RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2207
(305 letters)
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 135 bits (342), Expect = 5e-37
Identities = 47/142 (33%), Positives = 66/142 (46%)
Query: 1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
MKV P E + L A S ER EW + A+ E+ + S
Sbjct: 292 MKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHS 351
Query: 61 LTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAP 120
+ ++LG+ P +P + V MC C F++T RRHHC ACGK+VC CS P
Sbjct: 352 VEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYP 411
Query: 121 LEYKKFRNFRVCEECYHYLVQE 142
L+Y K R +VC+ C+ L +
Sbjct: 412 LKYLKDRMAKVCDGCFGELKKR 433
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 117 bits (294), Expect = 3e-33
Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 205 ANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
+ SGS SG+L++ G WK WFV+K++V+Y Y ASED+ AL S P+LG+ + +
Sbjct: 3 SGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVK 62
Query: 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
++++ VFQL H+G VF AD+ S +RW+ A +E T
Sbjct: 63 DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV 103
Score = 31.6 bits (72), Expect = 0.080
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 22 RSFTLRARSANERLEWIDAIQTAI 45
+ +A A+ WIDA Q
Sbjct: 79 VFYVFKADDAHSTQRWIDAFQEGT 102
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics
consortium, SGC, lipid BIND protein, transport protein;
1.09A {Homo sapiens}
Length = 90
Score = 109 bits (274), Expect = 2e-30
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 65 SIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK 124
S+ L LG+ P W+PDS C C FT T RRHHCRACGKV CG C + L+Y
Sbjct: 1 SMEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL 60
Query: 125 KFRNFRVCEECYHYLVQEFDDEDS 148
+ + RVC CY + + E
Sbjct: 61 E-KEARVCVVCYETISKAQAFERM 83
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics,
structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB:
2yqm_A
Length = 82
Score = 104 bits (261), Expect = 1e-28
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 66 IPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK 125
I E+N W+ D + C++C F+++ R+HHCR CG + C CS L
Sbjct: 1 IKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYP 60
Query: 126 FRNFRVCEECYHYLVQEFDDEDS 148
+ RVC+ C+ L+Q S
Sbjct: 61 -KPVRVCDSCHTLLLQRCSSTAS 82
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania
major}
Length = 84
Score = 100 bits (252), Expect = 2e-27
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRV 131
+ W D C C VFT T RRHHCR CG V+CG CS + A + + RV
Sbjct: 10 QSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERV 69
Query: 132 CEECYHYL 139
C+ CY L
Sbjct: 70 CDACYLAL 77
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 100 bits (249), Expect = 2e-26
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 27 RARSANERLE-WIDAIQTAIKENEQ---HLLSFLNRRSLTQSSIPELNLGKVAPLWIPDS 82
+ E I+ +QT + E ++ + + + S+ + + W D+
Sbjct: 8 ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDN 67
Query: 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYL 139
V C C F+VT RRHHCR CG + C CS A K + RVC+ C++ L
Sbjct: 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK-KPVRVCDACFNDL 123
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 99.3 bits (247), Expect = 2e-26
Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 204 TANDSGSQHSGWLHK-KSGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELE 259
++ SGS G L +SG W W + QV++ S+D + +IP+ +L
Sbjct: 2 SSGSSGSLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLS 61
Query: 260 ALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
+ ++ +V++L + A + + ++W++ + A
Sbjct: 62 VPDPEERLDSGHVWKL-QWAKQSWYLSASSAELQQQWLETLSTAAH 106
Score = 27.6 bits (61), Expect = 1.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIK 46
+S+ L A SA + +W++ + TA
Sbjct: 81 KQSWYLSASSAELQQQWLETLSTAAH 106
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 99.4 bits (248), Expect = 3e-26
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 204 TANDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA 260
++ ++ +GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A
Sbjct: 5 SSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAA 64
Query: 261 LNEQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
+ D + K+ F+ +H G F A++ + E W++AM EA
Sbjct: 65 VQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
Score = 36.2 bits (84), Expect = 0.003
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIK 46
R++ A S E+ WI A+ A +
Sbjct: 85 RTYFFSAESPEEQEAWIQAMGEAAR 109
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Mus musculus} SCOP:
g.50.1.1
Length = 88
Score = 97.2 bits (242), Expect = 9e-26
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 78 WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYH 137
S C C FT+ + + C+ CG+ C C + A + +VC++C+
Sbjct: 3 SGSSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHT 62
Query: 138 YLVQEFDDEDSNM 150
L + D S
Sbjct: 63 ILTRGSSDNASKW 75
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 96.5 bits (240), Expect = 3e-25
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 204 TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIK-ALLSIPVLGYELEALN 262
++ SG + S +L+ WK W ++D ++ Y+ K A + ++G E+
Sbjct: 2 SSGSSGLETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDP 61
Query: 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
D+ Y F++ H+G++ A + + W+ + +
Sbjct: 62 SPDH-LYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100
Score = 30.6 bits (69), Expect = 0.22
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAI 45
L A+S+ E W+ + +
Sbjct: 76 EELAKLEAKSSEEMGHWLGLLLSES 100
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 96.7 bits (241), Expect = 3e-25
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 206 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
++ +GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A+
Sbjct: 18 PNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQ 77
Query: 263 EQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304
D + K+ F+ +H G F A++ + E W++AM EA +
Sbjct: 78 PSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121
Score = 35.9 bits (83), Expect = 0.003
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIK 46
R++ A S E+ WI A+ A +
Sbjct: 96 RTYFFSAESPEEQEAWIQAMGEAAR 120
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide
binding, zinc binding, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 84
Score = 94.2 bits (234), Expect = 1e-24
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 75 APLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNF----- 129
+ P + C C++ F+V +R C CG C C + P
Sbjct: 5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRE 64
Query: 130 --RVCEECYHYLVQE 142
VC C L +
Sbjct: 65 TVFVCASCNQTLSKS 79
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 94.5 bits (235), Expect = 2e-24
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 181 GTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGR---NWKRYWFVLKDQVMY 237
G++G+R S K ++ GWL+K+ WK+ WFVL D ++
Sbjct: 4 GSSGKRSNSIKRNP------------NAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLF 51
Query: 238 KYKASEDIKALLSIPVLGYELEALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWM 295
Y+ ++ L SI + +++ L +D+ KY F+ H F D + E WM
Sbjct: 52 YYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWM 111
Query: 296 KAMREATTL 304
KAM +A +
Sbjct: 112 KAMLDAALV 120
Score = 34.4 bits (79), Expect = 0.012
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 2 KVCLPQTEDY---NNEFSVI-AISRSFTLRARSANERLEWIDAIQTAIK 46
++ L +ED+ F R++ + E W+ A+ A
Sbjct: 71 QIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL 119
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 89.0 bits (221), Expect = 7e-23
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRV 131
K WI C C+ F++ R+HHCR+CG V C S PL RV
Sbjct: 3 KTPADWIDSDA---CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRV 59
Query: 132 CEECYHYL 139
C+ C+
Sbjct: 60 CDSCFEDY 67
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 89.8 bits (223), Expect = 9e-23
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 213 SGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDN 266
G LH K+G +WK + VL + ++Y+Y D+ LLS+ + G + +
Sbjct: 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANT 62
Query: 267 F--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
+ FQ+ + L A++E WM+ + +A +
Sbjct: 63 TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101
Score = 33.2 bits (76), Expect = 0.024
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAI 45
L A S E EW+ + A+
Sbjct: 76 RPCLELSAESEAEMAEWMQHLCQAV 100
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 89.8 bits (223), Expect = 1e-22
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 207 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE 263
+ GWLHK+ R WKR WFVL ++ YK S + L S+ + Y +
Sbjct: 8 NLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGP 67
Query: 264 QD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
++ F +H G V AD + W++A+ A+
Sbjct: 68 GAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 109
Score = 35.1 bits (81), Expect = 0.007
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKENEQHL 52
R++ L A + + W+ A+ A +
Sbjct: 84 MRTYVLAADTLEDLRGWLRALGRASRAEGDDY 115
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 84.3 bits (209), Expect = 1e-20
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 268
G+L KK WK W VL + + YK D IP+ G L +
Sbjct: 7 REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
+VF++ Q F A + + W++ + +A
Sbjct: 67 FVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIK 101
Score = 35.8 bits (83), Expect = 0.004
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 6 PQTEDYNNEFSVI-AISRSFTLRARSANERLEWIDAIQTAIKENE 49
F + + +A ER W+ I AIK E
Sbjct: 60 QDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIE 104
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 84.0 bits (208), Expect = 1e-20
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 212 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 265
G+L KKS W++ W V+ + Y Y + + + + GY +
Sbjct: 5 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 64
Query: 266 ---NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ F+L Q + F A + W+ +
Sbjct: 65 RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103
Score = 36.3 bits (84), Expect = 0.002
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKE 47
R++ A S E +W+D I +K+
Sbjct: 80 RRTYEFTATSPAEARDWVDQISFLLKD 106
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 84.6 bits (209), Expect = 2e-20
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 212 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 265
+G+L K+ W++ W L V Y Y + +D + + GY++ N
Sbjct: 19 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 78
Query: 266 NF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
F++ + F A + + E W++ ++
Sbjct: 79 KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 117
Score = 36.1 bits (83), Expect = 0.005
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKENEQHLLS 54
R + A S + EW+ ++ +++ ++
Sbjct: 94 KRIYQFTAASPKDAEEWVQQLKFILQDLGSDVIP 127
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 88.0 bits (218), Expect = 8e-20
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 6 PQTEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQ 63
+ +++ F +I + + L ++ + +W++ + AI +
Sbjct: 293 RDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYP-------ENATAN 345
Query: 64 SSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTF-RRHHCRACGKVVCGPCSDYLAPL 121
+ + C+ C + TF + + C C C + P
Sbjct: 346 GHDFQ---------MFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPC 395
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 84.4 bits (208), Expect = 1e-19
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 10/133 (7%)
Query: 179 EMGTAGRRKPSKKYRKYVPQRLIEVTANDSGS-QHSGWLHKKSG------RNWKRYWFVL 231
+ A R + + A D +G+L K+ W++ W L
Sbjct: 74 TISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCAL 133
Query: 232 KDQVMYKYKASEDIKALLSIPVLGYELEALNEQD---NFKYVFQLKHQGQDPLVFGADNE 288
V Y Y + +D + + GY++ N F++ + F A +
Sbjct: 134 SKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASP 193
Query: 289 QSYERWMKAMREA 301
+ E W++ ++
Sbjct: 194 KDAEEWVQQLKFI 206
Score = 37.4 bits (86), Expect = 0.003
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKE 47
R + A S + EW+ ++ +++
Sbjct: 183 KRIYQFTAASPKDAEEWVQQLKFILQD 209
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 80.2 bits (198), Expect = 5e-19
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNF 267
GWL K+ +NW++ +FVL+ Q +Y YK ED K + + G ++ + N ++
Sbjct: 10 KMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG 69
Query: 268 KYVFQLKHQGQDPL-------VFGADNEQSYERWMKAMREAT 302
K+VF++ D V A ++ E W+K +R
Sbjct: 70 KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111
Score = 35.9 bits (83), Expect = 0.003
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIKEN 48
S+ L A S E EW+ ++
Sbjct: 88 DSYVLMASSQAEMEEWVKFLRRVAGSG 114
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 77.9 bits (192), Expect = 4e-18
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
G L K+ +NWK F+L++ ++ Y + L +I + G + ++ N
Sbjct: 20 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79
Query: 268 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ +F++ + A + W+KA++ A
Sbjct: 80 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118
Score = 37.4 bits (87), Expect = 0.001
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 10 DYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIKENEQH 51
+ N F +I + L+A + ER EWI AIQ A + +
Sbjct: 83 EEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRTGKSG 125
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 76.1 bits (187), Expect = 2e-17
Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELEALNE--- 263
G+L K+ +NWK FVL+ + Y + E+ + + + G + AL +
Sbjct: 20 KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 79
Query: 264 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
+ +F++ + A ++ W++A+++ T+
Sbjct: 80 PTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124
Score = 38.0 bits (88), Expect = 7e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 PQTEDYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIK 46
+ N F VI + ++A S ER EWI+AI+
Sbjct: 83 VKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 77.9 bits (191), Expect = 3e-17
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 2/120 (1%)
Query: 27 RARSANERLEWIDAIQTAIKENEQHLLSF-LNRRSLTQSSIPELNLGKVAPLWIPDSRVS 85
R + W A + K + E + A
Sbjct: 106 RNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAE 165
Query: 86 MCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRVCEECYHYLVQEFD 144
C RC F V R+HHCRACG++ CG CS + + RVCE CY L ++ +
Sbjct: 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAE 225
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 74.7 bits (184), Expect = 4e-17
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
G L K+ +NWK F+L++ ++ Y + L +I + G + ++ N
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68
Query: 268 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
+ +F++ + A + W+KA++ A+
Sbjct: 69 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108
Score = 38.5 bits (90), Expect = 3e-04
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 10 DYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIK 46
+ N F +I + L+A + ER EWI AIQ A +
Sbjct: 72 EEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 109
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 74.8 bits (184), Expect = 5e-17
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 204 TANDSGSQHSGWLHKKSGR----NWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYE 257
++ SG + G+L K G+ WK WF ++ +Y + ++D L SI +
Sbjct: 2 SSGSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAV 61
Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ + D + +F++K + + A +Q+ W++ ++
Sbjct: 62 FDC--KADAEEGIFEIKTPSRV-ITLKAATKQAMLYWLQQLQMK 102
Score = 41.3 bits (97), Expect = 4e-05
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 6 PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
+ + F + SR TL+A + L W+ +Q E
Sbjct: 64 CKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWE 105
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 75.2 bits (184), Expect = 7e-17
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY-ELEALNEQDNFK 268
G+L K R ++ YW L+ ++ Y + I + + ++ L N +
Sbjct: 20 FEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNC 79
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
F L ++ + +N +S E W + T LS
Sbjct: 80 AKFTLVLPKEE-VQLKTENTESGEEWRGFILTVTELS 115
Score = 43.6 bits (102), Expect = 1e-05
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFL 56
TE +F+++ L+ + EW I T + + +S L
Sbjct: 75 TEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVSLL 123
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 75.0 bits (184), Expect = 7e-17
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 207 DSGSQHSGWLHKKSG--------RNWKRYWFVLK-----DQVMYKYKASEDIKALLSIPV 253
G GWL+K + R++KR +F L + YK + K
Sbjct: 15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIF 74
Query: 254 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
L + + ++ F+LK Q + + AD+E E W+ + +
Sbjct: 75 LDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122
Score = 35.7 bits (82), Expect = 0.006
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 17 VIAISRSFTLRARSANERLEWIDAIQTAIKENEQ 50
+ S+ L A S E EWI + ++ N +
Sbjct: 95 KMQDKSSYLLAADSEVEMEEWITILNKILQLNFE 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 76.3 bits (187), Expect = 1e-16
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 24 FTLRARSANERLEWIDAIQTAIKENE-QHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDS 82
+R + W A +++ K + ++ L + T + E + A +
Sbjct: 100 ENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNWA 159
Query: 83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL-EYKKFRNFRVCEECYHYL 139
+C RC FT T R+HHCR CG+V CG C+ PL +Y + RVC+ C+ L
Sbjct: 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAAL 217
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 76.2 bits (187), Expect = 1e-16
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 212 HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 264
GWLH G RNWK+ WFVL+ + ++ + K ++ V + + +
Sbjct: 60 KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSA--KEIIDN 117
Query: 265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
N + + A++ + +W + +
Sbjct: 118 TNKENGIDIIM-ADRTFHLIAESPEDASQWFSVLSQV 153
Score = 46.5 bits (110), Expect = 3e-06
Identities = 14/71 (19%), Positives = 31/71 (43%)
Query: 13 NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLG 72
N +I R+F L A S + +W + +Q + + ++ Q+++ L++G
Sbjct: 122 NGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVG 181
Query: 73 KVAPLWIPDSR 83
+ + DS
Sbjct: 182 LIDSVCASDSP 192
Score = 33.8 bits (77), Expect = 0.039
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTA 44
VC + D N F +I +R A + E WI +Q +
Sbjct: 186 VCASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQRS 227
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 73.6 bits (181), Expect = 1e-16
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 207 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 264
S G+L K+ G + WK WF L + +K + + + + +
Sbjct: 15 PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS 74
Query: 265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
F L + A + W+K +R
Sbjct: 75 QERVNCFCLVFPFRT-FYLCAKTGVEADEWIKILRWK 110
Score = 42.4 bits (100), Expect = 2e-05
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHL 52
V +++ N F ++ R+F L A++ E EWI ++ + + + L
Sbjct: 69 VQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQL 118
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 73.7 bits (181), Expect = 1e-16
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY---ELEALNEQDN 266
+G+ K+ NWKR +F L + + +K+ + + L IP+ + ++
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 75
Query: 267 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+F++ + AD+ + W+KA+ A
Sbjct: 76 RDNLFEIVTTSR-TFYVQADSPEEMHSWIKAVSGA 109
Score = 42.1 bits (99), Expect = 3e-05
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ 50
+N F ++ SR+F ++A S E WI A+ AI
Sbjct: 77 DNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRG 115
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 73.5 bits (180), Expect = 2e-16
Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNEQD- 265
SG+L ++S +++ + ++VL ++++K ++ K ++S+ + + + ++
Sbjct: 8 KSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS 67
Query: 266 ---------NFKYVFQLKHQG----QDPLVFGADNEQSYERWMKAMREATTLS 305
+ K+V K G VF AD+ +S W ++ T+ S
Sbjct: 68 TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS 120
Score = 33.4 bits (76), Expect = 0.025
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 16 SVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
+I ++ +A S + W D ++ +
Sbjct: 88 GIIRRGHNWVFKADSYESMMSWFDNLKILTSTS 120
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 71.5 bits (175), Expect = 8e-16
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 207 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYEL- 258
SG +HSG+L + WK+ +FVL Y + + + + + GY +
Sbjct: 5 SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVD 64
Query: 259 --EALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
+ + + F +G D ++F +D+EQ W++AM AT
Sbjct: 65 YTDPQPGLEGGRAFFNAVKEG-DTVIFASDDEQDRILWVQAMYRAT 109
Score = 43.8 bits (103), Expect = 8e-06
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 6 PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
P E F+ + + + +R+ W+ A+ A +
Sbjct: 70 PGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQ 111
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 71.3 bits (175), Expect = 8e-16
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 212 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 268
SGWL K S R +++ W + Y +++ + IP+ +
Sbjct: 10 KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG----D 65
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
F++ + VF + E+ W+ + A
Sbjct: 66 NKFEVVTTQRT-FVFRVEKEEERNDWISILLNA 97
Score = 42.8 bits (101), Expect = 1e-05
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 4 CLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
+N+F V+ R+F R ER +WI + A+K
Sbjct: 57 ISTVRVQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS 100
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 74.7 bits (183), Expect = 3e-15
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 26/126 (20%)
Query: 6 PQTEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQ 63
+ +++ F +I + + L ++ + +W++ + AI
Sbjct: 465 RDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYP------------- 511
Query: 64 SSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTF----RRHHCRACGKVVC----GPCS 115
+ C+ C + TF R H CRA C PC
Sbjct: 512 ---ENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVPPCG 568
Query: 116 DYLAPL 121
+
Sbjct: 569 RHGQDF 574
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 69.7 bits (171), Expect = 3e-15
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 268
G++ KK R NW WFVLK ++ Y + + I + E+L ++D K
Sbjct: 10 KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKK 69
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+F +K + A +++ + W++A+
Sbjct: 70 CLFLVKCFDKT-FEISASDKKKKQEWIQAIHST 101
Score = 44.7 bits (106), Expect = 2e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46
LP + F V ++F + A ++ EWI AI + I
Sbjct: 62 LPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIH 103
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 69.6 bits (170), Expect = 4e-15
Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 206 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEA 260
D ++ G+L + + R +F+L Q + Y + A+ + V +L
Sbjct: 11 VDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTY 70
Query: 261 L--------NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
+ ++ + F + + A++++ + W++A+ +A+
Sbjct: 71 ISKVSIATPKQKPKTPFCFVI-NALSQRYFLQANDQKDLKDWVEALNQAS 119
Score = 42.6 bits (100), Expect = 2e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46
Q F + A+S+ + L+A + +W++A+ A K
Sbjct: 81 QKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK 120
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 68.8 bits (168), Expect = 9e-15
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 213 SGWLH--------KKSGRNWKRYWFVLKDQVMYKYK-----------ASEDIKALLSIPV 253
SG L+ +K +NW W VL + Y+ + S+ +
Sbjct: 15 SGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDL 74
Query: 254 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
G L + + V ++ + +D+E W +A+R
Sbjct: 75 RGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTV 122
Score = 31.4 bits (71), Expect = 0.15
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIKE 47
F L++ E W A++T I+
Sbjct: 100 HEFLLQSDHETELRAWHRALRTVIER 125
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 68.5 bits (167), Expect = 1e-14
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 24/113 (21%)
Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 269
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + +
Sbjct: 7 REGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRK-PN 65
Query: 270 VFQLKHQGQDPL---------------------VFGADNEQSYERWMKAMREA 301
F+L + A + + E WMK+++ +
Sbjct: 66 CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118
Score = 38.8 bits (90), Expect = 4e-04
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 15 FSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
V + + A S E+ EW+ +I+ +I +
Sbjct: 89 RVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 122
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 68.4 bits (167), Expect = 1e-14
Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 205 ANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKAL------ 248
+G H G++ +K S R+W + + K + YK + K+
Sbjct: 3 GTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFR 62
Query: 249 --LSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
S + +E ++ K+V ++K + A ++ +W+ +++ + +
Sbjct: 63 GEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDST 121
Score = 28.4 bits (63), Expect = 1.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIK 46
F L+A E +W+ +++
Sbjct: 95 ALFLLQAHDDTEMSQWVTSLKAQSD 119
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 67.2 bits (164), Expect = 2e-14
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 206 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
+ GS+ G+L KKS + W+R +K+ ++ A+ + + + +L +++
Sbjct: 6 SGYGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKPNA 64
Query: 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
E K F L F A++EQ Y W+ + +
Sbjct: 65 ED---KKSFDLISH-NRTYHFQAEDEQDYVAWISVLTNS 99
Score = 37.5 bits (87), Expect = 8e-04
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLS 54
+ F +I+ +R++ +A + + WI + + +E S
Sbjct: 64 AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMAFS 109
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 68.3 bits (166), Expect = 4e-14
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 208 SGSQHSGWLHKK------------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSI 251
S + GWLH + S R WK+ + VL+ +Y YK + + I
Sbjct: 1 SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60
Query: 252 PVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
V ++ + K VF+L + +F A++ W+K ++E++ L+
Sbjct: 61 SVNACLIDISYSETKRKNVFRLTTSDCE-CLFQAEDRDDMLAWIKTIQESSNLN 113
Score = 32.8 bits (74), Expect = 0.068
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 13 NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ 50
N F + +A ++ L WI IQ + NE+
Sbjct: 78 NVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEE 115
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 66.8 bits (163), Expect = 5e-14
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 22/113 (19%)
Query: 211 QHSGWLHKK---------SGRNWKRYWFVLKDQVMYKYK------------ASEDIKALL 249
+G LH+ ++W W VL+ V+ +K S+
Sbjct: 9 DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY 68
Query: 250 SIPVLGYELE-ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
++ + G L A ++ + K V +L+ + + D+E W KA+ +
Sbjct: 69 TVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
Score = 32.1 bits (73), Expect = 0.075
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 13 NEFSVIAISRS-FTLRARSANERLEWIDAIQTAIKE 47
N + + S + ++ S W AI I+E
Sbjct: 89 NVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQE 124
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 67.0 bits (163), Expect = 5e-14
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 213 SGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQD 265
L + ++++W V K+ + YK+ ++ + + + G E+
Sbjct: 12 KDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVS 71
Query: 266 NFKYVFQL---KHQGQDPLVFGADNEQSYERWMKAMREAT 302
K+ +L +G + +EQ Y RWM R A+
Sbjct: 72 GQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111
Score = 29.2 bits (65), Expect = 0.74
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSI 66
LR + + W+ + A K S+ + + +
Sbjct: 87 MSEIYLRCQDEQQYARWMAGCRLASKGRTMADSSYTSEVQAILAFL 132
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 66.9 bits (163), Expect = 5e-14
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVM---YKYKASEDIKALLSIPVLGYELEALNE--- 263
GWL ++S R WKR WF L Y + ++D + + I +++ E
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69
Query: 264 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
+ + + + L A+ W A+ EA +
Sbjct: 70 VQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP 116
Score = 35.7 bits (82), Expect = 0.005
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 6 PQTEDYNNEFSVI-AISRSFTLRARSANERLEWIDAIQTAI 45
P+ + +V L A + ++ + W A+ A
Sbjct: 73 PEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEAN 113
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 66.7 bits (162), Expect = 7e-14
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 25/124 (20%)
Query: 204 TANDSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
++ SG + WL + ++W + W VLK V+ YK ++ + + ++ + E+
Sbjct: 2 SSGSSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP 61
Query: 263 EQDNFKYVFQLKHQGQDP-----------------------LVFGADNEQSYERWMKAMR 299
+ + + F+L H + L+ A +E WM A+
Sbjct: 62 SKKD-GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120
Query: 300 EATT 303
A
Sbjct: 121 LALK 124
Score = 31.2 bits (70), Expect = 0.15
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 24 FTLRARSANERLEWIDAIQTAIKEN 48
+RA S ++ W+DA++ A+K
Sbjct: 102 LIIRATSESDGRCWMDALELALKSG 126
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 65.5 bits (160), Expect = 1e-13
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 14/110 (12%)
Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPV----- 253
++ SG + G L+KK + WK WFVL Q+ Y Y D + I +
Sbjct: 2 SSGSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRY-YDHRMDTECKGVIDLAEVEA 60
Query: 254 --LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
G + + K F +K + F A + S ++W+ ++
Sbjct: 61 VAPGTPTIGAPKTVDEKAFFDVKTTRRV-YNFCAQDVPSAQQWVDRIQSC 109
Score = 43.2 bits (102), Expect = 8e-06
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 6 PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
P+T D F V R + A+ +W+D IQ+ +
Sbjct: 71 PKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSG 113
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 64.9 bits (158), Expect = 2e-13
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 212 HSGWLHKKSG--RNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLGYELE--------- 259
SGWL ++S + WK+ WF L D + Y + + +
Sbjct: 7 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66
Query: 260 -ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
+ + + Q+ + + A++ W ++++ T
Sbjct: 67 TQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111
Score = 36.4 bits (84), Expect = 0.002
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 3 VCLPQTEDYNNEFSVI-AISRSFTLRARSANERLEWIDAIQTA 44
P + + ++ ++ +L A S ++ L W +Q +
Sbjct: 67 TQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 64.9 bits (158), Expect = 2e-13
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA 260
+ +D GWLHK+ + W+ +F+LK D YK P+ + +
Sbjct: 2 SMSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQ 61
Query: 261 ---LNEQDNFKYVFQLKHQGQ---DPLVFGADNEQSYERWMKAMREA 301
+ + F ++ F + + E W A++
Sbjct: 62 CQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 108
Score = 34.1 bits (78), Expect = 0.017
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 9 EDYNNEFSVIAISRSF----TLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
N F + + + T + ER EW AIQT ++ ++ RS
Sbjct: 69 RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQEEEEMDFRS 124
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 68.1 bits (165), Expect = 2e-13
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)
Query: 211 QHSGWLHKKSG--------------RNWKRYWFVLKDQVMYKYK------ASEDIKALLS 250
+ +G L K+ R WK YW LK ++ Y+ + +
Sbjct: 12 RKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHA 71
Query: 251 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
+ V ++A+ E +VF L + D +F ++ E W+ A+ A +
Sbjct: 72 VWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAA 126
Score = 30.3 bits (67), Expect = 0.67
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELN 70
+F + S E WI AI +A + L +S I +L
Sbjct: 100 DAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTLRLLKSEIKKLE 148
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 64.1 bits (156), Expect = 4e-13
Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVM----YKYKASEDIKALLSIPVLGYE 257
++ SG G+L K + W+ +FVL ++ + + S + K ++ + G
Sbjct: 2 SSGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAV 61
Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ +E + F + + A + + + W+ ++
Sbjct: 62 ISPSDEDSH---TFTVNAASGEQYKLRATDAKERQHWVSRLQIC 102
Score = 40.3 bits (94), Expect = 1e-04
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 12 NNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENEQHL 52
++ F+V A S + LRA A ER W+ +Q + + + +
Sbjct: 69 SHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAI 110
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 64.2 bits (156), Expect = 4e-13
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 16/114 (14%)
Query: 208 SGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPV 253
SG Q G L +K + R+W+ + VL+ + YK AS + +PV
Sbjct: 6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65
Query: 254 LGYELEALNEQDNFK--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
+ D K +VF+L Q +F A +E W++ + A
Sbjct: 66 SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119
Score = 29.1 bits (65), Expect = 0.68
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIKE 47
+ + +A+ E W+ + AI
Sbjct: 93 KEYLFQAKDEAEMSSWLRVVNAAIAS 118
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 64.4 bits (156), Expect = 9e-13
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 222 RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLK---HQ 276
+ +K+YW KD + YK+ E+ + + G E+ K+ +L +
Sbjct: 64 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAE 123
Query: 277 GQDPLVFGADNEQSYERWMKAMREAT 302
G + + DNE+ Y WM A R A+
Sbjct: 124 GMNEIWLRCDNEKQYAHWMAACRLAS 149
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 63.1 bits (153), Expect = 1e-12
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 213 SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNF 267
GWL + K YWFVL + + YK E+ + + V +L + + +
Sbjct: 15 KGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSS 74
Query: 268 KYVFQLKHQGQ-------DPLVFGADNEQSYERWMKAMREA 301
K++F L + Q L + ++ + W + A
Sbjct: 75 KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 60.8 bits (147), Expect = 7e-12
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 30/125 (24%)
Query: 207 DSGSQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIK---ALLSIPVLGYEL- 258
+S + G+L W R W VL + + +D K + I +
Sbjct: 2 NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSR 61
Query: 259 ---EALNEQDNFKYVFQLK-------------------HQGQDPLVFGADNEQSYERWMK 296
A E + F+L AD ++ + WM+
Sbjct: 62 QIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQ 121
Query: 297 AMREA 301
+ +
Sbjct: 122 KLNQV 126
Score = 31.9 bits (72), Expect = 0.089
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIK 46
L A + ER W+ + +
Sbjct: 103 VTKNWLSADTKEERDLWMQKLNQVLV 128
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 60.8 bits (147), Expect = 7e-12
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 213 SGWLHKK---------SGRNWKRYWFVLKDQVMYKYKASED---------IKALLSIPVL 254
G L +K + +W RYW VL + Y A + ++
Sbjct: 4 EGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIV 63
Query: 255 GYELEALNEQDNFKYVFQLKH-QGQDPLVFGADNEQSYERWMKAMREATT 303
G+ ++ ++ ++ +FQL + + F + W K + +A
Sbjct: 64 GWMVQLPDDPEH-PDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK 112
Score = 28.8 bits (64), Expect = 1.0
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 22 RSFTLRARSANERLEWIDAIQTAIKENEQ----HLLSF 55
+ + S + W + A K + +L+SF
Sbjct: 88 NVYKFQTGSRFHAILWHKHLDDACKSSRPQVPANLMSF 125
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 59.8 bits (145), Expect = 8e-12
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 213 SGWLHKKSG--RNWKRYWFVLKDQVMY--KYKASEDIKALLSIPVLGYELEALNEQDNFK 268
G L+K + W+ WFVL + ++ + + SI + E++ + +
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTR- 60
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+L G+ A N +RW+ A+ +
Sbjct: 61 --MELIIPGEQHFYMKAVNAAERQRWLVALGSS 91
Score = 39.4 bits (92), Expect = 1e-04
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
+ D +I + F ++A +A ER W+ A+ ++
Sbjct: 50 EIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSK 92
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 62.7 bits (151), Expect = 1e-11
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 211 QHSGWLHKK--------------SGRNWKRYWFVLKDQVMYKYKASEDIKALLS------ 250
+ +GWL K + R WK+YW LK + Y+ +
Sbjct: 12 RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71
Query: 251 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ ++++ E ++VF L + D +F A ++ E W+ A+ A
Sbjct: 72 LFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 59.2 bits (143), Expect = 2e-11
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 214 GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLGYE 257
G+L++K S R+W + V+ +Q M YK ++ + + +
Sbjct: 3 GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62
Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
E + K+VF+L+ + +F A +++ W++A+ A
Sbjct: 63 CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
Score = 26.8 bits (59), Expect = 4.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 22 RSFTLRARSANERLEWIDAIQTA 44
+ +A+ E WI AI +A
Sbjct: 84 NEYLFQAKDDEEMNTWIQAISSA 106
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 59.4 bits (143), Expect = 2e-11
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 76 PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEEC 135
P C+ C + F T R+ C C K C C + R+C C
Sbjct: 11 SFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTC-------SSQVGNGPRLCLLC 63
Query: 136 YHYLVQEFDDED 147
+ F E+
Sbjct: 64 QRFRATAFQREE 75
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 57.8 bits (140), Expect = 3e-11
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 213 SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFK 268
G L K + W+ W VLK+ + YK+ ++ SI + + + +
Sbjct: 4 CGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECR- 62
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
F + A + ++W+ A+ + T
Sbjct: 63 --FDISVNDSV-WYLRAQDPDHRQQWIDAIEQHKT 94
Score = 42.8 bits (101), Expect = 8e-06
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
+ + F + + LRA+ + R +WIDAI+
Sbjct: 51 AVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 55.8 bits (134), Expect = 6e-09
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 7/137 (5%)
Query: 5 LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQS 64
F + I R +TLR + NER W+ I+ A ++ ++
Sbjct: 321 PTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQ-REKAYQAR 379
Query: 65 SIPELNLGKVAPLWIPDSRVSMC-----QRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119
S +G++ I + + C ++ + + R + P ++
Sbjct: 380 SQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLN-PKWNFNC 438
Query: 120 PLEYKKFRNFRVCEECY 136
K +C +
Sbjct: 439 QFFIKDLYQDVLCLTLF 455
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 53.2 bits (127), Expect = 7e-09
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 212 HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALL-SIP------VLGYE 257
L K+S N+K FVL ++ Y+ + K I V +
Sbjct: 17 LEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVK 76
Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
+ KY FQ+ H + L A + QS + W+K ++E
Sbjct: 77 NDDGVIPCQNKYPFQVVHD-ANTLYIFAPSPQSRDLWVKKLKEEI 120
Score = 37.4 bits (86), Expect = 0.002
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF 55
F V+ + + + A S R W+ ++ IK N ++ +
Sbjct: 85 QNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIMIKY 130
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 54.2 bits (129), Expect = 2e-08
Identities = 17/146 (11%), Positives = 53/146 (36%), Gaps = 8/146 (5%)
Query: 162 DNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKS- 220
++ T + + + N + ++ +G+L+ ++
Sbjct: 230 GTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNRNLTRKAGYLNARNK 289
Query: 221 ----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLK-H 275
W R ++ + + D+ L++ + + A++ +D +Y FQ+
Sbjct: 290 TGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDCEDR-RYCFQITSF 347
Query: 276 QGQDPLVFGADNEQSYERWMKAMREA 301
G+ + A++++ +E W+ +
Sbjct: 348 DGKKSSILQAESKKDHEEWICTINNI 373
Score = 36.1 bits (82), Expect = 0.010
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 3 VCLPQTEDYNNEFSVIAI--SRSFTLRARSANERLEWIDAIQTAIKE 47
V ED F + + +S L+A S + EWI I K+
Sbjct: 330 VMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQ 376
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 50.3 bits (120), Expect = 4e-08
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 212 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQDNFK 268
+ + + +F+L V+ AS + + IP+ G + L+E +
Sbjct: 32 SQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSD 91
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
+F++ + +V +N Q ++ WM+ + T
Sbjct: 92 CMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125
Score = 39.2 bits (91), Expect = 3e-04
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 1 MKVC-LPQTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIK 46
M V L + E + F + + + + EW++ + K
Sbjct: 79 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK 126
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 51.6 bits (123), Expect = 1e-07
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 212 HSGWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPV----LGYELEALN-- 262
G++ K + +++ WF + D+ + +K D A + + GY +
Sbjct: 271 KEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPP 330
Query: 263 --EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ ++ + + + +F + E W+ A ++A
Sbjct: 331 STQGHHWPHGITIVTPDRK-FLFACETESDQREWVAAFQKA 370
Score = 39.7 bits (92), Expect = 9e-04
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
Q + + +++ R F + +++ EW+ A Q A+
Sbjct: 333 QGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAV 371
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 48.3 bits (114), Expect = 2e-07
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 214 GWLHK--KSGRNWKRYWFVLKDQVMYKYKASEDIKALLS---------IPVLGYELEALN 262
G L+ + W R++ + D + E + + + Y +
Sbjct: 16 GELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAP 75
Query: 263 EQDNFK-YVFQLKHQGQD--PLVFGADNEQSYERWMKAMREAT 302
+ N K +VF L+ + Q P+ F D + W +++RE T
Sbjct: 76 QGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 48.8 bits (115), Expect = 2e-07
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 11/119 (9%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIP 80
+ L + E +Q + R + I + + +
Sbjct: 9 GKRLDLSTLTDEEAEHVWAVVQRDFDLRRREE----ERLQGLKGKIQKESSKRELLSDTA 64
Query: 81 DSRVSMCQRCTSVFTVTF-RRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHY 138
+ C RC + + R C C VC CS +C+ C+
Sbjct: 65 HLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH------PEEQGWLCDPCHLA 117
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 49.9 bits (118), Expect = 3e-07
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 204 TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASEDIKALLSIPVLGY 256
+ S + G+L K ++ + +FVL+ + Y+ + + S P
Sbjct: 4 SDGFSDVRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSI 61
Query: 257 ELE-----ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
LE K++ L + + AD+E + W +A+ +
Sbjct: 62 PLESCFNINKRADSKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQL 110
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 47.1 bits (112), Expect = 4e-07
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 5 LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
+ + F ++ S +A +A + EW++ ++ +
Sbjct: 66 VKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRA 108
Score = 36.4 bits (84), Expect = 0.002
Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 212 HSGWLHKKSGRNWK----RYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQ 264
++G L + + + F++ D ++ + + P+ + + +
Sbjct: 10 YNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDN 69
Query: 265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
K +F+L + +F A+N + W++ + E
Sbjct: 70 PPMKDMFKLLM-FPESRIFQAENAKIKREWLEVLEET 105
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 49.4 bits (117), Expect = 4e-07
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 200 LIEVTANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMY-----KYKASEDIKALLSIP 252
L + S + G+LH K +WK+ + L+ +Y A ++ L +
Sbjct: 122 LQNFLNSSSSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLE 181
Query: 253 VLG-YELEAL--NEQDNFKYVFQLKHQG-----QDPLVFGADNEQSYERWMKAMREA 301
+ L A + +K ++ + A++EQ+ WM A R
Sbjct: 182 DSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLL 238
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 45.6 bits (107), Expect = 2e-06
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 27/116 (23%)
Query: 213 SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASED-----------------IKALLSI 251
+L K+SG WK+ + L Y S + +K
Sbjct: 7 QSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKR 66
Query: 252 PVLGYELEA------LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
P + + + F + F A + + + W++A+
Sbjct: 67 PPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQ 122
Score = 38.7 bits (89), Expect = 4e-04
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
E+ V + +++ A S ER W+ AI++ I
Sbjct: 86 EEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 2e-06
Identities = 42/294 (14%), Positives = 92/294 (31%), Gaps = 83/294 (28%)
Query: 46 KENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVT---FRRHH 102
E + LL +L+ R +P L P + S+ T ++ +
Sbjct: 301 DEVKSLLLKYLDCRP---QDLPREVL-TTNPRRL-----SIIAESIRDGLATWDNWKHVN 351
Query: 103 CRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAV--ANV 160
C ++ + L P EY+K + L F +++ + ++ +V
Sbjct: 352 CDKLTTII-ESSLNVLEPAEYRK---------MFDRLSV-FP-PSAHIPTILLSLIWFDV 399
Query: 161 EDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKS 220
+ ++M ++ + ++ K+ +P +E+ LH+
Sbjct: 400 IKS----DVMVVVNK-LHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYA---LHRS- 448
Query: 221 GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV-------LGYELEALN---EQDNFKYV 270
+ D Y + D L+ + +G+ L+ + F+ V
Sbjct: 449 ----------IVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 271 FQ--------LKHQGQDPLVFGA----------------DNEQSYERWMKAMRE 300
F ++H G+ DN+ YER + A+ +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 37.1 bits (85), Expect = 0.007
Identities = 37/227 (16%), Positives = 66/227 (29%), Gaps = 64/227 (28%)
Query: 1 MKVCLPQ--TEDYNNEFSVIAISRSFTLRARSANERLE--WIDAIQTAIKENEQHLLSFL 56
++ L +Y F +++ F A L W D I K + +++ L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVI----KSDVMVVVNKL 411
Query: 57 NRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHH--CRACGKVVCGPC 114
++ SL + E + IP + + + + H +
Sbjct: 412 HKYSLVEKQPKESTIS------IPSIYLELKVKLENE-----YALHRSIVDHYNIPKTFD 460
Query: 115 SDYLAPLE---YKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMD 171
SD L P Y F + +H L E +F V +D
Sbjct: 461 SDDLIPPYLDQY--FYSHIG----HH-LKNIEHPERMTLFRMV--------------FLD 499
Query: 172 I--IRSNFKEMGTAGRRKPS--------KKYRKYV------PQRLIE 202
+ + TA S K Y+ Y+ +RL+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Score = 31.0 bits (69), Expect = 0.56
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 111 CGPCSDYLAPL----EYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQV 166
C D + E + L + M ++ VE+ +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-----VEEVLR- 88
Query: 167 TN---MMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDS 208
N +M I++ ++ PS R Y+ QR + ND+
Sbjct: 89 INYKFLMSPIKTEQRQ--------PSMMTRMYIEQR--DRLYNDN 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 3e-06
Identities = 54/319 (16%), Positives = 90/319 (28%), Gaps = 133/319 (41%)
Query: 17 VIAISRS---FTLRARSANERLEWI---------------DAIQTAIKENEQ---HLLSF 55
IA + S F + R A L +I ++ +++ NE +LS
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 56 --LNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVF-TVTFRRHHCRACGKVVCG 112
L + + Q + + N P +V + S+ ++ VV G
Sbjct: 342 SNLTQEQV-QDYVNKTN--SHLP---AGKQVEI-----SLVNG---AKNL------VVSG 381
Query: 113 PCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDI 172
P L L R + KA + +D
Sbjct: 382 PPQS-LYGLN----LTLR----------------------KAKAPSG----------LDQ 404
Query: 173 IRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQ--HSGWLHKKSGRNWKRYWFV 230
R F E RK R ++P V + HS L S +
Sbjct: 405 SRIPFSE------RKLKFSNR-FLP-----VAS------PFHSHLLVPASDL-------I 439
Query: 231 LKDQVMY--KYKASEDIKALLSIPVL----GYELEALNEQDNFKYVFQLKHQGQDPLVFG 284
KD V + A + + IPV G +L L+ + + V + P+
Sbjct: 440 NKDLVKNNVSFNAKD-----IQIPVYDTFDGSDLRVLSGSISERIVDCIIR---LPV--- 488
Query: 285 ADNEQSYERWMKAMREATT 303
+W + T
Sbjct: 489 --------KWETTTQFKAT 499
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 44.9 bits (105), Expect = 6e-06
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 38/127 (29%)
Query: 213 SGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASED----IKALLSIPV-------- 253
K+S N+K+ F+L + Y+ + SI V
Sbjct: 6 ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65
Query: 254 ------------------LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
E+E ++ + F Y FQ+ + + PL + E+ +RW+
Sbjct: 66 VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVY-DEGPLYVFSPTEELRKRWI 124
Query: 296 KAMREAT 302
++
Sbjct: 125 HQLKNVI 131
Score = 37.6 bits (86), Expect = 0.002
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF 55
E + F V+ + + + R WI ++ I+ N + +
Sbjct: 93 IIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLVQKY 141
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 43.0 bits (101), Expect = 7e-05
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 5 LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQS 64
+ + E A + ++A + + W++AI+ + Q R+L QS
Sbjct: 284 NVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQACREASQHRALEQS 343
Query: 65 S 65
Sbjct: 344 H 344
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 42.6 bits (100), Expect = 8e-05
Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 16/169 (9%)
Query: 150 MFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSG 209
V++ + + + S + + K + Q+ I+
Sbjct: 182 ALLNVQSGME-KICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDI 240
Query: 210 SQHSGWLHK-----KSGRNWKRYWFVLKDQVMY------KYKASEDIKALLS----IPVL 254
Q + G +R+ F+ ++ + + A +
Sbjct: 241 GQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMR 300
Query: 255 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
++ ++ + +K+ F++ + ++ ++F A + + WM A+
Sbjct: 301 KVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 349
Score = 37.2 bits (86), Expect = 0.004
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 5 LPQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKEN 48
T +Y + F +I S A+SA E+ W+ A+ + +
Sbjct: 307 KDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRS 351
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 42.5 bits (100), Expect = 9e-05
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 20/96 (20%)
Query: 9 EDYNNEFSVIAISR--SFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSI 66
N F + A+ E++ W+ A + K + I
Sbjct: 324 VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKM--------VQEDEKIGFEI 375
Query: 67 PELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHH 102
E + +M R S VT R+ H
Sbjct: 376 SENQ----------KRQAAMTVRKASKQKVTQRKWH 401
Score = 35.2 bits (81), Expect = 0.022
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 212 HSGWLHKKSGRNWK---RYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQD 265
++G + + R +F+ Q++ K L I + YE+ + +
Sbjct: 259 YTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 318
Query: 266 N------FKYVFQLKH-QGQDPLVFGADNEQSYERWMKAMREA 301
+ K F+L + + ++ +F A + RW++A RE
Sbjct: 319 DDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREE 361
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 40.4 bits (94), Expect = 1e-04
Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 210 SQHSGWLH--KKSGR---NWKRYWFVLKDQVMYKYKASEDIKALLSIPVL----GYELEA 260
S+ GWL ++ W + + ++ + + Y + +D + VL + +
Sbjct: 1 SRLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRP 60
Query: 261 LNEQD-------NFKYVFQLKHQGQDP-----LVFGADNEQSYERWMKAMREA 301
+ + D +FQ+ + + L+ A++ + ++W+ + +
Sbjct: 61 VTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 42.4 bits (100), Expect = 1e-04
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 205 ANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA- 260
+D GWLHK+ + W+ +F+LK D YK P+ + +
Sbjct: 1 GSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQC 60
Query: 261 --LNEQDNFKYVF---QLKHQGQDPLVFGADNEQSYERWMKAMRE 300
+ + F L+ F + + E W A++
Sbjct: 61 QLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQT 105
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 39.1 bits (91), Expect = 0.001
Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 2 KVCLPQTEDYNNEFSVIAIS-----RSFTLRARSANERLEWIDAIQTAIKENEQH 51
V + F +I S + + L A +++++ W++ ++ A++ H
Sbjct: 359 AVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHHH 413
Score = 31.0 bits (70), Expect = 0.45
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 20/110 (18%)
Query: 212 HSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLS-----------------IP 252
H G L + ++ + +L+D ++ K E + +
Sbjct: 297 HEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLK 356
Query: 253 VLGYELEALNEQDNFKYVFQLKHQGQDP-LVFGADNEQSYERWMKAMREA 301
+ + ++ ++ G A WM+ + EA
Sbjct: 357 LNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEA 406
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 36.8 bits (84), Expect = 0.002
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 46 KENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRV-----SMCQRCTSVFTVTFRR 100
E ++ + + R ++ E V L V + C C +
Sbjct: 12 DEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSA 71
Query: 101 HH-CRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECY 136
C C K VC C + + +C+ C
Sbjct: 72 SVVCEDCKKNVCTKCGVETSN---NRPHPVWLCKICL 105
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 37.5 bits (87), Expect = 0.003
Identities = 8/50 (16%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 2 KVCLPQTEDYNNEFSVIAIS-----RSFTLRARSANERLEWIDAIQTAIK 46
V + F +I S + + L A +++++ W++ ++ A++
Sbjct: 317 AVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR 366
Score = 29.4 bits (66), Expect = 1.6
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 20/110 (18%)
Query: 212 HSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA--------- 260
H G L + ++ + +L+D ++ K E + ++
Sbjct: 255 HEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLK 314
Query: 261 -----LNEQDNFKYVFQLKH----QGQDPLVFGADNEQSYERWMKAMREA 301
+ K F + A WM+ + EA
Sbjct: 315 LNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEA 364
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 37.5 bits (87), Expect = 0.004
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 7 QTEDYNNEFSVIAISR-----SFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSL 61
+ F++ + + L+A WI + ++ L + +
Sbjct: 274 NLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQRDFLNALQSPIEY 333
Query: 62 TQSSIPELNLGK 73
+ +LG+
Sbjct: 334 QRRESQTNSLGR 345
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 37.7 bits (87), Expect = 0.004
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 2 KVCLPQTEDYNNEFSVI----AISRSFTLRARSANERLEWIDAIQTAI 45
+ + F V+ ++ + L A++ +ER W I
Sbjct: 476 SAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETA 523
Score = 34.3 bits (78), Expect = 0.046
Identities = 20/148 (13%), Positives = 35/148 (23%), Gaps = 22/148 (14%)
Query: 176 NFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGS---QHSGWLHKKSGRNWK--RYWFV 230
+ + RR R+ L E D H G L + ++ + +
Sbjct: 375 DLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLL 434
Query: 231 LKDQVMY------KYKASEDIKALLSIPVLGYELEALN-----------EQDNFKYVFQL 273
L D ++ + + L P L + YV
Sbjct: 435 LDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFT 494
Query: 274 KHQGQDPLVFGADNEQSYERWMKAMREA 301
Q A + W + E
Sbjct: 495 WDQEAQIYELVAQTVSERKNWCALITET 522
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 36.6 bits (84), Expect = 0.004
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 61 LTQSSIPELNLGKVAPLWIPDSRVSM-CQRCTSVFTVTFRRHH-----CRACGKVVCGPC 114
+T+ SI + P+ + + C C R C CG V+
Sbjct: 2 MTRESIDKRA-----GRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKL 56
Query: 115 SDYLAPLEYKKFRN 128
D E++ F N
Sbjct: 57 VDT-RS-EWRTFSN 68
Score = 27.3 bits (60), Expect = 5.4
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 108 KVVCGPCSDYLAPLEYKKFRNFRVCEEC 135
+ C C Y + + VC C
Sbjct: 21 VLTCPECKVYPPKIVERFSEGDVVCALC 48
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 37.2 bits (86), Expect = 0.005
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKENEQ 50
++ + L A++ +E+ W D I ++
Sbjct: 344 AQIYELVAQTVSEKTVWQDLICRMAASVKE 373
Score = 34.5 bits (79), Expect = 0.038
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 19/109 (17%)
Query: 212 HSGWLHKKSGRNWK--RYWFVLKDQVMY------KYKASEDIKALLS-----------IP 252
H G L K R+ Y +L+D ++ + K L S I
Sbjct: 259 HEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIK 318
Query: 253 VLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ + + + +V + G A W +
Sbjct: 319 LSTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRM 367
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 35.8 bits (82), Expect = 0.005
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 1 MKVCLPQTEDYNNEFSVI------AISRSFTLRARSANERLEWIDAIQTAIKENEQ 50
M+V L + + Y N + I A + +R ++ D ++ +I E ++
Sbjct: 71 MQVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQE 126
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 37.0 bits (86), Expect = 0.005
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 1 MKVCLPQTEDYNNEFSVI----AISRSFTLRARSANERLEWIDAIQTAIK 46
++ E N F V + S++ +L+A + +W++ I+ A +
Sbjct: 297 LRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAKE 346
Score = 33.2 bits (76), Expect = 0.089
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 25/113 (22%)
Query: 212 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLS-----IPVLGYELEALNEQD- 265
G L G K + F+ ++ ++ + + + IPV LE L + +
Sbjct: 234 CHGELKNNRGV--KLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEV 291
Query: 266 --------------NFKYVFQLKH---QGQDPLVFGADNEQSYERWMKAMREA 301
K F++ A++ + ++W+ +R+A
Sbjct: 292 RLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQA 344
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 36.9 bits (85), Expect = 0.006
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 14 EFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELN 70
A S L R ++ W+ A ++ + T SI EL
Sbjct: 408 RLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQL--------DQETGFSITELQ 456
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 36.8 bits (85), Expect = 0.006
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 2 KVCLPQTEDYNNEFSVI----AISRSFTLRARSANERLEWIDAIQTAI 45
+ + F V+ ++ + L A++ +ER W I
Sbjct: 323 SAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETA 370
Score = 34.5 bits (79), Expect = 0.038
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 19/109 (17%)
Query: 212 HSGWLHKKSGRNWK--RYWFVLKDQVMY------KYKASEDIKALLSIPVLGYELEALN- 262
H G L + ++ + +L D ++ + + L P L +
Sbjct: 261 HEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 320
Query: 263 ----------EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
YV Q A + W + E
Sbjct: 321 LTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITET 369
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 36.9 bits (85), Expect = 0.007
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 21 SRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF 55
R F L S R +++ ++ + +++ + L
Sbjct: 341 ERVFHLCCSSPESRKDFLKSVHSILRDKHRRQLLK 375
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 35.2 bits (80), Expect = 0.007
Identities = 12/109 (11%), Positives = 29/109 (26%), Gaps = 19/109 (17%)
Query: 214 GWLHKKSG----------RNWKRYWFVLK------DQVMYKYKASEDIKALLSIP---VL 254
G L W++ +L+ + + + + +SIP ++
Sbjct: 22 GALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAII 81
Query: 255 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
E F LK + + + W+ ++
Sbjct: 82 EVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD 130
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 35.4 bits (81), Expect = 0.012
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 2 KVCLPQTEDYNNEFSVIAISRS----FTLRARSANERLEWIDAIQTAIK 46
K+ + + +I++ + + A S ER WI IQ I
Sbjct: 124 KLIVREVAHEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTIN 172
Score = 32.4 bits (73), Expect = 0.11
Identities = 9/98 (9%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 212 HSGWLHKKSGRNWK--RYWFVLKDQVMY------KYKASEDIKALLSIPVLGYELEALNE 263
G + K+ +L D +++ KY + + I + + +
Sbjct: 73 RDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAH 132
Query: 264 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
++ ++ + + + A +++ W++ +++
Sbjct: 133 EEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDT 170
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 35.5 bits (82), Expect = 0.014
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 5 LPQTEDYNNEFSVIAIS---RSFTLRARSANERLEWIDAIQTAIKE 47
+ + V L+A S + +WI I+ I+E
Sbjct: 264 HVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 33.8 bits (77), Expect = 0.022
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 28/123 (22%)
Query: 204 TANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLG 255
++ SG GW+ + R KR+++ L + + ++ K IP +
Sbjct: 2 SSGSSGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISS 61
Query: 256 YELEALNEQDNFKYVFQLKHQ------GQDPLV-----------FGADNEQSYERWMKAM 298
Q + + F++ G++ G D QS W KA+
Sbjct: 62 PRDFTNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQS---WEKAI 118
Query: 299 REA 301
R+A
Sbjct: 119 RQA 121
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 125
Score = 32.7 bits (74), Expect = 0.044
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 18/107 (16%)
Query: 213 SGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLGYELEALNEQ 264
GW+ S + KR+++ L + + ++ + + IP V + +L
Sbjct: 11 EGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPP 70
Query: 265 DNFKYVFQLK----------HQGQDPLVFGADNEQSYERWMKAMREA 301
+ F++ G P ++ W A+R+A
Sbjct: 71 GTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA 117
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 33.3 bits (75), Expect = 0.061
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 213 SGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASEDI------KALLSIPVLGYELE 259
G + + G+ WK W VL+ +M YK + ++ L++ + LE
Sbjct: 12 EGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDI-CGLE 70
Query: 260 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
+ + + ++ G D+ ++ W +R A
Sbjct: 71 PALPYEGLAHTLAIICL-SQAVMLGFDSHEAMCAWDTRIRYA 111
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 30.9 bits (70), Expect = 0.074
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 82 SRVSMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEEC 135
S S C +C +A C C + LA + + K +C C
Sbjct: 3 SGSSGCHQCGEFIIGRV----IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPC 58
Query: 136 YH 137
++
Sbjct: 59 HN 60
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural
genomics, protein structure initiative; 1.74A
{Archaeoglobus fulgidus} SCOP: e.71.1.1
Length = 205
Score = 32.6 bits (74), Expect = 0.11
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 17 VIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNL 71
V I R + + E I+ IK++E+ + F N+ + + +L L
Sbjct: 82 VYKIKRRLRYEDLTPAAKTELPYVIEHIIKQDEKKYVDFFNKADSITTRMHQLEL 136
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 31.6 bits (71), Expect = 0.13
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 24/109 (22%)
Query: 212 HSGWLHKKS----GRNWKRYWFVLKDQVMY------KYKASEDIKALLS----------I 251
G+L+ + G+ W+R+ L + E + + +
Sbjct: 14 KQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCL 73
Query: 252 PVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300
V EA + +D F L+ + + + A + + W++A+
Sbjct: 74 RVAEAGGEASSPRD--TSAFFLETK-ERLYLLAAPAAERGD-WVQAICL 118
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 76
Score = 29.2 bits (65), Expect = 0.41
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 86 MCQRCTSVFTVTFRR-HHCRACGKVVCGPCSDY 117
C RC + + CR C +VC C
Sbjct: 27 TCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ 59
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 30.5 bits (69), Expect = 0.63
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 20/135 (14%)
Query: 97 TFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHY-----------LVQEFDD 145
+F HC CGKV P + + L ++F C+ C L F +
Sbjct: 133 SFAHCHCIGCGKVY--PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSE 190
Query: 146 EDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTA 205
N E ++ H ++ I+ +GT+ P + +P+++ V
Sbjct: 191 TWLNDSEWLREKITTSGKHPQQPLV-IV------VGTSLAVYPFASLPEEIPRKVKRVLC 243
Query: 206 NDSGSQHSGWLHKKS 220
N + +
Sbjct: 244 NLETVGDFKANKRPT 258
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 30.4 bits (68), Expect = 0.64
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 202 EVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE 259
++T GWL K GR WKR WF+L D +Y ++ + D + IP+ +
Sbjct: 205 DLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR 264
Query: 260 ALNEQDNFKYVFQLKHQGQDP---------------------LVFGADNEQSYERWMKAM 298
+ E F+L + A + + E WMK++
Sbjct: 265 EV-EDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 323
Query: 299 REATTLS 305
+ + +
Sbjct: 324 KASISRD 330
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3
aldehyde dehyd adduct, covalent catalysis, mandelate
racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas
putida} PDB: 3lv1_A*
Length = 457
Score = 30.0 bits (68), Expect = 0.91
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 25 TLRARSANERLEWIDAIQTAIKENEQHLLSFLN---RRSLTQSSIPEL 69
T R + ++ ++ A+ N++ L S L + + E+
Sbjct: 43 TRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEI 90
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 29.4 bits (65), Expect = 0.95
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 185 RRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED 244
++ + ++V LI G + K+ G +R +L + Y +
Sbjct: 36 KQAGGNPWHQFVENNLIL---------KMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVN 86
Query: 245 IKALLSIP 252
IP
Sbjct: 87 KVLKGEIP 94
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 30.2 bits (69), Expect = 0.97
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 25 TLRARSANERLEWIDAIQTAIKENEQHLLSFLN---RRSLTQSSIPEL 69
+ R R R++ ++A+Q I+E EQ L+ L ++ + E+
Sbjct: 33 SGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEV 80
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP:
b.55.1.1
Length = 150
Score = 29.3 bits (65), Expect = 1.0
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 215 WLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK-YVFQL 273
+ + + + + D+ + V ++ E N + +VF +
Sbjct: 63 LFQGPNPAI-----LEPEREHLDENSPLGDL-LRGVLDVPACQIAIRPEGKNNRLFVFSI 116
Query: 274 KH--QGQDPLVFGADNEQSYERWMKAMREAT 302
Q L AD+++ + W+K +RE
Sbjct: 117 SMPSVAQWSLDVAADSQEELQDWVKKIREVA 147
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 29.4 bits (65), Expect = 1.3
Identities = 10/71 (14%), Positives = 24/71 (33%)
Query: 203 VTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
++ + + + K+Y VL V Y+ + E+ +++ L
Sbjct: 119 LSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRK 178
Query: 263 EQDNFKYVFQL 273
Q Y ++
Sbjct: 179 LQPAAMYEIKV 189
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 27.3 bits (61), Expect = 1.3
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 81 DSRVSMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEE 134
S S C +C T + VC C L+ + +F C
Sbjct: 2 SSGSSGCVQCKKPITTGG----VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLN 57
Query: 135 CYH 137
C+
Sbjct: 58 CFC 60
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 27.4 bits (61), Expect = 1.4
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 85 SMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEECYHY 138
+ C+RC + G++ VC C + +F + CE +
Sbjct: 12 ATCERCKG--GFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69
Query: 139 L 139
L
Sbjct: 70 L 70
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 29.4 bits (65), Expect = 1.7
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 212 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA----------- 260
G L + G +R+ F+ ++ K++ L Y L+
Sbjct: 446 MEGTL-TRVGAKHERHIFLFDGLMICC-KSNHGQPRLPGASNAEYRLKEKFFMRKVQIND 503
Query: 261 LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300
++ + +K+ F++ + ++ ++F A + + WM A+
Sbjct: 504 KDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALIS 543
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 27.0 bits (60), Expect = 1.9
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 85 SMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEECYHY 138
S C C TV G+ +C C L + + C CY
Sbjct: 6 SGCSACG--ETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63
Query: 139 L 139
Sbjct: 64 K 64
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 285
Score = 28.7 bits (65), Expect = 2.1
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 10/37 (27%)
Query: 103 CRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYL 139
C C K++ Y L N VC C H++
Sbjct: 33 CPKCKKIM------YTKELA----ENLNVCFNCDHHI 59
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 28.1 bits (62), Expect = 2.3
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 7/49 (14%)
Query: 87 CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEEC 135
C C C VC PC P Y + + C+ C
Sbjct: 19 CHECRPG---NGMVSRCSRSQNTVCRPC----GPGFYNDVVSSKPCKPC 60
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 28.8 bits (64), Expect = 2.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 97 TFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEEC 135
+F HC CGKV P + + L ++F C+ C
Sbjct: 141 SFAHCHCIGCGKVY--PPQVFKSKLAEHPIKDFVKCDVC 177
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 26.2 bits (58), Expect = 3.2
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 8/59 (13%)
Query: 85 SMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEECYH 137
S CQ C R+ G +C C + + N C CY
Sbjct: 6 SGCQECKKTIMPGTRK--MEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYE 62
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 26.2 bits (58), Expect = 3.5
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 85 SMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEECYHY 138
+ C+RC + G++ VC C + +F + CE +
Sbjct: 12 ATCERCKG--GFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69
Query: 139 L 139
L
Sbjct: 70 L 70
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 26.3 bits (58), Expect = 3.7
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 6/57 (10%)
Query: 87 CQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEECYH 137
C CT+ + + + C CS L + R+ +C +C
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET:
PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A
1kfl_A* 1qr7_A*
Length = 350
Score = 28.0 bits (63), Expect = 3.8
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 109 VVCGPCS--DYLAPLEY 123
VV GPCS D +A EY
Sbjct: 56 VVIGPCSIHDPVAAKEY 72
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A
{Francisella tularensis}
Length = 346
Score = 28.0 bits (63), Expect = 3.8
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 109 VVCGPCS--DYLAPLEY 123
VV GPCS D A +EY
Sbjct: 53 VVVGPCSIHDPAAAIEY 69
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited;
beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP
G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB:
1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A
1ofq_A 1ofr_A* 1og0_A*
Length = 370
Score = 28.0 bits (63), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 109 VVCGPCS--DYLAPLEY 123
V+ GPCS D A EY
Sbjct: 71 VIVGPCSIHDLEAAQEY 87
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 26.2 bits (58), Expect = 4.3
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 82 SRVSMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEEC 135
R MC C V F A GK C C + +A + + + + CE C
Sbjct: 23 KRTPMCAHCNQVIRGPF----LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELC 78
Query: 136 YH 137
Y
Sbjct: 79 YE 80
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 27.9 bits (61), Expect = 4.8
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 87 CQRCTSVFTVTFRRHHCRACG---KVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEF 143
C C + + R C C + P E R C C YL Q +
Sbjct: 211 CSLCACEWH--YVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLR-AETCPSCQGYLKQFY 267
Query: 144 DDED 147
+ D
Sbjct: 268 LEFD 271
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics,
ring-finger, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
g.44.1.1
Length = 93
Score = 25.8 bits (56), Expect = 6.5
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 72 GKVAPLWIPDSRVSMCQRCTSVFTVTFRRHH---CRACGKVVCGPCSDY 117
G P + + C+ C +T C CG C PC +Y
Sbjct: 4 GSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY 52
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 27.2 bits (61), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 10/37 (27%)
Query: 103 CRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYL 139
C +CG+V+ Y A LE RN VC +C H++
Sbjct: 27 CDSCGQVL------YRAELE----RNLEVCPKCDHHM 53
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 25.1 bits (55), Expect = 8.2
Identities = 15/62 (24%), Positives = 17/62 (27%), Gaps = 8/62 (12%)
Query: 82 SRVSMCQRCTSVFTVTFRRHHCRACGKV------VCGPCSDYLAPLEYKKFRNFRVCEEC 135
S S C C V A +V VC C L + CE C
Sbjct: 3 SGSSGCGGCGE--DVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGC 60
Query: 136 YH 137
Y
Sbjct: 61 YV 62
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 24.8 bits (54), Expect = 9.5
Identities = 7/37 (18%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 78 WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPC 114
+ C C + C C V C C
Sbjct: 9 LEEYNGERFCYGCQGELKDQ-HVYVCAVCQNVFCVDC 44
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus,
protein transport, translocation, transport, transport
protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Length = 661
Score = 27.0 bits (59), Expect = 9.6
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 38 IDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGK 73
+DA+ AI L + LT+ ++
Sbjct: 323 MDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFAN 358
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.408
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,682,321
Number of extensions: 269974
Number of successful extensions: 1018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 227
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)