BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy221
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 70/79 (88%), Gaps = 1/79 (1%)
Query: 52 PEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
PE P+CGFSNAVVQILR+H V Y +++VL D +R GIK+Y++WPTIPQV++NGEFVGG
Sbjct: 30 PEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89
Query: 111 CDILLKLHQSGELVEQLEK 129
CDILL++HQ+G+LVE+L+K
Sbjct: 90 CDILLQMHQNGDLVEELKK 108
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 62/76 (81%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
P+CGFS VVQIL+ + P++S ++L++E +R G+KEY+SWPT PQ++I+GEF GGCDI
Sbjct: 31 PQCGFSQTVVQILKSLNAPFESVNILENELLRQGLKEYSSWPTFPQLYIDGEFFGGCDIT 90
Query: 115 LKLHQSGELVEQLEKG 130
++ ++SGEL EQ+EK
Sbjct: 91 VEAYKSGELQEQVEKA 106
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 60/76 (78%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
P CGFSN VVQIL+ +VP++ ++L++E +R G+KEY++WPT PQ++I GEF GGCDI
Sbjct: 31 PMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90
Query: 115 LKLHQSGELVEQLEKG 130
L+ ++GEL E++EK
Sbjct: 91 LEAFKTGELQEEVEKA 106
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 28 STDVQKSIDEMXXXXXXXXXXXXXPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDES 84
ST+++K+I++ PE P+CGFS A + +L V + +++VL+D
Sbjct: 2 STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPE 61
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKG 130
+R GIKE++ WPTIPQ+++N EF+GGCD++ + +SGEL + LE+
Sbjct: 62 LREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEA 107
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 52 PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
P+ PRCGFS +V+IL H++ + S D+ DE +R G+K Y+SWPT PQ++++GE +GG
Sbjct: 26 PQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGL 85
Query: 112 DILLKLHQSGEL 123
DI+ +L S EL
Sbjct: 86 DIIKELEASEEL 97
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 52/69 (75%)
Query: 56 RCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILL 115
+CGFS +++IL V Y++ D+L+DE +R G+K Y++WPT PQ+++ GE VGG DI+
Sbjct: 31 KCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVK 90
Query: 116 KLHQSGELV 124
+L ++GEL+
Sbjct: 91 ELKENGELL 99
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 51/69 (73%)
Query: 56 RCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILL 115
+CGFS +++IL V Y++ D+L+DE +R G+K +++WPT PQ+++ G+ VGG DI+
Sbjct: 29 KCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVK 88
Query: 116 KLHQSGELV 124
+L +GEL+
Sbjct: 89 ELKDNGELL 97
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 52 PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
P+ P CGFS VQ L + D+L++ IR + +Y +WPT PQ++++GE VGGC
Sbjct: 25 PKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGC 84
Query: 112 DILLKLHQSGELVEQLEKGDQKRK 135
DI+++++Q GEL + +++ K K
Sbjct: 85 DIVIEMYQRGELQQLIKETAAKYK 108
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 52 PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
P+ P CGFS VQ L + D+L++ IR + +Y +WPT PQ++++GE VGGC
Sbjct: 45 PKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGC 104
Query: 112 DILLKLHQSGELVEQLEKGDQKRK 135
DI+++++Q GEL + +++ K K
Sbjct: 105 DIVIEMYQRGELQQLIKETAAKYK 128
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 57 CGFSNAVVQILRMHDVPYD--SHDVLKDES-IRNGIKEYTSWPTIPQVFINGEFVGGCDI 113
CG+ N V Q+L Y D L D S +++ + +T T+P VFI G+ +GGCD
Sbjct: 30 CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDT 89
Query: 114 LLKLHQSGELVEQLE 128
+++ HQ EL+ L+
Sbjct: 90 VVEKHQRNELLPLLQ 104
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 57 CGFSNAVVQILRMHDVPYD--SHDVLKDES-IRNGIKEYTSWPTIPQVFINGEFVGGCDI 113
CG+ N V Q+L Y D L D S +++ + +T T+P VFI G+ +GGCD
Sbjct: 31 CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDT 90
Query: 114 LLKLHQSGELVEQLE 128
+++ HQ EL+ L+
Sbjct: 91 VVEKHQRNELLPLLQ 105
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 52 PEAPRCGFSNAVVQ-------ILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN 104
P P C + ++ +L D+ +H I++ +++ T T+P+VFI
Sbjct: 21 PTCPYCRRAQEILSQLPIKQGLLEFVDITATNHT----NEIQDYLQQLTGARTVPRVFIG 76
Query: 105 GEFVGGCDILLKLHQSGELVEQLEK 129
+ +GGC L+ L QSGEL+ +L++
Sbjct: 77 KDCIGGCSDLVSLQQSGELLTRLKQ 101
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 57 CGFSNAVVQILRMHDVPYDSHDVLKDE------SIRNGIKEYTSWPTIPQVFINGEFVGG 110
C +S+ V + + +V D V DE I+ ++ T T+P VFI G+ +GG
Sbjct: 28 CSYSSEVKSLFKRLNV--DPLVVELDELGAQGPQIQKVLERLTGQHTVPNVFIGGKHIGG 85
Query: 111 CDILLKLHQSGELVEQLEKGDQKRKQ 136
C +KL++ GEL L + + K+ Q
Sbjct: 86 CTDTVKLYRKGELEPLLSEANAKKSQ 111
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
P C + +L ++ D +R ++E + T PQ+FI VGGCD L
Sbjct: 14 PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDL 73
Query: 115 LKLHQSGELVEQLEKG 130
L G+L L+ G
Sbjct: 74 YALEDEGKLDSLLKTG 89
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
I++ +++ T T+P+VFI E +GGC L +H+ GEL+ +L++
Sbjct: 56 IQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQ 100
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGE---LVEQLEKGDQKRKQF 137
++ + + T T+P++F+NG F+GG +LH+ G+ LV Q KRK+F
Sbjct: 90 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSKRKEF 145
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGE---LVEQLEKGDQKRKQF 137
++ + + T T+P++F+NG F+GG +LH+ G+ LV Q KRK+F
Sbjct: 68 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSKRKEF 123
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 57 CGFSNAVVQIL-RMHDVPYDSHDVLKDESIRNG------IKEYTSWPTIPQVFINGEFVG 109
C +S A + L + +VP VL+ + + NG ++E + T+P V+ING+ +G
Sbjct: 30 CPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIG 89
Query: 110 GCDILLKLHQSGELVEQLE 128
G L L ++G+L E L+
Sbjct: 90 GNSDLETLKKNGKLAEILK 108
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGE---LVEQLEKGDQKRKQF 137
++ + + T T+P++F+NG F+GG +LH+ G+ LV Q KRK+F
Sbjct: 76 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSKRKEF 131
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 66 ILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVE 125
+L D+ +H I++ +++ T T+P+VFI + +GG L+ L QSGEL+
Sbjct: 41 LLEFVDITATNHT----NEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLT 96
Query: 126 QLEK 129
+L++
Sbjct: 97 RLKQ 100
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
++ + E T+ T+P +F+N VGGCD + +QSG L + L++
Sbjct: 58 VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 71 DVPYDSHDVLKDESIRNG------IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELV 124
+VP VL+ + + NG ++E + T+P V+ING+ +GG L L ++G+L
Sbjct: 62 NVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLA 121
Query: 125 EQLE 128
E L+
Sbjct: 122 EILK 125
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 57 CGFSNAVVQIL-RMHDVPYDSHDVLKDESIRNG------IKEYTSWPTIPQVFINGEFVG 109
C + A + L + +VP VL+ + + NG ++E + T+P V+ING+ +G
Sbjct: 27 CPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIG 86
Query: 110 GCDILLKLHQSGELVEQLE 128
G L L ++G+L E L+
Sbjct: 87 GNSDLETLKKNGKLAEILK 105
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 89 IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
++ T T+P VF+ G+ +GGC +KL++ G+L L + + K Q
Sbjct: 65 LERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANGKNGQ 112
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG-IKEYTSWPTIPQVFINGEFVGGCDI 113
P C + +L V Y D+ S+R ++ T PQ+FI VGGCD
Sbjct: 14 PNCPYCKRARDLLDKKGVKY--TDIDASTSLRQEMVQRANGRNTFPQIFIGDYHVGGCDD 71
Query: 114 LLKLHQSGELVEQLE 128
L L G+L L+
Sbjct: 72 LYALENKGKLDSLLQ 86
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 83 ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLE 128
E ++ IK T T+P + +NG GG + + KLH G+L+E L+
Sbjct: 56 EELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 55 PRCGFSNAVV--QILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD 112
P C + A++ + + ++P D + ++E I+ + T+PQ+FI+ + +GG D
Sbjct: 12 PYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKR-----SGRTTVPQIFIDAQHIGGYD 66
Query: 113 ILLKLHQSGEL 123
L L G L
Sbjct: 67 DLYALDARGGL 77
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 57 CGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK 116
C +S+ +L V + + + + R + + + T+PQ+FI+ + +GG D L
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 117 LHQSGEL 123
L G L
Sbjct: 71 LDARGGL 77
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
P C F Q+L + ++ + D +I + ++ + T+PQVFI G+ +GG D L
Sbjct: 178 PGCPFCAKAKQLLHDKGLSFEEIILGHDATIVS-VRAVSGRTTVPQVFIGGKHIGGSDDL 236
Query: 115 LK 116
K
Sbjct: 237 EK 238
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 84 SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGEL 123
+I+ + ++ T+PQ+F+ G+F+G +LK + + EL
Sbjct: 58 AIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 84 SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGEL 123
+I+ + ++ T+PQ+F+ G+F+G +LK + + EL
Sbjct: 58 AIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 84 SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGEL 123
+I+ + ++ T+PQ+F+ G+F+G +LK + + EL
Sbjct: 58 AIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 97 TIPQVFINGEFVGGCDILLKLHQSGEL 123
++PQ+FI+ + +GGCD + L +G+L
Sbjct: 67 SLPQIFIDDQHIGGCDDIYALDGAGKL 93
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 57 CGFSNAVVQIL-------RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG 109
C +S+A + L R + +D+ + I+ + E T+P ++ING+ +G
Sbjct: 27 CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 86
Query: 110 GCDIL 114
G D L
Sbjct: 87 GNDDL 91
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 77 HDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
+D+ + I+ + E T+P ++ING+ +GG D L
Sbjct: 62 NDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDL 99
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 57 CGFSNAVVQIL-------RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG 109
C +S+A + L R + +D+ + I+ + E T+P ++ING+ +G
Sbjct: 271 CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 330
Query: 110 GCDIL 114
G D L
Sbjct: 331 GNDDL 335
>pdb|1FPN|2 Chain 2, Human Rhinovirus Serotype 2 (Hrv2)
pdb|1V9U|2 Chain 2, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
pdb|3DPR|B Chain B, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
pdb|3TN9|2 Chain 2, X-Ray Structure Of The Hrv2 Empty Capsid (B-Particle)
pdb|3VDD|B Chain B, Structure Of Hrv2 Capsid Complexed With Antiviral
Compound Bta798
Length = 261
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 52 PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP 96
P CG+S+ ++QI R + + + N I Y WP
Sbjct: 2 PTVEACGYSDRIIQITR-------GDSTITSQDVANAIVAYGVWP 39
>pdb|2D0V|A Chain A, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|D Chain D, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|I Chain I, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
Length = 597
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 119 QSGELVEQLEKGDQKRKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHIS 178
++G+L+ +K D F ++ +G VR E + D KG D C + +H + H S
Sbjct: 341 ENGDLISA-DKLDDTVNVFKTVDLKTGLPVRDPEYGTRMDHKGTDICPSAMGYHNQGHDS 399
Query: 179 VE 180
+
Sbjct: 400 YD 401
>pdb|1AYN|2 Chain 2, Human Rhinovirus 16 Coat Protein
pdb|1AYM|2 Chain 2, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|2 Chain 2, Human Rhinovirus 16 Coat Protein In Complex With
Antiviral Compound Vp61209
pdb|1QJX|2 Chain 2, Human Rhinovirus 16 Coat Protein In Complex With
Antiviral Compound Win68934
pdb|1QJY|2 Chain 2, Human Rhinovirus 16 Coat Protein In Complex With
Antiviral Compound Vp65099
pdb|1NCR|B Chain B, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|B Chain B, The Structure Of Rhinovirus 16
pdb|1ND3|B Chain B, The Structure Of Hrv16, When Complexed With Pleconaril,
An Antiviral Compound
Length = 261
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 52 PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP 96
P CG+S+ ++QI R + + + N + Y WP
Sbjct: 2 PSVEACGYSDRIIQITR-------GDSTITSQDVANAVVGYGVWP 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,105,323
Number of Sequences: 62578
Number of extensions: 230072
Number of successful extensions: 538
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 39
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)