BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2209
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Ethanol Decreased 4 Protein
Length = 109
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 69 KKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG 128
K S + WK WFV+K++V+Y Y ASED+ AL S P+LG+ + + ++++ VFQL H+G
Sbjct: 18 KGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKG 77
Query: 129 QDPLVFGADNEQSYERWMKAMREATT 154
VF AD+ S +RW+ A +E T
Sbjct: 78 MVFYVFKADDAHSTQRWIDAFQEGTV 103
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 64 SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 118
+GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A+ DN
Sbjct: 25 AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 84
Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
K+ F+ +H G F A++ + E W++AM EA +
Sbjct: 85 KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 64 SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 118
+GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A+ DN
Sbjct: 14 AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 73
Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
K+ F+ +H G F A++ + E W++AM EA
Sbjct: 74 KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 65 GWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD--NFK 119
GWL+K+ WK+ WFVL D ++ Y+ ++ L SI + +++ L +D N K
Sbjct: 25 GWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRK 84
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
Y F+ H F D + E WMKAM +A +
Sbjct: 85 YAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALV 120
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 65 GWLHKK--SG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL--EALNEQDNFK 119
GWLHK+ SG R WKR WFVL ++ YK S + L S+ + Y + + +
Sbjct: 15 GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRR 74
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ F +H G V AD + W++A+ A+
Sbjct: 75 FTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 108
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 55 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIK--ALLSIPVLGYELE 110
++ SG GWL K+ +NW++ +FVL+ Q +Y YK ED K + +P +
Sbjct: 2 SSGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61
Query: 111 ALNEQDNFKYVFQL-------KHQGQDPLVFGADNEQSYERWMKAMR 150
A N ++ K+VF++ GQD V A ++ E W+K +R
Sbjct: 62 ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLR 108
>pdb|3CXB|B Chain B, Crystal Structure Of Sifa And Skip
Length = 112
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 65 GWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
G LH K+G +WK + VL + ++Y+Y D+ LLS+ + G + +
Sbjct: 4 GMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTT 63
Query: 119 --KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
+ FQ+ + L A++E WM+ + +A +
Sbjct: 64 DRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101
>pdb|3HW2|B Chain B, Crystal Structure Of The Sifa-skip(ph) Complex
Length = 105
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 65 GWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
G LH K+G +WK + VL + ++Y+Y D+ LLS+ + G + +
Sbjct: 6 GMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTT 65
Query: 119 --KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
+ FQ+ + L A++E WM+ + +A +
Sbjct: 66 DRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 103
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 7 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 121 VFQLKHQGQ 129
++ H+GQ
Sbjct: 67 LYNPSHKGQ 75
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 7 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 121 VFQLKHQGQ 129
++ H+GQ
Sbjct: 67 LYNPSHKGQ 75
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 121 VFQLKHQGQ 129
++ H+GQ
Sbjct: 277 LYNPSHKGQ 285
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 121 VFQLKHQGQ 129
++ H+GQ
Sbjct: 277 LYNPSHKGQ 285
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 65 GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNE-QDNFKY 120
GWL K GR WKR WF+L D +Y ++ + D + IP+ + E L+ + N
Sbjct: 9 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFE 68
Query: 121 VFQLKHQGQ 129
++ H+GQ
Sbjct: 69 LYNPSHKGQ 77
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 65 GWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFK 119
GWL K G + WKR WF+L D +Y ++ + D + IP+ + + + + N
Sbjct: 19 GWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCF 78
Query: 120 YVFQLKHQGQ 129
++ H+GQ
Sbjct: 79 ELYNPSHKGQ 88
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 55 TANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVL--GYELE 110
++ SG G++ KK R NW WFVLK ++ Y SED+K +L +E
Sbjct: 2 SSGSSGVLKQGYMMKKGHRRKNWTERWFVLKPNII-SYYVSEDLKDKKGDILLDENCCVE 60
Query: 111 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
+L ++D K +F +K + + +D ++ E W++A+ L
Sbjct: 61 SLPDKDGKKCLFLVKCFDKTFEISASDKKKKQE-WIQAIHSTIHL 104
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 65 GWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPV 104
GWL K G + WKR WF+L D +Y ++ + D + IP+
Sbjct: 15 GWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPL 57
>pdb|1WI1|A Chain A, Solution Structure Of The Ph Domain Of Human Calcium-
Dependent Activator Protein For Secretion (Caps)
Length = 126
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 55 TANDSGSQHSGWL---HKKSGRNWKRYWFVLKDQVMYKYKASE------DIKALLSIPVL 105
++ SG +HSG+L K + WK+ +FVL Y + + + LL +
Sbjct: 2 SSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLD-- 59
Query: 106 GYELEALNEQDNF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
GY ++ + Q + F +G D ++F +D+EQ W++AM AT S
Sbjct: 60 GYTVDYTDPQPGLEGGRAFFNAVKEG-DTVIFASDDEQDRILWVQAMYRATGQS 112
>pdb|3A8N|A Chain A, Crystal Structure Of The Tiam1 Phccex Domain
Length = 279
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 73 RNWKRYWFVLKDQVMYKYKASEDIKALL---SIP-----VLGYELEALNEQDNFKYVFQL 124
R WK YW LK ++ Y+ D ++ + S+P V ++A+ E +VF L
Sbjct: 37 RKWKHYWVSLKGCTLFFYET--DGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCL 94
Query: 125 KHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ D +F ++ E W+ A+ A
Sbjct: 95 SNSLGDAFLFQTTSQTELENWITAIHSAC 123
>pdb|2LKO|A Chain A, Structural Basis Of Phosphoinositide Binding To Kindlin-2
Pleckstrin Homology Domain In Regulating Integrin
Activation
Length = 138
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 73 RNWKRYWFVLKDQVMYKYKASEDIKALLS--IPVLGYELEA----LNEQDNFKYVFQLKH 126
+ +K+YW KD + YK+ E+ + + + G E+ ++ N K + +
Sbjct: 28 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA- 86
Query: 127 QGQDPLVFGADNEQSYERWMKAMREAT 153
+G + + DNE+ Y WM A R A+
Sbjct: 87 EGMNEIWLRCDNEKQYAHWMAACRLAS 113
>pdb|1V61|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Alpha-Pix
Length = 132
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 68 HKKSGRNWKRYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQDNFKYVFQL 124
H +RY F+L V+ AS + + IP+ G + L+E + +F++
Sbjct: 38 HGACEEKEERY-FLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEI 96
Query: 125 KHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ +V +N Q ++ WM+ + T
Sbjct: 97 TGSTVERIVVHCNNNQDFQEWMEQLNRLT 125
>pdb|4F7H|A Chain A, The Crystal Structure Of Kindlin-2 Pleckstrin Homology
Domain In Free Form
Length = 173
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 73 RNWKRYWFVLKDQVMYKYKASEDIKALLS--IPVLGYELEA----LNEQDNFKYVFQLKH 126
+ +K+YW KD + YK+ E+ + + + G E+ ++ N K + +
Sbjct: 64 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA- 122
Query: 127 QGQDPLVFGADNEQSYERWMKAMREAT 153
+G + + DNE+ Y WM A R A+
Sbjct: 123 EGMNEIWLRCDNEKQYAHWMAACRLAS 149
>pdb|3A8P|A Chain A, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|B Chain B, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|C Chain C, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|D Chain D, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8Q|A Chain A, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|B Chain B, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|C Chain C, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|D Chain D, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
Length = 263
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 73 RNWKRYWFVLKDQVMYKY----KASEDIKALLSIPVLGYE--LEALNEQDNFKYVFQLKH 126
R WK+YW LK + Y K S + + + + ++++ E ++VF L +
Sbjct: 37 RKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSN 96
Query: 127 QGQDPLVFGADNEQSYERWMKAMREAT 153
D +F A ++ E W+ A+ A
Sbjct: 97 SCGDVYLFQATSQTDLENWVTAIHSAC 123
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 65 GWLHKKSG-------RNWKRYWFVLK-DQVMYKYKASED 95
GWLH G RNWK+ WFVL+ ++MY SE+
Sbjct: 62 GWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEE 100
>pdb|2W2W|A Chain A, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|B Chain B, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|C Chain C, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|D Chain D, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|E Chain E, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|F Chain F, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|G Chain G, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|H Chain H, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|I Chain I, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|J Chain J, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|K Chain K, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2W|L Chain L, Plcg2 Split Pleckstrin Homology (Ph) Domain
pdb|2W2X|D Chain D, Complex Of Rac2 And Plcg2 Spph Domain
Length = 124
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 115 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
Q +F ++ + K QG P+ F D + W +++RE T
Sbjct: 80 QKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118
>pdb|2W2X|C Chain C, Complex Of Rac2 And Plcg2 Spph Domain
Length = 124
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 115 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
Q +F ++ + K QG P+ F D + W +++RE T
Sbjct: 80 QKSFVFILEPKQQGDPPVEFATDRVEELFEWFQSIREIT 118
>pdb|2K2J|A Chain A, Nmr Solution Structure Of The Split Ph Domain From
Phospholipase C Gamma 2
Length = 124
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 115 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
Q +F ++ + K QG P+ F D + W +++RE T
Sbjct: 80 QKSFVFILEPKQQGDPPVEFATDRVEELFEWFQSIREIT 118
>pdb|2YS3|A Chain A, Solution Structure Of The Ph Domain Of Kindlin-3 From
Human
Length = 137
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 73 RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQDNFKYVFQL---KHQ 127
+ ++++W V K+ + YK+ ++ + + + G E+ K+ +L +
Sbjct: 26 KGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPE 85
Query: 128 GQDPLVFGADNEQSYERWMKAMREAT 153
G + +EQ Y RWM R A+
Sbjct: 86 GMSEIYLRCQDEQQYARWMAGCRLAS 111
>pdb|1BTN|A Chain A, Structure Of The Binding Site For Inositol Phosphates In A
Ph Domain
pdb|1MPH|A Chain A, Pleckstrin Homology Domain From Mouse Beta-Spectrin, Nmr,
50 Structures
Length = 106
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 69 KKSGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYE--LEALNEQDNFKYVF 122
K S R+W + V+ +Q M YK A+ I +PV E E + K+VF
Sbjct: 17 KASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVF 76
Query: 123 QLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+L+ + +F A +++ W++A+ A
Sbjct: 77 KLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The
Kindlin-1 Pleckstrin Homology Domain
Length = 165
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 73 RNWKRYWFVLKDQVM--YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQL---KHQ 127
+ K+YWFV KD + +K K E + + + + G E+ K+ +L
Sbjct: 43 KACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVAD 102
Query: 128 GQDPLVFGADNEQSYERWMKAMREAT 153
G + + D+E Y RWM A A+
Sbjct: 103 GMNEVYLRCDHEDQYARWMAACILAS 128
>pdb|2J59|M Chain M, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|N Chain N, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|O Chain O, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|P Chain P, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|Q Chain Q, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|R Chain R, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 168
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 23/116 (19%)
Query: 59 SGSQHSGWLH---------KKSG---RNWKRYWFVLKDQVMYKYK-------ASEDIKAL 99
S + GWLH K+ G R WK+ + VL+ +Y YK SE+ +
Sbjct: 1 SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQP- 59
Query: 100 LSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
I V ++ + K VF+L + L F A++ W+K ++E++ L
Sbjct: 60 --ISVNACLIDISYSETKRKNVFRLTTSDCECL-FQAEDRDDMLAWIKTIQESSNL 112
>pdb|2DHJ|A Chain A, Solution Structure Of The Ph Domain Of Rho Gtpase
Activating Protein 21 From Human
Length = 125
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 65 GWLH---------KKSG---RNWKRYWFVLKDQVMYKYK-------ASEDIKALLSIPVL 105
GWLH K+ G R WK+ + VL+ +Y YK SE+ + I V
Sbjct: 13 GWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQP---ISVN 69
Query: 106 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
++ + K VF+L + L F A++ W+K ++E++ L
Sbjct: 70 ACLIDISYSETKRKNVFRLTTSDCECL-FQAEDRDDMLAWIKTIQESSNL 118
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin
Homology Domain-Containing Protein Family B Member 1
From Mouse
Length = 130
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 55 TANDSGSQHSGWLHKKSG--RNWKRYWFVL 82
++ SG GWL ++S R WKR WF L
Sbjct: 2 SSGSSGLVRGGWLWRQSSILRRWKRNWFAL 31
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 105 LGYELEALNEQDNFKYVFQLKHQGQDPL-VFGADNEQSYERWMKAMRE 151
+GY +E + +N + ++ G D L V+G ++S+E W+ +R+
Sbjct: 432 MGYVVEVIRGANNQR----IRDYGHDKLKVYGMGRDKSHEHWVSVIRQ 475
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 106 GYELEALNEQDNFKYVFQLKHQGQDPL-VFGADNEQSYERWMKAMRE 151
GY +E + +N + ++ G D L V+G ++S+E W+ +R+
Sbjct: 433 GYVVEVIRGANNQR----IRDYGHDKLKVYGXGRDKSHEHWVSVIRQ 475
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 64 SGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE---ALNE 114
+G+L K+ G W++ W L V Y Y + +D + + GY++ L +
Sbjct: 20 AGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRK 79
Query: 115 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR 150
F++ + F A + + E W++ ++
Sbjct: 80 DGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 115
>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain
Length = 113
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 65 GWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK--Y 120
G+L KK WK W VL + + YK D IP+ G L + QD K +
Sbjct: 9 GYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPC-QDFGKRMF 67
Query: 121 VFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
VF++ Q F A + + W++ + +A
Sbjct: 68 VFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,685,816
Number of Sequences: 62578
Number of extensions: 185869
Number of successful extensions: 486
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 46
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)