RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2209
(156 letters)
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 113 bits (285), Expect = 1e-33
Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 56 ANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
+ SGS SG+L++ G WK WFV+K++V+Y Y ASED+ AL S P+LG+ + +
Sbjct: 3 SGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVK 62
Query: 114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
++++ VFQL H+G VF AD+ S +RW+ A +E T
Sbjct: 63 DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV 103
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 97.3 bits (242), Expect = 3e-27
Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 55 TANDSGSQHSGWLHK-KSGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELE 110
++ SGS G L +SG W W + QV++ S+D + +IP+ +L
Sbjct: 2 SSGSSGSLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLS 61
Query: 111 ALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
+ ++ +V++L + A + + ++W++ + A
Sbjct: 62 VPDPEERLDSGHVWKL-QWAKQSWYLSASSAELQQQWLETLSTAAH 106
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 97.1 bits (242), Expect = 4e-27
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 55 TANDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA 111
++ ++ +GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A
Sbjct: 5 SSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAA 64
Query: 112 LNEQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ D + K+ F+ +H G F A++ + E W++AM EA
Sbjct: 65 VQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 94.9 bits (236), Expect = 3e-26
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 55 TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIK-ALLSIPVLGYELEALN 113
++ SG + S +L+ WK W ++D ++ Y+ K A + ++G E+
Sbjct: 2 SSGSSGLETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDP 61
Query: 114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
D+ Y F++ H+G++ A + + W+ + +
Sbjct: 62 SPDH-LYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 94.4 bits (235), Expect = 6e-26
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 57 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
++ +GWL K++ + W + WFVL D+ ++ YK ++ L SIP+L + + A+
Sbjct: 18 PNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQ 77
Query: 114 EQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
D + K+ F+ +H G F A++ + E W++AM EA +
Sbjct: 78 PSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 92.1 bits (229), Expect = 4e-25
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 63 HSGWLHKKSGR---NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF- 118
GWL+K+ WK+ WFVL D ++ Y+ ++ L SI + +++ L +D+
Sbjct: 23 RRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHIN 82
Query: 119 -KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
KY F+ H F D + E WMKAM +A +
Sbjct: 83 RKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALV 120
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 87.9 bits (218), Expect = 1e-23
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 64 SGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDN 117
G LH K+G +WK + VL + ++Y+Y D+ LLS+ + G + +
Sbjct: 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANT 62
Query: 118 F--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
+ FQ+ + L A++E WM+ + +A +
Sbjct: 63 TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 87.5 bits (217), Expect = 2e-23
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 58 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE 114
+ GWLHK+ R WKR WFVL ++ YK S + L S+ + Y +
Sbjct: 8 NLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGP 67
Query: 115 QD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
++ F +H G V AD + W++A+ A+
Sbjct: 68 GAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 109
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 82.0 bits (203), Expect = 3e-21
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 119
G+L KK WK W VL + + YK D IP+ G L +
Sbjct: 7 REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
+VF++ Q F A + + W++ + +A
Sbjct: 67 FVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIK 101
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 82.7 bits (204), Expect = 4e-21
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 63 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 116
+G+L K+ W++ W L V Y Y + +D + + GY++ N
Sbjct: 19 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 78
Query: 117 NF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
F++ + F A + + E W++ ++
Sbjct: 79 KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 117
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 81.7 bits (202), Expect = 4e-21
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 63 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 116
G+L KKS W++ W V+ + Y Y + + + + GY +
Sbjct: 5 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 64
Query: 117 ---NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ F+L Q + F A + W+ +
Sbjct: 65 RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 82.1 bits (202), Expect = 3e-20
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 10/133 (7%)
Query: 30 EMGTAGRRKPSKKYRKYVPQRLIEVTANDSGS-QHSGWLHKKSG------RNWKRYWFVL 82
+ A R + + A D +G+L K+ W++ W L
Sbjct: 74 TISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCAL 133
Query: 83 KDQVMYKYKASEDIKALLSIPVLGYELEALNEQD---NFKYVFQLKHQGQDPLVFGADNE 139
V Y Y + +D + + GY++ N F++ + F A +
Sbjct: 134 SKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASP 193
Query: 140 QSYERWMKAMREA 152
+ E W++ ++
Sbjct: 194 KDAEEWVQQLKFI 206
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 77.5 bits (191), Expect = 2e-19
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNF 118
GWL K+ +NW++ +FVL+ Q +Y YK ED K + + G ++ + N ++
Sbjct: 10 KMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG 69
Query: 119 KYVFQLKHQGQDPL-------VFGADNEQSYERWMKAMREAT 153
K+VF++ D V A ++ E W+K +R
Sbjct: 70 KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 75.6 bits (186), Expect = 2e-18
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
G L K+ +NWK F+L++ ++ Y + L +I + G + ++ N
Sbjct: 20 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79
Query: 119 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ +F++ + A + W+KA++ A
Sbjct: 80 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 73.4 bits (180), Expect = 1e-17
Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELEALNE--- 114
G+L K+ +NWK FVL+ + Y + E+ + + + G + AL +
Sbjct: 20 KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 79
Query: 115 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
+ +F++ + A ++ W++A+++ T+
Sbjct: 80 PTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 72.0 bits (177), Expect = 2e-17
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
G L K+ +NWK F+L++ ++ Y + L +I + G + ++ N
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68
Query: 119 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ +F++ + A + W+KA++ A+
Sbjct: 69 RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 72.4 bits (178), Expect = 2e-17
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 58 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 115
S G+L K+ G + WK WF L + +K + + + + +
Sbjct: 15 PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS 74
Query: 116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
F L + A + W+K +R
Sbjct: 75 QERVNCFCLVFPFRT-FYLCAKTGVEADEWIKILRWK 110
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 72.5 bits (178), Expect = 2e-17
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 63 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY---ELEALNEQDN 117
+G+ K+ NWKR +F L + + +K+ + + L IP+ + ++
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 75
Query: 118 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+F++ + AD+ + W+KA+ A
Sbjct: 76 RDNLFEIVTTSR-TFYVQADSPEEMHSWIKAVSGA 109
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 72.1 bits (177), Expect = 2e-17
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 55 TANDSGSQHSGWLHKKSGR----NWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYE 108
++ SG + G+L K G+ WK WF ++ +Y + ++D L SI +
Sbjct: 2 SSGSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAV 61
Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ + D + +F++K + + A +Q+ W++ ++
Sbjct: 62 FDC--KADAEEGIFEIKTPSRV-ITLKAATKQAMLYWLQQLQMK 102
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 73.1 bits (179), Expect = 2e-17
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 58 DSGSQHSGWLHKKSG--------RNWKRYWFVLK-----DQVMYKYKASEDIKALLSIPV 104
G GWL+K + R++KR +F L + YK + K
Sbjct: 15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIF 74
Query: 105 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
L + + ++ F+LK Q + + AD+E E W+ + +
Sbjct: 75 LDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 74.3 bits (182), Expect = 4e-17
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 63 HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 115
GWLH G RNWK+ WFVL+ + ++ + K ++ V + + +
Sbjct: 60 KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSA--KEIIDN 117
Query: 116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
N + + A++ + +W + +
Sbjct: 118 TNKENGIDIIM-ADRTFHLIAESPEDASQWFSVLSQV 153
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 72.5 bits (177), Expect = 4e-17
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY-ELEALNEQDNFK 119
G+L K R ++ YW L+ ++ Y + I + + ++ L N +
Sbjct: 20 FEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNC 79
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
F L ++ + +N +S E W + T LS
Sbjct: 80 AKFTLVLPKEE-VQLKTENTESGEEWRGFILTVTELS 115
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 70.4 bits (172), Expect = 1e-16
Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNEQD- 116
SG+L ++S +++ + ++VL ++++K ++ K ++S+ + + + ++
Sbjct: 8 KSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS 67
Query: 117 ---------NFKYVFQLKHQG----QDPLVFGADNEQSYERWMKAMREATTLS 156
+ K+V K G VF AD+ +S W ++ T+ S
Sbjct: 68 TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS 120
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 69.0 bits (169), Expect = 3e-16
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 63 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 119
SGWL K S R +++ W + Y +++ + IP+ +
Sbjct: 10 KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG----D 65
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
F++ + VF + E+ W+ + A
Sbjct: 66 NKFEVVTTQRT-FVFRVEKEEERNDWISILLNA 97
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 69.2 bits (169), Expect = 4e-16
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 58 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYEL- 109
SG +HSG+L + WK+ +FVL Y + + + + + GY +
Sbjct: 5 SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVD 64
Query: 110 --EALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ + + F +G D ++F +D+EQ W++AM AT
Sbjct: 65 YTDPQPGLEGGRAFFNAVKEG-DTVIFASDDEQDRILWVQAMYRAT 109
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 67.4 bits (165), Expect = 1e-15
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 63 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 119
G++ KK R NW WFVLK ++ Y + + I + E+L ++D K
Sbjct: 10 KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKK 69
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+F +K + A +++ + W++A+
Sbjct: 70 CLFLVKCFDKT-FEISASDKKKKQEWIQAIHST 101
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 67.3 bits (164), Expect = 2e-15
Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 57 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEA 111
D ++ G+L + + R +F+L Q + Y + A+ + V +L
Sbjct: 11 VDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTY 70
Query: 112 L--------NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ ++ + F + + A++++ + W++A+ +A+
Sbjct: 71 ISKVSIATPKQKPKTPFCFVI-NALSQRYFLQANDQKDLKDWVEALNQAS 119
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 66.2 bits (161), Expect = 5e-15
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 24/113 (21%)
Query: 63 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 120
GWL K GR WKR WF+L D +Y ++ + D + IP+ + + +
Sbjct: 7 REGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRK-PN 65
Query: 121 VFQLKHQGQDPL---------------------VFGADNEQSYERWMKAMREA 152
F+L + A + + E WMK+++ +
Sbjct: 66 CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 65.7 bits (160), Expect = 7e-15
Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 56 ANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKAL------ 99
+G H G++ +K S R+W + + K + YK + K+
Sbjct: 3 GTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFR 62
Query: 100 --LSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
S + +E ++ K+V ++K + A ++ +W+ +++ + +
Sbjct: 63 GEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDST 121
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 65.7 bits (160), Expect = 9e-15
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 64 SGWLH--------KKSGRNWKRYWFVLKDQVMYKYK-----------ASEDIKALLSIPV 104
SG L+ +K +NW W VL + Y+ + S+ +
Sbjct: 15 SGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDL 74
Query: 105 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
G L + + V ++ + +D+E W +A+R
Sbjct: 75 RGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTV 122
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 65.8 bits (160), Expect = 1e-14
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 64 SGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQD 116
L + ++++W V K+ + YK+ ++ + + + G E+
Sbjct: 12 KDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVS 71
Query: 117 NFKYVFQL---KHQGQDPLVFGADNEQSYERWMKAMREAT 153
K+ +L +G + +EQ Y RWM R A+
Sbjct: 72 GQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 64.9 bits (158), Expect = 1e-14
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 57 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
+ GS+ G+L KKS + W+R +K+ ++ A+ + + + +L +++
Sbjct: 6 SGYGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKPNA 64
Query: 114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
E K F L F A++EQ Y W+ + +
Sbjct: 65 ED---KKSFDLISH-NRTYHFQAEDEQDYVAWISVLTNS 99
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 66.3 bits (161), Expect = 1e-14
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 59 SGSQHSGWLHKK------------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSI 102
S + GWLH + S R WK+ + VL+ +Y YK + + I
Sbjct: 1 SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60
Query: 103 PVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
V ++ + K VF+L + +F A++ W+K ++E++ L+
Sbjct: 61 SVNACLIDISYSETKRKNVFRLTTSDCE-CLFQAEDRDDMLAWIKTIQESSNLN 113
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 65.0 bits (158), Expect = 2e-14
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 63 HSGWLHKKSG--RNWKRYWFVLKDQVM---YKYKASEDIKALLSIPVLGYELEALNE--- 114
GWL ++S R WKR WF L Y + ++D + + I +++ E
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69
Query: 115 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
+ + + + L A+ W A+ EA +
Sbjct: 70 VQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP 116
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 63.7 bits (155), Expect = 4e-14
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 22/113 (19%)
Query: 62 QHSGWLHKK---------SGRNWKRYWFVLKDQVMYKYK------------ASEDIKALL 100
+G LH+ ++W W VL+ V+ +K S+
Sbjct: 9 DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY 68
Query: 101 SIPVLGYELE-ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
++ + G L A ++ + K V +L+ + + D+E W KA+ +
Sbjct: 69 TVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 63.6 bits (155), Expect = 5e-14
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 14/110 (12%)
Query: 55 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPV----- 104
++ SG + G L+KK + WK WFVL Q+ Y Y D + I +
Sbjct: 2 SSGSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRY-YDHRMDTECKGVIDLAEVEA 60
Query: 105 --LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
G + + K F +K + F A + S ++W+ ++
Sbjct: 61 VAPGTPTIGAPKTVDEKAFFDVKTTRRV-YNFCAQDVPSAQQWVDRIQSC 109
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 63.4 bits (154), Expect = 6e-14
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 63 HSGWLHKKSG--RNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLGYELE--------- 110
SGWL ++S + WK+ WF L D + Y + + +
Sbjct: 7 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66
Query: 111 -ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
+ + + Q+ + + A++ W ++++ T
Sbjct: 67 TQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 63.6 bits (154), Expect = 6e-14
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 25/124 (20%)
Query: 55 TANDSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
++ SG + WL + ++W + W VLK V+ YK ++ + + ++ + E+
Sbjct: 2 SSGSSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP 61
Query: 114 EQDNFKYVFQLKHQGQDP-----------------------LVFGADNEQSYERWMKAMR 150
+ + + F+L H + L+ A +E WM A+
Sbjct: 62 SKKD-GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120
Query: 151 EATT 154
A
Sbjct: 121 LALK 124
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 65.7 bits (159), Expect = 1e-13
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)
Query: 62 QHSGWLHKKSG--------------RNWKRYWFVLKDQVMYKYK------ASEDIKALLS 101
+ +G L K+ R WK YW LK ++ Y+ + +
Sbjct: 12 RKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHA 71
Query: 102 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
+ V ++A+ E +VF L + D +F ++ E W+ A+ A +
Sbjct: 72 VWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAA 126
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 62.6 bits (152), Expect = 1e-13
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 55 TANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA 111
+ +D GWLHK+ + W+ +F+LK D YK P+ + +
Sbjct: 2 SMSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQ 61
Query: 112 ---LNEQDNFKYVFQLKHQGQ---DPLVFGADNEQSYERWMKAMREA 152
+ + F ++ F + + E W A++
Sbjct: 62 CQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 108
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 62.2 bits (151), Expect = 2e-13
Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 55 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVM----YKYKASEDIKALLSIPVLGYE 108
++ SG G+L K + W+ +FVL ++ + + S + K ++ + G
Sbjct: 2 SSGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAV 61
Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ +E + F + + A + + + W+ ++
Sbjct: 62 ISPSDEDSH---TFTVNAASGEQYKLRATDAKERQHWVSRLQIC 102
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 63.2 bits (153), Expect = 2e-13
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 73 RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLK---HQ 127
+ +K+YW KD + YK+ E+ + + G E+ K+ +L +
Sbjct: 64 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAE 123
Query: 128 GQDPLVFGADNEQSYERWMKAMREAT 153
G + + DNE+ Y WM A R A+
Sbjct: 124 GMNEIWLRCDNEKQYAHWMAACRLAS 149
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 61.9 bits (150), Expect = 3e-13
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 16/114 (14%)
Query: 59 SGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPV 104
SG Q G L +K + R+W+ + VL+ + YK AS + +PV
Sbjct: 6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65
Query: 105 LGYELEALNEQDNFK--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
+ D K +VF+L Q +F A +E W++ + A
Sbjct: 66 SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 59.7 bits (144), Expect = 2e-12
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 64 SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNF 118
GWL + K YWFVL + + YK E+ + + V +L + + +
Sbjct: 15 KGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSS 74
Query: 119 KYVFQLKHQGQ-------DPLVFGADNEQSYERWMKAMREA 152
K++F L + Q L + ++ + W + A
Sbjct: 75 KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 59.3 bits (143), Expect = 3e-12
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 30/125 (24%)
Query: 58 DSGSQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIK---ALLSIPVLGYEL- 109
+S + G+L W R W VL + + +D K + I +
Sbjct: 2 NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSR 61
Query: 110 ---EALNEQDNFKYVFQLK-------------------HQGQDPLVFGADNEQSYERWMK 147
A E + F+L AD ++ + WM+
Sbjct: 62 QIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQ 121
Query: 148 AMREA 152
+ +
Sbjct: 122 KLNQV 126
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 58.9 bits (142), Expect = 3e-12
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 64 SGWLHKK---------SGRNWKRYWFVLKDQVMYKYKASED---------IKALLSIPVL 105
G L +K + +W RYW VL + Y A + ++
Sbjct: 4 EGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIV 63
Query: 106 GYELEALNEQDNFKYVFQLKH-QGQDPLVFGADNEQSYERWMKAMREATT 154
G+ ++ ++ ++ +FQL + + F + W K + +A
Sbjct: 64 GWMVQLPDDPEH-PDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK 112
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 57.9 bits (140), Expect = 4e-12
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 64 SGWLHKKSG--RNWKRYWFVLKDQVMY--KYKASEDIKALLSIPVLGYELEALNEQDNFK 119
G L+K + W+ WFVL + ++ + + SI + E++ + +
Sbjct: 2 EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTR- 60
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+L G+ A N +RW+ A+ +
Sbjct: 61 --MELIIPGEQHFYMKAVNAAERQRWLVALGSS 91
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 60.4 bits (145), Expect = 7e-12
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 62 QHSGWLHKK--------------SGRNWKRYWFVLKDQVMYKYKASEDIKALLS------ 101
+ +GWL K + R WK+YW LK + Y+ +
Sbjct: 12 RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71
Query: 102 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ ++++ E ++VF L + D +F A ++ E W+ A+ A
Sbjct: 72 LFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 56.5 bits (136), Expect = 2e-11
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 65 GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLGYE 108
G+L++K S R+W + V+ +Q M YK ++ + + +
Sbjct: 3 GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62
Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
E + K+VF+L+ + +F A +++ W++A+ A
Sbjct: 63 CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 55.9 bits (135), Expect = 2e-11
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 64 SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 121
G L K + W+ W VLK+ + Y SED + + D +
Sbjct: 4 CGVLSKWTNYIHGWQDRWVVLKNNALS-YYKSEDETEYGCRGSICLSKAVITPHDFDECR 62
Query: 122 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
F + A + ++W+ A+ + T
Sbjct: 63 FDISVNDSV-WYLRAQDPDHRQQWIDAIEQHKT 94
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 53.6 bits (128), Expect = 7e-10
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 63 HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALL-SIP------VLGYE 108
L K+S N+K FVL ++ Y+ + K I V +
Sbjct: 17 LEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVK 76
Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
+ KY FQ+ H + L A + QS + W+K ++E
Sbjct: 77 NDDGVIPCQNKYPFQVVHD-ANTLYIFAPSPQSRDLWVKKLKEEI 120
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 53.1 bits (126), Expect = 3e-09
Identities = 18/158 (11%), Positives = 58/158 (36%), Gaps = 8/158 (5%)
Query: 1 MFERIKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSG 60
+ E+++ ++ T + + + N +
Sbjct: 218 LNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNRNL 277
Query: 61 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 115
++ +G+L+ ++ W R ++ + + D+ L++ + + A++ +
Sbjct: 278 TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDCE 336
Query: 116 DNFKYVFQLK-HQGQDPLVFGADNEQSYERWMKAMREA 152
D +Y FQ+ G+ + A++++ +E W+ +
Sbjct: 337 DR-RYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 373
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 52.4 bits (125), Expect = 7e-09
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 63 HSGWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPV----LGYELEALN-- 113
G++ K + +++ WF + D+ + +K D A + + GY +
Sbjct: 271 KEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPP 330
Query: 114 --EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ ++ + + + +F + E W+ A ++A
Sbjct: 331 STQGHHWPHGITIVTPDRK-FLFACETESDQREWVAAFQKA 370
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 49.9 bits (119), Expect = 9e-09
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 63 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQDNFK 119
+ + + +F+L V+ AS + + IP+ G + L+E +
Sbjct: 32 SQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSD 91
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
+F++ + +V +N Q ++ WM+ + T
Sbjct: 92 CMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 50.6 bits (120), Expect = 2e-08
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 55 TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASEDIKALLSIPVLGY 107
+ S + G+L K ++ + +FVL+ + Y+ + + S P
Sbjct: 4 SDGFSDVRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSI 61
Query: 108 ELE-----ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
LE K++ L + + AD+E + W +A+ +
Sbjct: 62 PLESCFNINKRADSKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQL 110
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 48.3 bits (114), Expect = 2e-07
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 51 LIEVTANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMY-----KYKASEDIKALLSIP 103
L + S + G+LH K +WK+ + L+ +Y A ++ L +
Sbjct: 122 LQNFLNSSSSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLE 181
Query: 104 VLG-YELEAL--NEQDNFKYVFQLKHQG-----QDPLVFGADNEQSYERWMKAMREA 152
+ L A + +K ++ + A++EQ+ WM A R
Sbjct: 182 DSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLL 238
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 45.6 bits (107), Expect = 3e-07
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 66 WLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLS---------IPVLGYELEALNEQD 116
++ + W R++ + D + E + + + Y + +
Sbjct: 19 YMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGK 78
Query: 117 NFK-YVFQLKHQGQD--PLVFGADNEQSYERWMKAMREAT 153
N K +VF L+ + Q P+ F D + W +++RE T
Sbjct: 79 NQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 45.7 bits (107), Expect = 6e-07
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 38/127 (29%)
Query: 64 SGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASED----IKALLSIPV-------- 104
K+S N+K+ F+L + Y+ + SI V
Sbjct: 6 ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65
Query: 105 ------------------LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 146
E+E ++ + F Y FQ+ + + PL + E+ +RW+
Sbjct: 66 VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVY-DEGPLYVFSPTEELRKRWI 124
Query: 147 KAMREAT 153
++
Sbjct: 125 HQLKNVI 131
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 44.1 bits (103), Expect = 2e-06
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 27/116 (23%)
Query: 64 SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASED-----------------IKALLSI 102
+L K+SG WK+ + L Y S + +K
Sbjct: 7 QSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKR 66
Query: 103 PVLGYELEA------LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
P + + + F + F A + + + W++A+
Sbjct: 67 PPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQ 122
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 42.2 bits (99), Expect = 2e-05
Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 17/169 (10%)
Query: 3 ERIKAVANV--EDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSG 60
+ V + + + + S + + K + Q+ I+
Sbjct: 181 TALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDI 240
Query: 61 SQHSGWLHK-----KSGRNWKRYWFVLKDQVMY------KYKASEDIKALLS----IPVL 105
Q + G +R+ F+ ++ + + A +
Sbjct: 241 GQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMR 300
Query: 106 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
++ ++ + +K+ F++ + ++ ++F A + + WM A+
Sbjct: 301 KVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 349
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 41.6 bits (98), Expect = 4e-05
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 56 ANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA- 111
+D GWLHK+ + W+ +F+LK D YK P+ + +
Sbjct: 1 GSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQC 60
Query: 112 --LNEQDNFKYVF---QLKHQGQDPLVFGADNEQSYERWMKAMRE 151
+ + F L+ F + + E W A++
Sbjct: 61 QLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQT 105
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 38.9 bits (90), Expect = 1e-04
Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 61 SQHSGWLH--KKSGR---NWKRYWFVLKDQVMYKYKASEDIKALLSIPVL----GYELEA 111
S+ GWL ++ W + + ++ + + Y + +D + VL + +
Sbjct: 1 SRLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRP 60
Query: 112 LNEQD-------NFKYVFQLKHQGQDP-----LVFGADNEQSYERWMKAMREA 152
+ + D +FQ+ + + L+ A++ + ++W+ + +
Sbjct: 61 VTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 36.0 bits (83), Expect = 0.001
Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 63 HSGWLHKKSGRNWK----RYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQ 115
++G L + + + F++ D ++ + + P+ + + +
Sbjct: 10 YNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDN 69
Query: 116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
K +F+L + +F A+N + W++ + E
Sbjct: 70 PPMKDMFKLLM-FPESRIFQAENAKIKREWLEVLEET 105
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 35.2 bits (80), Expect = 0.003
Identities = 12/109 (11%), Positives = 29/109 (26%), Gaps = 19/109 (17%)
Query: 65 GWLHKKSG----------RNWKRYWFVLK------DQVMYKYKASEDIKALLSIP---VL 105
G L W++ +L+ + + + + +SIP ++
Sbjct: 22 GALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAII 81
Query: 106 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
E F LK + + + W+ ++
Sbjct: 82 EVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD 130
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 34.8 bits (79), Expect = 0.005
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 64 SGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASEDI------KALLSIPVLGYELE 110
G + + G+ WK W VL+ +M YK + ++ L++ + LE
Sbjct: 12 EGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDI-CGLE 70
Query: 111 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ + + ++ G D+ ++ W +R A
Sbjct: 71 PALPYEGLAHTLAIICL-SQAVMLGFDSHEAMCAWDTRIRYA 111
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 35.0 bits (80), Expect = 0.007
Identities = 22/183 (12%), Positives = 41/183 (22%), Gaps = 35/183 (19%)
Query: 5 IKAVANVEDNHQVTNMMDIIRS-------------NFKEMGTAGRRKPSKKYRKYVPQRL 51
+ + +V + R + + RR R+ L
Sbjct: 340 GQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPML 399
Query: 52 IEVTANDSGS---QHSGWLHKKSGRNWK--RYWFVLKDQVMY------KYKASEDIKALL 100
E D H G L + ++ + +L D ++ + + L
Sbjct: 400 SEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLT 459
Query: 101 SIPVLGYELEALN-----------EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAM 149
P L + YV Q A + W +
Sbjct: 460 PTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALI 519
Query: 150 REA 152
E
Sbjct: 520 TET 522
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 34.5 bits (79), Expect = 0.008
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 63 HSGWLHKKSGRNWK---RYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQD 116
++G + + R +F+ Q++ K L I + YE+ + +
Sbjct: 259 YTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 318
Query: 117 N------FKYVFQLKH-QGQDPLVFGADNEQSYERWMKAMREA 152
+ K F+L + + ++ +F A + RW++A RE
Sbjct: 319 DDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREE 361
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 34.1 bits (78), Expect = 0.011
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 19/109 (17%)
Query: 63 HSGWLHKKSGRNWK--RYWFVLKDQVMY------KYKASEDIKALLSIPVLGYELEALN- 113
H G L + ++ + +L D ++ + + L P L +
Sbjct: 261 HEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 320
Query: 114 ----------EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
YV Q A + W + E
Sbjct: 321 LTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITET 369
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 34.1 bits (78), Expect = 0.013
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 19/109 (17%)
Query: 63 HSGWLHKKSGRNWK--RYWFVLKDQVMY------KYKASEDIKALLS-----------IP 103
H G L K R+ Y +L+D ++ + K L S I
Sbjct: 259 HEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIK 318
Query: 104 VLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
+ + + + +V + G A W +
Sbjct: 319 LSTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRM 367
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 33.1 bits (75), Expect = 0.014
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 28/123 (22%)
Query: 55 TANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLG 106
++ SG GW+ + R KR+++ L + + ++ K IP +
Sbjct: 2 SSGSSGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISS 61
Query: 107 YELEALNEQDNFKYVFQLKHQ------GQDPLV-----------FGADNEQSYERWMKAM 149
Q + + F++ G++ G D QS W KA+
Sbjct: 62 PRDFTNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQS---WEKAI 118
Query: 150 REA 152
R+A
Sbjct: 119 RQA 121
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 125
Score = 31.9 bits (72), Expect = 0.029
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 18/107 (16%)
Query: 64 SGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLGYELEALNEQ 115
GW+ S + KR+++ L + + ++ + + IP V + +L
Sbjct: 11 EGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPP 70
Query: 116 DNFKYVFQLK----------HQGQDPLVFGADNEQSYERWMKAMREA 152
+ F++ G P ++ W A+R+A
Sbjct: 71 GTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA 117
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 32.8 bits (75), Expect = 0.031
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 25/113 (22%)
Query: 63 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLS-----IPVLGYELEALNEQD- 116
G L G K + F+ ++ ++ + + + IPV LE L + +
Sbjct: 234 CHGELKNNRGV--KLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEV 291
Query: 117 --------------NFKYVFQLKH---QGQDPLVFGADNEQSYERWMKAMREA 152
K F++ A++ + ++W+ +R+A
Sbjct: 292 RLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQA 344
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.036
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 50/148 (33%)
Query: 38 KPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIK 97
K K+ +P +E+ LH+ + D Y + D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYA---LHRS-----------IVDH--YNIPKTFDSD 462
Query: 98 ALLSIPV-------LGYELEALN---EQDNFKYVFQ--------LKHQGQDPLVFGA--- 136
L+ + +G+ L+ + F+ VF ++H G+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 137 -------------DNEQSYERWMKAMRE 151
DN+ YER + A+ +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 26.4 bits (57), Expect = 5.3
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 20 MMDIIRSNFKEMGTAGR---RKPSKKYRKYVPQRLIEVTANDS 59
+ +++R N+K + + + R+PS R Y+ QR + ND+
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDN 123
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 31.6 bits (71), Expect = 0.049
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 24/109 (22%)
Query: 63 HSGWLHKKS----GRNWKRYWFVLKDQVMY------KYKASEDIKALLS----------I 102
G+L+ + G+ W+R+ L + E + + +
Sbjct: 14 KQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCL 73
Query: 103 PVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 151
V EA + +D F L+ + + + A + + W++A+
Sbjct: 74 RVAEAGGEASSPRD--TSAFFLETK-ERLYLLAAPAAERGD-WVQAICL 118
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 31.6 bits (71), Expect = 0.060
Identities = 9/98 (9%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 63 HSGWLHKKSGRNWK--RYWFVLKDQVMY------KYKASEDIKALLSIPVLGYELEALNE 114
G + K+ +L D +++ KY + + I + + +
Sbjct: 73 RDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAH 132
Query: 115 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
++ ++ + + + A +++ W++ +++
Sbjct: 133 EEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDT 170
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 31.0 bits (70), Expect = 0.12
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 20/110 (18%)
Query: 63 HSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLS-----------------IP 103
H G L + ++ + +L+D ++ K E + +
Sbjct: 297 HEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLK 356
Query: 104 VLGYELEALNEQDNFKYVFQLKHQGQDP-LVFGADNEQSYERWMKAMREA 152
+ + ++ ++ G A WM+ + EA
Sbjct: 357 LNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEA 406
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 30.2 bits (67), Expect = 0.20
Identities = 10/71 (14%), Positives = 24/71 (33%)
Query: 54 VTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
++ + + + K+Y VL V Y+ + E+ +++ L
Sbjct: 119 LSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRK 178
Query: 114 EQDNFKYVFQL 124
Q Y ++
Sbjct: 179 LQPAAMYEIKV 189
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 29.6 bits (66), Expect = 0.39
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 53 EVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE 110
++T GWL K GR WKR WF+L D +Y ++ + D + IP+ +
Sbjct: 205 DLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR 264
Query: 111 ALNEQDNFKYVFQLKHQGQDP---------------------LVFGADNEQSYERWMKAM 149
+ E F+L + A + + E WMK++
Sbjct: 265 EV-EDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 323
Query: 150 REATTLS 156
+ + +
Sbjct: 324 KASISRD 330
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 29.8 bits (66), Expect = 0.42
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 63 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA----------- 111
G L + G +R+ F+ ++ K++ L Y L+
Sbjct: 446 MEGTL-TRVGAKHERHIFLFDGLMICC-KSNHGQPRLPGASNAEYRLKEKFFMRKVQIND 503
Query: 112 LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 151
++ + +K+ F++ + ++ ++F A + + WM A+
Sbjct: 504 KDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALIS 543
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 29.0 bits (65), Expect = 0.56
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 20/110 (18%)
Query: 63 HSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA--------- 111
H G L + ++ + +L+D ++ K E + ++
Sbjct: 255 HEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLK 314
Query: 112 -----LNEQDNFKYVFQLKH----QGQDPLVFGADNEQSYERWMKAMREA 152
+ K F + A WM+ + EA
Sbjct: 315 LNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEA 364
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 28.3 bits (62), Expect = 0.84
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 36 RRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED 95
++ + ++V LI G + K+ G +R +L + Y +
Sbjct: 36 KQAGGNPWHQFVENNLIL---------KMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVN 86
Query: 96 IKALLSIP 103
IP
Sbjct: 87 KVLKGEIP 94
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP:
b.55.1.1
Length = 150
Score = 28.1 bits (62), Expect = 0.88
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 101 SIPVLGYELEALNEQDNFK-YVFQLKH--QGQDPLVFGADNEQSYERWMKAMREAT 153
+ V ++ E N + +VF + Q L AD+++ + W+K +RE
Sbjct: 92 VLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 147
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 26.3 bits (59), Expect = 5.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 21 MDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLI 52
MDI GTA KPS++ P RLI
Sbjct: 45 MDI--------GTA---KPSRELLARYPHRLI 65
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 24.8 bits (54), Expect = 6.7
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 13/58 (22%)
Query: 36 RRKPSKKYR---KYVPQR----------LIEVTANDSGSQHSGWLHKKSGRNWKRYWF 80
R + + Y PQ I ++ + S GW++ S
Sbjct: 12 RFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLL 69
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 25.9 bits (58), Expect = 7.0
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 21 MDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLI 52
MDI GTA KP+ + P RL+
Sbjct: 50 MDI--------GTA---KPNAEELLAAPHRLL 70
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 25.0 bits (54), Expect = 9.4
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 14/75 (18%)
Query: 83 KDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDP-----LVFGAD 137
K+ V Y ++ S + G ++ L E + +L + F A
Sbjct: 55 KNSVTYSFRQS--------FSLYGMQVL-LFENQYYPNGIRLTSSVPGADIKVLINFNAP 105
Query: 138 NEQSYERWMKAMREA 152
N Q +++ +RE+
Sbjct: 106 NPQDRKKFTDDLRES 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.390
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,371,777
Number of extensions: 126769
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 92
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)