>KOG0818|consensus
Probab=50.26 E-value=5.3 Score=38.14 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=29.0
Q ss_pred CcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK 124 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~ 124 (305)
...|.+|+.+-.-|.. .+=|.++|..|.+.|+.|+..
T Consensus 8 ~evC~DC~~~dp~WAS----vnrGt~lC~eCcsvHrsLGrh 44 (669)
T KOG0818|consen 8 SEVCADCSGPDPSWAS----VNRGTFLCDECCSVHRSLGRH 44 (669)
T ss_pred hhhhcccCCCCCccee----ecCceEehHhhhHHHhhhcch
Confidence 3479999997665544 445899999999999999753
No 247
>KOG0931|consensus
Probab=49.76 E-value=16 Score=34.64 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=42.5
Q ss_pred CeeecCCCcCCCceEEEEEece------EEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207 1 MKVCLPQTEDYNNEFSVIAISR------SFTLRARSANERLEWIDAIQTAIKENE 49 (305)
Q Consensus 1 m~v~~~~~~~~~~~f~i~~~~k------sf~~~a~s~~ek~~W~~~i~~ai~~~~ 49 (305)
|+|+.-.+.-|+|.+.|.+|.. -..|.|.+.+||...++.|.+.|.+..
T Consensus 475 mhv~lFqn~yY~fGitltsp~~g~e~k~~ihFnA~n~~dr~kFv~Dl~ESIaEvt 529 (627)
T KOG0931|consen 475 MHVQLFQNGYYEFGITLTSPVPGSEKKVLIHFNAPNFQDRCKFVADLRESIAEVT 529 (627)
T ss_pred HHHHHHhhccccCceEEeccCCCCceeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999655 477899999999999999999998744
No 248
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=49.43 E-value=7.7 Score=23.49 Aligned_cols=30 Identities=17% Similarity=0.468 Sum_probs=21.0
Q ss_pred CcccccccccccccccccccccccceeccCccCC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~ 117 (305)
...|..|... .-...|..|+..+|..|...
T Consensus 3 ~~~C~~H~~~----~~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEE----PLSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTS----BEEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCcc----ceEEEecCCCCccCccCCCC
Confidence 4567777763 23467999999999999854
No 249
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=49.35 E-value=9.2 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.511 Sum_probs=16.2
Q ss_pred ccccccccccccccccccccccceeccCccC
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~ 116 (305)
.|..|+..|.++....- ...+.|..|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~---~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISD---DPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCC---CCCCCCCCCCC
Confidence 58889998886644321 23444555544
No 250
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=49.21 E-value=11 Score=23.16 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=5.8
Q ss_pred ccccccccc
Q psy2207 86 MCQRCTSVF 94 (305)
Q Consensus 86 ~C~~C~~~f 94 (305)
.|..|+...
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 366777755
No 251
>PLN02866 phospholipase D
Probab=49.19 E-value=36 Score=35.97 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=35.2
Q ss_pred cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47 (305)
Q Consensus 9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~ 47 (305)
....++|.|...+|+..|.+.|..+..+|+.+|+++...
T Consensus 271 ~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 271 NPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred CCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999998743
No 252
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=48.95 E-value=9.1 Score=24.44 Aligned_cols=26 Identities=35% Similarity=0.746 Sum_probs=16.8
Q ss_pred Ccccccccc-ccc-ccccccccccccce
Q psy2207 84 VSMCQRCTS-VFT-VTFRRHHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~-~f~-~~~rrhhCr~cg~v 109 (305)
...|..|+. .|= .-.-|++|-.||..
T Consensus 19 ~~~CPrCG~gvfmA~H~dR~~CGkCgyT 46 (51)
T COG1998 19 NRFCPRCGPGVFMADHKDRWACGKCGYT 46 (51)
T ss_pred cccCCCCCCcchhhhcCceeEeccccce
Confidence 567888985 332 23447888887753
No 253
>KOG0976|consensus
Probab=48.65 E-value=4.9 Score=40.56 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=55.8
Q ss_pred ceeeeeeecc----CCCceEEEEEEECCEEEEEccCc-c--CccceEEEec-C-eEEEEcc---cc-CCcceeEEEE--e
Q psy2207 211 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASE-D--IKALLSIPVL-G-YELEALN---EQ-DNFKYVFQLK--H 275 (305)
Q Consensus 211 ~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~-d--~~p~~~i~L~-~-~~v~~~~---~~-~~~~~~F~l~--~ 275 (305)
-+.|||.... ...|--.|..++-....+|.... + ..|...|+|. + +...... .. ++...+|.|+ .
T Consensus 813 rmnGwlRVyRdd~~~stwl~~wammdl~~~~fy~~~gadple~p~f~idlnkeqw~Lrtgqe~~~~v~dimrvfnvliIK 892 (1265)
T KOG0976|consen 813 RMNGWLRVYRDDAEASTWLLGWAMMDLEGDDFYDMNGADPLEDPVFLIDLNKEQWALRTGQESLTHVPDIMRVFNVLIIK 892 (1265)
T ss_pred hcccceeeeccccchhHHHHHHHHhhhcccchhhccCCccccCceEEeecchhHHHHHhccccccCCcchhhhheeeeec
Confidence 3889987654 66798889887655555555432 2 3466666662 1 1111000 00 1122344443 2
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 276 QGQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
.-.+..++.|++...+++|...|+.|-
T Consensus 893 ~~~r~l~I~ap~~~saerwA~CLq~aq 919 (1265)
T KOG0976|consen 893 DLERLLMIAAPSPKSAERWALCLQDAQ 919 (1265)
T ss_pred chhhhheeecCCCccHHHHHHHHHHHH
Confidence 455678999999999999999998764
No 254
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=48.40 E-value=8.2 Score=24.16 Aligned_cols=29 Identities=28% Similarity=0.714 Sum_probs=19.8
Q ss_pred cccccccccccccccccccccc-ceeccCccC
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACG-KVVCGPCSD 116 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg-~v~C~~Cs~ 116 (305)
.|..|+. .+...|.+|..|. .-+|..|-.
T Consensus 2 ~C~~C~~--~i~g~r~~C~~C~d~dLC~~Cf~ 31 (46)
T cd02249 2 SCDGCLK--PIVGVRYHCLVCEDFDLCSSCYA 31 (46)
T ss_pred CCcCCCC--CCcCCEEECCCCCCCcCHHHHHC
Confidence 4888888 4456788988876 445555554
No 255
>TIGR01623 put_zinc_LRP1 putative zinc finger domain, LRP1 type. This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.
Probab=48.25 E-value=6.7 Score=24.14 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=24.7
Q ss_pred cccccccccccccccccccccceeccCccCCe
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
|.+|+.+-.---.-..||.|.+.-|-.|.++-
T Consensus 2 C~~CgNpa~k~C~~~~CRtCCK~r~~DC~tHv 33 (43)
T TIGR01623 2 CQDCGNQAKKECLFERCRTCCKSRGFHCVTHV 33 (43)
T ss_pred hhhccchhhCCCchhhhhHHhcccCcCCcchh
Confidence 77788776655555789999999888898764
No 256
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=47.47 E-value=12 Score=25.94 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=14.1
Q ss_pred ccccccccccccccccccccccce
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKV 109 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v 109 (305)
.|..|.++......+.||-.|+.-
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~ 26 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKD 26 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--E
T ss_pred cCCCCCCccEEeCCEEECcccccc
Confidence 588888886666666777776653
No 257
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=45.97 E-value=14 Score=23.71 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=18.6
Q ss_pred CCCceEEEEEEECCEEEEEcc
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKA 241 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~ 241 (305)
.+.|.+.|..+.+..|.+|+-
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 457999999999999999984
No 258
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=45.79 E-value=10 Score=29.00 Aligned_cols=24 Identities=25% Similarity=0.689 Sum_probs=14.5
Q ss_pred Ccccccccccccccccc-ccccccc
Q psy2207 84 VSMCQRCTSVFTVTFRR-HHCRACG 107 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rr-hhCr~cg 107 (305)
.-.|..|+..|...... -.|..||
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~CP~Cg 94 (114)
T PRK03681 70 ECWCETCQQYVTLLTQRVRRCPQCH 94 (114)
T ss_pred EEEcccCCCeeecCCccCCcCcCcC
Confidence 34688888877765432 3355544
No 259
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=45.45 E-value=8.6 Score=23.79 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=26.5
Q ss_pred CcccccccccccccccccccccccceeccCccCC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~ 117 (305)
.+.|..|...+........|..|+.++-.+|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 5579999997764334678999999999888764
No 260
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=45.41 E-value=95 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=27.2
Q ss_pred CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45 (305)
Q Consensus 12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai 45 (305)
-..|.|.- +|.|...|+|.+||...+..|-..-
T Consensus 56 ~~~F~l~~-~k~y~W~a~s~~Ek~~Fi~~L~k~~ 88 (91)
T PF15277_consen 56 TPEFDLTF-DKPYYWEASSAKEKNTFIRSLWKLY 88 (91)
T ss_dssp TTEEEEES-SSEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcCEEEEE-CCCcEEEeCCHHHHHHHHHHHHHHh
Confidence 34788777 6799999999999999999886543
No 261
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=45.25 E-value=7.8 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.603 Sum_probs=18.4
Q ss_pred cccccccccccccccccccccceeccCccCCe
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
|..|...+. .......||.++|..|....
T Consensus 1 C~iC~~~~~---~~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDELR---DPVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB-S---SEEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCccc---CcCEECCCCCchhHHHHHHH
Confidence 445555332 23456789999999997653
No 262
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=45.24 E-value=14 Score=21.79 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=9.2
Q ss_pred ccccccccccccc
Q psy2207 86 MCQRCTSVFTVTF 98 (305)
Q Consensus 86 ~C~~C~~~f~~~~ 98 (305)
.|..|++.|.+-.
T Consensus 4 ~CP~C~~~~~v~~ 16 (38)
T TIGR02098 4 QCPNCKTSFRVVD 16 (38)
T ss_pred ECCCCCCEEEeCH
Confidence 5788888776543
No 263
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=45.15 E-value=10 Score=26.04 Aligned_cols=54 Identities=30% Similarity=0.424 Sum_probs=33.0
Q ss_pred cccccccccccccccccccccceeccCccCCe-ecc---cC-------CCCccccccHhhHHHHH
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL-APL---EY-------KKFRNFRVCEECYHYLV 140 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~-~~l---~~-------~~~~~~rvC~~C~~~~~ 140 (305)
|-+|...-..+.-.--|..||.-+|...+... .++ +| ...-+.-+|..|+..+.
T Consensus 3 CY~Ca~~gkdt~AVavCivCG~GlC~~H~~~e~~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~~ 67 (68)
T PF09947_consen 3 CYDCAEEGKDTDAVAVCIVCGAGLCMDHSKREEIPVWEGGYPFPSKKLKKPLPRILCPECHAALK 67 (68)
T ss_pred chhhhhcCCCccceehHHhcCchhhHHHHhhhheeeeccCCCCccccccCCCCeeecHHHHHHhh
Confidence 44554433344445679999999999887642 111 11 12235678999988653
No 264
>KOG3799|consensus
Probab=44.80 E-value=15 Score=28.77 Aligned_cols=54 Identities=22% Similarity=0.498 Sum_probs=39.1
Q ss_pred Ccccccccc-cccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 84 VSMCQRCTS-VFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 84 ~~~C~~C~~-~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
...|.+|.. +|..- =-|.|.-|---+|.+|-+. +.|. +++-.-||..|-.....
T Consensus 65 datC~IC~KTKFADG-~GH~C~YCq~r~CARCGGr-v~lr--sNKv~wvcnlc~k~q~i 119 (169)
T KOG3799|consen 65 DATCGICHKTKFADG-CGHNCSYCQTRFCARCGGR-VSLR--SNKVMWVCNLCRKQQEI 119 (169)
T ss_pred Ccchhhhhhcccccc-cCcccchhhhhHHHhcCCe-eeec--cCceEEeccCCcHHHHH
Confidence 457999976 55432 2499999999999999874 4443 46777889988766553
No 265
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=44.70 E-value=13 Score=27.18 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=17.9
Q ss_pred Cccccccccccccc---------ccccccccccce
Q psy2207 84 VSMCQRCTSVFTVT---------FRRHHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~~f~~~---------~rrhhCr~cg~v 109 (305)
.+.|..|+++...+ .-|.+||.|+.-
T Consensus 33 rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~ 67 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAP 67 (92)
T ss_pred CCcCcCCCCcCcccccchHHHHHHhCCCCcccCCC
Confidence 35788888876543 347788888754
No 266
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=44.66 E-value=13 Score=25.35 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=20.9
Q ss_pred ccccccc---cccccccccccccccceeccC
Q psy2207 86 MCQRCTS---VFTVTFRRHHCRACGKVVCGP 113 (305)
Q Consensus 86 ~C~~C~~---~f~~~~rrhhCr~cg~v~C~~ 113 (305)
.|.+|+. -|+-......|..||.+++..
T Consensus 21 kCpdC~N~q~vFshast~V~C~~CG~~l~~P 51 (67)
T COG2051 21 KCPDCGNEQVVFSHASTVVTCLICGTTLAEP 51 (67)
T ss_pred ECCCCCCEEEEeccCceEEEecccccEEEec
Confidence 6888877 455556678899999988854
No 267
>KOG1814|consensus
Probab=44.52 E-value=25 Score=32.96 Aligned_cols=42 Identities=29% Similarity=0.816 Sum_probs=32.0
Q ss_pred eeeecCCCccccccccccccc--ccccccccccceeccCccCCee
Q psy2207 77 LWIPDSRVSMCQRCTSVFTVT--FRRHHCRACGKVVCGPCSDYLA 119 (305)
Q Consensus 77 ~w~~d~~~~~C~~C~~~f~~~--~rrhhCr~cg~v~C~~Cs~~~~ 119 (305)
.|+ ++....|..|...-.-. --++||-.||..+|+-|+.--.
T Consensus 362 kwl-~~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 362 KWL-ESNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred HHH-HhcCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 676 45678899998855432 3478999999999999997543
No 268
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=44.42 E-value=11 Score=29.69 Aligned_cols=12 Identities=17% Similarity=0.786 Sum_probs=8.7
Q ss_pred cccccccccccc
Q psy2207 86 MCQRCTSVFTVT 97 (305)
Q Consensus 86 ~C~~C~~~f~~~ 97 (305)
.|..|+..|.+.
T Consensus 72 ~C~~CG~~~~~~ 83 (135)
T PRK03824 72 KCRNCGNEWSLK 83 (135)
T ss_pred ECCCCCCEEecc
Confidence 588888777654
No 269
>KOG0317|consensus
Probab=44.27 E-value=7.6 Score=34.47 Aligned_cols=31 Identities=19% Similarity=0.507 Sum_probs=22.9
Q ss_pred CcccccccccccccccccccccccceeccCccCCe
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
+..|..|-. ..+---|--||.+||+.|--.+
T Consensus 239 ~~kC~LCLe----~~~~pSaTpCGHiFCWsCI~~w 269 (293)
T KOG0317|consen 239 TRKCSLCLE----NRSNPSATPCGHIFCWSCILEW 269 (293)
T ss_pred CCceEEEec----CCCCCCcCcCcchHHHHHHHHH
Confidence 567888865 3334578999999999997544
No 270
>KOG1170|consensus
Probab=43.54 E-value=16 Score=37.22 Aligned_cols=95 Identities=22% Similarity=0.360 Sum_probs=60.8
Q ss_pred CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecC--CC
Q psy2207 7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDS--RV 84 (305)
Q Consensus 7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~--~~ 84 (305)
..-+.++.|-|+++.|...+.|+.-.|+.+|+.++...... +-+... . ...+=.|+..+ ..
T Consensus 56 s~~n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q~~-----e~~s~~---------~---a~mphqw~Egnlpvs 118 (1099)
T KOG1170|consen 56 STNNPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQHL-----EFISPE---------N---AIMPHQWMEGNLPVS 118 (1099)
T ss_pred ccCCCCCCeeEecccHHhhhhccchhHHHHhhccccchhhc-----cccCCC---------c---ccCchhhhhcCCCcc
Confidence 34456889999999999999999999999999987643321 101110 0 01122343221 24
Q ss_pred cccccccccccccc--cccccccccceeccCccCCe
Q psy2207 85 SMCQRCTSVFTVTF--RRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 85 ~~C~~C~~~f~~~~--rrhhCr~cg~v~C~~Cs~~~ 118 (305)
..|..|..+-+..- ....|.-||-+|-..|-++.
T Consensus 119 skc~vc~k~cgs~~rlqd~rclwc~~~vh~~c~~~~ 154 (1099)
T KOG1170|consen 119 SKCSVCEKPCGSVLRLQDYRCLWCGCCVHDTCIGNL 154 (1099)
T ss_pred ccccccccccccccccCCcceEeeccEeehhhhhhH
Confidence 56888877665333 34778888888877766543
No 271
>PF15408 PH_7: Pleckstrin homology domain
Probab=42.97 E-value=17 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=22.6
Q ss_pred eEEEEEece-EEEEEeCCHHHHHHHHHHHHH
Q psy2207 14 EFSVIAISR-SFTLRARSANERLEWIDAIQT 43 (305)
Q Consensus 14 ~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ 43 (305)
.|...++++ ..-+.|+|.+-.+.|+++++.
T Consensus 65 G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 65 GFLMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEEEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 344444544 666889999999999999875
No 272
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=42.75 E-value=11 Score=23.44 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=27.3
Q ss_pred Cccccccccccccc-ccccccccccceeccCccCC
Q psy2207 84 VSMCQRCTSVFTVT-FRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 84 ~~~C~~C~~~f~~~-~rrhhCr~cg~v~C~~Cs~~ 117 (305)
.+.|..|...+... .....|..|+.++-.+|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 45799999987643 45678999999999999864
No 273
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=42.61 E-value=13 Score=30.13 Aligned_cols=28 Identities=32% Similarity=0.886 Sum_probs=19.6
Q ss_pred cCCCccccccccccccccccccccccccee
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVV 110 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~ 110 (305)
......|..|... .-.|-|||+.||+.|
T Consensus 45 ~~~~~~C~~C~~~--kp~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 45 NGELKYCSTCKII--KPPRSHHCRVCNRCV 72 (174)
T ss_pred CCCCEECcccCCc--CCCcceecccccccc
Confidence 3445678888764 234679999998874
No 274
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=42.08 E-value=19 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=22.0
Q ss_pred CcccccccccccccccccccccccceeccCccC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~ 116 (305)
.+.|..|+++++. ..-.--.||.++...|..
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 5579999998864 222333578889888874
No 275
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=41.36 E-value=6 Score=33.16 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=37.1
Q ss_pred ecCCCcccccccccccccccccccccccceeccCccCCeeccc---------CCCCccccccHhhHHHHHh
Q psy2207 80 PDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLE---------YKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 80 ~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~---------~~~~~~~rvC~~C~~~~~~ 141 (305)
...+.-.|.+|...+..- .--.||.++|+.|........ +...+....|..|...+..
T Consensus 14 ~~~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 344456899999877422 224799999999996542211 1113445689999777753
No 276
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=41.04 E-value=18 Score=19.82 Aligned_cols=6 Identities=33% Similarity=1.287 Sum_probs=2.8
Q ss_pred cccccc
Q psy2207 87 CQRCTS 92 (305)
Q Consensus 87 C~~C~~ 92 (305)
|..|++
T Consensus 3 CP~C~~ 8 (26)
T PF10571_consen 3 CPECGA 8 (26)
T ss_pred CCCCcC
Confidence 444444
No 277
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=40.84 E-value=27 Score=22.94 Aligned_cols=32 Identities=28% Similarity=0.666 Sum_probs=22.2
Q ss_pred ccc--cccccccc----cccccccccccceeccCccCC
Q psy2207 86 MCQ--RCTSVFTV----TFRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 86 ~C~--~C~~~f~~----~~rrhhCr~cg~v~C~~Cs~~ 117 (305)
-|. .|...... ....-.|..||..+|..|...
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~ 57 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVP 57 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCc
Confidence 455 66554432 345678999999999999754
No 278
>KOG0978|consensus
Probab=40.57 E-value=3.6 Score=41.18 Aligned_cols=47 Identities=21% Similarity=0.518 Sum_probs=33.5
Q ss_pred CCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHH
Q psy2207 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYL 139 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~ 139 (305)
..-.|..|...+... -=-.||.+||..|...+. ...+|-|+.|...+
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~------etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRY------ETRQRKCPKCNAAF 688 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHH------HHhcCCCCCCCCCC
Confidence 355789998766421 114799999999997653 45789999995544
No 279
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.63 E-value=6.3 Score=35.60 Aligned_cols=49 Identities=27% Similarity=0.511 Sum_probs=30.8
Q ss_pred ccccccccccccccc---ccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 85 SMCQRCTSVFTVTFR---RHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 85 ~~C~~C~~~f~~~~r---rhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
.+|..|...=.+-.+ -.+ .||..+|..|.......+ ...|..|...+..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~------~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRG------SGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCC------CCCCCCCCCccch
Confidence 479999884222221 233 799999999998754222 2268888665553
No 280
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=38.88 E-value=17 Score=24.42 Aligned_cols=27 Identities=37% Similarity=0.772 Sum_probs=17.1
Q ss_pred cccccccccccccccccccccceeccCccC
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~ 116 (305)
|..|... ..+.+.|..||.+.|++=+.
T Consensus 1 C~~C~~~---~~~lw~CL~Cg~~~C~~~~~ 27 (63)
T PF02148_consen 1 CSVCGST---NSNLWLCLTCGYVGCGRYSN 27 (63)
T ss_dssp -SSSHTC---SSSEEEETTTS-EEETTTST
T ss_pred CCCCCCc---CCceEEeCCCCcccccCCcC
Confidence 4555532 24568899999999986443
No 281
>KOG0689|consensus
Probab=38.48 E-value=41 Score=32.18 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=29.7
Q ss_pred cCCCceEEEEEeceE----EEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207 9 EDYNNEFSVIAISRS----FTLRARSANERLEWIDAIQTAIKE 47 (305)
Q Consensus 9 ~~~~~~f~i~~~~ks----f~~~a~s~~ek~~W~~~i~~ai~~ 47 (305)
++-.=.|.|-...+. |.++|.|.+++.+|+.+|......
T Consensus 320 ~~s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~~ 362 (448)
T KOG0689|consen 320 DNSASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLWQ 362 (448)
T ss_pred CCCCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHHH
Confidence 333446666665554 999999999999999999876544
No 282
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=38.37 E-value=19 Score=25.96 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=19.9
Q ss_pred Ccccccccccccc---cccccccccccceeccC
Q psy2207 84 VSMCQRCTSVFTV---TFRRHHCRACGKVVCGP 113 (305)
Q Consensus 84 ~~~C~~C~~~f~~---~~rrhhCr~cg~v~C~~ 113 (305)
...|..|+.+ .+ ..-.+-|+.||..+=+-
T Consensus 35 ~~~Cp~C~~~-~VkR~a~GIW~C~kCg~~fAGg 66 (89)
T COG1997 35 KHVCPFCGRT-TVKRIATGIWKCRKCGAKFAGG 66 (89)
T ss_pred CCcCCCCCCc-ceeeeccCeEEcCCCCCeeccc
Confidence 4579999987 32 23468888888876543
No 283
>KOG4739|consensus
Probab=38.04 E-value=13 Score=32.11 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=28.9
Q ss_pred ccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
+|-.|+..=+ ...-+=-+|+.|||..|.+.-. .++|.-|-..+..
T Consensus 5 hCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~---------~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS--QDPFFLTACRHVFCEPCLKASS---------PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC--CCceeeeechhhhhhhhcccCC---------ccccccccceeee
Confidence 5776655222 3333445899999999997532 1188888777543
No 284
>PRK05580 primosome assembly protein PriA; Validated
Probab=37.89 E-value=12 Score=37.86 Aligned_cols=15 Identities=47% Similarity=1.123 Sum_probs=9.1
Q ss_pred ccccccce-eccCccC
Q psy2207 102 HCRACGKV-VCGPCSD 116 (305)
Q Consensus 102 hCr~cg~v-~C~~Cs~ 116 (305)
.|+.||.+ .|..|+.
T Consensus 383 ~C~~Cg~~~~C~~C~~ 398 (679)
T PRK05580 383 LCRDCGWVAECPHCDA 398 (679)
T ss_pred EhhhCcCccCCCCCCC
Confidence 46666655 3666664
No 285
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=37.36 E-value=20 Score=21.09 Aligned_cols=8 Identities=50% Similarity=1.252 Sum_probs=4.2
Q ss_pred ccccccce
Q psy2207 102 HCRACGKV 109 (305)
Q Consensus 102 hCr~cg~v 109 (305)
.|+.||.+
T Consensus 22 ~C~~C~Y~ 29 (35)
T PF02150_consen 22 ACRTCGYE 29 (35)
T ss_dssp EESSSS-E
T ss_pred CCCCCCCc
Confidence 46666654
No 286
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=36.72 E-value=16 Score=28.91 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=18.9
Q ss_pred cccccccccceeccCccCCeecc
Q psy2207 99 RRHHCRACGKVVCGPCSDYLAPL 121 (305)
Q Consensus 99 rrhhCr~cg~v~C~~Cs~~~~~l 121 (305)
|+.-|..|-.+||.+|..-|...
T Consensus 130 ~~g~C~rCEILfCkKC~tLHs~p 152 (173)
T PF15470_consen 130 RRGGCARCEILFCKKCRTLHSHP 152 (173)
T ss_pred CCCCccceeeeeehhhccccCch
Confidence 45689999999999999887533
No 287
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=36.65 E-value=17 Score=22.76 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=13.6
Q ss_pred Cccccccccccccccccccccccc
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACG 107 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg 107 (305)
...|..|+.. .+...|+||..|.
T Consensus 4 ~~~C~~C~~~-~i~g~Ry~C~~C~ 26 (46)
T PF00569_consen 4 GYTCDGCGTD-PIIGVRYHCLVCP 26 (46)
T ss_dssp SCE-SSS-SS-SEESSEEEESSSS
T ss_pred CeECcCCCCC-cCcCCeEECCCCC
Confidence 3468888873 4456678886653
No 288
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=36.63 E-value=20 Score=37.90 Aligned_cols=43 Identities=26% Similarity=0.508 Sum_probs=33.2
Q ss_pred eecCCCcccccccccccccc---cccccccccceeccCccCCeecc
Q psy2207 79 IPDSRVSMCQRCTSVFTVTF---RRHHCRACGKVVCGPCSDYLAPL 121 (305)
Q Consensus 79 ~~d~~~~~C~~C~~~f~~~~---rrhhCr~cg~v~C~~Cs~~~~~l 121 (305)
+..-....|.+|+..-++.. --..|.-||.-||..|-.|.+.=
T Consensus 12 ~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~e 57 (1079)
T PLN02638 12 MKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKD 57 (1079)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhc
Confidence 45666779999998765442 23789999999999999886644
No 289
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=36.37 E-value=17 Score=22.56 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=14.3
Q ss_pred ccccccccccccccccccccccc
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGK 108 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~ 108 (305)
.|-.|+. +++.-.|++|..|.-
T Consensus 2 ~CDgCg~-~PI~G~RykC~~C~d 23 (43)
T cd02342 2 QCDGCGV-LPITGPRYKSKVKED 23 (43)
T ss_pred CCCCCCC-CcccccceEeCCCCC
Confidence 4667774 456778888866543
No 290
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=36.21 E-value=7 Score=23.26 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=5.8
Q ss_pred CccccccHhhHH
Q psy2207 126 FRNFRVCEECYH 137 (305)
Q Consensus 126 ~~~~rvC~~C~~ 137 (305)
.+..-+|+.|-.
T Consensus 18 P~~~~~Cd~cg~ 29 (36)
T PF05191_consen 18 PKVEGVCDNCGG 29 (36)
T ss_dssp -SSTTBCTTTTE
T ss_pred CCCCCccCCCCC
Confidence 344456666543
No 291
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=36.07 E-value=42 Score=34.27 Aligned_cols=34 Identities=26% Similarity=0.649 Sum_probs=23.9
Q ss_pred ccccccccccccc--ccccccccccce-----eccCccCCe
Q psy2207 85 SMCQRCTSVFTVT--FRRHHCRACGKV-----VCGPCSDYL 118 (305)
Q Consensus 85 ~~C~~C~~~f~~~--~rrhhCr~cg~v-----~C~~Cs~~~ 118 (305)
..|..|..++++- .+.--|+-||.. .|.+|.+.+
T Consensus 445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 445 AECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEH 485 (730)
T ss_pred ccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCe
Confidence 4577777766643 345678888887 788888874
No 292
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.87 E-value=56 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=27.2
Q ss_pred CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46 (305)
Q Consensus 12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~ 46 (305)
.+-|..+--.-+..|..+.+.||.-|++++-+|-.
T Consensus 77 ~~ff~avkegd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 77 RHFFNAVKEGDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred hhhhheeccCcEEEEeccchHHHHHHHHHHHHHcC
Confidence 34455565666788889999999999999987754
No 293
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=35.83 E-value=8.2 Score=22.82 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=8.4
Q ss_pred cccccccc-cccccccc
Q psy2207 87 CQRCTSVF-TVTFRRHH 102 (305)
Q Consensus 87 C~~C~~~f-~~~~rrhh 102 (305)
|..|.+.+ ...+||+|
T Consensus 2 C~~C~~Ey~~p~~RR~~ 18 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFH 18 (35)
T ss_dssp -HHHHHHHCSTTSTTTT
T ss_pred CHHHHHHHcCCCCCccc
Confidence 56666654 34566654
No 294
>KOG1311|consensus
Probab=35.52 E-value=17 Score=32.65 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=20.3
Q ss_pred CCcccccccccccccccccccccccceecc
Q psy2207 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCG 112 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~ 112 (305)
+...|..|..- .-.|-|||+.|++.|-.
T Consensus 112 ~~~~C~~C~~~--rPpRs~HCsvC~~CV~r 139 (299)
T KOG1311|consen 112 EWKYCDTCQLY--RPPRSSHCSVCNNCVLR 139 (299)
T ss_pred ceEEcCcCccc--CCCCcccchhhcccccc
Confidence 35688888873 23456999999988654
No 295
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=35.01 E-value=22 Score=35.79 Aligned_cols=30 Identities=30% Similarity=0.795 Sum_probs=18.5
Q ss_pred Ccccccccccccccccccccccccce------eccCccCC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDY 117 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v------~C~~Cs~~ 117 (305)
+..|..|+.++.. -.|..||.- ||.+|-..
T Consensus 15 akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 15 NRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CccccccCCCCCC----CcCCCCCCCCCcccccccccCCc
Confidence 5567777777642 247777766 56655543
No 296
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=34.27 E-value=17 Score=33.55 Aligned_cols=9 Identities=33% Similarity=1.158 Sum_probs=3.5
Q ss_pred cccccccce
Q psy2207 101 HHCRACGKV 109 (305)
Q Consensus 101 hhCr~cg~v 109 (305)
.-|..||.-
T Consensus 286 FkC~~C~~R 294 (344)
T PF09332_consen 286 FKCKDCGNR 294 (344)
T ss_dssp EE-T-TS-E
T ss_pred EECCCCCCe
Confidence 457776653
No 297
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=33.93 E-value=22 Score=26.39 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=14.5
Q ss_pred ccccccccccccccccccccccce
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKV 109 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v 109 (305)
.|..|+..+........|+.||..
T Consensus 2 fC~~Cg~~l~~~~~~~~C~~C~~~ 25 (104)
T TIGR01384 2 FCPKCGSLMTPKNGVYVCPSCGYE 25 (104)
T ss_pred CCcccCcccccCCCeEECcCCCCc
Confidence 488888877544334555555544
No 298
>KOG3551|consensus
Probab=33.46 E-value=71 Score=29.87 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=37.0
Q ss_pred ceEEEecCeEEEEc-cccCCcceeEEEEeCCc-eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 248 LLSIPVLGYELEAL-NEQDNFKYVFQLKHQGQ-DPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 248 ~~~i~L~~~~v~~~-~~~~~~~~~F~l~~~~~-~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
...|+|.-+-|... ...+--...|+|..+.. .+.+++|.+..+++.|..||..++.
T Consensus 215 ~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~ 272 (506)
T KOG3551|consen 215 RKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVN 272 (506)
T ss_pred ccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHh
Confidence 45677754444311 11111225899987544 4679999999999999999986654
No 299
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.29 E-value=29 Score=36.40 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=31.5
Q ss_pred cCCCcccccccccccccccccccccccce-----eccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKV-----VCGPCSDYLAPLEYKKFRNFRVCEECYHYLV 140 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v-----~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~ 140 (305)
......|..|+... -...|.+||.. +|..|-.... .-.|..|-..+.
T Consensus 623 EVg~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~~~~---------~y~CPKCG~El~ 674 (1121)
T PRK04023 623 EIGRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGIEVE---------EDECEKCGREPT 674 (1121)
T ss_pred cccCccCCCCCCcC----CcccCCCCCCCCCcceeCccccCcCC---------CCcCCCCCCCCC
Confidence 34577999999974 33689999964 8999943211 134877755554
No 300
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=33.17 E-value=19 Score=29.71 Aligned_cols=21 Identities=29% Similarity=0.882 Sum_probs=12.1
Q ss_pred ccccccccccccccccccccccc
Q psy2207 85 SMCQRCTSVFTVTFRRHHCRACG 107 (305)
Q Consensus 85 ~~C~~C~~~f~~~~rrhhCr~cg 107 (305)
-.|..|+..|+ ...+-|..||
T Consensus 140 ~rC~GC~~~f~--~~~~~Cp~CG 160 (177)
T COG1439 140 LRCHGCKRIFP--EPKDFCPICG 160 (177)
T ss_pred EEEecCceecC--CCCCcCCCCC
Confidence 35677777666 4445555554
No 301
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=33.04 E-value=26 Score=31.52 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=17.9
Q ss_pred CCCccccccccccccccccccccccccee
Q psy2207 82 SRVSMCQRCTSVFTVTFRRHHCRACGKVV 110 (305)
Q Consensus 82 ~~~~~C~~C~~~f~~~~rrhhCr~cg~v~ 110 (305)
..+..|..|+. +-.|.+.|-.||.++
T Consensus 307 ~tS~~C~~cg~---~~~r~~~C~~cg~~~ 332 (364)
T COG0675 307 YTSKTCPCCGH---LSGRLFKCPRCGFVH 332 (364)
T ss_pred CCcccccccCC---ccceeEECCCCCCee
Confidence 44578999999 335566777777653
No 302
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.90 E-value=9.1 Score=26.05 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=35.6
Q ss_pred ccccccccccccccccccccccceeccCccCCe--------ecccC---CCCccccccHhhHHHHH
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL--------APLEY---KKFRNFRVCEECYHYLV 140 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~--------~~l~~---~~~~~~rvC~~C~~~~~ 140 (305)
.|-+|...=..+.-..-|..||.-+|-...-+. .|+|. .+.-+.-+|..|++.+.
T Consensus 9 KCY~C~eeGKDtdAV~iCIVCG~GlC~EHli~eE~p~w~G~YP~p~k~~K~~lpRilC~~C~~a~~ 74 (76)
T COG4855 9 KCYDCAEEGKDTDAVGICIVCGMGLCMEHLIREETPMWGGGYPFPAKKLKKTLPRILCVECHEAIK 74 (76)
T ss_pred HHHHHHHhCCCcccEEEEEEeCchHHHHHHHhhhcccccCCCCCcchhhhccCCceeeHHHHHHhh
Confidence 355565544455556789999999997665332 22222 13567889999998875
No 303
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=32.89 E-value=19 Score=32.65 Aligned_cols=29 Identities=28% Similarity=0.632 Sum_probs=19.3
Q ss_pred cCCCcccccccccccccccccccccccceec
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVC 111 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C 111 (305)
+.....|..|..- --.|-|||+.|+++|=
T Consensus 106 ~~~~~~C~~C~~~--KP~RS~HC~~Cn~CV~ 134 (309)
T COG5273 106 FGTENFCSTCNIY--KPPRSHHCSICNRCVL 134 (309)
T ss_pred cccceeccccccc--cCCCCccchhhcchhh
Confidence 3445678888761 1246699999998853
No 304
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=32.88 E-value=1.8e+02 Score=22.19 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=32.9
Q ss_pred CCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIKENE 49 (305)
Q Consensus 10 ~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~~~~ 49 (305)
+..|+..|... ++-|.|.++++-+-.+|...|.++-.+..
T Consensus 62 K~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~Sq 102 (116)
T cd01240 62 KEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRESQ 102 (116)
T ss_pred ccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 45678877764 66799999999999999999999876644
No 305
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=32.70 E-value=1.9e+02 Score=20.93 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=31.7
Q ss_pred eEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 249 LSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 249 ~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
.+-+|.................|.|.... .|++.|++.++....+..|-+.
T Consensus 37 ktW~L~eL~~I~~~~~~~~~~~F~l~~~k--~y~W~a~s~~Ek~~Fi~~L~k~ 87 (91)
T PF15277_consen 37 KTWDLDELKAIDGINPDKDTPEFDLTFDK--PYYWEASSAKEKNTFIRSLWKL 87 (91)
T ss_dssp EEEEGGG--EEEE-SSS--TTEEEEESSS--EEEEEESSHHHHHHHHHHHHHH
T ss_pred eEEehhhceeeeeecCCCCCcCEEEEECC--CcEEEeCCHHHHHHHHHHHHHH
Confidence 34555544443222222122478887643 7999999999999999998654
No 306
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=32.29 E-value=29 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=21.4
Q ss_pred Cccccccccc-cc-ccccccccccccceeccCcc
Q psy2207 84 VSMCQRCTSV-FT-VTFRRHHCRACGKVVCGPCS 115 (305)
Q Consensus 84 ~~~C~~C~~~-f~-~~~rrhhCr~cg~v~C~~Cs 115 (305)
.-.|..|+.. +. .....++|+.||..|-+..-
T Consensus 36 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy 69 (90)
T PTZ00255 36 KYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGAW 69 (90)
T ss_pred CccCCCCCCCceeeeeeEEEEcCCCCCEEeCCcc
Confidence 4579999752 11 23356899999998876543
No 307
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=32.12 E-value=24 Score=25.76 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=19.9
Q ss_pred Cccccccccccc--ccccccccccccceeccCc
Q psy2207 84 VSMCQRCTSVFT--VTFRRHHCRACGKVVCGPC 114 (305)
Q Consensus 84 ~~~C~~C~~~f~--~~~rrhhCr~cg~v~C~~C 114 (305)
.-.|..|+..-- ...-.++|+.||..|-+.-
T Consensus 35 ky~Cp~Cgk~~vkR~a~GIW~C~~C~~~~AGGA 67 (90)
T PF01780_consen 35 KYTCPFCGKTSVKRVATGIWKCKKCGKKFAGGA 67 (90)
T ss_dssp -BEESSSSSSEEEEEETTEEEETTTTEEEE-BS
T ss_pred CCcCCCCCCceeEEeeeEEeecCCCCCEEeCCC
Confidence 446899988441 1234689999998887543
No 308
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=32.08 E-value=24 Score=22.10 Aligned_cols=30 Identities=23% Similarity=0.700 Sum_probs=20.5
Q ss_pred ccccccccccccccccccccc-cceeccCccC
Q psy2207 86 MCQRCTSVFTVTFRRHHCRAC-GKVVCGPCSD 116 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~c-g~v~C~~Cs~ 116 (305)
.|-.|+.. .+...|++|..| ..-+|..|-.
T Consensus 2 ~Cd~C~~~-~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQ-GIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCC-CcccCeEECCCCCCccchHHHhC
Confidence 47777752 456778899888 4557777754
No 309
>PRK12496 hypothetical protein; Provisional
Probab=31.90 E-value=26 Score=28.69 Aligned_cols=10 Identities=20% Similarity=0.959 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy2207 86 MCQRCTSVFT 95 (305)
Q Consensus 86 ~C~~C~~~f~ 95 (305)
.|..|+..|.
T Consensus 129 ~C~gC~~~~~ 138 (164)
T PRK12496 129 VCKGCKKKYP 138 (164)
T ss_pred ECCCCCcccc
Confidence 3555555554
No 310
>KOG3520|consensus
Probab=31.80 E-value=41 Score=35.82 Aligned_cols=34 Identities=15% Similarity=0.415 Sum_probs=26.8
Q ss_pred eEEEEeC--CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207 270 VFQLKHQ--GQDPLVFGADNEQSYERWMKAMREATT 303 (305)
Q Consensus 270 ~F~l~~~--~~~~~~f~a~s~e~~~~Wi~al~~a~~ 303 (305)
.|-|... +-.+|-+.|.|.++.+.|++.|+.|+.
T Consensus 687 ~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~ 722 (1167)
T KOG3520|consen 687 FFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVA 722 (1167)
T ss_pred eEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence 4555443 345799999999999999999998764
No 311
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=14 Score=32.40 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=22.2
Q ss_pred CcccccccccccccccccccccccceeccCccCC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~ 117 (305)
.-.|..|...- -.-.|..||.+||..|.-.
T Consensus 215 d~kC~lC~e~~----~~ps~t~CgHlFC~~Cl~~ 244 (271)
T COG5574 215 DYKCFLCLEEP----EVPSCTPCGHLFCLSCLLI 244 (271)
T ss_pred ccceeeeeccc----CCcccccccchhhHHHHHH
Confidence 45688887632 2346899999999999854
No 312
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=31.70 E-value=24 Score=27.85 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=18.8
Q ss_pred Ccccccccccccccc---cc--cccccccce
Q psy2207 84 VSMCQRCTSVFTVTF---RR--HHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~---rr--hhCr~cg~v 109 (305)
--.|..|+.|-+.+. |. .+|.+||..
T Consensus 97 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 127 (133)
T TIGR00311 97 YVICRECNRPDTRIIKEGRVSLLKCEACGAK 127 (133)
T ss_pred eEECCCCCCCCcEEEEeCCeEEEecccCCCC
Confidence 347999999998543 33 478888865
No 313
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.49 E-value=13 Score=32.05 Aligned_cols=31 Identities=26% Similarity=0.809 Sum_probs=23.0
Q ss_pred cccccccccccccccccccccccce------eccCccCC
Q psy2207 85 SMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDY 117 (305)
Q Consensus 85 ~~C~~C~~~f~~~~rrhhCr~cg~v------~C~~Cs~~ 117 (305)
..|..|...+..+ .++|..||.. +|..|...
T Consensus 21 ~lC~~C~~~l~~~--~~~C~~Cg~~~~~~~~~C~~C~~~ 57 (227)
T PRK11595 21 GICSVCSRALRTL--KTCCPQCGLPATHPHLPCGRCLQK 57 (227)
T ss_pred cccHHHHhhCCcc--cCcCccCCCcCCCCCCCcHHHHcC
Confidence 4688888877754 4789999974 48888654
No 314
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=31.24 E-value=29 Score=25.65 Aligned_cols=35 Identities=31% Similarity=0.644 Sum_probs=26.7
Q ss_pred cccccccccceeccC--ccCCeecccCCCCccccccHhhHHHHHhc
Q psy2207 99 RRHHCRACGKVVCGP--CSDYLAPLEYKKFRNFRVCEECYHYLVQE 142 (305)
Q Consensus 99 rrhhCr~cg~v~C~~--Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~ 142 (305)
-..+|-.||+.||.. ||-+ -..|.|..|...-...
T Consensus 48 LGa~CS~C~~~VC~~~~CSlF---------YtkrFC~pC~~~~~~~ 84 (97)
T PF10170_consen 48 LGAPCSICGKPVCVGQDCSLF---------YTKRFCLPCVKRNLKA 84 (97)
T ss_pred ECccccccCCceEcCCCccEE---------eeCceeHHHHHHHHHH
Confidence 357899999999975 8865 3568999997765543
No 315
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=30.94 E-value=16 Score=21.64 Aligned_cols=29 Identities=31% Similarity=0.667 Sum_probs=18.3
Q ss_pred cccccccccccccccccccccceeccCccCCe
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
|..|...+ .....-..||..+|..|....
T Consensus 2 C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~ 30 (45)
T cd00162 2 CPICLEEF---REPVVLLPCGHVFCRSCIDKW 30 (45)
T ss_pred CCcCchhh---hCceEecCCCChhcHHHHHHH
Confidence 66777766 222333458888888887643
No 316
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=30.77 E-value=35 Score=21.38 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=29.9
Q ss_pred cccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhH
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECY 136 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~ 136 (305)
|..|+. .......-.|-.|+..+-..|.+........... .=.|..|-
T Consensus 2 C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~-~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSG-DWYCPNCR 49 (51)
T ss_dssp BTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSS-SBSSHHHH
T ss_pred CcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCCCC-cEECcCCc
Confidence 667777 3334556789999999999999876432211111 55666663
No 317
>KOG4095|consensus
Probab=30.77 E-value=22 Score=28.31 Aligned_cols=21 Identities=29% Similarity=0.678 Sum_probs=19.2
Q ss_pred CCCceEEEEEEECCEEEEEcc
Q psy2207 221 GRNWKRYWFVLKDQVMYKYKA 241 (305)
Q Consensus 221 ~~~wkrrw~vL~~~~L~~y~~ 241 (305)
.+.|.+.|+.+.+..|.+|+.
T Consensus 28 VRrWEKKwVtvgDTslRIyKW 48 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKW 48 (165)
T ss_pred HHHHhhheEeecccceEEEEe
Confidence 468999999999999999995
No 318
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=30.63 E-value=31 Score=25.24 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=21.4
Q ss_pred Ccccccccccc-c-ccccccccccccceeccCcc
Q psy2207 84 VSMCQRCTSVF-T-VTFRRHHCRACGKVVCGPCS 115 (305)
Q Consensus 84 ~~~C~~C~~~f-~-~~~rrhhCr~cg~v~C~~Cs 115 (305)
.-.|..|+..- . .....++|+.||..|-+..-
T Consensus 35 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy 68 (91)
T TIGR00280 35 KYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGGAY 68 (91)
T ss_pred CccCCCCCCCceEEEeeEEEEcCCCCCEEeCCcc
Confidence 45799997522 1 23446899999998876543
No 319
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=30.58 E-value=31 Score=25.17 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=21.7
Q ss_pred Cccccccccc-cc-ccccccccccccceeccCccC
Q psy2207 84 VSMCQRCTSV-FT-VTFRRHHCRACGKVVCGPCSD 116 (305)
Q Consensus 84 ~~~C~~C~~~-f~-~~~rrhhCr~cg~v~C~~Cs~ 116 (305)
.-.|..|+.. +. .....++|+.||..|-+..-.
T Consensus 36 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy~ 70 (90)
T PRK03976 36 KHVCPVCGRPKVKRVGTGIWECRKCGAKFAGGAYT 70 (90)
T ss_pred CccCCCCCCCceEEEEEEEEEcCCCCCEEeCCccc
Confidence 4579999642 21 234469999999998765443
No 320
>KOG3521|consensus
Probab=30.53 E-value=75 Score=31.85 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=32.0
Q ss_pred CceEEEEE------eceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207 12 NNEFSVIA------ISRSFTLRARSANERLEWIDAIQTAIKENE 49 (305)
Q Consensus 12 ~~~f~i~~------~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~ 49 (305)
+|+|.++- ..-.|.+++..++++..|.+.|+.|.++.+
T Consensus 487 pnsf~lVhLtEFh~a~~ayt~hcs~p~d~~~W~D~l~~Aq~~~Q 530 (846)
T KOG3521|consen 487 PNSFLLVHLTEFHTAQAAYTMHCSGPEDTLRWTDMLKMAQDELQ 530 (846)
T ss_pred CCceEEEeechhhhhhhhheeecCChhhHHHHHHHHHHHHHHHH
Confidence 57777664 556899999999999999999999988754
No 321
>KOG3549|consensus
Probab=30.16 E-value=76 Score=29.21 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=38.0
Q ss_pred CCCceEEEEEece--EEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy2207 10 DYNNEFSVIAISR--SFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNR 58 (305)
Q Consensus 10 ~~~~~f~i~~~~k--sf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~ 58 (305)
-..|+|+|..-+- +-.+...+.++-.+|+++|.+-|.+....++...++
T Consensus 223 lRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~~LT~~nmK~~Nr 273 (505)
T KOG3549|consen 223 LRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIVGLTHLNMKLYNR 273 (505)
T ss_pred hhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3579999998665 667899999999999999999887765544444443
No 322
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=30.16 E-value=27 Score=18.90 Aligned_cols=7 Identities=29% Similarity=1.175 Sum_probs=3.5
Q ss_pred ccccccc
Q psy2207 86 MCQRCTS 92 (305)
Q Consensus 86 ~C~~C~~ 92 (305)
.|..|++
T Consensus 4 ~Cp~Cg~ 10 (26)
T PF13248_consen 4 FCPNCGA 10 (26)
T ss_pred CCcccCC
Confidence 3555555
No 323
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=29.90 E-value=28 Score=20.48 Aligned_cols=7 Identities=29% Similarity=1.009 Sum_probs=1.9
Q ss_pred ccccccc
Q psy2207 86 MCQRCTS 92 (305)
Q Consensus 86 ~C~~C~~ 92 (305)
.|..|+.
T Consensus 13 rC~~Cg~ 19 (37)
T PF12172_consen 13 RCRDCGR 19 (37)
T ss_dssp E-TTT--
T ss_pred EcCCCCC
Confidence 4444444
No 324
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=29.88 E-value=31 Score=22.67 Aligned_cols=27 Identities=30% Similarity=0.694 Sum_probs=14.4
Q ss_pred ccccccc---cccccccccccccccceecc
Q psy2207 86 MCQRCTS---VFTVTFRRHHCRACGKVVCG 112 (305)
Q Consensus 86 ~C~~C~~---~f~~~~rrhhCr~cg~v~C~ 112 (305)
.|.+|.. -|+-......|..||.++|.
T Consensus 9 kCp~C~~~q~vFSha~t~V~C~~Cg~~L~~ 38 (55)
T PF01667_consen 9 KCPGCYNIQTVFSHAQTVVKCVVCGTVLAQ 38 (55)
T ss_dssp E-TTT-SEEEEETT-SS-EE-SSSTSEEEE
T ss_pred ECCCCCCeeEEEecCCeEEEcccCCCEecC
Confidence 5777876 34444556677777777773
No 325
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=29.86 E-value=28 Score=23.24 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=17.1
Q ss_pred cccccccc---ccccccccccccccceecc
Q psy2207 86 MCQRCTSV---FTVTFRRHHCRACGKVVCG 112 (305)
Q Consensus 86 ~C~~C~~~---f~~~~rrhhCr~cg~v~C~ 112 (305)
.|.+|... |+-......|..||.++|.
T Consensus 13 kCp~C~n~q~vFsha~t~V~C~~Cg~~L~~ 42 (59)
T PRK00415 13 KCPDCGNEQVVFSHASTVVRCLVCGKTLAE 42 (59)
T ss_pred ECCCCCCeEEEEecCCcEEECcccCCCccc
Confidence 57888763 4444555677777777653
No 326
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.78 E-value=36 Score=22.70 Aligned_cols=33 Identities=24% Similarity=0.581 Sum_probs=23.4
Q ss_pred Ccccccccccccc--cccccccccccceeccCccC
Q psy2207 84 VSMCQRCTSVFTV--TFRRHHCRACGKVVCGPCSD 116 (305)
Q Consensus 84 ~~~C~~C~~~f~~--~~rrhhCr~cg~v~C~~Cs~ 116 (305)
...|..|+..... ..-.+-|.+||.++=.+|..
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~ 43 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAK 43 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhh
Confidence 4578889887643 33468899999776666654
No 327
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=29.76 E-value=32 Score=21.54 Aligned_cols=25 Identities=32% Similarity=0.836 Sum_probs=17.7
Q ss_pred cccccccccccccccccccccceeccCcc
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCS 115 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs 115 (305)
|..|+..- ..+-|..||.+.|+.-.
T Consensus 2 C~~C~~~~----~l~~CL~C~~~~c~~~~ 26 (50)
T smart00290 2 CSVCGTIE----NLWLCLTCGQVGCGRYQ 26 (50)
T ss_pred cccCCCcC----CeEEecCCCCcccCCCC
Confidence 66676522 35789999999997654
No 328
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=29.38 E-value=13 Score=20.77 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=10.2
Q ss_pred ccccccccccccccccccccccceeccCc
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPC 114 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~~C 114 (305)
.|..|+.+... ....+|..|...+...|
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhc
Confidence 36677776554 45678888888877666
No 329
>KOG4047|consensus
Probab=29.17 E-value=24 Score=33.43 Aligned_cols=88 Identities=9% Similarity=-0.065 Sum_probs=45.6
Q ss_pred Cceeeeeeecc----CCCceEEEEEEECC------EEEEEccCc---cCccc----eEEEecCeEEE-Ecccc--CCcce
Q psy2207 210 SQHSGWLHKKS----GRNWKRYWFVLKDQ------VMYKYKASE---DIKAL----LSIPVLGYELE-ALNEQ--DNFKY 269 (305)
Q Consensus 210 ~~~~G~L~~~~----~~~wkrrw~vL~~~------~L~~y~~~~---d~~p~----~~i~L~~~~v~-~~~~~--~~~~~ 269 (305)
.++.|+++... .+.|.+.|++|..+ .|.+|.... ...+. ..+-|.++.-+ ..... ....+
T Consensus 8 ~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~~i~ 87 (429)
T KOG4047|consen 8 LVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGPGIT 87 (429)
T ss_pred ccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCCCce
Confidence 35677776654 67899999999643 333333222 11111 23334332222 11111 12234
Q ss_pred eEEEEeCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207 270 VFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300 (305)
Q Consensus 270 ~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~ 300 (305)
+|......+ +|-+++.-....|+++|..
T Consensus 88 ~~f~~~a~e---~~~~~q~l~~~~w~~~i~~ 115 (429)
T KOG4047|consen 88 AFFCDRAEE---LFNMLQDLMQANWINAIEE 115 (429)
T ss_pred EEEecchHH---HHHHHHHHHhhhhhhhhhh
Confidence 444432332 5667777777889999853
No 330
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=28.97 E-value=31 Score=22.58 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=17.2
Q ss_pred Cccccccccccccccccccccccccee
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVV 110 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~ 110 (305)
...|..|+.+|..-.-..-|..||...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPY 31 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcc
Confidence 457889999886555544555555443
No 331
>KOG1356|consensus
Probab=28.95 E-value=28 Score=35.64 Aligned_cols=37 Identities=30% Similarity=0.574 Sum_probs=29.6
Q ss_pred cCCCcccccccccccccccccccccccceeccCccCCee
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~ 119 (305)
.....+|..|.+ ++++-.+-|+.||..+|-.|...+.
T Consensus 226 ~g~~~mC~~C~~--tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 226 KGIREMCDRCET--TLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cCcchhhhhhcc--cccceeEEccccCCeeeecchhhcc
Confidence 345678999988 4445568899999999999998775
No 332
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=28.79 E-value=23 Score=31.84 Aligned_cols=37 Identities=22% Similarity=0.618 Sum_probs=28.2
Q ss_pred ecCCCccccccccccccc----------ccccccccccceeccCccC
Q psy2207 80 PDSRVSMCQRCTSVFTVT----------FRRHHCRACGKVVCGPCSD 116 (305)
Q Consensus 80 ~d~~~~~C~~C~~~f~~~----------~rrhhCr~cg~v~C~~Cs~ 116 (305)
..-..+.|..|..+|+.. ..|+.|..|-.-||..|--
T Consensus 358 ~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv 404 (421)
T COG5151 358 TNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV 404 (421)
T ss_pred CCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHH
Confidence 334567899999988643 4588999999999988854
No 333
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=28.63 E-value=39 Score=21.30 Aligned_cols=6 Identities=33% Similarity=1.403 Sum_probs=3.6
Q ss_pred cccccc
Q psy2207 87 CQRCTS 92 (305)
Q Consensus 87 C~~C~~ 92 (305)
|..|+.
T Consensus 3 Cp~Cg~ 8 (52)
T smart00661 3 CPKCGN 8 (52)
T ss_pred CCCCCC
Confidence 556655
No 334
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=28.62 E-value=39 Score=36.38 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=31.2
Q ss_pred Ccccccccccccccccccccccccce-----eccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKV-----VCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v-----~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
...|..|+..- ....|..||.. .|..|-.. +++..+. ...|..|...+..
T Consensus 667 ~rkCPkCG~~t----~~~fCP~CGs~te~vy~CPsCGae---v~~des~-a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTET----YENRCPDCGTHTEPVYVCPDCGAE---VPPDESG-RVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCcc----ccccCcccCCcCCCceeCccCCCc---cCCCccc-cccCCCCCCcccc
Confidence 46899998832 12378888865 48888764 2222233 5578888766653
No 335
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.60 E-value=21 Score=34.81 Aligned_cols=16 Identities=0% Similarity=0.094 Sum_probs=7.6
Q ss_pred EEEcCCHHHHHHHHHH
Q psy2207 282 VFGADNEQSYERWMKA 297 (305)
Q Consensus 282 ~f~a~s~e~~~~Wi~a 297 (305)
++.+++...++.-+..
T Consensus 470 l~k~~~~~~~~~~l~~ 485 (505)
T TIGR00595 470 LLKSKSFLVLQKLVNK 485 (505)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 4455555554444333
No 336
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=28.49 E-value=82 Score=31.96 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=26.2
Q ss_pred eceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207 20 ISRSFTLRARSANERLEWIDAIQTAIKEN 48 (305)
Q Consensus 20 ~~ksf~~~a~s~~ek~~W~~~i~~ai~~~ 48 (305)
.++-..+-|.+.||-..|+++|++|+++.
T Consensus 84 ~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 84 KYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred ccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 67788899999999999999999999863
No 337
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=28.42 E-value=26 Score=27.42 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=6.2
Q ss_pred cccccccccc
Q psy2207 86 MCQRCTSVFT 95 (305)
Q Consensus 86 ~C~~C~~~f~ 95 (305)
.|..|++.|.
T Consensus 3 ~Ct~Cg~~f~ 12 (131)
T PF09845_consen 3 QCTKCGRVFE 12 (131)
T ss_pred ccCcCCCCcC
Confidence 4666666665
No 338
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=28.39 E-value=31 Score=21.92 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=14.9
Q ss_pred cccccccccccccccccccccccc
Q psy2207 85 SMCQRCTSVFTVTFRRHHCRACGK 108 (305)
Q Consensus 85 ~~C~~C~~~f~~~~rrhhCr~cg~ 108 (305)
..|+.|....+. +-..||.||.
T Consensus 15 ~ICrkC~ARnp~--~A~~CRKCg~ 36 (48)
T PRK04136 15 KICMRCNARNPW--RATKCRKCGY 36 (48)
T ss_pred cchhcccCCCCc--cccccccCCC
Confidence 469999886543 3456887774
No 339
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=27.98 E-value=37 Score=22.28 Aligned_cols=21 Identities=24% Similarity=0.725 Sum_probs=12.2
Q ss_pred CCccccccccccccccc-cccccccc
Q psy2207 83 RVSMCQRCTSVFTVTFR-RHHCRACG 107 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~~r-rhhCr~cg 107 (305)
....|..|+. ..+ .|-|.+||
T Consensus 25 ~l~~C~~cG~----~~~~H~vc~~cG 46 (55)
T TIGR01031 25 TLVVCPNCGE----FKLPHRVCPSCG 46 (55)
T ss_pred cceECCCCCC----cccCeeECCccC
Confidence 3456888887 333 34455555
No 340
>PRK14873 primosome assembly protein PriA; Provisional
Probab=27.64 E-value=25 Score=35.54 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=19.3
Q ss_pred ccccccccccccc--ccccccccccce----eccCccCCe
Q psy2207 85 SMCQRCTSVFTVT--FRRHHCRACGKV----VCGPCSDYL 118 (305)
Q Consensus 85 ~~C~~C~~~f~~~--~rrhhCr~cg~v----~C~~Cs~~~ 118 (305)
..|..|..+.++- ..+-.|+-||.. .|..|.+..
T Consensus 393 ~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 393 ARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred eECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCc
Confidence 3566666655542 224567777764 566666553
No 341
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=27.61 E-value=1.3e+02 Score=23.51 Aligned_cols=18 Identities=22% Similarity=0.682 Sum_probs=15.4
Q ss_pred EEcCCHHHHHHHHHHHHH
Q psy2207 283 FGADNEQSYERWMKAMRE 300 (305)
Q Consensus 283 f~a~s~e~~~~Wi~al~~ 300 (305)
.++.+.+.+.+||..|++
T Consensus 94 tg~~~~~sL~~WI~~Lq~ 111 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQE 111 (126)
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 346899999999999986
No 342
>PF01907 Ribosomal_L37e: Ribosomal protein L37e; InterPro: IPR001569 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins of 56 to 96 amino-acid residues that share a highly conserved region located in the N-terminal part.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A19_A 4A1D_A 4A18_A 4A1B_A 1S1I_Y 3O5H_d 3IZS_l 3O58_d 2ZKR_2 3IZR_l ....
Probab=27.52 E-value=34 Score=22.45 Aligned_cols=8 Identities=50% Similarity=1.352 Sum_probs=4.3
Q ss_pred ccccccce
Q psy2207 102 HCRACGKV 109 (305)
Q Consensus 102 hCr~cg~v 109 (305)
.||.||..
T Consensus 17 ~CrRCG~~ 24 (55)
T PF01907_consen 17 LCRRCGRR 24 (55)
T ss_dssp E-TTTSSE
T ss_pred eecccCCe
Confidence 46666655
No 343
>PLN02400 cellulose synthase
Probab=27.40 E-value=42 Score=35.62 Aligned_cols=44 Identities=27% Similarity=0.503 Sum_probs=33.7
Q ss_pred eecCCCcccccccccccccc---cccccccccceeccCccCCeeccc
Q psy2207 79 IPDSRVSMCQRCTSVFTVTF---RRHHCRACGKVVCGPCSDYLAPLE 122 (305)
Q Consensus 79 ~~d~~~~~C~~C~~~f~~~~---rrhhCr~cg~v~C~~Cs~~~~~l~ 122 (305)
+.+-....|++|+..-++.. --..|..||.-||-.|-.|.+.-+
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeG 77 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDG 77 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccC
Confidence 45666779999998765432 237899999999999998876443
No 344
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.28 E-value=28 Score=19.78 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=10.1
Q ss_pred eccCccCCeecccCCCCccccccHhh
Q psy2207 110 VCGPCSDYLAPLEYKKFRNFRVCEEC 135 (305)
Q Consensus 110 ~C~~Cs~~~~~l~~~~~~~~rvC~~C 135 (305)
+|+.|-......+ ....|+|..|
T Consensus 5 fC~~CG~~t~~~~---~g~~r~C~~C 27 (32)
T PF09297_consen 5 FCGRCGAPTKPAP---GGWARRCPSC 27 (32)
T ss_dssp B-TTT--BEEE-S---SSS-EEESSS
T ss_pred ccCcCCccccCCC---CcCEeECCCC
Confidence 5566655544332 3566777666
No 345
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.99 E-value=29 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.673 Sum_probs=18.3
Q ss_pred ccccccccceeccCccCCeecccCCCCcccccc-HhhHHHHHhc
Q psy2207 100 RHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVC-EECYHYLVQE 142 (305)
Q Consensus 100 rhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC-~~C~~~~~~~ 142 (305)
..||..||.- +| ...+.| ..|-+.....
T Consensus 3 HkHC~~CG~~-----------Ip----~~~~fCS~~C~~~~~k~ 31 (59)
T PF09889_consen 3 HKHCPVCGKP-----------IP----PDESFCSPKCREEYRKR 31 (59)
T ss_pred CCcCCcCCCc-----------CC----cchhhhCHHHHHHHHHH
Confidence 3689888864 22 346778 5887776643
No 346
>PF15411 PH_10: Pleckstrin homology domain
Probab=26.79 E-value=59 Score=24.91 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCceEEEEEe----ceEEEEEeCCHHHHHHHHHHH
Q psy2207 11 YNNEFSVIAI----SRSFTLRARSANERLEWIDAI 41 (305)
Q Consensus 11 ~~~~f~i~~~----~ksf~~~a~s~~ek~~W~~~i 41 (305)
..+..+|.-. .-+|.|...+++.++.|-.+|
T Consensus 82 g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 82 GSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 3456666652 239999999999999998765
No 347
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=26.69 E-value=36 Score=25.97 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=22.3
Q ss_pred cccccccccccccccccccccceeccCccCC
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~ 117 (305)
|..|+.++. ..+.+|-+||-.|-+...-.
T Consensus 1 CPvCg~~l~--vt~l~C~~C~t~i~G~F~l~ 29 (113)
T PF09862_consen 1 CPVCGGELV--VTRLKCPSCGTEIEGEFELP 29 (113)
T ss_pred CCCCCCceE--EEEEEcCCCCCEEEeeeccc
Confidence 788998664 45788999999988876543
No 348
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=26.52 E-value=33 Score=27.23 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=18.7
Q ss_pred Cccccccccccccccc-----ccccccccce
Q psy2207 84 VSMCQRCTSVFTVTFR-----RHHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~r-----rhhCr~cg~v 109 (305)
--.|..|+.|-+.+.+ -.+|.+||..
T Consensus 102 yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T PRK03988 102 YVICPECGSPDTKLIKEGRIWVLKCEACGAE 132 (138)
T ss_pred cEECCCCCCCCcEEEEcCCeEEEEcccCCCC
Confidence 4579999999985433 2578888764
No 349
>KOG3521|consensus
Probab=26.49 E-value=64 Score=32.32 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.0
Q ss_pred ceeEEEEeC-----CceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207 268 KYVFQLKHQ-----GQDPLVFGADNEQSYERWMKAMREAT 302 (305)
Q Consensus 268 ~~~F~l~~~-----~~~~~~f~a~s~e~~~~Wi~al~~a~ 302 (305)
++.|-++|- ...-|.|.|...++..+|.++|+.|.
T Consensus 487 pnsf~lVhLtEFh~a~~ayt~hcs~p~d~~~W~D~l~~Aq 526 (846)
T KOG3521|consen 487 PNSFLLVHLTEFHTAQAAYTMHCSGPEDTLRWTDMLKMAQ 526 (846)
T ss_pred CCceEEEeechhhhhhhhheeecCChhhHHHHHHHHHHHH
Confidence 357777763 33459999999999999999999875
No 350
>PTZ00083 40S ribosomal protein S27; Provisional
Probab=26.33 E-value=40 Score=24.24 Aligned_cols=27 Identities=26% Similarity=0.712 Sum_probs=18.8
Q ss_pred ccccccc---cccccccccccccccceecc
Q psy2207 86 MCQRCTS---VFTVTFRRHHCRACGKVVCG 112 (305)
Q Consensus 86 ~C~~C~~---~f~~~~rrhhCr~cg~v~C~ 112 (305)
.|.+|.. -|+-......|..||.++|.
T Consensus 37 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 66 (85)
T PTZ00083 37 KCPGCSQITTVFSHAQTVVLCGGCSSQLCQ 66 (85)
T ss_pred ECCCCCCeeEEEecCceEEEccccCCEeec
Confidence 5888876 45445566778888888774
No 351
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=26.26 E-value=37 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=11.9
Q ss_pred ccccccccccc----ccccccccccc
Q psy2207 86 MCQRCTSVFTV----TFRRHHCRACG 107 (305)
Q Consensus 86 ~C~~C~~~f~~----~~rrhhCr~cg 107 (305)
.|..|+..... ...|+||..|=
T Consensus 6 ~C~~CG~~V~p~~~g~~~RNHCP~CL 31 (92)
T PF12647_consen 6 TCVHCGLTVSPLAAGSAHRNHCPSCL 31 (92)
T ss_pred CccccCCCcccCCCCCCccCcCcccc
Confidence 56667665532 23456665543
No 352
>smart00336 BBOX B-Box-type zinc finger.
Probab=26.25 E-value=51 Score=19.47 Aligned_cols=28 Identities=21% Similarity=0.731 Sum_probs=18.5
Q ss_pred ccccccc-ccccccccccccccccceeccCccCC
Q psy2207 85 SMCQRCT-SVFTVTFRRHHCRACGKVVCGPCSDY 117 (305)
Q Consensus 85 ~~C~~C~-~~f~~~~rrhhCr~cg~v~C~~Cs~~ 117 (305)
..|..+. .+. ...|..|..++|..|...
T Consensus 4 ~~C~~h~~~~~-----~~~C~~c~~~iC~~C~~~ 32 (42)
T smart00336 4 PKCDSHGDEPA-----EFFCEECGALLCRTCDEA 32 (42)
T ss_pred CcCCCCCCCce-----EEECCCCCcccccccChh
Confidence 3465555 322 245889999999988854
No 353
>PLN02195 cellulose synthase A
Probab=26.07 E-value=33 Score=35.93 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=37.1
Q ss_pred CCCcccccccccccccc---cccccccccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207 82 SRVSMCQRCTSVFTVTF---RRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV 140 (305)
Q Consensus 82 ~~~~~C~~C~~~f~~~~---rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~ 140 (305)
+....|..|+..-++.. .=..|..||.-||..|-.|.+.-+ ...|..|.....
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg------~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEG------RKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcC------CccCCccCCccc
Confidence 45668999988555432 227899999999999998865433 356666655544
No 354
>PHA02565 49 recombination endonuclease VII; Provisional
Probab=26.04 E-value=37 Score=27.38 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=13.7
Q ss_pred ccccccccccccc-cc--ccccc
Q psy2207 85 SMCQRCTSVFTVT-FR--RHHCR 104 (305)
Q Consensus 85 ~~C~~C~~~f~~~-~r--rhhCr 104 (305)
-.|+.|+.+|.-. .+ ..||+
T Consensus 21 G~CaiC~~~l~~~~~~~~vDHDH 43 (157)
T PHA02565 21 GICPLCKRELDGDVSKNHLDHDH 43 (157)
T ss_pred CcCCCCCCccCCCccccccCCCC
Confidence 4699999988632 22 46888
No 355
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=25.99 E-value=35 Score=20.25 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=14.4
Q ss_pred cccccccccc-ccccccccccccce
Q psy2207 86 MCQRCTSVFT-VTFRRHHCRACGKV 109 (305)
Q Consensus 86 ~C~~C~~~f~-~~~rrhhCr~cg~v 109 (305)
.|..|+..+. ...-..-|..||.+
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCceE
Confidence 4778877644 23445666666654
No 356
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=25.96 E-value=26 Score=20.84 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=18.5
Q ss_pred cccccccccccccccccccccceeccCccCCee
Q psy2207 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119 (305)
Q Consensus 87 C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~ 119 (305)
|..|...+.... .-..||..||..|.....
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~ 30 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWL 30 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHH
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHH
Confidence 455666554332 345788888888876543
No 357
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=25.79 E-value=27 Score=23.10 Aligned_cols=7 Identities=57% Similarity=1.635 Sum_probs=3.8
Q ss_pred cccccce
Q psy2207 103 CRACGKV 109 (305)
Q Consensus 103 Cr~cg~v 109 (305)
||.||+.
T Consensus 19 CRRCGr~ 25 (61)
T COG2126 19 CRRCGRR 25 (61)
T ss_pred hhhccch
Confidence 5555554
No 358
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=25.70 E-value=34 Score=25.99 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=18.2
Q ss_pred Cccccccccccccccc-----ccccccccc
Q psy2207 84 VSMCQRCTSVFTVTFR-----RHHCRACGK 108 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~r-----rhhCr~cg~ 108 (305)
--.|..|+.|-+.+.+ -.+|.+||.
T Consensus 80 yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 109 (110)
T smart00653 80 YVLCPECGSPDTELIKENRLFFLKCEACGA 109 (110)
T ss_pred cEECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence 3479999999985443 257888884
No 359
>PLN00209 ribosomal protein S27; Provisional
Probab=25.42 E-value=41 Score=24.20 Aligned_cols=27 Identities=33% Similarity=0.771 Sum_probs=18.8
Q ss_pred ccccccc---cccccccccccccccceecc
Q psy2207 86 MCQRCTS---VFTVTFRRHHCRACGKVVCG 112 (305)
Q Consensus 86 ~C~~C~~---~f~~~~rrhhCr~cg~v~C~ 112 (305)
.|.+|.. -|+-......|..||.++|.
T Consensus 38 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 67 (86)
T PLN00209 38 KCQGCFNITTVFSHSQTVVVCGSCQTVLCQ 67 (86)
T ss_pred ECCCCCCeeEEEecCceEEEccccCCEeec
Confidence 5888877 44445566778888888774
No 360
>KOG3362|consensus
Probab=25.31 E-value=26 Score=27.81 Aligned_cols=29 Identities=24% Similarity=0.642 Sum_probs=21.5
Q ss_pred CcccccccccccccccccccccccceeccC-ccCC
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGP-CSDY 117 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~-Cs~~ 117 (305)
.+.|+.||- ....-|-+||.-+|.- |...
T Consensus 118 r~fCaVCG~-----~S~ysC~~CG~kyCsv~C~~~ 147 (156)
T KOG3362|consen 118 RKFCAVCGY-----DSKYSCVNCGTKYCSVRCLKT 147 (156)
T ss_pred chhhhhcCC-----CchhHHHhcCCceeechhhhh
Confidence 568999992 3557899999998863 5543
No 361
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=25.25 E-value=26 Score=20.46 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=14.3
Q ss_pred cccccccceeccCccCC
Q psy2207 101 HHCRACGKVVCGPCSDY 117 (305)
Q Consensus 101 hhCr~cg~v~C~~Cs~~ 117 (305)
..|..|+..+|..|...
T Consensus 13 ~fC~~~~~~iC~~C~~~ 29 (39)
T cd00021 13 LFCETDRALLCVDCDLS 29 (39)
T ss_pred EEeCccChhhhhhcChh
Confidence 56999999999999743
No 362
>KOG4471|consensus
Probab=24.70 E-value=2e+02 Score=28.71 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=46.3
Q ss_pred EECCEEEEEccCccCccceEEEecCeEEE--Ecc-ccCCcceeEEEEeCCceeEEEEcCCHHHHH-HHHHHHHHHH
Q psy2207 231 LKDQVMYKYKASEDIKALLSIPVLGYELE--ALN-EQDNFKYVFQLKHQGQDPLVFGADNEQSYE-RWMKAMREAT 302 (305)
Q Consensus 231 L~~~~L~~y~~~~d~~p~~~i~L~~~~v~--~~~-~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~-~Wi~al~~a~ 302 (305)
|..-.||+-.-+.+..+...+||..+.-+ ..+ .....-|.++|..+..+...|.-.+++..+ .|.+.|.+++
T Consensus 61 lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~~~ 136 (717)
T KOG4471|consen 61 LSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERLNRAA 136 (717)
T ss_pred eeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEEeccccceeeecCcccccHHHHHHHHHHhc
Confidence 44455555445555566677777433222 111 112223677777788888999999988888 9999998765
No 363
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.65 E-value=42 Score=24.97 Aligned_cols=32 Identities=22% Similarity=0.670 Sum_probs=19.1
Q ss_pred CcccccccccccccccccccccccceeccCccCCe
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~ 118 (305)
.-.|..|+. ..+...+++ +=+.++|..|--++
T Consensus 21 ~f~CP~Cge-~~v~v~~~k--~~~h~~C~~CG~y~ 52 (99)
T PRK14892 21 IFECPRCGK-VSISVKIKK--NIAIITCGNCGLYT 52 (99)
T ss_pred EeECCCCCC-eEeeeecCC--CcceEECCCCCCcc
Confidence 346888884 344333333 45677888887664
No 364
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=24.57 E-value=45 Score=18.86 Aligned_cols=22 Identities=27% Similarity=0.863 Sum_probs=13.6
Q ss_pred ccccccccccccccccccccccceecc
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKVVCG 112 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v~C~ 112 (305)
.|..|+. ..++-|..||..+|+
T Consensus 4 ~C~vC~~-----~~kY~Cp~C~~~~CS 25 (30)
T PF04438_consen 4 LCSVCGN-----PAKYRCPRCGARYCS 25 (30)
T ss_dssp EETSSSS-----EESEE-TTT--EESS
T ss_pred CCccCcC-----CCEEECCCcCCceeC
Confidence 5777776 345778999988885
No 365
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=24.33 E-value=69 Score=22.40 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.4
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHHHcCC
Q psy2207 276 QGQDPLVFGADNEQSYERWMKAMREATTLS 305 (305)
Q Consensus 276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~~~s 305 (305)
.++..+.+.++++...+.+++.|+.|..+|
T Consensus 46 ~Gd~l~~i~~~~~~~~~~a~~~~~~a~~Is 75 (75)
T PF07831_consen 46 KGDPLATIYANDEARLEEAVERLRAAITIS 75 (75)
T ss_dssp TTSEEEEEEESSSSHHHHHHHHHHHHEEEE
T ss_pred CCCeEEEEEcCChHHHHHHHHHHHhCcccC
Confidence 456678888999999999999999997765
No 366
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.16 E-value=82 Score=17.90 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy2207 35 LEWIDAIQTAIKE 47 (305)
Q Consensus 35 ~~W~~~i~~ai~~ 47 (305)
.+|++.|++|+..
T Consensus 3 ~EW~~Li~eA~~~ 15 (30)
T PF08671_consen 3 EEWVELIKEAKES 15 (30)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 5899999999764
No 367
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.06 E-value=49 Score=18.99 Aligned_cols=7 Identities=43% Similarity=1.417 Sum_probs=3.0
Q ss_pred cccccce
Q psy2207 103 CRACGKV 109 (305)
Q Consensus 103 Cr~cg~v 109 (305)
|..||.+
T Consensus 4 C~~CGy~ 10 (33)
T cd00350 4 CPVCGYI 10 (33)
T ss_pred CCCCCCE
Confidence 4444443
No 368
>PLN02436 cellulose synthase A
Probab=24.05 E-value=45 Score=35.36 Aligned_cols=43 Identities=26% Similarity=0.559 Sum_probs=32.5
Q ss_pred eecCCCcccccccccccccc---cccccccccceeccCccCCeecc
Q psy2207 79 IPDSRVSMCQRCTSVFTVTF---RRHHCRACGKVVCGPCSDYLAPL 121 (305)
Q Consensus 79 ~~d~~~~~C~~C~~~f~~~~---rrhhCr~cg~v~C~~Cs~~~~~l 121 (305)
+.......|++|+..-++.. --..|.-||.-||..|-.+.+.-
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~e 76 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERRE 76 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc
Confidence 45556779999998765432 23789999999999999886543
No 369
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.91 E-value=56 Score=31.88 Aligned_cols=33 Identities=24% Similarity=0.606 Sum_probs=17.2
Q ss_pred ccccccccccc--cccccccccccce-----eccCccCCe
Q psy2207 86 MCQRCTSVFTV--TFRRHHCRACGKV-----VCGPCSDYL 118 (305)
Q Consensus 86 ~C~~C~~~f~~--~~rrhhCr~cg~v-----~C~~Cs~~~ 118 (305)
.|..|..+.+. -..+-.|+.||.. .|..|.+..
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSED 263 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCe
Confidence 45555554442 2234556666665 566666543
No 370
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.87 E-value=33 Score=35.04 Aligned_cols=16 Identities=38% Similarity=1.032 Sum_probs=9.4
Q ss_pred ccccccce-eccCccCC
Q psy2207 102 HCRACGKV-VCGPCSDY 117 (305)
Q Consensus 102 hCr~cg~v-~C~~Cs~~ 117 (305)
.|+.||.+ -|.+|+..
T Consensus 437 ~C~~Cg~v~~Cp~Cd~~ 453 (730)
T COG1198 437 LCRDCGYIAECPNCDSP 453 (730)
T ss_pred ecccCCCcccCCCCCcc
Confidence 46666666 36666643
No 371
>PF14353 CpXC: CpXC protein
Probab=23.82 E-value=42 Score=25.90 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=7.7
Q ss_pred cccccccccc
Q psy2207 86 MCQRCTSVFT 95 (305)
Q Consensus 86 ~C~~C~~~f~ 95 (305)
.|..|+.+|.
T Consensus 3 tCP~C~~~~~ 12 (128)
T PF14353_consen 3 TCPHCGHEFE 12 (128)
T ss_pred CCCCCCCeeE
Confidence 5888888775
No 372
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=23.71 E-value=30 Score=32.74 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=21.9
Q ss_pred Ccccccccccccccccccccccccce
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg~v 109 (305)
...|..|+..|......++|..||-.
T Consensus 5 ~~rc~~cg~~f~~a~~~~~c~~cGl~ 30 (411)
T COG0498 5 SLRCLKCGREFSQALLQGLCPDCGLF 30 (411)
T ss_pred EeecCCCCcchhhHHhhCcCCcCCcc
Confidence 45799999999977778999998875
No 373
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=23.69 E-value=49 Score=18.79 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=8.3
Q ss_pred cccccccccccccccccccccccceeccCcc
Q psy2207 85 SMCQRCTSVFTVTFRRHHCRACGKVVCGPCS 115 (305)
Q Consensus 85 ~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs 115 (305)
+.|..|+..++.. .-...||..|.
T Consensus 3 p~Cp~C~se~~y~-------D~~~~vCp~C~ 26 (30)
T PF08274_consen 3 PKCPLCGSEYTYE-------DGELLVCPECG 26 (30)
T ss_dssp ---TTT-----EE--------SSSEEETTTT
T ss_pred CCCCCCCCcceec-------cCCEEeCCccc
Confidence 3577777777752 22345565554
No 374
>KOG1313|consensus
Probab=23.67 E-value=25 Score=31.19 Aligned_cols=34 Identities=32% Similarity=0.675 Sum_probs=23.7
Q ss_pred CCcccccccccccccccccccccccceec---------cCccCCe
Q psy2207 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVC---------GPCSDYL 118 (305)
Q Consensus 83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C---------~~Cs~~~ 118 (305)
..+.|-.|..+= --|-|||+.|++.|= ++|.|.+
T Consensus 101 ~~SfC~KC~~pK--~prTHHCsiC~kCVL~MDHHCPwinnCVG~~ 143 (309)
T KOG1313|consen 101 NDSFCNKCNYPK--SPRTHHCSICNKCVLKMDHHCPWINNCVGAH 143 (309)
T ss_pred cccHHhhcCCCC--CCCcchhhHHhhHhhccccCCchhhcccccc
Confidence 356788887733 235599999999853 4777764
No 375
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=23.67 E-value=36 Score=26.08 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=15.3
Q ss_pred Cccccccccccccccccccccccc
Q psy2207 84 VSMCQRCTSVFTVTFRRHHCRACG 107 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~rrhhCr~cg 107 (305)
.-.|..|+..|..-.-.+.|..||
T Consensus 70 ~~~C~~C~~~~~~e~~~~~CP~C~ 93 (115)
T COG0375 70 ECWCLDCGQEVELEELDYRCPKCG 93 (115)
T ss_pred EEEeccCCCeecchhheeECCCCC
Confidence 346889988887654444455554
No 376
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.50 E-value=49 Score=33.55 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=5.1
Q ss_pred cccHhhHHH
Q psy2207 130 RVCEECYHY 138 (305)
Q Consensus 130 rvC~~C~~~ 138 (305)
..|..|...
T Consensus 423 ~~Cp~Cgs~ 431 (665)
T PRK14873 423 WRCPRCGSD 431 (665)
T ss_pred ccCCCCcCC
Confidence 456666543
No 377
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=23.17 E-value=39 Score=21.46 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=12.9
Q ss_pred ccccccc-cccccccccccccccc
Q psy2207 86 MCQRCTS-VFTVTFRRHHCRACGK 108 (305)
Q Consensus 86 ~C~~C~~-~f~~~~rrhhCr~cg~ 108 (305)
.|..|.+ ++. ..|.+|..|..
T Consensus 2 ~C~~C~~~~i~--g~R~~C~~C~d 23 (49)
T cd02345 2 SCSACRKQDIS--GIRFPCQVCRD 23 (49)
T ss_pred cCCCCCCCCce--EeeEECCCCCC
Confidence 4777777 444 45667766543
No 378
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.85 E-value=59 Score=17.47 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=4.9
Q ss_pred cccccccc
Q psy2207 101 HHCRACGK 108 (305)
Q Consensus 101 hhCr~cg~ 108 (305)
..|.+||.
T Consensus 17 f~CPnCG~ 24 (24)
T PF07754_consen 17 FPCPNCGF 24 (24)
T ss_pred EeCCCCCC
Confidence 55666663
No 379
>KOG3518|consensus
Probab=22.77 E-value=76 Score=29.03 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.1
Q ss_pred ceeEEEEeC--CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207 268 KYVFQLKHQ--GQDPLVFGADNEQSYERWMKAMREA 301 (305)
Q Consensus 268 ~~~F~l~~~--~~~~~~f~a~s~e~~~~Wi~al~~a 301 (305)
+..|++.+- ....|.|.|.+.++.+-||..|+..
T Consensus 396 plsfqv~~fdnpkaq~~fma~sme~kr~wm~elkrl 431 (521)
T KOG3518|consen 396 PLSFQVFHFDNPKAQHTFMAKSMEDKRLWMLELKRL 431 (521)
T ss_pred CceeEEEecCCcchhhhhhhhhhHHHHHHHHHHHHH
Confidence 468888872 2336899999999999999999753
No 380
>KOG3523|consensus
Probab=22.72 E-value=92 Score=30.88 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCCceEEEEE------eceEEEEEeCCHHHHHHHHHHHH
Q psy2207 10 DYNNEFSVIA------ISRSFTLRARSANERLEWIDAIQ 42 (305)
Q Consensus 10 ~~~~~f~i~~------~~ksf~~~a~s~~ek~~W~~~i~ 42 (305)
..+|-|.+.- .+-.|.|.|+|+.||.-||.++.
T Consensus 553 ~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 553 SRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred cccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 3456787653 44589999999999999999774
No 381
>KOG1829|consensus
Probab=22.69 E-value=58 Score=32.22 Aligned_cols=65 Identities=18% Similarity=0.348 Sum_probs=47.8
Q ss_pred CCCccccccccccc--ccccccccccccceeccCccCCeecc-cC-----CCCccccccHhhHHHHHhccCCC
Q psy2207 82 SRVSMCQRCTSVFT--VTFRRHHCRACGKVVCGPCSDYLAPL-EY-----KKFRNFRVCEECYHYLVQEFDDE 146 (305)
Q Consensus 82 ~~~~~C~~C~~~f~--~~~rrhhCr~cg~v~C~~Cs~~~~~l-~~-----~~~~~~rvC~~C~~~~~~~~~~~ 146 (305)
...-.|+.|+.++. .+.+--.|+-+|.-+|..|-.+-..+ |. .......||+.-..-+......+
T Consensus 338 aQ~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~~WDf~~y~Vs~~a~~~L~~ir~~P 410 (580)
T KOG1829|consen 338 AQNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLHNWDFTKYPVSNFAKQFLDEIREQP 410 (580)
T ss_pred ccCceecccCCCcccccccchhHhhhhhhhhCchhcccCcccccccceecccCcccccchhHHHHHHHHhccc
Confidence 34457999999998 45666789999999999999775333 42 24567788887777776655555
No 382
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=22.47 E-value=62 Score=21.58 Aligned_cols=32 Identities=22% Similarity=0.553 Sum_probs=21.0
Q ss_pred Cccccccccccccc--ccccccccccceeccCcc
Q psy2207 84 VSMCQRCTSVFTVT--FRRHHCRACGKVVCGPCS 115 (305)
Q Consensus 84 ~~~C~~C~~~f~~~--~rrhhCr~cg~v~C~~Cs 115 (305)
...|..|+...... .-+..|.+||.++=.+|.
T Consensus 7 ~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~ 40 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCE 40 (59)
T ss_pred CccccCCCCcccCCCccCEeeCCCCCCeeEeech
Confidence 34688888766533 346789999988544444
No 383
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.29 E-value=63 Score=32.59 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=32.4
Q ss_pred ccccccccccccccccccccccce----eccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKV----VCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v----~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
.|..|+....- .-..|..||.- .|..|-.. .....+.|..|-..+..
T Consensus 3 ~Cp~Cg~~n~~--~akFC~~CG~~l~~~~Cp~CG~~-------~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 3 ICPQCQFENPN--NNRFCQKCGTSLTHKPCPQCGTE-------VPVDEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCcCCC--CCccccccCCCCCCCcCCCCCCC-------CCcccccccccCCcccc
Confidence 68899886432 22468888876 57777654 34567889999776654
No 384
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=22.20 E-value=59 Score=25.88 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=8.7
Q ss_pred CCCccccccccccc
Q psy2207 82 SRVSMCQRCTSVFT 95 (305)
Q Consensus 82 ~~~~~C~~C~~~f~ 95 (305)
...+.|..|..++-
T Consensus 89 ~~~sRC~~CN~~L~ 102 (147)
T PF01927_consen 89 PIFSRCPKCNGPLR 102 (147)
T ss_pred CCCCccCCCCcEee
Confidence 33567777776553
No 385
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.12 E-value=34 Score=18.00 Aligned_cols=6 Identities=33% Similarity=1.281 Sum_probs=3.0
Q ss_pred cccccc
Q psy2207 87 CQRCTS 92 (305)
Q Consensus 87 C~~C~~ 92 (305)
|..|+.
T Consensus 2 Cp~CG~ 7 (23)
T PF13240_consen 2 CPNCGA 7 (23)
T ss_pred CcccCC
Confidence 445555
No 386
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=22.01 E-value=37 Score=20.76 Aligned_cols=28 Identities=29% Similarity=0.826 Sum_probs=17.3
Q ss_pred ccccccccccccccccccccccce-eccCccC
Q psy2207 86 MCQRCTSVFTVTFRRHHCRACGKV-VCGPCSD 116 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~cg~v-~C~~Cs~ 116 (305)
.|..|.. +...|+||..|.-. .|..|-.
T Consensus 2 ~C~~C~~---~~~~r~~C~~C~dfDLC~~C~~ 30 (41)
T cd02337 2 TCNECKH---HVETRWHCTVCEDYDLCITCYN 30 (41)
T ss_pred cCCCCCC---cCCCceECCCCcchhhHHHHhC
Confidence 4777766 23478888877533 5555554
No 387
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=21.91 E-value=63 Score=20.04 Aligned_cols=24 Identities=33% Similarity=0.837 Sum_probs=15.4
Q ss_pred ccccccccc--ccccc-cccccccccc
Q psy2207 85 SMCQRCTSV--FTVTF-RRHHCRACGK 108 (305)
Q Consensus 85 ~~C~~C~~~--f~~~~-rrhhCr~cg~ 108 (305)
..|..|+.. +.+.. .++.|+.|+.
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCCC
Confidence 469999873 22333 5678888764
No 388
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=21.72 E-value=1.9e+02 Score=19.33 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=24.0
Q ss_pred cCCCceEEEEEeceEEEE--EeCCHHHHHHHHH
Q psy2207 9 EDYNNEFSVIAISRSFTL--RARSANERLEWID 39 (305)
Q Consensus 9 ~~~~~~f~i~~~~ksf~~--~a~s~~ek~~W~~ 39 (305)
.+.++--.|.+...+|++ +|+|.+|-.+|-+
T Consensus 12 ~~kkf~~tveg~~~sfEVPV~A~SLeeA~e~AE 44 (63)
T PHA00457 12 GEKKFIATVEGSGQSFEVPVYAKSLEEATELAE 44 (63)
T ss_pred cceEEEEEEeccCceEEeeeecccHHHHHHHHH
Confidence 444556667788889985 8999999988865
No 389
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=21.40 E-value=41 Score=25.06 Aligned_cols=10 Identities=50% Similarity=1.205 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy2207 86 MCQRCTSVFT 95 (305)
Q Consensus 86 ~C~~C~~~f~ 95 (305)
.|..|+.-|.
T Consensus 4 ~CtrCG~vf~ 13 (112)
T COG3364 4 QCTRCGEVFD 13 (112)
T ss_pred eecccccccc
Confidence 4555555554
No 390
>KOG1818|consensus
Probab=21.36 E-value=24 Score=35.07 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=28.8
Q ss_pred ccccccccccccccccccccccc-ceeccCccCCe
Q psy2207 85 SMCQRCTSVFTVTFRRHHCRACG-KVVCGPCSDYL 118 (305)
Q Consensus 85 ~~C~~C~~~f~~~~rrhhCr~cg-~v~C~~Cs~~~ 118 (305)
.+|..|.+.|++..+.|+|++|| .|+|.-|+...
T Consensus 55 ~h~np~~~~~~~~~~d~cvkn~G~gv~~ei~tre~ 89 (634)
T KOG1818|consen 55 DHENPNVQLFTLKLTDHCVKNCGHGVHCEIATREF 89 (634)
T ss_pred hccCCCcccchhhhHHHHHhcCCcchhHHHHHHHH
Confidence 37888999999999999999999 78787776553
No 391
>PHA02942 putative transposase; Provisional
Probab=21.19 E-value=66 Score=30.19 Aligned_cols=27 Identities=26% Similarity=0.725 Sum_probs=18.1
Q ss_pred CCccccccccccc-ccccccccccccce
Q psy2207 83 RVSMCQRCTSVFT-VTFRRHHCRACGKV 109 (305)
Q Consensus 83 ~~~~C~~C~~~f~-~~~rrhhCr~cg~v 109 (305)
.+..|..|+..-. +-.|.+.|..||..
T Consensus 324 TSq~Cs~CG~~~~~l~~r~f~C~~CG~~ 351 (383)
T PHA02942 324 SSVSCPKCGHKMVEIAHRYFHCPSCGYE 351 (383)
T ss_pred CCccCCCCCCccCcCCCCEEECCCCCCE
Confidence 4567888887433 23466788888876
No 392
>KOG0823|consensus
Probab=21.16 E-value=17 Score=31.28 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=32.1
Q ss_pred cCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ 141 (305)
Q Consensus 81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~ 141 (305)
|+..=.|-+|-..- +.--=-.||.++|+-|.-+.... ......|..|...+..
T Consensus 44 ~~~~FdCNICLd~a----kdPVvTlCGHLFCWpClyqWl~~----~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA----KDPVVTLCGHLFCWPCLYQWLQT----RPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeecccc----CCCEEeecccceehHHHHHHHhh----cCCCeeCCcccccccc
Confidence 44455677775522 11122369999999999776533 2334566777666653
No 393
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=20.98 E-value=47 Score=28.12 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=17.8
Q ss_pred Cccccccccccccccc-----ccccccccce
Q psy2207 84 VSMCQRCTSVFTVTFR-----RHHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~~f~~~~r-----rhhCr~cg~v 109 (305)
--.|..|+.|-+.+.+ -.+|.+||..
T Consensus 98 yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~ 128 (201)
T PRK12336 98 YVICSECGLPDTRLVKEDRVLMLRCDACGAH 128 (201)
T ss_pred eEECCCCCCCCcEEEEcCCeEEEEcccCCCC
Confidence 4479999999985433 2367777654
No 394
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.65 E-value=50 Score=20.37 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.8
Q ss_pred Ccccccccccccc
Q psy2207 84 VSMCQRCTSVFTV 96 (305)
Q Consensus 84 ~~~C~~C~~~f~~ 96 (305)
...|..|+.+|+-
T Consensus 8 ~K~C~~C~rpf~W 20 (42)
T PF10013_consen 8 SKICPVCGRPFTW 20 (42)
T ss_pred CCcCcccCCcchH
Confidence 4579999999984
No 395
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=20.46 E-value=21 Score=21.70 Aligned_cols=17 Identities=41% Similarity=1.058 Sum_probs=6.7
Q ss_pred ccccccccce----eccCccC
Q psy2207 100 RHHCRACGKV----VCGPCSD 116 (305)
Q Consensus 100 rhhCr~cg~v----~C~~Cs~ 116 (305)
.++|..||.+ +|.=|+.
T Consensus 17 i~~C~~C~nlse~~~C~IC~d 37 (41)
T PF02132_consen 17 IKFCSICGNLSEEDPCEICSD 37 (41)
T ss_dssp -EE-SSS--EESSSS-HHHH-
T ss_pred CCccCCCCCcCCCCcCcCCCC
Confidence 3677777766 4544543
No 396
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=20.40 E-value=52 Score=20.81 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=17.7
Q ss_pred ccccccccccccccccccccc-cceeccCccC
Q psy2207 86 MCQRCTSVFTVTFRRHHCRAC-GKVVCGPCSD 116 (305)
Q Consensus 86 ~C~~C~~~f~~~~rrhhCr~c-g~v~C~~Cs~ 116 (305)
.|..|..... ...|.+|..| ..-+|..|-.
T Consensus 2 ~Cd~C~~~~~-~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT-GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC-CCcEEECCCCCCcchhHHhhh
Confidence 4777877543 2266778776 3345555544
No 397
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=20.23 E-value=22 Score=19.08 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=9.1
Q ss_pred cccccccccccc
Q psy2207 86 MCQRCTSVFTVT 97 (305)
Q Consensus 86 ~C~~C~~~f~~~ 97 (305)
.|..|+..|...
T Consensus 4 ~C~~CgR~F~~~ 15 (25)
T PF13913_consen 4 PCPICGRKFNPD 15 (25)
T ss_pred cCCCCCCEECHH
Confidence 588888888643
No 398
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=20.20 E-value=27 Score=22.23 Aligned_cols=21 Identities=33% Similarity=0.914 Sum_probs=11.9
Q ss_pred ccccccccccccccccccccccc
Q psy2207 85 SMCQRCTSVFTVTFRRHHCRACG 107 (305)
Q Consensus 85 ~~C~~C~~~f~~~~rrhhCr~cg 107 (305)
..|+.|...-+.. --.||.||
T Consensus 15 kIC~rC~Arnp~~--A~kCRkC~ 35 (50)
T COG1552 15 KICRRCYARNPPR--ATKCRKCG 35 (50)
T ss_pred HHHHHhcCCCCcc--hhHHhhcc
Confidence 3688888755432 23466554
No 399
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=20.06 E-value=33 Score=31.21 Aligned_cols=26 Identities=27% Similarity=0.787 Sum_probs=19.6
Q ss_pred Cccccccccccccc---ccccccccccce
Q psy2207 84 VSMCQRCTSVFTVT---FRRHHCRACGKV 109 (305)
Q Consensus 84 ~~~C~~C~~~f~~~---~rrhhCr~cg~v 109 (305)
-+.|..|.+.|++. .-++.|..||..
T Consensus 246 ~TAC~rC~t~y~le~A~~~~wrCpkCGg~ 274 (403)
T COG1379 246 LTACSRCYTRYSLEEAKSLRWRCPKCGGK 274 (403)
T ss_pred HHHHHHhhhccCcchhhhhcccCcccccc
Confidence 56799999988853 446888888764
Done!