Query psy221
Match_columns 205
No_of_seqs 211 out of 1425
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03031 GRX_GRX_like Glutaredo 100.0 9E-38 1.9E-42 249.9 13.6 137 43-181 1-147 (147)
2 KOG2824|consensus 100.0 1E-33 2.3E-38 243.2 11.3 141 41-184 130-279 (281)
3 PRK10824 glutaredoxin-4; Provi 100.0 1.1E-28 2.4E-33 190.0 12.7 103 30-132 3-105 (115)
4 TIGR00365 monothiol glutaredox 99.9 4.5E-27 9.9E-32 175.7 12.5 95 33-127 3-97 (97)
5 TIGR02189 GlrX-like_plant Glut 99.9 6.7E-26 1.4E-30 169.9 11.0 92 36-132 2-96 (99)
6 cd03028 GRX_PICOT_like Glutare 99.9 7.1E-26 1.5E-30 166.6 10.5 90 35-124 1-90 (90)
7 PHA03050 glutaredoxin; Provisi 99.9 1.9E-25 4.1E-30 170.2 13.0 97 32-133 3-105 (108)
8 COG0278 Glutaredoxin-related p 99.9 1.8E-25 4E-30 166.3 11.4 102 29-130 2-104 (105)
9 PTZ00062 glutaredoxin; Provisi 99.9 6.1E-25 1.3E-29 184.4 13.6 102 28-129 99-200 (204)
10 KOG1752|consensus 99.9 4.1E-23 8.8E-28 156.4 12.1 97 31-132 3-102 (104)
11 PRK10638 glutaredoxin 3; Provi 99.9 5.6E-22 1.2E-26 143.2 11.1 82 42-128 2-83 (83)
12 TIGR02181 GRX_bact Glutaredoxi 99.9 6E-22 1.3E-26 141.1 9.7 79 44-127 1-79 (79)
13 KOG0911|consensus 99.9 2.1E-21 4.6E-26 163.3 12.3 99 31-129 128-226 (227)
14 cd03030 GRX_SH3BGR Glutaredoxi 99.9 2.2E-21 4.7E-26 144.0 9.7 86 43-128 1-91 (92)
15 cd03418 GRX_GRXb_1_3_like Glut 99.8 3.9E-20 8.5E-25 129.8 10.4 74 43-121 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.8 4.7E-20 1E-24 129.8 9.7 73 42-119 1-73 (73)
17 TIGR02180 GRX_euk Glutaredoxin 99.8 2.5E-19 5.3E-24 127.6 9.5 79 44-127 1-84 (84)
18 COG0695 GrxC Glutaredoxin and 99.8 2.1E-19 4.7E-24 129.8 9.0 76 43-123 2-79 (80)
19 cd03419 GRX_GRXh_1_2_like Glut 99.8 4.9E-19 1.1E-23 125.9 9.1 78 43-125 1-81 (82)
20 cd03029 GRX_hybridPRX5 Glutare 99.8 1.4E-18 2.9E-23 121.9 9.6 70 43-118 2-71 (72)
21 TIGR02190 GlrX-dom Glutaredoxi 99.8 2.1E-18 4.6E-23 123.6 9.6 75 38-118 4-78 (79)
22 cd02066 GRX_family Glutaredoxi 99.8 1.1E-17 2.4E-22 114.2 10.1 72 43-119 1-72 (72)
23 TIGR02183 GRXA Glutaredoxin, G 99.7 8.8E-18 1.9E-22 122.4 9.6 73 44-121 2-81 (86)
24 PRK11200 grxA glutaredoxin 1; 99.7 1.2E-17 2.7E-22 120.8 10.1 73 43-120 2-81 (85)
25 PF00462 Glutaredoxin: Glutare 99.7 6.3E-17 1.4E-21 109.7 8.2 60 44-108 1-60 (60)
26 PRK12759 bifunctional gluaredo 99.7 5.1E-16 1.1E-20 142.5 10.8 85 42-133 2-94 (410)
27 TIGR02194 GlrX_NrdH Glutaredox 99.6 4.7E-15 1E-19 104.1 7.5 63 44-112 1-64 (72)
28 PRK10329 glutaredoxin-like pro 99.6 1.6E-14 3.6E-19 104.4 9.1 64 43-112 2-65 (81)
29 PF04908 SH3BGR: SH3-binding, 99.5 2.2E-13 4.7E-18 102.4 9.0 86 43-128 2-97 (99)
30 TIGR02196 GlrX_YruB Glutaredox 99.4 4.6E-12 9.9E-17 86.7 8.5 65 43-112 1-65 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.3 1.1E-11 2.3E-16 84.8 8.6 66 43-113 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 99.2 7.9E-11 1.7E-15 82.0 8.7 65 43-112 1-67 (77)
33 cd02973 TRX_GRX_like Thioredox 99.0 1.2E-09 2.6E-14 74.8 6.3 58 43-109 2-64 (67)
34 cd03041 GST_N_2GST_N GST_N fam 98.9 2.7E-08 5.9E-13 70.3 9.3 71 44-119 2-74 (77)
35 cd00570 GST_N_family Glutathio 98.8 4.5E-08 9.8E-13 65.1 7.4 68 45-117 2-69 (71)
36 cd03040 GST_N_mPGES2 GST_N fam 98.7 1.1E-07 2.4E-12 66.7 9.4 69 43-119 1-73 (77)
37 cd03037 GST_N_GRX2 GST_N famil 98.7 1.6E-07 3.4E-12 65.0 8.4 68 45-119 2-70 (71)
38 cd03036 ArsC_like Arsenate Red 98.5 1.5E-07 3.2E-12 71.7 4.8 49 44-97 1-49 (111)
39 TIGR03140 AhpF alkyl hydropero 98.5 6.8E-07 1.5E-11 84.1 10.0 115 21-146 98-224 (515)
40 PRK15317 alkyl hydroperoxide r 98.4 1.2E-06 2.6E-11 82.4 10.4 117 21-146 97-223 (517)
41 cd02977 ArsC_family Arsenate R 98.4 3.1E-07 6.6E-12 68.8 4.9 48 44-96 1-48 (105)
42 cd03055 GST_N_Omega GST_N fami 98.4 1.6E-06 3.5E-11 63.0 8.3 71 41-117 16-87 (89)
43 cd03059 GST_N_SspA GST_N famil 98.4 1.9E-06 4.1E-11 59.3 8.1 69 44-118 1-69 (73)
44 cd03060 GST_N_Omega_like GST_N 98.4 2.2E-06 4.9E-11 59.3 7.8 66 45-116 2-68 (71)
45 cd03026 AhpF_NTD_C TRX-GRX-lik 98.4 1.7E-06 3.8E-11 63.4 7.2 70 31-109 3-77 (89)
46 PF05768 DUF836: Glutaredoxin- 98.3 4.7E-06 1E-10 59.8 8.9 53 43-105 1-57 (81)
47 PF13417 GST_N_3: Glutathione 98.3 2.8E-06 6.1E-11 59.6 7.4 68 46-119 1-68 (75)
48 PRK01655 spxA transcriptional 98.3 1.6E-06 3.4E-11 68.1 6.2 46 44-94 2-47 (131)
49 cd03051 GST_N_GTT2_like GST_N 98.3 2.8E-06 6.1E-11 58.2 6.8 68 45-117 2-72 (74)
50 cd03045 GST_N_Delta_Epsilon GS 98.3 4.5E-06 9.9E-11 57.6 7.5 68 45-117 2-71 (74)
51 TIGR00411 redox_disulf_1 small 98.2 7.8E-06 1.7E-10 57.3 7.5 55 43-106 2-62 (82)
52 cd03056 GST_N_4 GST_N family, 98.2 9.7E-06 2.1E-10 55.5 7.7 67 45-116 2-70 (73)
53 KOG4023|consensus 98.2 5.7E-06 1.2E-10 62.0 6.8 91 42-132 2-101 (108)
54 TIGR01617 arsC_related transcr 98.2 4.7E-06 1E-10 63.8 5.9 46 44-94 1-46 (117)
55 cd03032 ArsC_Spx Arsenate Redu 98.1 5.8E-06 1.3E-10 63.2 6.2 46 44-94 2-47 (115)
56 KOG3029|consensus 98.1 1.5E-05 3.1E-10 70.2 8.1 67 43-117 90-156 (370)
57 PRK12559 transcriptional regul 98.1 7.7E-06 1.7E-10 64.3 5.6 47 44-95 2-48 (131)
58 PRK13344 spxA transcriptional 98.0 8.9E-06 1.9E-10 64.0 5.7 45 44-93 2-46 (132)
59 cd03035 ArsC_Yffb Arsenate Red 98.0 8.1E-06 1.7E-10 61.7 5.0 46 44-94 1-46 (105)
60 cd03054 GST_N_Metaxin GST_N fa 98.0 7.3E-05 1.6E-09 51.7 8.4 57 55-119 14-70 (72)
61 PHA02125 thioredoxin-like prot 98.0 4.1E-05 8.9E-10 53.9 7.1 55 44-108 2-56 (75)
62 cd02975 PfPDO_like_N Pyrococcu 97.9 6E-05 1.3E-09 57.3 8.4 65 30-103 10-81 (113)
63 cd03033 ArsC_15kD Arsenate Red 97.9 1.8E-05 3.9E-10 60.7 5.4 47 43-94 1-47 (113)
64 TIGR00412 redox_disulf_2 small 97.9 5.4E-05 1.2E-09 53.6 6.6 49 55-108 8-60 (76)
65 cd03053 GST_N_Phi GST_N family 97.8 0.00016 3.5E-09 50.1 8.3 71 44-119 2-74 (76)
66 cd03058 GST_N_Tau GST_N family 97.8 0.00015 3.3E-09 50.2 8.0 68 45-118 2-70 (74)
67 cd03061 GST_N_CLIC GST_N famil 97.8 0.0003 6.5E-09 52.1 9.7 77 42-119 4-83 (91)
68 cd03052 GST_N_GDAP1 GST_N fami 97.7 0.00018 3.8E-09 50.5 7.3 69 44-117 1-71 (73)
69 TIGR03143 AhpF_homolog putativ 97.7 0.00022 4.7E-09 68.0 9.4 80 19-107 455-539 (555)
70 cd03076 GST_N_Pi GST_N family, 97.7 0.0004 8.7E-09 48.3 8.4 70 43-118 1-70 (73)
71 cd03042 GST_N_Zeta GST_N famil 97.7 0.00024 5.1E-09 48.6 7.0 68 45-117 2-71 (73)
72 PF13192 Thioredoxin_3: Thiore 97.6 0.00043 9.2E-09 48.9 8.0 48 55-107 8-59 (76)
73 cd03049 GST_N_3 GST_N family, 97.6 0.00034 7.4E-09 48.2 6.9 67 45-117 2-71 (73)
74 cd03080 GST_N_Metaxin_like GST 97.6 0.00057 1.2E-08 47.7 8.1 68 44-119 2-71 (75)
75 TIGR02187 GlrX_arch Glutaredox 97.6 0.00059 1.3E-08 57.2 9.5 72 26-106 119-195 (215)
76 cd03039 GST_N_Sigma_like GST_N 97.6 0.00047 1E-08 47.4 7.4 68 45-117 2-69 (72)
77 TIGR01295 PedC_BrcD bacterioci 97.6 0.0006 1.3E-08 52.6 8.7 72 35-111 16-106 (122)
78 PHA02278 thioredoxin-like prot 97.6 0.00079 1.7E-08 50.6 9.1 66 39-108 12-85 (103)
79 COG1393 ArsC Arsenate reductas 97.5 0.00018 4E-09 55.6 5.4 46 43-93 2-47 (117)
80 cd02953 DsbDgamma DsbD gamma f 97.5 0.00045 9.7E-09 50.8 7.1 64 35-103 4-78 (104)
81 cd03048 GST_N_Ure2p_like GST_N 97.5 0.00076 1.6E-08 47.5 7.8 68 44-117 2-74 (81)
82 TIGR01616 nitro_assoc nitrogen 97.4 0.00032 6.8E-09 54.9 5.6 46 43-93 2-47 (126)
83 TIGR02182 GRXB Glutaredoxin, G 97.4 0.00059 1.3E-08 56.8 7.6 68 46-120 2-70 (209)
84 COG4545 Glutaredoxin-related p 97.4 0.00054 1.2E-08 49.1 6.0 65 45-115 5-82 (85)
85 cd03038 GST_N_etherase_LigE GS 97.4 0.00063 1.4E-08 48.4 6.5 74 45-119 2-80 (84)
86 PRK10026 arsenate reductase; P 97.4 0.00038 8.2E-09 55.5 5.7 47 42-93 2-48 (141)
87 PRK10387 glutaredoxin 2; Provi 97.4 0.00084 1.8E-08 55.1 8.0 69 45-120 2-71 (210)
88 TIGR00014 arsC arsenate reduct 97.4 0.00033 7.1E-09 53.5 5.1 46 44-94 1-46 (114)
89 PRK10853 putative reductase; P 97.4 0.00033 7.1E-09 54.1 5.1 46 44-94 2-47 (118)
90 cd03034 ArsC_ArsC Arsenate Red 97.4 0.00037 8.1E-09 53.0 5.1 45 44-93 1-45 (112)
91 cd01659 TRX_superfamily Thiore 97.3 0.0009 1.9E-08 41.9 5.8 56 44-105 1-61 (69)
92 cd02949 TRX_NTR TRX domain, no 97.2 0.0028 6E-08 46.2 8.6 55 45-108 18-80 (97)
93 PF13409 GST_N_2: Glutathione 97.2 0.00077 1.7E-08 46.7 5.4 64 56-119 1-68 (70)
94 cd03050 GST_N_Theta GST_N fami 97.2 0.003 6.6E-08 43.8 7.9 68 45-117 2-71 (76)
95 cd03044 GST_N_EF1Bgamma GST_N 97.2 0.0022 4.8E-08 44.6 7.1 68 45-117 2-71 (75)
96 cd02947 TRX_family TRX family; 97.1 0.0035 7.6E-08 43.2 7.8 56 44-108 14-76 (93)
97 cd02954 DIM1 Dim1 family; Dim1 97.1 0.0032 6.9E-08 48.5 8.2 58 43-109 16-82 (114)
98 PTZ00051 thioredoxin; Provisio 97.0 0.0066 1.4E-07 43.7 8.6 67 34-109 10-85 (98)
99 cd02985 TRX_CDSP32 TRX family, 97.0 0.0069 1.5E-07 44.8 8.8 61 42-108 16-84 (103)
100 PF14595 Thioredoxin_9: Thiore 97.0 0.00078 1.7E-08 52.7 3.7 70 28-103 29-103 (129)
101 cd02989 Phd_like_TxnDC9 Phosdu 97.0 0.0075 1.6E-07 45.7 9.0 63 40-110 21-90 (113)
102 cd02957 Phd_like Phosducin (Ph 97.0 0.0053 1.1E-07 46.1 8.1 66 42-117 25-98 (113)
103 PRK09481 sspA stringent starva 97.0 0.0045 9.7E-08 51.3 8.3 69 43-117 10-78 (211)
104 cd03047 GST_N_2 GST_N family, 96.9 0.0059 1.3E-07 42.1 7.4 67 45-116 2-70 (73)
105 PF00085 Thioredoxin: Thioredo 96.9 0.0025 5.4E-08 45.7 5.3 61 41-109 17-85 (103)
106 cd03057 GST_N_Beta GST_N famil 96.8 0.0082 1.8E-07 41.6 7.2 67 45-117 2-71 (77)
107 PF03960 ArsC: ArsC family; I 96.7 0.0035 7.6E-08 47.2 5.5 39 55-93 4-42 (110)
108 cd02951 SoxW SoxW family; SoxW 96.7 0.0062 1.3E-07 46.2 6.9 68 32-104 3-92 (125)
109 cd03046 GST_N_GTT1_like GST_N 96.7 0.012 2.5E-07 40.4 7.3 69 45-119 2-72 (76)
110 cd03043 GST_N_1 GST_N family, 96.7 0.014 3.1E-07 40.5 7.7 63 55-117 8-71 (73)
111 cd02987 Phd_like_Phd Phosducin 96.7 0.012 2.7E-07 48.1 8.5 58 43-110 85-150 (175)
112 cd02986 DLP Dim1 family, Dim1- 96.6 0.0064 1.4E-07 46.9 6.2 69 30-108 4-81 (114)
113 TIGR00862 O-ClC intracellular 96.6 0.017 3.7E-07 49.7 9.5 75 44-119 3-80 (236)
114 cd02994 PDI_a_TMX PDIa family, 96.6 0.012 2.7E-07 42.6 7.3 63 35-106 11-82 (101)
115 KOG0910|consensus 96.5 0.006 1.3E-07 49.1 5.6 69 31-108 50-128 (150)
116 COG3118 Thioredoxin domain-con 96.5 0.0086 1.9E-07 53.2 7.0 77 28-112 30-114 (304)
117 PRK15113 glutathione S-transfe 96.5 0.018 3.9E-07 47.8 8.5 71 42-117 4-78 (214)
118 TIGR02187 GlrX_arch Glutaredox 96.5 0.025 5.5E-07 47.3 9.4 65 40-108 19-90 (215)
119 TIGR01068 thioredoxin thioredo 96.5 0.038 8.2E-07 39.2 9.1 58 43-108 16-81 (101)
120 cd02959 ERp19 Endoplasmic reti 96.2 0.022 4.7E-07 43.5 7.0 66 30-103 7-82 (117)
121 cd03000 PDI_a_TMX3 PDIa family 96.1 0.019 4E-07 42.2 6.1 66 30-103 4-78 (104)
122 cd02963 TRX_DnaJ TRX domain, D 96.1 0.044 9.6E-07 41.0 8.3 59 41-108 24-92 (111)
123 cd02984 TRX_PICOT TRX domain, 96.1 0.048 1.1E-06 38.9 8.1 58 42-108 15-81 (97)
124 PRK09381 trxA thioredoxin; Pro 96.1 0.022 4.7E-07 42.0 6.1 60 41-109 21-89 (109)
125 COG3634 AhpF Alkyl hydroperoxi 96.1 0.032 6.8E-07 51.3 8.2 117 21-146 97-223 (520)
126 cd02948 TRX_NDPK TRX domain, T 96.0 0.052 1.1E-06 39.9 8.1 57 41-107 17-83 (102)
127 cd02956 ybbN ybbN protein fami 96.0 0.034 7.4E-07 39.8 6.8 57 43-108 14-79 (96)
128 cd02962 TMX2 TMX2 family; comp 96.0 0.033 7.1E-07 44.8 7.2 61 44-109 51-122 (152)
129 PF13098 Thioredoxin_2: Thiore 96.0 0.039 8.4E-07 40.6 7.1 66 42-112 7-103 (112)
130 PRK10996 thioredoxin 2; Provis 95.8 0.078 1.7E-06 41.5 8.8 66 34-108 44-119 (139)
131 KOG4244|consensus 95.8 0.025 5.4E-07 49.6 6.3 89 17-116 22-112 (281)
132 cd02961 PDI_a_family Protein D 95.8 0.073 1.6E-06 37.2 7.8 60 35-103 8-77 (101)
133 cd03005 PDI_a_ERp46 PDIa famil 95.8 0.052 1.1E-06 39.0 7.0 63 36-107 11-85 (102)
134 TIGR01126 pdi_dom protein disu 95.7 0.063 1.4E-06 38.3 7.3 51 44-103 17-75 (102)
135 cd02955 SSP411 TRX domain, SSP 95.7 0.063 1.4E-06 41.7 7.6 71 35-109 8-95 (124)
136 PLN02817 glutathione dehydroge 95.7 0.043 9.3E-07 47.8 7.4 63 55-118 71-133 (265)
137 TIGR01262 maiA maleylacetoacet 95.6 0.03 6.5E-07 45.8 6.0 63 55-117 6-71 (210)
138 cd02996 PDI_a_ERp44 PDIa famil 95.6 0.071 1.5E-06 39.2 7.4 62 36-106 12-89 (108)
139 KOG0406|consensus 95.6 0.073 1.6E-06 45.8 8.2 72 42-119 8-80 (231)
140 PLN02473 glutathione S-transfe 95.6 0.061 1.3E-06 44.2 7.5 69 44-117 3-73 (214)
141 PRK10877 protein disulfide iso 95.5 0.066 1.4E-06 45.8 7.9 31 42-77 109-142 (232)
142 cd03003 PDI_a_ERdj5_N PDIa fam 95.5 0.085 1.8E-06 38.3 7.3 54 44-106 22-83 (101)
143 KOG0907|consensus 95.4 0.12 2.5E-06 39.2 8.0 68 31-107 10-86 (106)
144 cd02988 Phd_like_VIAF Phosduci 95.4 0.097 2.1E-06 43.6 8.3 67 32-110 90-167 (192)
145 cd02999 PDI_a_ERp44_like PDIa 95.4 0.091 2E-06 38.7 7.3 51 44-103 22-78 (100)
146 PLN02378 glutathione S-transfe 95.4 0.063 1.4E-06 44.6 7.1 62 55-117 18-79 (213)
147 cd02965 HyaE HyaE family; HyaE 95.4 0.066 1.4E-06 41.0 6.6 60 43-111 30-99 (111)
148 COG3019 Predicted metal-bindin 95.2 0.09 2E-06 42.0 7.1 73 41-122 25-104 (149)
149 cd03001 PDI_a_P5 PDIa family, 95.2 0.14 3.1E-06 36.7 7.7 45 55-103 28-78 (103)
150 cd03004 PDI_a_ERdj5_C PDIa fam 95.2 0.12 2.6E-06 37.5 7.3 53 44-105 23-83 (104)
151 COG2999 GrxB Glutaredoxin 2 [P 95.2 0.032 7E-07 46.5 4.5 63 55-119 7-70 (215)
152 cd03079 GST_N_Metaxin2 GST_N f 95.0 0.065 1.4E-06 38.1 5.1 57 55-118 15-71 (74)
153 cd02993 PDI_a_APS_reductase PD 95.0 0.19 4.1E-06 37.2 7.9 54 42-102 23-83 (109)
154 cd03077 GST_N_Alpha GST_N fami 94.9 0.24 5.2E-06 34.8 8.0 68 44-117 2-71 (79)
155 PTZ00062 glutaredoxin; Provisi 94.8 0.12 2.5E-06 43.7 7.1 64 33-110 7-77 (204)
156 PF13728 TraF: F plasmid trans 94.7 0.14 3E-06 43.4 7.3 69 30-103 110-189 (215)
157 cd03006 PDI_a_EFP1_N PDIa fami 94.6 0.073 1.6E-06 40.6 4.9 55 44-106 33-95 (113)
158 cd02952 TRP14_like Human TRX-r 94.6 0.14 3.1E-06 39.5 6.5 62 42-103 22-96 (119)
159 cd03078 GST_N_Metaxin1_like GS 94.5 0.47 1E-05 33.2 8.5 57 55-119 14-70 (73)
160 cd03002 PDI_a_MPD1_like PDI fa 94.5 0.16 3.5E-06 37.0 6.4 53 44-103 22-80 (109)
161 cd03008 TryX_like_RdCVF Trypar 94.4 0.46 1E-05 37.9 9.3 29 37-69 21-49 (146)
162 cd02950 TxlA TRX-like protein 94.3 0.23 5.1E-06 39.0 7.3 62 41-108 20-90 (142)
163 cd02998 PDI_a_ERp38 PDIa famil 94.2 0.19 4.1E-06 35.9 6.3 51 44-103 22-81 (105)
164 cd03020 DsbA_DsbC_DsbG DsbA fa 94.2 0.24 5.1E-06 40.7 7.5 34 41-79 78-113 (197)
165 KOG1422|consensus 94.2 0.19 4.1E-06 42.7 6.9 62 55-119 19-82 (221)
166 cd02972 DsbA_family DsbA famil 93.9 0.18 3.9E-06 35.0 5.5 32 44-80 1-38 (98)
167 COG0625 Gst Glutathione S-tran 93.8 0.23 5E-06 40.8 6.8 68 45-117 2-71 (211)
168 PRK13728 conjugal transfer pro 93.8 0.21 4.6E-06 41.4 6.5 65 43-112 72-159 (181)
169 PRK00293 dipZ thiol:disulfide 93.8 0.36 7.8E-06 46.6 9.0 69 30-103 462-540 (571)
170 TIGR02740 TraF-like TraF-like 93.8 0.25 5.4E-06 43.3 7.2 64 35-103 161-235 (271)
171 PRK10357 putative glutathione 93.7 0.24 5.2E-06 40.3 6.6 66 45-116 2-68 (202)
172 PF11009 DUF2847: Protein of u 93.6 1 2.3E-05 34.2 9.4 72 34-109 12-92 (105)
173 PTZ00102 disulphide isomerase; 93.4 0.63 1.4E-05 42.9 9.6 64 34-106 41-117 (477)
174 PF13899 Thioredoxin_7: Thiore 93.4 0.34 7.4E-06 34.1 6.2 34 30-67 5-39 (82)
175 PLN00410 U5 snRNP protein, DIM 93.4 0.32 6.9E-06 38.8 6.6 57 42-106 24-89 (142)
176 PLN02395 glutathione S-transfe 93.4 0.48 1E-05 38.8 7.9 70 44-119 3-74 (215)
177 PF02798 GST_N: Glutathione S- 93.4 0.7 1.5E-05 32.1 7.7 58 59-116 11-72 (76)
178 cd03065 PDI_b_Calsequestrin_N 93.3 0.57 1.2E-05 36.2 7.8 67 35-109 19-101 (120)
179 PTZ00443 Thioredoxin domain-co 93.3 0.35 7.6E-06 41.3 7.2 56 44-108 56-119 (224)
180 cd02997 PDI_a_PDIR PDIa family 93.2 0.29 6.4E-06 35.0 5.8 57 44-107 21-87 (104)
181 PF06953 ArsD: Arsenical resis 93.1 0.4 8.7E-06 37.4 6.6 53 61-114 30-91 (123)
182 cd02992 PDI_a_QSOX PDIa family 93.0 0.51 1.1E-05 35.5 7.0 54 43-103 21-84 (114)
183 COG2143 Thioredoxin-related pr 92.9 1.1 2.4E-05 36.7 9.0 69 30-103 30-121 (182)
184 PRK13972 GSH-dependent disulfi 92.4 0.77 1.7E-05 37.8 7.8 54 44-103 2-57 (215)
185 PRK11752 putative S-transferas 92.3 0.65 1.4E-05 40.1 7.5 85 26-117 28-124 (264)
186 TIGR02739 TraF type-F conjugat 92.0 0.66 1.4E-05 40.5 7.2 69 30-103 140-219 (256)
187 cd03009 TryX_like_TryX_NRX Try 91.5 1 2.2E-05 34.0 7.1 24 41-68 18-41 (131)
188 PF06764 DUF1223: Protein of u 91.4 0.21 4.6E-06 42.1 3.4 64 44-112 2-86 (202)
189 cd02958 UAS UAS family; UAS is 91.1 0.79 1.7E-05 34.1 6.0 68 30-103 5-82 (114)
190 PRK13703 conjugal pilus assemb 91.1 0.98 2.1E-05 39.3 7.3 68 31-103 134-212 (248)
191 PTZ00057 glutathione s-transfe 90.8 1.7 3.6E-05 35.7 8.3 69 43-116 4-77 (205)
192 cd02995 PDI_a_PDI_a'_C PDIa fa 90.6 0.7 1.5E-05 32.9 5.2 50 44-103 22-79 (104)
193 cd03075 GST_N_Mu GST_N family, 90.6 2 4.4E-05 30.3 7.5 60 57-116 9-76 (82)
194 TIGR02738 TrbB type-F conjugat 90.6 1.3 2.8E-05 35.5 7.1 59 40-103 50-124 (153)
195 KOG3425|consensus 90.5 0.63 1.4E-05 36.4 5.0 57 26-82 10-76 (128)
196 PF06110 DUF953: Eukaryotic pr 90.4 0.47 1E-05 36.8 4.3 73 31-103 8-95 (119)
197 cd02964 TryX_like_family Trypa 90.2 1.6 3.5E-05 33.2 7.1 24 41-68 17-40 (132)
198 COG5494 Predicted thioredoxin/ 89.7 1.4 2.9E-05 37.9 6.7 70 41-119 10-85 (265)
199 cd02982 PDI_b'_family Protein 88.5 1.3 2.9E-05 31.6 5.3 54 41-103 13-74 (103)
200 TIGR00424 APS_reduc 5'-adenyly 88.3 1.8 3.9E-05 40.9 7.3 58 41-105 371-438 (463)
201 TIGR01130 ER_PDI_fam protein d 88.1 2.3 5.1E-05 38.5 7.8 64 35-107 11-87 (462)
202 PRK03147 thiol-disulfide oxido 88.0 4.4 9.5E-05 31.8 8.5 38 41-82 61-105 (173)
203 PRK10542 glutathionine S-trans 87.7 2.1 4.6E-05 34.5 6.6 59 59-117 10-72 (201)
204 KOG0868|consensus 86.7 1.7 3.7E-05 36.4 5.4 69 43-116 5-76 (217)
205 PLN02309 5'-adenylylsulfate re 86.2 3.5 7.6E-05 38.9 7.9 53 43-103 368-428 (457)
206 cd03010 TlpA_like_DsbE TlpA-li 85.2 7.1 0.00015 29.1 8.0 34 44-82 29-66 (127)
207 KOG1695|consensus 84.9 4.8 0.0001 34.1 7.5 62 55-117 10-71 (206)
208 TIGR00385 dsbE periplasmic pro 84.9 7.3 0.00016 31.1 8.3 38 40-81 62-102 (173)
209 cd03011 TlpA_like_ScsD_MtbDsbE 84.1 1.5 3.3E-05 32.4 3.8 23 43-70 23-45 (123)
210 PF10568 Tom37: Outer mitochon 84.1 7.3 0.00016 27.3 7.0 55 56-118 13-71 (72)
211 cd02960 AGR Anterior Gradient 84.1 2.1 4.6E-05 33.6 4.7 34 30-67 11-45 (130)
212 TIGR02661 MauD methylamine deh 84.0 6.6 0.00014 32.1 7.8 62 42-108 75-160 (189)
213 cd03023 DsbA_Com1_like DsbA fa 81.3 1.9 4.1E-05 32.7 3.4 57 61-117 86-149 (154)
214 COG5429 Uncharacterized secret 80.9 2.6 5.7E-05 36.6 4.4 66 42-112 43-129 (261)
215 PRK11657 dsbG disulfide isomer 80.8 2 4.3E-05 37.1 3.7 33 42-79 119-155 (251)
216 COG0526 TrxA Thiol-disulfide i 80.3 5.7 0.00012 27.1 5.4 50 55-106 42-100 (127)
217 cd02967 mauD Methylamine utili 79.5 7.8 0.00017 28.1 6.1 57 41-102 21-83 (114)
218 cd02966 TlpA_like_family TlpA- 79.3 9.1 0.0002 26.7 6.3 36 42-82 21-63 (116)
219 PF08534 Redoxin: Redoxin; In 78.4 7 0.00015 29.8 5.8 47 40-91 27-82 (146)
220 PRK15412 thiol:disulfide inter 78.4 10 0.00022 30.7 7.1 39 40-83 67-109 (185)
221 KOG0867|consensus 77.9 11 0.00023 31.9 7.2 70 43-117 2-73 (226)
222 cd03007 PDI_a_ERp29_N PDIa fam 77.4 29 0.00063 26.6 8.9 69 35-106 11-91 (116)
223 TIGR03143 AhpF_homolog putativ 76.4 7.5 0.00016 37.2 6.5 52 43-103 369-425 (555)
224 smart00594 UAS UAS domain. 76.3 11 0.00023 28.6 6.2 69 29-103 14-92 (122)
225 cd03022 DsbA_HCCA_Iso DsbA fam 75.5 4.7 0.0001 32.1 4.3 57 61-117 124-187 (192)
226 PF01323 DSBA: DSBA-like thior 75.1 2.7 5.8E-05 33.5 2.7 57 61-117 124-188 (193)
227 cd03146 GAT1_Peptidase_E Type 75.0 38 0.00082 28.2 9.7 107 28-147 17-124 (212)
228 PRK05282 (alpha)-aspartyl dipe 74.9 21 0.00045 30.7 8.2 105 29-147 18-123 (233)
229 COG3340 PepE Peptidase E [Amin 73.3 57 0.0012 28.1 10.3 93 29-130 18-115 (224)
230 PF13462 Thioredoxin_4: Thiore 72.8 6.3 0.00014 30.3 4.2 24 94-117 133-156 (162)
231 cd02970 PRX_like2 Peroxiredoxi 72.7 25 0.00054 26.4 7.5 45 55-101 34-85 (149)
232 PF10865 DUF2703: Domain of un 72.7 13 0.00028 28.9 5.8 46 55-107 13-71 (120)
233 PF00578 AhpC-TSA: AhpC/TSA fa 72.2 11 0.00023 27.6 5.2 58 40-102 24-88 (124)
234 PTZ00102 disulphide isomerase; 71.7 7.8 0.00017 35.6 5.2 54 42-103 376-437 (477)
235 PF04134 DUF393: Protein of un 70.5 14 0.0003 27.2 5.5 65 55-120 5-76 (114)
236 PRK14018 trifunctional thiored 70.1 16 0.00035 35.1 7.0 25 42-70 57-81 (521)
237 TIGR01130 ER_PDI_fam protein d 67.4 11 0.00023 34.2 5.1 51 42-103 365-425 (462)
238 cd02974 AhpF_NTD_N Alkyl hydro 67.0 17 0.00037 26.7 5.2 44 30-79 9-57 (94)
239 cd03023 DsbA_Com1_like DsbA fa 66.2 6.2 0.00014 29.8 2.9 35 41-80 6-45 (154)
240 PF07315 DUF1462: Protein of u 64.1 25 0.00055 26.1 5.5 39 72-110 38-80 (93)
241 PHA03075 glutaredoxin-like pro 63.6 10 0.00022 29.5 3.5 31 42-77 3-33 (123)
242 KOG2501|consensus 63.4 41 0.00089 27.4 7.2 44 35-82 27-77 (157)
243 PF03190 Thioredox_DsbH: Prote 63.3 46 0.00099 27.2 7.5 69 35-108 30-116 (163)
244 COG4232 Thiol:disulfide interc 63.0 17 0.00038 35.3 5.7 64 34-103 464-540 (569)
245 cd03019 DsbA_DsbA DsbA family, 62.5 11 0.00023 29.6 3.6 52 61-112 100-158 (178)
246 cd03019 DsbA_DsbA DsbA family, 61.7 9 0.0002 30.0 3.1 35 41-80 16-56 (178)
247 PF09822 ABC_transp_aux: ABC-t 61.7 33 0.00071 29.4 6.8 69 26-95 11-86 (271)
248 cd03012 TlpA_like_DipZ_like Tl 61.5 29 0.00062 25.9 5.8 25 40-68 22-46 (126)
249 KOG0908|consensus 61.4 21 0.00045 31.5 5.4 74 30-112 11-94 (288)
250 PF13905 Thioredoxin_8: Thiore 61.3 28 0.0006 24.3 5.4 34 44-82 5-44 (95)
251 PRK11509 hydrogenase-1 operon 60.8 80 0.0017 24.8 9.9 67 42-112 35-108 (132)
252 KOG0190|consensus 60.2 26 0.00056 33.5 6.3 66 32-106 32-110 (493)
253 COG3011 Predicted thiol-disulf 59.8 27 0.00058 27.8 5.4 69 40-116 7-81 (137)
254 PF09413 DUF2007: Domain of un 59.0 12 0.00025 25.2 2.9 53 44-106 1-53 (67)
255 TIGR01689 EcbF-BcbF capsule bi 58.7 36 0.00079 26.4 6.0 50 27-81 25-87 (126)
256 TIGR03140 AhpF alkyl hydropero 58.2 63 0.0014 30.5 8.6 25 55-79 28-57 (515)
257 KOG4420|consensus 57.8 7.4 0.00016 34.5 2.1 72 44-120 27-100 (325)
258 PF00731 AIRC: AIR carboxylase 55.4 22 0.00047 28.6 4.3 38 43-83 2-39 (150)
259 PF02114 Phosducin: Phosducin; 55.3 20 0.00044 31.4 4.4 74 55-133 156-240 (265)
260 cd03018 PRX_AhpE_like Peroxire 54.4 54 0.0012 24.8 6.3 35 55-89 39-80 (149)
261 PF13462 Thioredoxin_4: Thiore 54.2 15 0.00033 28.1 3.2 38 41-83 13-58 (162)
262 KOG4277|consensus 52.9 16 0.00035 33.2 3.4 76 28-108 30-112 (468)
263 cd02969 PRX_like1 Peroxiredoxi 52.9 53 0.0012 25.8 6.3 28 36-67 20-47 (171)
264 cd03017 PRX_BCP Peroxiredoxin 52.3 51 0.0011 24.5 5.8 54 41-100 23-84 (140)
265 cd03010 TlpA_like_DsbE TlpA-li 52.1 66 0.0014 23.7 6.4 78 17-104 30-108 (127)
266 PRK09437 bcp thioredoxin-depen 51.5 65 0.0014 24.7 6.5 57 40-101 29-92 (154)
267 cd03015 PRX_Typ2cys Peroxiredo 50.8 55 0.0012 25.9 6.1 36 41-80 29-72 (173)
268 PRK10954 periplasmic protein d 50.7 19 0.0004 29.8 3.4 52 61-112 124-182 (207)
269 TIGR01162 purE phosphoribosyla 50.3 43 0.00093 27.2 5.3 28 55-82 9-36 (156)
270 PF03575 Peptidase_S51: Peptid 50.1 62 0.0013 25.3 6.2 80 61-152 3-85 (154)
271 cd02971 PRX_family Peroxiredox 49.6 79 0.0017 23.4 6.5 57 40-101 21-85 (140)
272 COG4837 Uncharacterized protei 47.6 66 0.0014 24.2 5.4 67 40-110 3-87 (106)
273 TIGR03759 conj_TIGR03759 integ 46.7 39 0.00084 28.6 4.6 59 40-106 108-168 (200)
274 COG4087 Soluble P-type ATPase 44.6 1.7E+02 0.0036 23.6 8.4 81 27-119 31-111 (152)
275 TIGR00385 dsbE periplasmic pro 43.9 75 0.0016 25.2 5.8 67 30-106 80-149 (173)
276 PF11287 DUF3088: Protein of u 43.6 42 0.00092 25.8 4.0 48 55-105 22-76 (112)
277 PTZ00056 glutathione peroxidas 43.2 95 0.0021 25.6 6.5 25 55-79 49-80 (199)
278 PF14451 Ub-Mut7C: Mut7-C ubiq 42.8 21 0.00046 25.6 2.2 18 62-79 34-51 (81)
279 PLN02234 1-deoxy-D-xylulose-5- 42.4 38 0.00083 33.5 4.5 78 42-127 545-628 (641)
280 cd03014 PRX_Atyp2cys Peroxired 42.3 1E+02 0.0023 23.1 6.2 54 41-99 26-85 (143)
281 PF13905 Thioredoxin_8: Thiore 42.3 1.1E+02 0.0024 21.0 8.1 44 58-103 45-88 (95)
282 cd00340 GSH_Peroxidase Glutath 41.8 87 0.0019 24.2 5.8 22 42-69 23-45 (152)
283 cd01480 vWA_collagen_alpha_1-V 41.5 99 0.0022 24.7 6.3 61 44-106 113-184 (186)
284 TIGR02540 gpx7 putative glutat 41.5 91 0.002 24.0 5.9 19 44-67 26-44 (153)
285 KOG2961|consensus 40.0 2.1E+02 0.0046 23.6 7.7 93 33-128 71-167 (190)
286 cd03024 DsbA_FrnE DsbA family, 39.6 80 0.0017 25.2 5.4 56 61-116 132-195 (201)
287 PF10087 DUF2325: Uncharacteri 39.5 1.4E+02 0.0031 21.4 7.1 58 29-91 36-95 (97)
288 PRK15317 alkyl hydroperoxide r 39.1 63 0.0014 30.5 5.4 24 55-78 28-56 (517)
289 PLN02399 phospholipid hydroper 39.0 1.3E+02 0.0029 25.8 6.9 31 44-79 103-140 (236)
290 PLN02412 probable glutathione 38.6 1.8E+02 0.0038 23.0 7.3 17 42-63 30-47 (167)
291 PF09419 PGP_phosphatase: Mito 38.1 2.2E+02 0.0048 23.2 7.7 79 28-108 61-147 (168)
292 TIGR02069 cyanophycinase cyano 37.0 2.7E+02 0.0059 23.9 10.4 106 28-147 13-126 (250)
293 PRK11914 diacylglycerol kinase 36.6 2.8E+02 0.0061 24.0 9.1 6 98-103 89-94 (306)
294 PF01323 DSBA: DSBA-like thior 36.4 42 0.0009 26.5 3.2 35 43-82 1-40 (193)
295 PTZ00256 glutathione peroxidas 36.3 1E+02 0.0023 24.7 5.6 25 55-79 51-82 (183)
296 cd01750 GATase1_CobQ Type 1 gl 36.2 1.6E+02 0.0035 24.0 6.8 28 55-82 7-34 (194)
297 PF08442 ATP-grasp_2: ATP-gras 35.8 31 0.00068 28.9 2.5 46 61-106 5-53 (202)
298 KOG1672|consensus 35.8 1.5E+02 0.0032 25.2 6.4 114 11-133 52-180 (211)
299 COG0041 PurE Phosphoribosylcar 34.1 1.4E+02 0.003 24.4 5.8 62 55-116 13-101 (162)
300 PF02780 Transketolase_C: Tran 34.0 58 0.0012 24.3 3.5 37 40-80 8-44 (124)
301 cd06388 PBP1_iGluR_AMPA_GluR4 33.5 2.2E+02 0.0049 25.5 7.8 86 27-117 48-146 (371)
302 PLN02919 haloacid dehalogenase 33.5 73 0.0016 33.3 5.2 26 39-69 418-444 (1057)
303 PLN02790 transketolase 33.4 1.2E+02 0.0027 29.8 6.5 67 42-112 541-611 (654)
304 COG1198 PriA Primosomal protei 33.3 5.3E+02 0.011 26.1 12.1 52 134-187 431-484 (730)
305 COG2761 FrnE Predicted dithiol 33.1 20 0.00043 30.8 0.9 25 43-72 7-31 (225)
306 cd05295 MDH_like Malate dehydr 33.0 1.2E+02 0.0026 28.8 6.1 65 55-119 2-82 (452)
307 PF04566 RNA_pol_Rpb2_4: RNA p 32.6 34 0.00074 23.4 1.8 18 101-118 1-18 (63)
308 TIGR03137 AhpC peroxiredoxin. 32.5 1.7E+02 0.0037 23.6 6.3 38 40-81 30-75 (187)
309 PRK14873 primosome assembly pr 32.4 36 0.00078 33.7 2.7 52 134-187 379-431 (665)
310 cd03016 PRX_1cys Peroxiredoxin 31.1 1.6E+02 0.0035 24.1 6.1 27 55-81 36-69 (203)
311 PRK13527 glutamine amidotransf 31.0 2.8E+02 0.0061 22.5 7.4 27 55-81 11-37 (200)
312 KOG4700|consensus 30.9 1.2E+02 0.0026 25.5 5.0 20 62-81 51-70 (207)
313 PRK12571 1-deoxy-D-xylulose-5- 29.8 1.5E+02 0.0032 29.2 6.4 67 42-113 505-572 (641)
314 COG4408 Uncharacterized protei 29.7 57 0.0012 30.1 3.2 58 14-76 143-200 (431)
315 COG0045 SucC Succinyl-CoA synt 29.5 74 0.0016 29.6 4.0 46 61-106 6-54 (387)
316 PF07449 HyaE: Hydrogenase-1 e 29.3 2.5E+02 0.0055 21.2 7.5 72 41-116 26-103 (107)
317 KOG0191|consensus 29.1 90 0.002 28.2 4.5 55 40-103 47-107 (383)
318 TIGR00734 hisAF_rel hisA/hisF 29.0 1.8E+02 0.0038 24.5 6.0 61 58-120 141-205 (221)
319 PF15135 UPF0515: Uncharacteri 28.8 30 0.00064 30.4 1.2 25 160-194 206-230 (278)
320 cd06387 PBP1_iGluR_AMPA_GluR3 28.6 2.4E+02 0.0051 25.6 7.2 73 27-104 48-133 (372)
321 cd02968 SCO SCO (an acronym fo 28.6 1.2E+02 0.0025 22.6 4.4 21 43-68 25-46 (142)
322 PRK09212 pyruvate dehydrogenas 28.1 1.7E+02 0.0037 26.1 6.1 66 42-112 202-269 (327)
323 cd06389 PBP1_iGluR_AMPA_GluR2 27.9 2.1E+02 0.0046 25.5 6.7 85 28-117 43-140 (370)
324 KOG4716|consensus 27.0 24 0.00053 32.8 0.4 25 122-146 7-31 (503)
325 TIGR00614 recQ_fam ATP-depende 26.7 4.2E+02 0.0091 24.6 8.6 46 40-91 225-270 (470)
326 PLN02683 pyruvate dehydrogenas 26.4 1.7E+02 0.0037 26.6 5.8 64 41-112 228-296 (356)
327 KOG0190|consensus 26.4 23 0.00051 33.8 0.2 39 31-74 372-413 (493)
328 PTZ00110 helicase; Provisional 26.3 4.4E+02 0.0096 25.2 8.8 52 34-91 369-421 (545)
329 KOG2454|consensus 26.1 1.3E+02 0.0027 28.5 4.8 67 26-92 201-268 (583)
330 PRK15348 type III secretion sy 25.8 1.4E+02 0.0031 26.0 4.9 85 43-133 20-122 (249)
331 TIGR01182 eda Entner-Doudoroff 25.8 3.3E+02 0.0072 22.8 7.1 78 37-121 3-80 (204)
332 PF01451 LMWPc: Low molecular 25.7 2E+02 0.0044 21.6 5.4 35 40-74 27-61 (138)
333 cd00079 HELICc Helicase superf 25.7 2.5E+02 0.0054 19.9 8.4 57 31-93 17-74 (131)
334 PRK09590 celB cellobiose phosp 25.6 2.4E+02 0.0052 21.0 5.5 34 86-119 64-101 (104)
335 TIGR00595 priA primosomal prot 24.8 54 0.0012 31.2 2.3 52 134-187 209-262 (505)
336 PF11734 TilS_C: TilS substrat 24.7 41 0.00089 23.3 1.2 30 61-108 21-50 (74)
337 PHA02558 uvsW UvsW helicase; P 24.5 4.8E+02 0.01 24.6 8.6 65 42-112 345-410 (501)
338 cd03035 ArsC_Yffb Arsenate Red 24.5 1.1E+02 0.0025 22.5 3.6 15 98-112 90-104 (105)
339 TIGR03439 methyl_EasF probable 23.6 5.1E+02 0.011 23.2 8.2 28 55-82 83-115 (319)
340 cd06390 PBP1_iGluR_AMPA_GluR1 23.5 4.2E+02 0.0092 23.7 7.8 85 27-116 41-138 (364)
341 COG1493 HprK Serine kinase of 23.1 4.8E+02 0.01 23.6 7.8 79 17-105 59-138 (308)
342 cd05565 PTS_IIB_lactose PTS_II 23.1 2.2E+02 0.0048 21.0 4.9 25 85-109 60-84 (99)
343 cd04333 ProX_deacylase This CD 22.9 1.7E+02 0.0036 22.6 4.5 34 61-94 2-35 (148)
344 TIGR01626 ytfJ_HI0045 conserve 22.9 2.6E+02 0.0056 23.1 5.8 36 42-82 61-105 (184)
345 PF05621 TniB: Bacterial TniB 22.8 2.6E+02 0.0057 25.1 6.1 68 61-133 135-211 (302)
346 cd02978 KaiB_like KaiB-like fa 22.8 1.1E+02 0.0024 21.5 3.1 28 61-88 20-50 (72)
347 KOG3171|consensus 22.7 1.7E+02 0.0037 25.4 4.7 38 96-133 210-253 (273)
348 cd03082 TRX_Fd_NuoE_W_FDH_beta 22.6 1.1E+02 0.0023 21.2 2.9 26 96-121 45-72 (72)
349 PLN02958 diacylglycerol kinase 22.5 6.7E+02 0.014 23.7 9.5 30 62-91 134-163 (481)
350 PRK03988 translation initiatio 22.5 78 0.0017 25.1 2.5 33 147-189 102-134 (138)
351 cd03022 DsbA_HCCA_Iso DsbA fam 22.0 1.4E+02 0.0031 23.3 4.0 31 44-79 1-35 (192)
352 PF13416 SBP_bac_8: Bacterial 21.9 1.2E+02 0.0025 25.2 3.6 60 63-126 3-62 (281)
353 COG1651 DsbG Protein-disulfide 21.9 1.1E+02 0.0024 25.4 3.4 23 94-116 212-234 (244)
354 TIGR00853 pts-lac PTS system, 21.7 2E+02 0.0044 20.9 4.4 26 86-111 64-89 (95)
355 PF00282 Pyridoxal_deC: Pyrido 21.7 2.4E+02 0.0052 25.6 5.8 70 41-117 139-216 (373)
356 COG2201 CheB Chemotaxis respon 21.6 6.4E+02 0.014 23.2 10.0 83 30-119 12-96 (350)
357 COG0394 Wzb Protein-tyrosine-p 21.5 2E+02 0.0044 22.4 4.7 46 30-75 17-62 (139)
358 cd03130 GATase1_CobB Type 1 gl 21.4 2.2E+02 0.0048 23.3 5.1 55 61-130 14-71 (198)
359 KOG4022|consensus 21.3 5E+02 0.011 21.8 7.0 78 40-123 2-99 (236)
360 CHL00144 odpB pyruvate dehydro 21.3 3.2E+02 0.0069 24.4 6.5 67 42-113 202-270 (327)
361 TIGR00204 dxs 1-deoxy-D-xylulo 20.7 1.8E+02 0.0039 28.5 5.1 66 42-112 496-563 (617)
362 cd05564 PTS_IIB_chitobiose_lic 20.6 1.9E+02 0.0041 20.9 4.1 27 86-112 60-86 (96)
363 cd04911 ACT_AKiii-YclM-BS_1 AC 20.6 97 0.0021 22.0 2.4 24 55-78 13-36 (76)
364 PRK10670 hypothetical protein; 20.5 1.5E+02 0.0032 23.6 3.8 42 62-103 3-50 (159)
365 cd03145 GAT1_cyanophycinase Ty 20.4 5E+02 0.011 21.5 10.8 92 28-130 14-113 (217)
366 PF12261 T_hemolysin: Thermost 20.3 2.5E+02 0.0054 23.2 5.1 70 26-105 99-171 (179)
367 PF13156 Mrr_cat_2: Restrictio 20.3 2.3E+02 0.0049 22.2 4.6 48 26-80 58-108 (129)
368 PRK11892 pyruvate dehydrogenas 20.1 2.4E+02 0.0053 26.7 5.7 65 43-112 342-408 (464)
No 1
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=9e-38 Score=249.93 Aligned_cols=137 Identities=26% Similarity=0.386 Sum_probs=126.4
Q ss_pred cEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeechhHHHHH
Q psy221 43 KVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 43 ~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~del~~l 117 (205)
+||||+++++++ .+||+|.+||++|++++|+|+++||++|++++++|+++++. .++|||||+|++|||+||+++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 589999999999 99999999999999999999999999999999999999875 8999999999999999999999
Q ss_pred HhcccHHHHHhhcCCccccceeecccCCC--CcccCcccCCCCccccC---CCCccccccccceeeEec
Q psy221 118 HQSGELVEQLEKGDQKRKQFILINYISGD--AVRCYECSSAQDPKGED---NCGAYSKFHKERHISVEC 181 (205)
Q Consensus 118 ~e~GeL~~~L~~~~~~~~~~~~~~~gcGg--fv~C~~CsGS~k~~~~~---~~g~~~~~~~~~~~~~~c 181 (205)
|++|+|.++|+.++.. .....|.+||| ||||.+|+||+|++.++ .++.-++.++++|.-|+|
T Consensus 81 ~e~G~L~~lL~~~~~~--~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 81 NESGELRKLLKGIRAR--AGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHcCCHHHHHhhcccc--cCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 9999999999988433 23445889998 89999999999999988 477889999999999988
No 2
>KOG2824|consensus
Probab=100.00 E-value=1e-33 Score=243.23 Aligned_cols=141 Identities=23% Similarity=0.363 Sum_probs=131.7
Q ss_pred CCcEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeechhHHH
Q psy221 41 KSKVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGCDILL 115 (205)
Q Consensus 41 ~~~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~del~ 115 (205)
.+.||||++|+|++ .|+.+|..|+++|++++|.|+|+||++|..+++||+++.|. .++|+|||+|+||||+++|+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 57999999999999 99999999999999999999999999999999999999875 58999999999999999999
Q ss_pred HHHhcccHHHHHhhcCCccccceeecccCCC--CcccCcccCCCCccc--cCCCCccccccccceeeEecCCC
Q psy221 116 KLHQSGELVEQLEKGDQKRKQFILINYISGD--AVRCYECSSAQDPKG--EDNCGAYSKFHKERHISVECNTE 184 (205)
Q Consensus 116 ~l~e~GeL~~~L~~~~~~~~~~~~~~~gcGg--fv~C~~CsGS~k~~~--~~~~g~~~~~~~~~~~~~~c~~~ 184 (205)
+|+|.|+|.++|++++ ......|.+||| |+||..|+||+|++. ++..+.-++-.+++|.-|+|+.+
T Consensus 210 ~LnE~GkL~~lL~~~p---~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~C 279 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKGIP---CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVC 279 (281)
T ss_pred hhhhcchHHHHHhcCC---CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCcc
Confidence 9999999999999986 233356789997 899999999999999 88999999999999999999875
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.96 E-value=1.1e-28 Score=189.95 Aligned_cols=103 Identities=34% Similarity=0.765 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEee
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG 109 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IG 109 (205)
+..+++++++++++||||++|+|..++||||.+|+++|.+++++|.++||..+++.+++|++++|++|+|||||||++||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcccHHHHHhhcCC
Q psy221 110 GCDILLKLHQSGELVEQLEKGDQ 132 (205)
Q Consensus 110 G~del~~l~e~GeL~~~L~~~~~ 132 (205)
|+|++.+|+++|+|.++|+.+++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAA 105 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999998765
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.95 E-value=4.5e-27 Score=175.66 Aligned_cols=95 Identities=54% Similarity=1.038 Sum_probs=91.6
Q ss_pred HHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221 33 KSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 33 ~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d 112 (205)
+++++++++++||||++|+++.++||||.+|+++|+++||+|+++||..+++.+++|++++|++++|||||||++|||+|
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~d 82 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCD 82 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChH
Confidence 67889999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHH
Q psy221 113 ILLKLHQSGELVEQL 127 (205)
Q Consensus 113 el~~l~e~GeL~~~L 127 (205)
++.+|+++|+|.++|
T Consensus 83 dl~~l~~~g~L~~~l 97 (97)
T TIGR00365 83 IIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHCcChHHhC
Confidence 999999999999875
No 5
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.93 E-value=6.7e-26 Score=169.95 Aligned_cols=92 Identities=30% Similarity=0.569 Sum_probs=85.6
Q ss_pred HHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh---HHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221 36 DEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 36 ~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~---~~~eL~~~~g~~tvPqvFI~G~~IGG~d 112 (205)
++++++++|+||++ ++||+|.+++++|++++++|+++||+.+++ .++++.+++|++++|||||||++|||+|
T Consensus 2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 57889999999999 999999999999999999999999998754 5667888889999999999999999999
Q ss_pred HHHHHHhcccHHHHHhhcCC
Q psy221 113 ILLKLHQSGELVEQLEKGDQ 132 (205)
Q Consensus 113 el~~l~e~GeL~~~L~~~~~ 132 (205)
++.+|+++|+|+++|+.+++
T Consensus 77 dl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHHcCCHHHHHHHhCc
Confidence 99999999999999998765
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.93 E-value=7.1e-26 Score=166.58 Aligned_cols=90 Identities=56% Similarity=1.118 Sum_probs=86.6
Q ss_pred HHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHH
Q psy221 35 IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114 (205)
Q Consensus 35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del 114 (205)
+++++++++||||++|+++.++||+|.+++++|+++|++|+++||..+++++++|.+++|+.++|+|||||++|||++++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccHH
Q psy221 115 LKLHQSGELV 124 (205)
Q Consensus 115 ~~l~e~GeL~ 124 (205)
++||++|+|+
T Consensus 81 ~~l~~~g~L~ 90 (90)
T cd03028 81 KEMHESGELQ 90 (90)
T ss_pred HHHHHcCCcC
Confidence 9999999984
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.93 E-value=1.9e-25 Score=170.20 Aligned_cols=97 Identities=22% Similarity=0.416 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC---CeEEEEccC---CHhHHHHHHHHhCCCCccEEeeCC
Q psy221 32 QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLK---DESIRNGIKEYTSWPTIPQVFING 105 (205)
Q Consensus 32 ~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV---~~~e~DI~~---d~~~~~eL~~~~g~~tvPqvFI~G 105 (205)
++++++++++++|+||++ ++||||.+|+++|++++| +|+++||+. +.+.+++|.+.+|+.+||+|||||
T Consensus 3 ~~~v~~~i~~~~V~vys~-----~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVK-----FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEEC-----CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 578899999999999999 999999999999999999 799999986 578899999999999999999999
Q ss_pred eEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221 106 EFVGGCDILLKLHQSGELVEQLEKGDQK 133 (205)
Q Consensus 106 ~~IGG~del~~l~e~GeL~~~L~~~~~~ 133 (205)
++|||+||+++|+++|+|.++|+.+++.
T Consensus 78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 78 TSIGGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred EEEeChHHHHHHHHcCCHHHHHHHcccc
Confidence 9999999999999999999999988764
No 8
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-25 Score=166.31 Aligned_cols=102 Identities=50% Similarity=0.942 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCC-CCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221 29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHD-VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF 107 (205)
Q Consensus 29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~ 107 (205)
++..+++++.++.++||||+||+|..|.|.|+.++.++|..+| ++|..+||..|+++|+.|+++++|||+||+||+|++
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 4578899999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred eechhHHHHHHhcccHHHHHhhc
Q psy221 108 VGGCDILLKLHQSGELVEQLEKG 130 (205)
Q Consensus 108 IGG~del~~l~e~GeL~~~L~~~ 130 (205)
|||.|.+.+|+++|+|+++|+.+
T Consensus 82 vGG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 82 VGGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred eccHHHHHHHHHcchHHHHHHhc
Confidence 99999999999999999999864
No 9
>PTZ00062 glutaredoxin; Provisional
Probab=99.92 E-value=6.1e-25 Score=184.43 Aligned_cols=102 Identities=37% Similarity=0.774 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF 107 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~ 107 (205)
.+++.+++++++++++||||+||++..|+||+|.+++++|++++|+|+++||..+++.+++|++++|++|+|||||||++
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 55699999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred eechhHHHHHHhcccHHHHHhh
Q psy221 108 VGGCDILLKLHQSGELVEQLEK 129 (205)
Q Consensus 108 IGG~del~~l~e~GeL~~~L~~ 129 (205)
|||+|++++|+++|+|.++|..
T Consensus 179 IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 179 IGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred EcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999965
No 10
>KOG1752|consensus
Probab=99.90 E-value=4.1e-23 Score=156.42 Aligned_cols=97 Identities=31% Similarity=0.576 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHhCCCCccEEeeCCeE
Q psy221 31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYTSWPTIPQVFINGEF 107 (205)
Q Consensus 31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G~~ 107 (205)
..+++++++.+++||||++ ++||+|.++|.+|..+++++..++++.+ .+++++|.+++|++|+|+|||+|++
T Consensus 3 ~~~~v~~~i~~~~VVifSK-----s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSK-----SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF 77 (104)
T ss_pred HHHHHHHHhhcCCEEEEEC-----CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence 4567899999999999999 9999999999999999999888888765 5889999999999999999999999
Q ss_pred eechhHHHHHHhcccHHHHHhhcCC
Q psy221 108 VGGCDILLKLHQSGELVEQLEKGDQ 132 (205)
Q Consensus 108 IGG~del~~l~e~GeL~~~L~~~~~ 132 (205)
|||.+++++||.+|+|.++|+.+++
T Consensus 78 iGG~~dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 78 IGGASDLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred EcCHHHHHHHHHcCCHHHHHHHhhc
Confidence 9999999999999999999998754
No 11
>PRK10638 glutaredoxin 3; Provisional
Probab=99.88 E-value=5.6e-22 Score=143.17 Aligned_cols=82 Identities=27% Similarity=0.533 Sum_probs=79.0
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcc
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSG 121 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~G 121 (205)
.+|+||++ ++||+|.+|+++|+++|++|+++||+.+++.++++.+++|..++|+||+||++|||++++.+++++|
T Consensus 2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g 76 (83)
T PRK10638 2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARG 76 (83)
T ss_pred CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcC
Confidence 47999999 9999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred cHHHHHh
Q psy221 122 ELVEQLE 128 (205)
Q Consensus 122 eL~~~L~ 128 (205)
+|.++|+
T Consensus 77 ~l~~~~~ 83 (83)
T PRK10638 77 GLDPLLK 83 (83)
T ss_pred CHHHHhC
Confidence 9999884
No 12
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.87 E-value=6e-22 Score=141.06 Aligned_cols=79 Identities=30% Similarity=0.576 Sum_probs=76.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcccH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGEL 123 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~GeL 123 (205)
|+||++ ++||+|.+|+++|+++|++|+++||+.+++.++++.+++|..++|+|||||++|||++++.+|+++|+|
T Consensus 1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l 75 (79)
T TIGR02181 1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL 75 (79)
T ss_pred CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence 689999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy221 124 VEQL 127 (205)
Q Consensus 124 ~~~L 127 (205)
+++|
T Consensus 76 ~~~l 79 (79)
T TIGR02181 76 DPLL 79 (79)
T ss_pred hhhC
Confidence 9875
No 13
>KOG0911|consensus
Probab=99.86 E-value=2.1e-21 Score=163.32 Aligned_cols=99 Identities=48% Similarity=1.004 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeec
Q psy221 31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110 (205)
Q Consensus 31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG 110 (205)
.++.++.+++.++|+||+||+|..|.|.+.+++..+|++++|+|..+||..|+++|+.|++++.|||+|||||+|+++||
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccC
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcccHHHHHhh
Q psy221 111 CDILLKLHQSGELVEQLEK 129 (205)
Q Consensus 111 ~del~~l~e~GeL~~~L~~ 129 (205)
.|.+++|+++|+|...|++
T Consensus 208 lDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKE 226 (227)
T ss_pred cHHHHHHhhcccHHHHhhc
Confidence 9999999999999999975
No 14
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.86 E-value=2.2e-21 Score=144.03 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=81.8
Q ss_pred cEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeechhHHHHH
Q psy221 43 KVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 43 ~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~del~~l 117 (205)
.|+||++|+++. ..-..|+.++++|++++|+|+++||++|++.+++|++.++. +++|||||+|+||||+||+.+|
T Consensus 1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 389999999998 88999999999999999999999999999999999999864 8999999999999999999999
Q ss_pred HhcccHHHHHh
Q psy221 118 HQSGELVEQLE 128 (205)
Q Consensus 118 ~e~GeL~~~L~ 128 (205)
+++|+|.++|+
T Consensus 81 ~e~g~L~~lLk 91 (92)
T cd03030 81 KENNTLEEFLK 91 (92)
T ss_pred HhCCCHHHHhC
Confidence 99999999985
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.83 E-value=3.9e-20 Score=129.78 Aligned_cols=74 Identities=32% Similarity=0.616 Sum_probs=70.8
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC-CccEEeeCCeEeechhHHHHHHhcc
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP-TIPQVFINGEFVGGCDILLKLHQSG 121 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~-tvPqvFI~G~~IGG~del~~l~e~G 121 (205)
+|+||++ ++||+|.+|+++|++++|+|+++||+.+++.++++.+.+|.. ++|+|||||++|||++++++|+++|
T Consensus 1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 5899999 999999999999999999999999999999999999988887 9999999999999999999999987
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.83 E-value=4.7e-20 Score=129.81 Aligned_cols=73 Identities=26% Similarity=0.421 Sum_probs=70.0
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
.+|+||++ ++||+|.+|+++|+++||+|+++||.++++.+++|.+++|..++|+|||||++|||++|+.+|++
T Consensus 1 ~~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 36999999 99999999999999999999999999999999999999999999999999999999999999864
No 17
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.80 E-value=2.5e-19 Score=127.59 Aligned_cols=79 Identities=39% Similarity=0.676 Sum_probs=72.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCC--eEEEEccCC---HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVP--YDSHDVLKD---ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~--~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
|++|++ ++||+|.+++.+|++++++ |+.++|+.+ ++.++++.+.+|..++|+|||||++|||++++.+++
T Consensus 1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 689999 9999999999999999998 888888764 566778999999999999999999999999999999
Q ss_pred hcccHHHHH
Q psy221 119 QSGELVEQL 127 (205)
Q Consensus 119 e~GeL~~~L 127 (205)
++|+|+++|
T Consensus 76 ~~g~l~~~~ 84 (84)
T TIGR02180 76 KSGKLAELL 84 (84)
T ss_pred HcCChhhhC
Confidence 999999875
No 18
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.1e-19 Score=129.84 Aligned_cols=76 Identities=37% Similarity=0.660 Sum_probs=70.7
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhc
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQS 120 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~ 120 (205)
.|+||++ ++||||.++|++|+++|++|+++|+++++ +.++.+++..|.+++|||||||++|||.+++.+++..
T Consensus 2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 6899999 99999999999999999999999999887 7777777777999999999999999999999999988
Q ss_pred ccH
Q psy221 121 GEL 123 (205)
Q Consensus 121 GeL 123 (205)
+.|
T Consensus 77 ~~l 79 (80)
T COG0695 77 GKL 79 (80)
T ss_pred ccC
Confidence 876
No 19
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.79 E-value=4.9e-19 Score=125.86 Aligned_cols=78 Identities=37% Similarity=0.664 Sum_probs=72.4
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
+|++|++ ++||+|.+++++|++++++|++++++.+ .+.++++++++|.+++|+||++|++|||++++.++.+
T Consensus 1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 5899999 9999999999999999999998888765 5567889999999999999999999999999999999
Q ss_pred cccHHH
Q psy221 120 SGELVE 125 (205)
Q Consensus 120 ~GeL~~ 125 (205)
+|+|++
T Consensus 76 ~g~l~~ 81 (82)
T cd03419 76 SGKLVK 81 (82)
T ss_pred cCCccC
Confidence 999975
No 20
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.78 E-value=1.4e-18 Score=121.89 Aligned_cols=70 Identities=34% Similarity=0.579 Sum_probs=65.0
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
+|+||++ ++||+|.+|+++|++++|+|+++||+.++. .++++.++|..++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 6999999 999999999999999999999999998874 567888889999999999999999999998874
No 21
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.77 E-value=2.1e-18 Score=123.55 Aligned_cols=75 Identities=31% Similarity=0.488 Sum_probs=67.8
Q ss_pred HhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 38 MVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 38 ~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
+.++++|+||++ ++||+|.+++++|+++||+|+++||+.+++. +++++.+|..++|+|||||++|||++++.++
T Consensus 4 ~~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 456789999999 9999999999999999999999999887654 5677788999999999999999999999876
Q ss_pred H
Q psy221 118 H 118 (205)
Q Consensus 118 ~ 118 (205)
.
T Consensus 78 l 78 (79)
T TIGR02190 78 L 78 (79)
T ss_pred h
Confidence 3
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.75 E-value=1.1e-17 Score=114.21 Aligned_cols=72 Identities=43% Similarity=0.874 Sum_probs=69.1
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
+|++|++ ++||+|.+++.+|++++++|+++|+..+++.+++|++++|..++|++|+||++|||++++++|++
T Consensus 1 ~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSK-----STCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence 5899999 99999999999999999999999999999999999999999999999999999999999999874
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.75 E-value=8.8e-18 Score=122.45 Aligned_cols=73 Identities=22% Similarity=0.464 Sum_probs=65.8
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCC--CCccEEeeCCeEeechhHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSW--PTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~--~tvPqvFI~G~~IGG~del~~ 116 (205)
|+||++ ++||+|.+|+++|++++ ++|+++||..+...+++|.+.+|. .++|+|||||++|||++++.+
T Consensus 2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence 799999 99999999999999984 679999998776667788888886 799999999999999999999
Q ss_pred HHhcc
Q psy221 117 LHQSG 121 (205)
Q Consensus 117 l~e~G 121 (205)
+++++
T Consensus 77 ~~~~~ 81 (86)
T TIGR02183 77 LVKEN 81 (86)
T ss_pred HHHhc
Confidence 98764
No 24
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.75 E-value=1.2e-17 Score=120.82 Aligned_cols=73 Identities=21% Similarity=0.459 Sum_probs=67.4
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHh-----CCCCeEEEEccCCHhHHHHHHHHhCC--CCccEEeeCCeEeechhHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRM-----HDVPYDSHDVLKDESIRNGIKEYTSW--PTIPQVFINGEFVGGCDILL 115 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~-----~gV~~~e~DI~~d~~~~~eL~~~~g~--~tvPqvFI~G~~IGG~del~ 115 (205)
+|+||++ ++||+|.+|+++|++ .+++|+++||+.++..+++|.+..|+ .++|+|||||++|||++|+.
T Consensus 2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence 6999999 999999999999999 89999999999887778889988886 79999999999999999999
Q ss_pred HHHhc
Q psy221 116 KLHQS 120 (205)
Q Consensus 116 ~l~e~ 120 (205)
++++.
T Consensus 77 ~~~~~ 81 (85)
T PRK11200 77 AYVKE 81 (85)
T ss_pred HHHHH
Confidence 98764
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.70 E-value=6.3e-17 Score=109.66 Aligned_cols=60 Identities=40% Similarity=0.773 Sum_probs=58.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV 108 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I 108 (205)
|+||++ ++||+|.+++++|+++|++|+++||+.+++.+++|++++|..++|+|||||++|
T Consensus 1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999 999999999999999999999999999999999999999999999999999987
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.66 E-value=5.1e-16 Score=142.48 Aligned_cols=85 Identities=21% Similarity=0.436 Sum_probs=74.1
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--------HhCCCCccEEeeCCeEeechhH
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--------YTSWPTIPQVFINGEFVGGCDI 113 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--------~~g~~tvPqvFI~G~~IGG~de 113 (205)
.+|+||++ ++||+|.++|++|+++||+|+++||+.++...+.+.+ .+|..++|||||||++|||+++
T Consensus 2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 47999999 9999999999999999999999999988754443222 3588999999999999999999
Q ss_pred HHHHHhcccHHHHHhhcCCc
Q psy221 114 LLKLHQSGELVEQLEKGDQK 133 (205)
Q Consensus 114 l~~l~e~GeL~~~L~~~~~~ 133 (205)
+++ .+|+|.++|++.+..
T Consensus 77 l~~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 77 LMA--RAGEVIARVKGSSLT 94 (410)
T ss_pred HHH--HhCCHHHHhcCCccc
Confidence 988 899999999987653
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.59 E-value=4.7e-15 Score=104.12 Aligned_cols=63 Identities=14% Similarity=0.344 Sum_probs=58.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe-Eeechh
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE-FVGGCD 112 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~-~IGG~d 112 (205)
|+||++ ++||+|.+++++|+++||+|+++||..+++.++++++. |..++|+|+++|+ +|||++
T Consensus 1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCcccCEEEECCCcEEeccC
Confidence 589999 99999999999999999999999999999999999864 8899999999775 999997
No 28
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=104.44 Aligned_cols=64 Identities=9% Similarity=0.252 Sum_probs=60.7
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d 112 (205)
+|+||++ ++||+|.+++++|+++||+|+++||+.+++..++++. .|..++|+|++++..++|++
T Consensus 2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 6999999 9999999999999999999999999999998888877 48899999999999999997
No 29
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.48 E-value=2.2e-13 Score=102.42 Aligned_cols=86 Identities=24% Similarity=0.432 Sum_probs=67.8
Q ss_pred cEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC---------CCCccEEeeCCeEeechh
Q psy221 43 KVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS---------WPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 43 ~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g---------~~tvPqvFI~G~~IGG~d 112 (205)
.|.||.+|+.+. .-=..+.++..+|+.++|+|+++||.++++.|+.+++..| .+-.||||+|++|+|++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 578898876544 3345789999999999999999999999999999999873 334589999999999999
Q ss_pred HHHHHHhcccHHHHHh
Q psy221 113 ILLKLHQSGELVEQLE 128 (205)
Q Consensus 113 el~~l~e~GeL~~~L~ 128 (205)
++.+++|+++|.+.|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999986
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.36 E-value=4.6e-12 Score=86.73 Aligned_cols=65 Identities=23% Similarity=0.407 Sum_probs=60.8
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d 112 (205)
.|++|+. ++||+|.+++.+|++.+++|.++|++.+++..+++.+..|..++|.++++|+.+.|++
T Consensus 1 ~i~lf~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTT-----PWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcC-----CCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence 3789999 9999999999999999999999999999888888888889999999999999998875
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.32 E-value=1.1e-11 Score=84.81 Aligned_cols=66 Identities=26% Similarity=0.539 Sum_probs=61.5
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDI 113 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~de 113 (205)
+|++|+. ++||+|.+++.+|++.+++|..+|++.++...+++.++.+..++|+|+++|+.++|.+.
T Consensus 1 ~v~l~~~-----~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTK-----PDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeC-----CCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 4899999 99999999999999999999999999988888899988888899999999999999874
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.22 E-value=7.9e-11 Score=81.98 Aligned_cols=65 Identities=20% Similarity=0.406 Sum_probs=57.5
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEee-CCeEeechh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFI-NGEFVGGCD 112 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI-~G~~IGG~d 112 (205)
+|+||+. ++||+|.+++.+|++++++|+.+|++.++...+++.++. +..++|+|++ ||+.+...+
T Consensus 1 ~v~ly~~-----~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGT-----TWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEEC-----CCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 4899999 999999999999999999999999999988888888886 8889999977 567776554
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.99 E-value=1.2e-09 Score=74.76 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=49.8
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEee
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG 109 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IG 109 (205)
.|++|++ ++||+|.+++.+|+++ ++++..+|++.+++ +.+..|..++|+++|+|++++
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 5899999 9999999999999875 68899999987754 555678889999999999875
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.85 E-value=2.7e-08 Score=70.34 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=60.0
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC--CeEeechhHHHHHHh
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN--GEFVGGCDILLKLHQ 119 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~--G~~IGG~del~~l~e 119 (205)
++||+. +.||+|.+++.+|+.+|++|+++++..++...+++.++++..++|++..+ |..+.+.+.+.+..+
T Consensus 2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 679999 99999999999999999999999998776567788888888899999773 567788777766543
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.75 E-value=4.5e-08 Score=65.13 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=57.7
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
.+|+. ++||+|.+++.+|+.++++|+.++++.++....++++.++..++|.+.++|..++....+.+.
T Consensus 2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 57888 899999999999999999999999876544333677788889999999999999988876654
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.74 E-value=1.1e-07 Score=66.69 Aligned_cols=69 Identities=20% Similarity=0.468 Sum_probs=55.6
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC----CeEeechhHHHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN----GEFVGGCDILLKLH 118 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~----G~~IGG~del~~l~ 118 (205)
++.||+. +.||+|.+++.+|+..||+|++++++.. .+.++ +..+..++|++.++ |+.+.....+.+..
T Consensus 1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCch--hHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 4789999 9999999999999999999999998542 23445 34678899999987 77787777776654
Q ss_pred h
Q psy221 119 Q 119 (205)
Q Consensus 119 e 119 (205)
+
T Consensus 73 ~ 73 (77)
T cd03040 73 K 73 (77)
T ss_pred H
Confidence 3
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.68 E-value=1.6e-07 Score=64.99 Aligned_cols=68 Identities=12% Similarity=0.237 Sum_probs=55.3
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHHHh
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKLHQ 119 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l~e 119 (205)
.||.. +.||+|.+++.+|...|++|++++++..+.. ...+..+..++|+++++ |..+++...+.+..+
T Consensus 2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 47888 8999999999999999999999988755322 22345677899999997 889999998887644
No 38
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.51 E-value=1.5e-07 Score=71.72 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=43.2
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPT 97 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~t 97 (205)
|+||+. ++||+|++|+++|+++|++|+++|+..++..+++|.++.+...
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~ 49 (111)
T cd03036 1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSG 49 (111)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcC
Confidence 579999 9999999999999999999999999999888888887665433
No 39
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.50 E-value=6.8e-07 Score=84.14 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=76.8
Q ss_pred cCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCC
Q psy221 21 NAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSW 95 (205)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~ 95 (205)
+......+++..+.++++-+...|.+|.+ ++||+|..|++.++++. |..+.+|..+.++ +.+..+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v 168 (515)
T TIGR03140 98 GGHGPKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGI 168 (515)
T ss_pred cCCCCCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCC
Confidence 33345568888888888878888999999 99999999999997664 4455555544443 3344577
Q ss_pred CCccEEeeCCeEee-chhHHHHHHhcccHHHH----H--hhcCCccccceeecccCCC
Q psy221 96 PTIPQVFINGEFVG-GCDILLKLHQSGELVEQ----L--EKGDQKRKQFILINYISGD 146 (205)
Q Consensus 96 ~tvPqvFI~G~~IG-G~del~~l~e~GeL~~~----L--~~~~~~~~~~~~~~~gcGg 146 (205)
.+||.+||||+.++ |.....++.+ .|.+. . .......+|.++||+|.+|
T Consensus 169 ~~VP~~~i~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAG 224 (515)
T TIGR03140 169 QGVPAVFLNGEEFHNGRMDLAELLE--KLEETAGVEAASALEQLDPYDVLVVGGGPAG 224 (515)
T ss_pred cccCEEEECCcEEEecCCCHHHHHH--HHhhccCcccchhccccCCCCEEEECCCHHH
Confidence 79999999997653 3333322211 11111 0 0122457889999999987
No 40
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.45 E-value=1.2e-06 Score=82.44 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=78.2
Q ss_pred cCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCC
Q psy221 21 NAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSW 95 (205)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~ 95 (205)
+......+++..+.++++-+...|.+|.+ ++||+|..+++.+++. .|..+-+|..+.++. .+..+.
T Consensus 97 ~~~~~~l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~----~~~~~v 167 (517)
T PRK15317 97 GGHPPKLDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDE----VEARNI 167 (517)
T ss_pred cCCCCCCCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhH----HHhcCC
Confidence 34445668889999998888888999999 9999999999998765 455666666555543 334577
Q ss_pred CCccEEeeCCeEee-chh---HHHHHHhcc-cHHHHHhhcCCccccceeecccCCC
Q psy221 96 PTIPQVFINGEFVG-GCD---ILLKLHQSG-ELVEQLEKGDQKRKQFILINYISGD 146 (205)
Q Consensus 96 ~tvPqvFI~G~~IG-G~d---el~~l~e~G-eL~~~L~~~~~~~~~~~~~~~gcGg 146 (205)
.+||.+||||+.+. |.. ++.+...+. .....-.......+|.++||+|.+|
T Consensus 168 ~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaG 223 (517)
T PRK15317 168 MAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAG 223 (517)
T ss_pred cccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHH
Confidence 79999999997653 322 222222211 0000000122346899999999987
No 41
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.44 E-value=3.1e-07 Score=68.82 Aligned_cols=48 Identities=23% Similarity=0.446 Sum_probs=42.9
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP 96 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~ 96 (205)
|+||++ ++|++|++|+++|+++|++|+++||..++...++|.++.+..
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 579999 999999999999999999999999998887788888876543
No 42
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.42 E-value=1.6e-06 Score=63.00 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=58.7
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL 117 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l 117 (205)
...++||+. +.||+|.+++.+|+.+|++|+.++++... ..+++.+.+...++|++.++ |..+.....+.+.
T Consensus 16 ~~~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 456999999 99999999999999999999999987543 23557777788899999998 7888777766654
No 43
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.41 E-value=1.9e-06 Score=59.31 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=54.9
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
++||+. ++||+|.+++.+|+..|++|++++++.... ..++++.....++|.+..+|..+.....+.+..
T Consensus 1 ~~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDNP-PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCCC-CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 368988 999999999999999999999998875422 356667777789999988887777666665543
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.38 E-value=2.2e-06 Score=59.29 Aligned_cols=66 Identities=11% Similarity=0.240 Sum_probs=54.0
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLK 116 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~ 116 (205)
++|+. ++||+|.+++.+|+.+|++|+.++++.... .+++.++....++|.+..+ |..+.....+.+
T Consensus 2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 68888 999999999999999999999998875432 3577778888899999996 887766665544
No 45
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.36 E-value=1.7e-06 Score=63.43 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC
Q psy221 31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING 105 (205)
Q Consensus 31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G 105 (205)
..+.++++-+.-.|.+|.. ++|++|..+++++++. ++++..+|++.+++ +.+..|-..+|.++|||
T Consensus 3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~V~~vPt~vidG 73 (89)
T cd03026 3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERGIMSVPAIFLNG 73 (89)
T ss_pred HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcCCccCCEEEECC
Confidence 3455666555668899999 9999999999998654 68899999987753 34455777899999999
Q ss_pred eEee
Q psy221 106 EFVG 109 (205)
Q Consensus 106 ~~IG 109 (205)
+.++
T Consensus 74 ~~~~ 77 (89)
T cd03026 74 ELFG 77 (89)
T ss_pred EEEE
Confidence 8664
No 46
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.34 E-value=4.7e-06 Score=59.82 Aligned_cols=53 Identities=23% Similarity=0.469 Sum_probs=43.7
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCC----CCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHD----VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING 105 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g----V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G 105 (205)
+|++|++ ++|+.|..|+++|+... +.++.+||+.|++ |.+.++. .+|++.++|
T Consensus 1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence 5899999 99999999999999654 5689999998876 5556664 799999999
No 47
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.32 E-value=2.8e-06 Score=59.58 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=58.6
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 46 VFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 46 lYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
||.. +.||+|.+++-+|+.+||+|+.+++..... ..++.++....++|.+..||..+.+...+.+..+
T Consensus 1 Ly~~-----~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGF-----PGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEE-----TTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCc-----CCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 5777 899999999999999999999999875543 6778888888999999999999998887776543
No 48
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.30 E-value=1.6e-06 Score=68.10 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=42.1
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
|+||+. ++|++|++|+++|+++||+|+++|+..++..+++|.++..
T Consensus 2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence 789999 9999999999999999999999999999888888877653
No 49
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.30 E-value=2.8e-06 Score=58.18 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=53.3
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l 117 (205)
.||+. ++||+|.+++.+|+..|++|+.++++.. ....+++.+.....++|.+.+ ||..+.....+.+.
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 68888 9999999999999999999998887642 233456778888889999998 55666665555443
No 50
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.28 E-value=4.5e-06 Score=57.65 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=55.2
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
.||+. +.||+|.+++.+|+..|++|+.++++. .....+++.+.....++|.+..+|..+-....+.+.
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 68888 999999999999999999999988864 333457788887778999999888777666655543
No 51
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.21 E-value=7.8e-06 Score=57.28 Aligned_cols=55 Identities=20% Similarity=0.420 Sum_probs=43.5
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHh----CC--CCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRM----HD--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE 106 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~ 106 (205)
.|++|+. +||++|..++.+|++ ++ +++..+|++.+++. .+..|-.++|.++++|+
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHcCCccCCEEEECCE
Confidence 4789999 999999999999864 34 56778887766643 34467889999999997
No 52
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.20 E-value=9.7e-06 Score=55.54 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=54.6
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~ 116 (205)
++|.. +.||+|.+++.+|+..|++|++++++.. ....+++.+.....++|.+..+|..+.....+.+
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 67888 9999999999999999999999998742 3344667777777899999999988877666554
No 53
>KOG4023|consensus
Probab=98.19 E-value=5.7e-06 Score=61.96 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=70.6
Q ss_pred CcEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--------HhCCCCccEEeeCCeEeechh
Q psy221 42 SKVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--------YTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 42 ~~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--------~~g~~tvPqvFI~G~~IGG~d 112 (205)
..|.+|+++.++. ..=--=..+..+|+.+.|.|+++||....+.++++.. ..|.+.-||||-+++|.|++|
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 4577888865432 1111224678899999999999999887666555543 457888999999999999999
Q ss_pred HHHHHHhcccHHHHHhhcCC
Q psy221 113 ILLKLHQSGELVEQLEKGDQ 132 (205)
Q Consensus 113 el~~l~e~GeL~~~L~~~~~ 132 (205)
...+..|+.-|.+.|+-++.
T Consensus 82 ~F~ea~E~ntl~eFL~lap~ 101 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGLAPP 101 (108)
T ss_pred HHHHHHHHHHHHHHHccCCC
Confidence 99999999999999987643
No 54
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.15 E-value=4.7e-06 Score=63.78 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=41.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
|.||+. ++||+|++|+++|+++||+|+++|+.+++..+++|.++..
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 579999 9999999999999999999999999999888888877653
No 55
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.14 E-value=5.8e-06 Score=63.16 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=41.6
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
|.||+. ++|+.|++|+++|+++||+|+++|+..++.-+++|.++..
T Consensus 2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 789999 9999999999999999999999999998877788877654
No 56
>KOG3029|consensus
Probab=98.08 E-value=1.5e-05 Score=70.18 Aligned_cols=67 Identities=25% Similarity=0.560 Sum_probs=55.2
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
.+++|.- ++||+|.+|+++|+-+|++|..++| +|-.|++++ ++....||.+.++|+-.-...-+..+
T Consensus 90 ~l~LyQy-----etCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~ 156 (370)
T KOG3029|consen 90 DLVLYQY-----ETCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISL 156 (370)
T ss_pred eEEEEee-----ccCchHHHHHHHHhhcCCceEEEEe--cchhhhhcc-ccccccccEEEeccceechhHHHHHH
Confidence 7999999 9999999999999999999999988 466667766 55788999999998855555444444
No 57
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.07 E-value=7.7e-06 Score=64.28 Aligned_cols=47 Identities=13% Similarity=0.319 Sum_probs=42.3
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW 95 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~ 95 (205)
|+||+. ++|+.|++|+++|+++||+|+++|+..++.-.++|..+...
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 789999 99999999999999999999999999988777888776543
No 58
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.05 E-value=8.9e-06 Score=63.99 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
|+||+. ++|+.|++|+++|+++||+|+++|+..++.-.++|.++.
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 789999 999999999999999999999999998877677777664
No 59
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.04 E-value=8.1e-06 Score=61.73 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=40.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
|+||+. ++|+.|++|+++|+++|++|+++|+.+++--.++|.++..
T Consensus 1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 579999 9999999999999999999999999998776777776653
No 60
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.96 E-value=7.3e-05 Score=51.67 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
+.||+|.+++.+|+..|++|+.++++... .+....+|.+..+|+.+.+...+.+..+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 68999999999999999999999987532 4456689999999999998888776544
No 61
>PHA02125 thioredoxin-like protein
Probab=97.95 E-value=4.1e-05 Score=53.86 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV 108 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I 108 (205)
|++|+. +||++|+.++.+|++.. +..++|+.++. .++.+..+-..+|.+. +|+.+
T Consensus 2 iv~f~a-----~wC~~Ck~~~~~l~~~~--~~~~~vd~~~~--~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGA-----EWCANCKMVKPMLANVE--YTYVDVDTDEG--VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHh--heEEeeeCCCC--HHHHHHcCCceeCeEE-CCEEE
Confidence 788999 99999999999998654 45555554432 3566666788999986 67544
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.95 E-value=6e-05 Score=57.25 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=47.3
Q ss_pred HHHH-HHHHHhcCCcEEEE-EeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221 30 DVQK-SIDEMVKKSKVVVF-MKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102 (205)
Q Consensus 30 ~~~~-~l~~~~~~~~VvlY-sk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF 102 (205)
++.+ ..+++.+...+++| +. +||++|+.++.+|++.. +.+..+|++.++ ++.+..+-.++|.++
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f~a-----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~~vPt~~ 80 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFSSK-----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVERVPTTI 80 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEeCC-----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCCcCCEEE
Confidence 3444 33445555667776 45 89999999999997553 568888888765 456667888999998
Q ss_pred e
Q psy221 103 I 103 (205)
Q Consensus 103 I 103 (205)
+
T Consensus 81 i 81 (113)
T cd02975 81 F 81 (113)
T ss_pred E
Confidence 8
No 63
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.94 E-value=1.8e-05 Score=60.72 Aligned_cols=47 Identities=13% Similarity=0.328 Sum_probs=41.2
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
.|+||+. +.|+.|++|+++|+++|++|+++|+..++--.++|+++..
T Consensus 1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 3789999 9999999999999999999999999988766677776643
No 64
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.87 E-value=5.4e-05 Score=53.55 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=38.5
Q ss_pred CCChHHHHH----HHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221 55 PRCGFSNAV----VQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV 108 (205)
Q Consensus 55 ~~Cp~C~~a----k~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I 108 (205)
+|||.|+.+ ++++++++++++.++|+..++ .. ..|..++|.+++||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~-~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----IL-EAGVTATPGVAVDGELV 60 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HH-HcCCCcCCEEEECCEEE
Confidence 699999999 667788899999999873222 22 25888999999999754
No 65
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.83 E-value=0.00016 Score=50.11 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=57.0
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
+.+|.. +.||+|.+++-+|...|++|+.+.++... ...+++.++....++|.+..+|..+.....+.+..+
T Consensus 2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 578888 89999999999999999999998876532 234567777778899999988888877777666543
No 66
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.81 E-value=0.00015 Score=50.22 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC-CCCccEEeeCCeEeechhHHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS-WPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g-~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
.+|.. +.||+|.+++-+|+..|++|+.++++... ...+++++.. ..++|.+..+|..+.....+.+..
T Consensus 2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL 70 (74)
T cd03058 2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASNPVHKKIPVLLHNGKPICESLIIVEYI 70 (74)
T ss_pred EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence 57877 89999999999999999999998876532 1234555554 378999988887777776665543
No 67
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.80 E-value=0.0003 Score=52.08 Aligned_cols=77 Identities=16% Similarity=0.317 Sum_probs=59.7
Q ss_pred CcEEEEEeeCCC---CCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221 42 SKVVVFMKGVPE---APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 42 ~~VvlYsk~~~~---~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
..+.+|.+..+. ...||+|++++-+|...||+|+..+|+....- +.+.++.-...+|.+..+|..|...+.+.+..
T Consensus 4 p~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p-~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 4 PEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP-EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CcEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCC-HHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 457778775433 27899999999999999999999988754321 45777776778999998898888888777764
Q ss_pred h
Q psy221 119 Q 119 (205)
Q Consensus 119 e 119 (205)
+
T Consensus 83 d 83 (91)
T cd03061 83 E 83 (91)
T ss_pred H
Confidence 4
No 68
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.73 E-value=0.00018 Score=50.45 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=55.4
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
+++|.. +.|+.|.+++-+|++.|++|+.++++.. .....++.++....++|.+..||..+.....+.+.
T Consensus 1 ~~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 467888 8999999999999999999999887643 22345688888888999999888887777666554
No 69
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.68 E-value=0.00022 Score=68.01 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=62.5
Q ss_pred hhcCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHH----hC-CCCeEEEEccCCHhHHHHHHHHh
Q psy221 19 FHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR----MH-DVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~-gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
..+......+++..+.++++-+...|.+|.. ++||+|.++.+.++ .+ +|..+.+|+...++ +.+..
T Consensus 455 ~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~ 525 (555)
T TIGR03143 455 NAAGPGQPLGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEY 525 (555)
T ss_pred HhcCCCCCCCHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhC
Confidence 3344455668888899888877778999999 99999999888764 34 68899999887764 44455
Q ss_pred CCCCccEEeeCCeE
Q psy221 94 SWPTIPQVFINGEF 107 (205)
Q Consensus 94 g~~tvPqvFI~G~~ 107 (205)
+-.++|.++|||+.
T Consensus 526 ~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 526 GIMSVPAIVVDDQQ 539 (555)
T ss_pred CceecCEEEECCEE
Confidence 77899999999963
No 70
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.67 E-value=0.0004 Score=48.30 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=55.6
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
++++|.. +.++.|.+++-+|...|++|+.+.++.+ ...++++......++|.+..+|..+.....+.+..
T Consensus 1 ~~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 1 PYTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred CcEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 3577877 7899999999999999999999988652 33445666666779999999998888777766654
No 71
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.66 E-value=0.00024 Score=48.61 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=53.1
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
++|.. ..++.|.+++.+|+..|++|+.+.++.. ....+++.+.....++|.+..+|..+.....+.+.
T Consensus 2 ~L~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSY-----FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecC-----CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 46766 7889999999999999999999887653 22345677777788999999998888766665554
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.62 E-value=0.00043 Score=48.85 Aligned_cols=48 Identities=27% Similarity=0.493 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHH----HhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221 55 PRCGFSNAVVQIL----RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF 107 (205)
Q Consensus 55 ~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~ 107 (205)
++||+|..+.+++ ..++++++.+|+ .+. +++ ...|-.++|.++|||+.
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~---~~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDF---EEI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH---HHH-HHTT-SSSSEEEETTEE
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH---HHH-HHcCCCCCCEEEECCEE
Confidence 6799999777755 567888988887 332 344 55688999999999984
No 73
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.58 E-value=0.00034 Score=48.21 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=51.0
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHh--CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRM--HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~--~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l 117 (205)
.+|.. +.||+|.+++-+|+. .|++|+.+.++... ...++.+.....++|.+.. ||..+.....+.+.
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPWS-DDESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCccc-CChHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 57777 899999999999999 89999999886422 2245566667789999985 67777666655543
No 74
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.58 E-value=0.00057 Score=47.69 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=51.6
Q ss_pred EEEEEeeC-CCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 44 VVVFMKGV-PEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 44 VvlYsk~~-~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
++||.... .+. +.+|+|.+++.+|+..|++|+.++++. +..+...++|.+..+|+.+.....+.+..+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 46676521 122 468999999999999999999988753 145567789999999999988887766543
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.57 E-value=0.00059 Score=57.24 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=51.9
Q ss_pred CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221 26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ 100 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq 100 (205)
..+++..+.++++-+.-.|++|+. +|||+|..++.+|+.+ .|.+..+|++.+++ +.+..+-..+|.
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPt 189 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPK 189 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCE
Confidence 335566666666444456677888 9999999999999764 35667778777664 444567789999
Q ss_pred EeeCCe
Q psy221 101 VFINGE 106 (205)
Q Consensus 101 vFI~G~ 106 (205)
++++++
T Consensus 190 l~i~~~ 195 (215)
T TIGR02187 190 IVINKG 195 (215)
T ss_pred EEEecC
Confidence 999753
No 76
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.56 E-value=0.00047 Score=47.44 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
++|.. +.++.|.+++-+|+..|++|+.++++.......++.......++|.+..+|..+.....+.+.
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 57777 789999999999999999999998865332223355566677999999988887776665554
No 77
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.56 E-value=0.0006 Score=52.64 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHhcC-Cc-EEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEccCCH--h-----HHHHHHHHhC----CCC
Q psy221 35 IDEMVKK-SK-VVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVLKDE--S-----IRNGIKEYTS----WPT 97 (205)
Q Consensus 35 l~~~~~~-~~-VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~--~-----~~~eL~~~~g----~~t 97 (205)
+.+.++. .. |+.|+. +|||+|+.+.-.|. +.++++-.+|++.+. + -..++.+..+ -..
T Consensus 16 ~~~~i~~~~~~iv~f~~-----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 16 ALEALDKKETATFFIGR-----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred HHHHHHcCCcEEEEEEC-----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 4555543 44 555666 99999999777764 456889999998653 1 1223334333 335
Q ss_pred ccEEe--eCCeEeech
Q psy221 98 IPQVF--INGEFVGGC 111 (205)
Q Consensus 98 vPqvF--I~G~~IGG~ 111 (205)
+|.++ -+|+.++..
T Consensus 91 ~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 91 TPTFVHITDGKQVSVR 106 (122)
T ss_pred CCEEEEEeCCeEEEEE
Confidence 89884 488766544
No 78
>PHA02278 thioredoxin-like protein
Probab=97.55 E-value=0.00079 Score=50.60 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=45.9
Q ss_pred hcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeEe
Q psy221 39 VKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEFV 108 (205)
Q Consensus 39 ~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~I 108 (205)
.+..+|+|+... +||+.|+.+..+|++. .+++..+||+.++....++.+..+-.++|.+. -||+.+
T Consensus 12 ~~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 12 RQKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred hCCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 346667665543 9999999999887543 35688888887643244566666777888874 488755
No 79
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00018 Score=55.55 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=41.0
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
.|+||.. +.|.-|++|+++|+++||+|+++|+..++--+++|.++.
T Consensus 2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 4889999 999999999999999999999999998877777777654
No 80
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.51 E-value=0.00045 Score=50.80 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=43.1
Q ss_pred HHHHhcCCc-EE-EEEeeCCCCCCChHHHHHHHHH------H-hC--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 35 IDEMVKKSK-VV-VFMKGVPEAPRCGFSNAVVQIL------R-MH--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 35 l~~~~~~~~-Vv-lYsk~~~~~~~Cp~C~~ak~lL------~-~~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
+.++++.++ |+ .|.. +||++|+.....+ . .+ ++.+-.+|++.+.....++....+..++|.+++
T Consensus 4 ~~~~~~~~k~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 4 LAQALAQGKPVFVDFTA-----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHcCCeEEEEEEc-----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 445555443 44 4666 9999999987543 1 11 566777888776555567777778889998854
No 81
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.49 E-value=0.00076 Score=47.48 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=52.8
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeC---CeEeechhHHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFIN---GEFVGGCDILLKL 117 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~---G~~IGG~del~~l 117 (205)
+.||.. +. |+|.+++.+|+..|++|+.+.++. .....+++.++....++|.+..+ |..+.....+.+.
T Consensus 2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y 74 (81)
T cd03048 2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLY 74 (81)
T ss_pred eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence 578877 76 999999999999999999887763 23344667777777899999887 7777666665554
No 82
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.43 E-value=0.00032 Score=54.88 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=40.1
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
.++||.. +.|.-|++|+++|+++||+|+++|+..++--.++|..+.
T Consensus 2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l 47 (126)
T TIGR01616 2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF 47 (126)
T ss_pred eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence 4789999 999999999999999999999999988766666666654
No 83
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.42 E-value=0.00059 Score=56.81 Aligned_cols=68 Identities=13% Similarity=0.288 Sum_probs=52.9
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHHhc
Q psy221 46 VFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLHQS 120 (205)
Q Consensus 46 lYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~e~ 120 (205)
+|.. ..||+|.+++-+|+.+|++|+.+++..+.. .. ..+.....++|++. .||..+.+...+.+..++
T Consensus 2 Ly~~-----~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIY-----DHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecC-----CCCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 5766 889999999999999999999998865432 12 24555677999997 788889888887775443
No 84
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00054 Score=49.12 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=47.2
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHH-----------hCCCCccEEeeCC-eEeech
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEY-----------TSWPTIPQVFING-EFVGGC 111 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~-----------~g~~tvPqvFI~G-~~IGG~ 111 (205)
++|.. ..||+|..+++.|++++|.|+++||... +.+++.|+-. .|+..+|.+.+++ +.|=|
T Consensus 5 ~lfgs-----n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~- 78 (85)
T COG4545 5 KLFGS-----NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG- 78 (85)
T ss_pred eeecc-----ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-
Confidence 67777 7999999999999999999999999765 3333333211 2667899998854 54444
Q ss_pred hHHH
Q psy221 112 DILL 115 (205)
Q Consensus 112 del~ 115 (205)
+|+.
T Consensus 79 ~Dl~ 82 (85)
T COG4545 79 DDLS 82 (85)
T ss_pred chhh
Confidence 4443
No 85
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.40 E-value=0.00063 Score=48.36 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=53.5
Q ss_pred EEEEeeC-CCC-CCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHHHh
Q psy221 45 VVFMKGV-PEA-PRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKLHQ 119 (205)
Q Consensus 45 vlYsk~~-~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l~e 119 (205)
++|+..- .+. +.+|+|.+++.+|...|++|+.+.++.. +....++ +......+|.+..+ |..+.+...+.+..+
T Consensus 2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 4554432 223 7899999999999999999998877643 2223344 45667899999888 888888777776543
No 86
>PRK10026 arsenate reductase; Provisional
Probab=97.39 E-value=0.00038 Score=55.54 Aligned_cols=47 Identities=17% Similarity=0.385 Sum_probs=41.3
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
..++||.. +.|.-|++|+++|+++|++|+++|+..++--.++|..+.
T Consensus 2 ~~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l 48 (141)
T PRK10026 2 SNITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI 48 (141)
T ss_pred CEEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence 46899999 999999999999999999999999988876666776654
No 87
>PRK10387 glutaredoxin 2; Provisional
Probab=97.38 E-value=0.00084 Score=55.06 Aligned_cols=69 Identities=10% Similarity=0.232 Sum_probs=53.0
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEE-eeCCeEeechhHHHHHHhc
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV-FINGEFVGGCDILLKLHQS 120 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv-FI~G~~IGG~del~~l~e~ 120 (205)
.+|+. +.||+|.+++-+|+..||+|+.++++..+.. .. .+..+..++|++ .-||..+.....|.+..++
T Consensus 2 ~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 2 KLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred EEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 57887 8999999999999999999999998654322 22 345566799999 4578888888777665443
No 88
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.38 E-value=0.00033 Score=53.54 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=40.3
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
|+||.. ++|.-|++|+++|+++|++|+++|+.+++--.++|.++..
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 578999 9999999999999999999999999988766777776653
No 89
>PRK10853 putative reductase; Provisional
Probab=97.37 E-value=0.00033 Score=54.10 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
|+||.. +.|.-|++|+++|+++|++|+++|+..++--.++|.++..
T Consensus 2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 789999 9999999999999999999999999888766677776653
No 90
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.35 E-value=0.00037 Score=53.04 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=38.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
|+||.. +.|.-|++|+++|++++++|+++|+.+++--.++|..+.
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 578999 999999999999999999999999988765556666543
No 91
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.30 E-value=0.0009 Score=41.94 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=43.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHH-----hCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILR-----MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING 105 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~-----~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G 105 (205)
+++|.. .+|++|.+++..|. ..++.+..+|++......+. ....+...+|.+++.+
T Consensus 1 l~~~~~-----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYA-----PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEEC-----CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCCCccccEEEEEe
Confidence 356777 89999999999999 56788999999887765544 2335667899998865
No 92
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.25 E-value=0.0028 Score=46.17 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=40.4
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHh------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRM------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV 108 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I 108 (205)
++|.. +||+.|..+...|++ .++.+..+|++.++++ ....+-..+|.+++ +|+.+
T Consensus 18 v~f~a-----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 18 VLYTS-----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEC-----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHCCCeeccEEEEEECCeEE
Confidence 44656 999999999999866 3467888888877654 34446678998865 77655
No 93
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.25 E-value=0.00077 Score=46.66 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHhCCCCeEEEEccC--C-HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221 56 RCGFSNAVVQILRMHDVPYDSHDVLK--D-ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ 119 (205)
Q Consensus 56 ~Cp~C~~ak~lL~~~gV~~~e~DI~~--d-~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e 119 (205)
.||||.++.-+|+.+|++++..-+.. + .....++.++++..++|.+.. +|+.+.....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 49999999999999999998877632 2 222367788888999999998 8899988888777654
No 94
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.18 E-value=0.003 Score=43.78 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=52.4
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
.+|.. +.++.|.+++-+|+..|++|+.+.++.. +...+++.++.....+|.+..+|..+-....+.+.
T Consensus 2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 57887 8999999999999999999998887642 22334677777788999998888776665555544
No 95
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.16 E-value=0.0022 Score=44.57 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=52.2
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH-hHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-SIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l 117 (205)
.+|.. +.|++|.+++-+|+..|++|+.++++... ...+++++++-..++|.+..+ |..+-....+.+.
T Consensus 2 ~Ly~~-----~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 2 TLYTY-----PGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred eEecC-----CCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 46766 88999999999999999999999887642 223567777778899999985 7767655555444
No 96
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.13 E-value=0.0035 Score=43.16 Aligned_cols=56 Identities=29% Similarity=0.442 Sum_probs=41.9
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHh-----CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRM-----HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV 108 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~-----~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I 108 (205)
+++|+. ++|++|..+...|++ .++.+..+|++.++.+.+ ..+-..+|.+++ +|+.+
T Consensus 14 ll~~~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 14 VVDFWA-----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAE----EYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEEC-----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHH----hcCcccccEEEEEECCEEE
Confidence 455656 999999999999987 678888889887665433 345668899877 77643
No 97
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.13 E-value=0.0032 Score=48.48 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=42.0
Q ss_pred cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----C-CCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEee
Q psy221 43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----D-VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVG 109 (205)
Q Consensus 43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IG 109 (205)
.|+| |.. +||+.|+.+..+|+++ + +.|-.+|++++++ +.+..+-..+|.+ |-+|+.++
T Consensus 16 ~vVV~F~A-----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 16 VVVIRFGR-----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEEEC-----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEE
Confidence 3444 777 9999999999888543 2 4677888888774 4555567788987 44887764
No 98
>PTZ00051 thioredoxin; Provisional
Probab=97.01 E-value=0.0066 Score=43.70 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=43.3
Q ss_pred HHHHHhcCC-cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--C
Q psy221 34 SIDEMVKKS-KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--N 104 (205)
Q Consensus 34 ~l~~~~~~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~ 104 (205)
.++++++.+ .++| |.. +||+.|..+...|+.. ++.+-.+|++.... +.+..+-..+|.+.+ +
T Consensus 10 ~~~~~~~~~~~vli~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYA-----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKENITSMPTFKVFKN 80 (98)
T ss_pred HHHHHHhcCCeEEEEEEC-----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCCCceeeEEEEEeC
Confidence 345555544 4444 555 9999999999888663 56777778765543 344446667887644 7
Q ss_pred CeEee
Q psy221 105 GEFVG 109 (205)
Q Consensus 105 G~~IG 109 (205)
|+.++
T Consensus 81 g~~~~ 85 (98)
T PTZ00051 81 GSVVD 85 (98)
T ss_pred CeEEE
Confidence 76553
No 99
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.00 E-value=0.0069 Score=44.80 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=41.5
Q ss_pred CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221 42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV 108 (205)
Q Consensus 42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I 108 (205)
..|+| |.. +||+.|+.....|+++ ++.|-.+|++.++.. .++.+..+-..+|.+++ +|+.+
T Consensus 16 k~vvv~F~a-----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 16 RLVVLEFAL-----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred CEEEEEEEC-----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCCCcCCEEEEEeCCeEE
Confidence 34555 555 9999999998888653 566778887766533 34555557778887644 78654
No 100
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.99 E-value=0.00078 Score=52.75 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh----C-CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM----H-DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~-gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF 102 (205)
+++..+.+..+.+...+++++. +|||+|....-+|.. . ++++..+..+.+++..+.+.. .|.+.+|.++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e-----~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITE-----TWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE-------TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEEC-----CCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEE
Confidence 5667777888878889999999 999999998777743 3 566666665555554444444 5788999996
Q ss_pred e
Q psy221 103 I 103 (205)
Q Consensus 103 I 103 (205)
+
T Consensus 103 ~ 103 (129)
T PF14595_consen 103 F 103 (129)
T ss_dssp E
T ss_pred E
Confidence 6
No 101
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.99 E-value=0.0075 Score=45.70 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=43.9
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeec
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGG 110 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG 110 (205)
+...|+|+... +||+.|+.+...|+++ ++.+-.+|++..++ +.+..+-..+|.+ |-+|+.++-
T Consensus 21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 21 SSERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred CCCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCCccCCEEEEEECCEEEEE
Confidence 44566554443 9999999999888652 57888888887764 4444466678877 448876653
No 102
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.99 E-value=0.0053 Score=46.13 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=45.6
Q ss_pred CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeechhH
Q psy221 42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGCDI 113 (205)
Q Consensus 42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~de 113 (205)
.+|+| |.. +||+.|+.+...|+++ ++.|-.+|++.. ++.+..+-..+|.+ |-+|+.++....
T Consensus 25 ~~vvv~F~a-----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 25 TRVVVHFYE-----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVG 94 (113)
T ss_pred CEEEEEEeC-----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEec
Confidence 45555 656 9999999999888653 466777777543 55666677788977 558988765544
Q ss_pred HHHH
Q psy221 114 LLKL 117 (205)
Q Consensus 114 l~~l 117 (205)
...+
T Consensus 95 ~~~~ 98 (113)
T cd02957 95 FEEL 98 (113)
T ss_pred HHHh
Confidence 4443
No 103
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.96 E-value=0.0045 Score=51.31 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=54.9
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
.+.||+. +.|++|.+++-+|+..|++|+.+.|+... ..+++.++.-..+||.+..||..|--...|.+.
T Consensus 10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~Y 78 (211)
T PRK09481 10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDLIDLNPYQSVPTLVDRELTLYESRIIMEY 78 (211)
T ss_pred eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 4789988 89999999999999999999999987532 234666776678999999888777666555543
No 104
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.93 E-value=0.0059 Score=42.06 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=51.9
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~ 116 (205)
.+|.. +..+.+.+++-+|+..|++|+.++++.. +...+++.+.....++|.+..+|..|.....+.+
T Consensus 2 ~l~~~-----~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGR-----RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEec-----CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence 57777 8899999999999999999998887642 2334567777777899999888877766555544
No 105
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.87 E-value=0.0025 Score=45.73 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=41.1
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG 109 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG 109 (205)
..+++|+..+ +||+.|+..+..|.+ + +|.+-.+|.+.++ .+.+..+-..+|.+++ +|+.+.
T Consensus 17 ~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 17 DKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK----ELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH----HHHHHTTCSSSSEEEEEETTEEEE
T ss_pred CCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhccc----hhhhccCCCCCCEEEEEECCcEEE
Confidence 3555554443 999999999988843 3 4667777777664 4555557778998854 675543
No 106
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.77 E-value=0.0082 Score=41.60 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=49.2
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l 117 (205)
.+|.. +.+ .+.+++-+|...|++|+.++++... ...+++.++.....+|.+..+ |..+-....+.+.
T Consensus 2 ~Ly~~-----~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYS-----PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeC-----CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 46766 555 4789999999999999988776532 234677778888899999887 6666666555554
No 107
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.75 E-value=0.0035 Score=47.23 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
+.|.-|++|+++|+++|++|+++|+..++--+++|.++.
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 899999999999999999999999999876666666553
No 108
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.75 E-value=0.0062 Score=46.21 Aligned_cols=68 Identities=12% Similarity=0.255 Sum_probs=42.1
Q ss_pred HHHHHHHhcCC--cEEE-EEeeCCCCCCChHHHHHHHHHH-------h--CCCCeEEEEccCCHhH---------HHHHH
Q psy221 32 QKSIDEMVKKS--KVVV-FMKGVPEAPRCGFSNAVVQILR-------M--HDVPYDSHDVLKDESI---------RNGIK 90 (205)
Q Consensus 32 ~~~l~~~~~~~--~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~-------~--~gV~~~e~DI~~d~~~---------~~eL~ 90 (205)
-+.++++.+++ +|+| |.. +||++|++....+. . .++.+..+|++.+... ..++.
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~ 77 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQ-----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELA 77 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeC-----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHH
Confidence 34556666655 4544 555 99999999876542 1 2455566776654221 24666
Q ss_pred HHhCCCCccEE-eeC
Q psy221 91 EYTSWPTIPQV-FIN 104 (205)
Q Consensus 91 ~~~g~~tvPqv-FI~ 104 (205)
...+...+|.+ |++
T Consensus 78 ~~~~v~~~Pt~~~~~ 92 (125)
T cd02951 78 RKYRVRFTPTVIFLD 92 (125)
T ss_pred HHcCCccccEEEEEc
Confidence 66677889996 444
No 109
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.68 E-value=0.012 Score=40.43 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=51.2
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
.+|.. +. +.+.+++-+|...|++|+.+.++.. .....++.++.....+|.+..+|..+.....+.+..+
T Consensus 2 ~l~~~-----~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHL-----PR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeC-----CC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 45654 44 5678999999999999998887643 2234566667777899999999988887777666543
No 110
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.67 E-value=0.014 Score=40.49 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCH-hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDE-SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
..++++.+++-+|+..|++|+.+.++... +...++++......+|.+..+|..+.....+.+.
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 67999999999999999999998886532 2345677777788999999998877776665543
No 111
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.65 E-value=0.012 Score=48.13 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=40.7
Q ss_pred cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeec
Q psy221 43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGG 110 (205)
Q Consensus 43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG 110 (205)
.||| |.. +||+.|+.+...|+.+ .+.|-.+|++.. .+....+-..+|.+ |-+|+.++.
T Consensus 85 ~VVV~Fya-----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 85 TVVVHIYE-----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 5665 555 9999999888877543 456777777642 55566677889977 559987753
No 112
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.63 E-value=0.0064 Score=46.89 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----C-CCeEEEEccCCHhHHHHHHHHhCCCCccE--
Q psy221 30 DVQKSIDEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----D-VPYDSHDVLKDESIRNGIKEYTSWPTIPQ-- 100 (205)
Q Consensus 30 ~~~~~l~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPq-- 100 (205)
++.+.+.+. +...||| |+. +||+.|+.+-.+|.++ + +.|-.+|+++.+++-+.+. -...|.
T Consensus 4 ~~d~~i~~~-~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~----I~amPtfv 73 (114)
T cd02986 4 EVDQAIKST-AEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD----ISYIPSTI 73 (114)
T ss_pred HHHHHHHhc-CCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC----ceeCcEEE
Confidence 444444444 3445555 777 9999999999999765 2 5577888888776544433 223444
Q ss_pred EeeCCeEe
Q psy221 101 VFINGEFV 108 (205)
Q Consensus 101 vFI~G~~I 108 (205)
+|-+|+|+
T Consensus 74 ffkngkh~ 81 (114)
T cd02986 74 FFFNGQHM 81 (114)
T ss_pred EEECCcEE
Confidence 56789886
No 113
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.63 E-value=0.017 Score=49.70 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=58.0
Q ss_pred EEEEEeeCCC---CCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 44 VVVFMKGVPE---APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 44 VvlYsk~~~~---~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
|.+|.+.-.+ ...||+|++++.+|...|++|+.++|+.... .+++.++.-..++|.+.-+|..|.....|.+..+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 5666664221 2789999999999999999999988875432 3567777777899999888888888887777654
No 114
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.59 E-value=0.012 Score=42.63 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=43.2
Q ss_pred HHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CC
Q psy221 35 IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NG 105 (205)
Q Consensus 35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G 105 (205)
++++++...++.|.. +||+.|+.....|++. ++.+..+|.+.++. +....+-.++|.+++ +|
T Consensus 11 f~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g 81 (101)
T cd02994 11 WTLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFVTALPTIYHAKDG 81 (101)
T ss_pred HHHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCCcccCEEEEeCCC
Confidence 344556666666777 9999999988887533 45677778776664 334446678888865 55
Q ss_pred e
Q psy221 106 E 106 (205)
Q Consensus 106 ~ 106 (205)
+
T Consensus 82 ~ 82 (101)
T cd02994 82 V 82 (101)
T ss_pred C
Confidence 4
No 115
>KOG0910|consensus
Probab=96.51 E-value=0.006 Score=49.13 Aligned_cols=69 Identities=25% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHHHHhc-CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE-
Q psy221 31 VQKSIDEMVK-KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV- 101 (205)
Q Consensus 31 ~~~~l~~~~~-~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv- 101 (205)
..++-..+++ ..+| |-|.. +||..|+.+.-+|+++ .+.+-.+|++++.+ |...++-..+|.+
T Consensus 50 ~~~~~~~Vi~S~~PVlVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~I~avPtvl 120 (150)
T KOG0910|consen 50 DSEFDDKVINSDVPVLVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYEISAVPTVL 120 (150)
T ss_pred HHHHHHHHHccCCCEEEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcceeeeeEEE
Confidence 3444445554 4555 44888 9999999999999765 34566777777774 4555566789987
Q ss_pred -eeCCeEe
Q psy221 102 -FINGEFV 108 (205)
Q Consensus 102 -FI~G~~I 108 (205)
|-||+-+
T Consensus 121 vfknGe~~ 128 (150)
T KOG0910|consen 121 VFKNGEKV 128 (150)
T ss_pred EEECCEEe
Confidence 5588644
No 116
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0086 Score=53.21 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv 101 (205)
...+++.+.+.....||+|+... |||+.|+....+|+.. ++..-.+|++.++.+ ....|-.++|.|
T Consensus 30 ~anfe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~v----AaqfgiqsIPtV 101 (304)
T COG3118 30 EANFEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMV----AAQFGVQSIPTV 101 (304)
T ss_pred HhHHHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhH----HHHhCcCcCCeE
Confidence 34456666666677677776554 9999999999999754 234567788877755 444577789987
Q ss_pred --eeCCeEeechh
Q psy221 102 --FINGEFVGGCD 112 (205)
Q Consensus 102 --FI~G~~IGG~d 112 (205)
|++|+.|-||.
T Consensus 102 ~af~dGqpVdgF~ 114 (304)
T COG3118 102 YAFKDGQPVDGFQ 114 (304)
T ss_pred EEeeCCcCccccC
Confidence 88999998874
No 117
>PRK15113 glutathione S-transferase; Provisional
Probab=96.47 E-value=0.018 Score=47.75 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=54.4
Q ss_pred CcEEEEEeeCCCCC--CChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 42 SKVVVFMKGVPEAP--RCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 42 ~~VvlYsk~~~~~~--~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
..++||.. + .|++|.+++-+|.+.||+|+.+.++.. +...+++.++.-...||++..||..|--...+.+.
T Consensus 4 ~~~~Ly~~-----~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 4 PAITLYSD-----AHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred CeEEEEeC-----CCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHH
Confidence 45788986 4 699999999999999999998887642 23346777777778999999998777655555443
No 118
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.47 E-value=0.025 Score=47.34 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=43.4
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV 108 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I 108 (205)
+...|++|+. ...+||++|+.+..+|++. ++++..++++.+. ..++.+..+-..+|.+.+ ||+.+
T Consensus 19 ~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred CCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCCCccCEEEEEeCCeee
Confidence 3445667755 3348999999999998655 3455677776443 235666667788999866 65443
No 119
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.46 E-value=0.038 Score=39.19 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=40.2
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV 108 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I 108 (205)
.|+||.-+ +||+.|..+...|++. .+.+-.+|.+.+++ +....+...+|.+++ +|+.+
T Consensus 16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCcCCEEEEEeCCcEe
Confidence 55554443 8999999998877542 36777788776654 344457789999876 77644
No 120
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.21 E-value=0.022 Score=43.49 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCC-cEEE-EEeeCCCCCCChHHHHHHHHHHh------CCCCeEEEEccCCHhHHHHHHHHhCCC--Ccc
Q psy221 30 DVQKSIDEMVKKS-KVVV-FMKGVPEAPRCGFSNAVVQILRM------HDVPYDSHDVLKDESIRNGIKEYTSWP--TIP 99 (205)
Q Consensus 30 ~~~~~l~~~~~~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d~~~~~eL~~~~g~~--tvP 99 (205)
+.++.++++..++ +|+| |.. +||++|+.....+.+ ....|..+|++.+++...+ ..+.. .+|
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a-----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vP 78 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHK-----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIP 78 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeC-----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccc
Confidence 3566667666544 4555 666 999999999888866 3446888888876532211 22222 489
Q ss_pred EEee
Q psy221 100 QVFI 103 (205)
Q Consensus 100 qvFI 103 (205)
.+++
T Consensus 79 t~~f 82 (117)
T cd02959 79 RILF 82 (117)
T ss_pred eEEE
Confidence 8854
No 121
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.14 E-value=0.019 Score=42.20 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh----C---C--CCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM----H---D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQ 100 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~---g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPq 100 (205)
|+++.++++.+...|+|+..+ +||+.|++....|++ + + +.+..+|++..+. +.+..+-.++|.
T Consensus 4 ~~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~I~~~Pt 75 (104)
T cd03000 4 DLDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFGVRGYPT 75 (104)
T ss_pred echhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcCCccccE
Confidence 345566666665666554443 999999988877743 2 3 3445566655543 444456678898
Q ss_pred Eee
Q psy221 101 VFI 103 (205)
Q Consensus 101 vFI 103 (205)
+++
T Consensus 76 ~~l 78 (104)
T cd03000 76 IKL 78 (104)
T ss_pred EEE
Confidence 844
No 122
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.14 E-value=0.044 Score=41.02 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCcEEE-EEeeCCCCCCChHHHHHHHHHH----h---CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeEe
Q psy221 41 KSKVVV-FMKGVPEAPRCGFSNAVVQILR----M---HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEFV 108 (205)
Q Consensus 41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~----~---~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~I 108 (205)
..+|+| |.. +||+.|+.....|+ . .++.+-.+|++.++. +....+-.++|.++ -+|+.+
T Consensus 24 ~~~vlV~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 24 KKPYLIKITS-----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred CCeEEEEEEC-----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCCccCCEEEEEECCEEE
Confidence 345555 555 99999988876653 2 256777888776654 34445677889775 578655
No 123
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.12 E-value=0.048 Score=38.92 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=38.0
Q ss_pred CcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEe
Q psy221 42 SKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFV 108 (205)
Q Consensus 42 ~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~I 108 (205)
..| +.|.. +||+.|.++...|++. .+.+-.+|++..++ +....+-..+|.+ |.+|+.+
T Consensus 15 ~~v~v~f~~-----~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 15 KLLVLHFWA-----PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred CEEEEEEEC-----CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcCCccccEEEEEECCEEE
Confidence 344 44666 9999999999888652 45566666655543 4444566788966 4477644
No 124
>PRK09381 trxA thioredoxin; Provisional
Probab=96.05 E-value=0.022 Score=41.99 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=41.5
Q ss_pred CCcEEE-EEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221 41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG 109 (205)
Q Consensus 41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG 109 (205)
..+++| |.. +|||.|..+...|++ + ++.+-.+|++.++.. ....+-.++|.+++ +|+.++
T Consensus 21 ~~~vvv~f~~-----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 21 DGAILVDFWA-----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred CCeEEEEEEC-----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCCCCcCCEEEEEeCCeEEE
Confidence 344555 555 999999999877753 3 356777888776654 33457788998855 887664
No 125
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.032 Score=51.27 Aligned_cols=117 Identities=16% Similarity=0.265 Sum_probs=75.6
Q ss_pred cCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC---CeEEEEccCCHhHHHHHHHHhCCCC
Q psy221 21 NAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDESIRNGIKEYTSWPT 97 (205)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV---~~~e~DI~~d~~~~~eL~~~~g~~t 97 (205)
+.-++...+++-+.++.+-......-|.. -+|..|-.+.+.|+-+.| .+.-.-| +..-+++|..+. +-..
T Consensus 97 ~G~ppk~~q~vieqik~i~g~~~FETy~S-----ltC~nCPDVVQALN~msvlNp~I~H~~I-dGa~Fq~Evear-~IMa 169 (520)
T COG3634 97 GGHPPKEDQDVIEQIKAIDGDFHFETYFS-----LTCHNCPDVVQALNLMSVLNPRIKHTAI-DGALFQDEVEAR-NIMA 169 (520)
T ss_pred cCCCCchhHHHHHHHHhcCCceeEEEEEE-----eeccCChHHHHHHHHHHhcCCCceeEEe-cchhhHhHHHhc-ccee
Confidence 33345557788888888877778888877 678888888888876654 2222222 245666777654 5568
Q ss_pred ccEEeeCCeEeec----hhHHHHHHhcccH---HHHHhhcCCccccceeecccCCC
Q psy221 98 IPQVFINGEFVGG----CDILLKLHQSGEL---VEQLEKGDQKRKQFILINYISGD 146 (205)
Q Consensus 98 vPqvFI~G~~IGG----~del~~l~e~GeL---~~~L~~~~~~~~~~~~~~~gcGg 146 (205)
+|.||.||+..|. .+++.+-..+|.- .+.+.. ...||..++|+|..|
T Consensus 170 VPtvflnGe~fg~GRmtleeilaki~~gaa~~~ae~~~~--k~~yDVLvVGgGPAg 223 (520)
T COG3634 170 VPTVFLNGEEFGQGRMTLEEILAKIDTGAAKRDAEEFNA--KDAYDVLVVGGGPAG 223 (520)
T ss_pred cceEEEcchhhcccceeHHHHHHHhcCCccccchHHhhc--cCCceEEEEcCCcch
Confidence 9999999998874 3455544444322 222222 136788888888876
No 126
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.05 E-value=0.052 Score=39.90 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=36.3
Q ss_pred CCcEEE-EEeeCCCCCCChHHHHHHHHHHh----CC---CCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeE
Q psy221 41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRM----HD---VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEF 107 (205)
Q Consensus 41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~g---V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~ 107 (205)
..+|+| |.. +||+.|+.....|+. ++ +.+..+|++ ++ ++.+..+-..+|.++ -+|+.
T Consensus 17 ~~~vvv~F~a-----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 17 KGLTVVDVYQ-----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CCeEEEEEEC-----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCCCcCcEEEEEECCEE
Confidence 344545 555 999999999888854 32 345666665 33 344555777888664 47764
No 127
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.98 E-value=0.034 Score=39.81 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=38.5
Q ss_pred cEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221 43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV 108 (205)
Q Consensus 43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I 108 (205)
+|+| |.. +||+.|......|.+. .+.+-.+|++.+++ +.+..+-..+|.+++ +|+.+
T Consensus 14 ~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 14 PVVVDFWA-----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred eEEEEEEC-----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcCCCCCCEEEEEeCCEEe
Confidence 4555 555 9999999998888643 24456777766654 444556778999864 67544
No 128
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=95.96 E-value=0.033 Score=44.83 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=41.0
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHh--CCCCccEE--eeCCeEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYT--SWPTIPQV--FINGEFVG 109 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~--g~~tvPqv--FI~G~~IG 109 (205)
||.|.. +||+.|+.+...|++. ++.+-.+|+++++++.+.+.-.+ +-..+|.+ |.+|+.++
T Consensus 51 vV~Fya-----~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFT-----TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 455666 9999999998877432 36788899988886655543211 12337766 66887764
No 129
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.95 E-value=0.039 Score=40.60 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=37.4
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHh----------------HHHHHHHHhCCC
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDES----------------IRNGIKEYTSWP 96 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~----------------~~~eL~~~~g~~ 96 (205)
..|++|+. ++||+|++..+.+... ++.+..+++..+.. ...++....|-.
T Consensus 7 ~~v~~F~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 7 PIVVVFTD-----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp EEEEEEE------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred EEEEEEEC-----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 34666777 9999999997776531 23445555554331 123566666888
Q ss_pred CccEEee-C--Ce---Eeechh
Q psy221 97 TIPQVFI-N--GE---FVGGCD 112 (205)
Q Consensus 97 tvPqvFI-~--G~---~IGG~d 112 (205)
.+|.+++ | |+ .+-|+-
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS-
T ss_pred ccCEEEEEcCCCCEEEEecCCC
Confidence 8999865 4 66 344553
No 130
>PRK10996 thioredoxin 2; Provisional
Probab=95.84 E-value=0.078 Score=41.49 Aligned_cols=66 Identities=23% Similarity=0.458 Sum_probs=42.2
Q ss_pred HHHHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--
Q psy221 34 SIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-- 103 (205)
Q Consensus 34 ~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-- 103 (205)
.++++++. ..|+| |.. +||+.|+.....|.+. ++.+-.+|++.+++ +.+..+-..+|.+++
T Consensus 44 ~~~~~i~~~k~vvv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWA-----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRIRSIPTIMIFK 114 (139)
T ss_pred HHHHHHhCCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCCCccCEEEEEE
Confidence 34455543 34444 555 9999999987777542 35566777776654 344456677887755
Q ss_pred CCeEe
Q psy221 104 NGEFV 108 (205)
Q Consensus 104 ~G~~I 108 (205)
+|+.+
T Consensus 115 ~G~~v 119 (139)
T PRK10996 115 NGQVV 119 (139)
T ss_pred CCEEE
Confidence 78755
No 131
>KOG4244|consensus
Probab=95.83 E-value=0.025 Score=49.58 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=63.1
Q ss_pred hhhhcCCCCCCChHHHHHHHHHhcCCcEEEEEee-CCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 17 SRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKG-VPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~-~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
..||.....+.+.+ -.++-.+...|.+|.-. ++.. .-.|+|-++..+|+..+|+|+.++= .++.++.
T Consensus 22 ~~f~t~ps~~~~p~---~hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~--------~~~~rSr 90 (281)
T KOG4244|consen 22 KKFFTKPSINPKPK---IHKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC--------SLKRRSR 90 (281)
T ss_pred ceeecCccCCCCcc---chhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc--------cceeecc
Confidence 45666655444444 23455566777777532 2222 4567999999999999999999984 3444566
Q ss_pred CCCccEEeeCCeEeechhHHHH
Q psy221 95 WPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 95 ~~tvPqvFI~G~~IGG~del~~ 116 (205)
..++|-|-.||++|.+.+.+..
T Consensus 91 ~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 91 NGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred CCCcceEEeCCeeccccHHHHH
Confidence 7799999999999999886543
No 132
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.82 E-value=0.073 Score=37.24 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=38.4
Q ss_pred HHHHhcCC-c-EEEEEeeCCCCCCChHHHHHHHHHHh----C----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 35 IDEMVKKS-K-VVVFMKGVPEAPRCGFSNAVVQILRM----H----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 35 l~~~~~~~-~-VvlYsk~~~~~~~Cp~C~~ak~lL~~----~----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
+.+++.+. + +++|.. ++|++|..+...|+. + ++.+..+|.+.++ .+.+..+-..+|.+++
T Consensus 8 ~~~~i~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 8 FDELVKDSKDVLVEFYA-----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHhCCCcEEEEEEC-----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCCCCCEEEE
Confidence 44455443 4 455666 999999999888854 3 3445555655433 4555567788998854
No 133
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=95.77 E-value=0.052 Score=38.97 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=38.5
Q ss_pred HHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--
Q psy221 36 DEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-- 103 (205)
Q Consensus 36 ~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-- 103 (205)
++.+...+++| |.. +||+.|+.....|+.. .+.+-.+|.+.++. +.+..+-..+|.+++
T Consensus 11 ~~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 11 DHHIAEGNHFVKFFA-----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQVRGYPTLLLFK 81 (102)
T ss_pred HHHhhcCCEEEEEEC-----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcCCCcCCEEEEEe
Confidence 34444444544 556 9999999987766432 34566666665553 333456678998754
Q ss_pred CCeE
Q psy221 104 NGEF 107 (205)
Q Consensus 104 ~G~~ 107 (205)
+|+.
T Consensus 82 ~g~~ 85 (102)
T cd03005 82 DGEK 85 (102)
T ss_pred CCCe
Confidence 6643
No 134
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.72 E-value=0.063 Score=38.28 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=34.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
+++|.. +||+.|+.....|+.. ++.+..+|.+.++. +.+..+-..+|.+++
T Consensus 17 ~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 17 LVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhCCCCcCCEEEE
Confidence 566777 9999999877766432 25566667666543 444457788998854
No 135
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.69 E-value=0.063 Score=41.70 Aligned_cols=71 Identities=6% Similarity=-0.005 Sum_probs=43.4
Q ss_pred HHHHhcCC-cEEEEEeeCCCCCCChHHHHHHH-HHHh------C--CCCeEEEEccCCHhHHHHHHH----HhCCCCccE
Q psy221 35 IDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQ-ILRM------H--DVPYDSHDVLKDESIRNGIKE----YTSWPTIPQ 100 (205)
Q Consensus 35 l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~-lL~~------~--gV~~~e~DI~~d~~~~~eL~~----~~g~~tvPq 100 (205)
+.++.+++ +|+|+..+ +||++|+.+.+ .+.. + +.-+..+|+++.+++.+.+.+ ..|...+|.
T Consensus 8 l~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 8 FEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 45555544 57665443 99999999864 3322 2 333456677666665443332 347778888
Q ss_pred Eee---CCeEee
Q psy221 101 VFI---NGEFVG 109 (205)
Q Consensus 101 vFI---~G~~IG 109 (205)
+.+ +|+.+-
T Consensus 84 ~vfl~~~G~~~~ 95 (124)
T cd02955 84 NVFLTPDLKPFF 95 (124)
T ss_pred EEEECCCCCEEe
Confidence 855 577773
No 136
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=95.68 E-value=0.043 Score=47.84 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
-.||+|.+++-+|++.|++|+.+.|+... .-+++.+++-...+|.+..+|..|-....+.+..
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 56999999999999999999988776532 1244566666679999999998787666655543
No 137
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.65 E-value=0.03 Score=45.77 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccC-C--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLK-D--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~-d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
..++++.+++-+|...||+|+.+.++. . ....+++.+++-..++|.+..||..+-....+...
T Consensus 6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~y 71 (210)
T TIGR01262 6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEY 71 (210)
T ss_pred CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHH
Confidence 779999999999999999999988864 1 22235677777778999999999887776666554
No 138
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=95.62 E-value=0.071 Score=39.24 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=40.5
Q ss_pred HHHhcCC-cE-EEEEeeCCCCCCChHHHHHHHHHHhC------------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221 36 DEMVKKS-KV-VVFMKGVPEAPRCGFSNAVVQILRMH------------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101 (205)
Q Consensus 36 ~~~~~~~-~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv 101 (205)
++.++.+ .| |.|.. +||++|+.....|++. .+.+-.+|.+.++ ++.+..+-.++|.+
T Consensus 12 ~~~i~~~~~vlv~F~a-----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~v~~~Ptl 82 (108)
T cd02996 12 DDILQSAELVLVNFYA-----DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYRINKYPTL 82 (108)
T ss_pred HHHHhcCCEEEEEEEC-----CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCCCCcCCEE
Confidence 3444443 33 44656 9999999999888532 2556677776664 45555677899988
Q ss_pred ee--CCe
Q psy221 102 FI--NGE 106 (205)
Q Consensus 102 FI--~G~ 106 (205)
++ +|+
T Consensus 83 ~~~~~g~ 89 (108)
T cd02996 83 KLFRNGM 89 (108)
T ss_pred EEEeCCc
Confidence 54 665
No 139
>KOG0406|consensus
Probab=95.57 E-value=0.073 Score=45.81 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=55.7
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEeeCCeEeechhHHHHHHh
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
..|.||+. -.|||..+++-.|+..||+|+.++++... --+.|.+.. -...+|++.-||+.|.-.-.+.+..+
T Consensus 8 ~~vrL~~~-----w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGM-----WFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEe-----ecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence 67999999 89999999999999999999998887542 113444444 45689999999999876665555433
No 140
>PLN02473 glutathione S-transferase
Probab=95.55 E-value=0.061 Score=44.23 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=52.6
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
+.||.. +.++++.+++-+|..+|++|+.+.++.. +....++.++.-..++|.+..||..|-...-+.+.
T Consensus 3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence 568877 8899999999999999999998866432 22334555566667899999999888777666664
No 141
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.54 E-value=0.066 Score=45.78 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=24.1
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEE
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSH 77 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~ 77 (205)
..|++|+. +.||||++..+.|.++ +|.+..+
T Consensus 109 ~~I~vFtD-----p~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 109 HVITVFTD-----ITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred EEEEEEEC-----CCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 45888998 9999999999988775 4555443
No 142
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=95.50 E-value=0.085 Score=38.27 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=36.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGE 106 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~ 106 (205)
+|.|.. +||++|+.....|++. .+.+-.+|++.++. +.+..+-..+|.+++ +|+
T Consensus 22 ~v~f~a-----~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYS-----PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEC-----CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCCccCEEEEEcCCC
Confidence 344556 9999999998887543 24567788877654 344446678898844 665
No 143
>KOG0907|consensus
Probab=95.42 E-value=0.12 Score=39.15 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=43.3
Q ss_pred HHHHHHHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCCCCccEEe-
Q psy221 31 VQKSIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF- 102 (205)
Q Consensus 31 ~~~~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF- 102 (205)
.......+... ..||| |+. +||+.|+.+.-.+.++- +.|-.+|+++ -.++..-.+-..+|.+.
T Consensus 10 ~~~~~~~~~~~~kliVvdF~a-----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f 80 (106)
T KOG0907|consen 10 LDLVLSAAEAGDKLVVVDFYA-----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVF 80 (106)
T ss_pred HHHHHHHhhCCCCeEEEEEEC-----CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEE
Confidence 33344444443 45566 555 99999999999997663 4566788877 23444444667889873
Q ss_pred -eCCeE
Q psy221 103 -INGEF 107 (205)
Q Consensus 103 -I~G~~ 107 (205)
-+|+-
T Consensus 81 ~k~g~~ 86 (106)
T KOG0907|consen 81 YKGGEE 86 (106)
T ss_pred EECCEE
Confidence 36643
No 144
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.42 E-value=0.097 Score=43.59 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=43.7
Q ss_pred HHHHHHHhcC---CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221 32 QKSIDEMVKK---SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102 (205)
Q Consensus 32 ~~~l~~~~~~---~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF 102 (205)
.++..++.+. ..||| |.. +||+.|+.+...|+.+ .+.|-.+|++.. ....+-..+|.++
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya-----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTll 157 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYK-----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTIL 157 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEEE
Confidence 3444444433 24555 666 9999999999988654 366777776531 2345677899885
Q ss_pred e--CCeEeec
Q psy221 103 I--NGEFVGG 110 (205)
Q Consensus 103 I--~G~~IGG 110 (205)
+ ||+.++-
T Consensus 158 iyk~G~~v~~ 167 (192)
T cd02988 158 VYRNGDIVKQ 167 (192)
T ss_pred EEECCEEEEE
Confidence 4 8876543
No 145
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.41 E-value=0.091 Score=38.72 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=34.0
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
+|.|.. +||++|+.....|+++ ++.+-.+|.+ .++ .+....+-..+|.+++
T Consensus 22 lV~F~a-----~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYA-----SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEC-----CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEEE
Confidence 344666 9999999999888544 4555566655 333 4455567778897753
No 146
>PLN02378 glutathione S-transferase DHAR1
Probab=95.39 E-value=0.063 Score=44.63 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
..||+|.+|.-+|+..|++|+.+.|+.... .+++.++.-..++|.+..||..|--...+.+.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence 779999999999999999999887765322 23566677778999999888777655555554
No 147
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=95.38 E-value=0.066 Score=41.04 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=41.8
Q ss_pred cEEEEEeeCCCCCC--ChHHHHHHHHHHhC----C--CCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeech
Q psy221 43 KVVVFMKGVPEAPR--CGFSNAVVQILRMH----D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGC 111 (205)
Q Consensus 43 ~VvlYsk~~~~~~~--Cp~C~~ak~lL~~~----g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~ 111 (205)
.|+.|.. +| ||.|..+.-+|.+. . +.+-.+|++.++ ++....+-.++|.+ |-||+.++..
T Consensus 30 ~v~~f~~-----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 30 LVLLLAG-----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred EEEEecC-----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 4444555 64 99999999988654 2 345677777765 56666677888987 4489877654
No 148
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.24 E-value=0.09 Score=42.00 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=56.0
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeech---hH
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGC---DI 113 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~---de 113 (205)
...+++|-. |+|..|..=-+.|+.+|.++..++.+.- ..|++..|- .+-=...|||.+|-|. ++
T Consensus 25 ~~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~----~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~a 95 (149)
T COG3019 25 ATEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDF----LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEA 95 (149)
T ss_pred eeeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcH----HHHHHhcCCChhhccccEEEEcCEEEeccCCHHH
Confidence 456888888 9999999999999999988877775433 455555553 4667899999999885 67
Q ss_pred HHHHHhccc
Q psy221 114 LLKLHQSGE 122 (205)
Q Consensus 114 l~~l~e~Ge 122 (205)
+.+|.+++.
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 777766554
No 149
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=95.21 E-value=0.14 Score=36.70 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 55 PRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
+||+.|......|.+. .+.+-.+|.+.++++ .+..+-..+|.+++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~i~~~P~~~~ 78 (103)
T cd03001 28 PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSL----AQQYGVRGFPTIKV 78 (103)
T ss_pred CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHH----HHHCCCCccCEEEE
Confidence 9999999998877542 356677777666543 34446678997744
No 150
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=95.16 E-value=0.12 Score=37.51 Aligned_cols=53 Identities=28% Similarity=0.385 Sum_probs=36.2
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NG 105 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G 105 (205)
+|.|.. +||+.|+.+...+++. .+.+-.+|.+.+++ +.+..+-..+|.+++ +|
T Consensus 23 ~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYA-----PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCCcccEEEEEcCC
Confidence 344666 9999999988777532 35677888776554 444457778898744 55
No 151
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.032 Score=46.45 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=47.3
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ 119 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e 119 (205)
+.||||.+|+.++.-.+|+++.+-+..|.+. -=..+.|+..||.+.- +|++.+-.=|+.....
T Consensus 7 dHCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 7 DHCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ccChHHHHHHHHhhccCCChhhheeccCccc--ChhhhhcccccceEEccccccchhhhHHHHHHH
Confidence 8899999999999999999998877655432 1223458899999876 6788877656555433
No 152
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=94.98 E-value=0.065 Score=38.10 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~ 118 (205)
+..+.|.++.-+|+..|++|+.+++...+. ......+|.|-+||+.|+...-+..+.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 567889999999999999999887532111 112357999999999999888776654
No 153
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=94.96 E-value=0.19 Score=37.24 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=34.4
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF 102 (205)
.-++.|.. +||++|+.....|++. ++.+-.+|++.+. .....+..+...+|.++
T Consensus 23 ~vlv~f~a-----~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYA-----PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEEC-----CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence 33455666 9999999999887543 3556666766521 12223345677899874
No 154
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=94.95 E-value=0.24 Score=34.78 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=46.2
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--HhCCCCccEEeeCCeEeechhHHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--YTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
.++|.. +..+.|.+++-+|+..|++|+.+.++..+++++ +.. ..-...+|.+.+||..+-...-+...
T Consensus 2 ~~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 357766 677788999999999999999888765333211 111 11245899999998777655544443
No 155
>PTZ00062 glutaredoxin; Provisional
Probab=94.81 E-value=0.12 Score=43.68 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=40.8
Q ss_pred HHHHHHhc--CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC---CeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCC
Q psy221 33 KSIDEMVK--KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDESIRNGIKEYTSWPTIPQV--FING 105 (205)
Q Consensus 33 ~~l~~~~~--~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV---~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G 105 (205)
+.+.++++ ...+|+|... +|||.|+.+..+|.++-- .+..+.|+.+ .+-..+|.+ |-||
T Consensus 7 ee~~~~i~~~~g~~vl~f~a----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKS----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeC----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECC
Confidence 34455555 4566666643 999999999999976632 2334444333 466688965 3478
Q ss_pred eEeec
Q psy221 106 EFVGG 110 (205)
Q Consensus 106 ~~IGG 110 (205)
+.|+-
T Consensus 73 ~~i~r 77 (204)
T PTZ00062 73 QLINS 77 (204)
T ss_pred EEEee
Confidence 77764
No 156
>PF13728 TraF: F plasmid transfer operon protein
Probab=94.72 E-value=0.14 Score=43.44 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccCC-------HhHHHHHHHHhCCCCc
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLKD-------ESIRNGIKEYTSWPTI 98 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d-------~~~~~eL~~~~g~~tv 98 (205)
+-.+.++++.+...+++|.. ++|++|.....+| +++|+++..++++.. ...-..+.+..|-..+
T Consensus 110 ~~~~~l~~la~~~gL~~F~~-----~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~ 184 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYR-----SDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT 184 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEc-----CCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC
Confidence 34455667777888999999 8999999888777 467888888888632 1112345555677899
Q ss_pred cEEee
Q psy221 99 PQVFI 103 (205)
Q Consensus 99 PqvFI 103 (205)
|.+|+
T Consensus 185 Pal~L 189 (215)
T PF13728_consen 185 PALFL 189 (215)
T ss_pred CEEEE
Confidence 99987
No 157
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=94.58 E-value=0.073 Score=40.57 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGE 106 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~ 106 (205)
+|.|.. +||++|+.+...|++. .+.+-.+|++.++.. ..+..+-.++|.+ |.+|+
T Consensus 33 lV~FyA-----~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYA-----PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence 344667 9999999998888654 255677787766643 2223344566766 55664
No 158
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=94.57 E-value=0.14 Score=39.54 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=37.5
Q ss_pred CcEEE-EEee-CCC-CCCChHHHHHHHHHH----hC--CCCeEEEEccCCHhH---HHHHHHHhCCC-CccEEee
Q psy221 42 SKVVV-FMKG-VPE-APRCGFSNAVVQILR----MH--DVPYDSHDVLKDESI---RNGIKEYTSWP-TIPQVFI 103 (205)
Q Consensus 42 ~~Vvl-Ysk~-~~~-~~~Cp~C~~ak~lL~----~~--gV~~~e~DI~~d~~~---~~eL~~~~g~~-tvPqvFI 103 (205)
.+|+| |..+ .+. .+||+.|+.+..+|+ ++ ++.+-.+|++..+.. ...++...+-. .+|.+.+
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 45555 4442 232 279999998877664 33 477888888764421 13444444445 8998855
No 159
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=94.47 E-value=0.47 Score=33.17 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=44.2
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
+..|+|-++..+|+-.+++|+.+... ++. .+....+|.|..+|+.|++++.+.+..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence 56799999999999999999766432 221 1234569999999999999998887644
No 160
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=94.45 E-value=0.16 Score=36.97 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=34.8
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
++.|.. +||++|+.....|++. .+.+-.+|++.++ ...+....+-..+|.+++
T Consensus 22 lv~f~a-----~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 22 LVEFYA-----PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEC-----CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEE
Confidence 455666 9999999987777543 2445566766532 234455557788998865
No 161
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.40 E-value=0.46 Score=37.94 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=20.7
Q ss_pred HHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh
Q psy221 37 EMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM 69 (205)
Q Consensus 37 ~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~ 69 (205)
...+...|+||.-. +|||.|++..-.|.+
T Consensus 21 s~~kgk~vlL~FwA----sWCppCr~e~P~L~~ 49 (146)
T cd03008 21 ARLENRVLLLFFGA----VVSPQCQLFAPKLKD 49 (146)
T ss_pred HHhCCCEEEEEEEC----CCChhHHHHHHHHHH
Confidence 33455666665553 899999998888854
No 162
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=94.27 E-value=0.23 Score=38.99 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=38.7
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe-e--CCeEe
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-I--NGEFV 108 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I--~G~~I 108 (205)
..+|+|+..+ +||++|......|.++ .+.|..+|++.+. ...+....+-..+|.++ + +|+.+
T Consensus 20 gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 20 GKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 3445554443 9999999998888643 2456666776432 12344455778899874 4 46544
No 163
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.25 E-value=0.19 Score=35.94 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=33.1
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHh----C----CCCeEEEEccC-CHhHHHHHHHHhCCCCccEEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRM----H----DVPYDSHDVLK-DESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~----gV~~~e~DI~~-d~~~~~eL~~~~g~~tvPqvFI 103 (205)
++.|.. +||+.|+.....+.+ + ++.+-.+|.+. ++. +....+-..+|.+++
T Consensus 22 ~v~f~a-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYA-----PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEC-----CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCCCCCcCEEEE
Confidence 455666 999999988877744 2 24455666665 443 333346678998865
No 164
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.20 E-value=0.24 Score=40.71 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=25.7
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHh--CCCCeEEEEc
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM--HDVPYDSHDV 79 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~--~gV~~~e~DI 79 (205)
...|++|+. +.||+|.++...|.. .+|.+..+.+
T Consensus 78 ~~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 78 KRVVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CEEEEEEEC-----CCCccHHHHHHHHhhccCceEEEEEEc
Confidence 456788888 999999999999973 4555555543
No 165
>KOG1422|consensus
Probab=94.18 E-value=0.19 Score=42.72 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHHhCCCCeEE--EEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 55 PRCGFSNAVVQILRMHDVPYDS--HDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e--~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
-.||+|+++-..|...+++|.. +|+..-+ +.++.++....+|.|-.|++.+-..+.+.+..|
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 6799999999999999998754 5555555 477788888999999999999988887766544
No 166
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.92 E-value=0.18 Score=35.00 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=24.2
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEcc
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVL 80 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~ 80 (205)
|++|.. +.||+|..+...|++. ++.+..+.+.
T Consensus 1 i~~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFD-----PLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEEC-----CCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 467888 9999999999999764 4556666553
No 167
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.23 Score=40.80 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=52.0
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH-hHHHHHHHHhCCCCccEEeeCCe-EeechhHHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-SIRNGIKEYTSWPTIPQVFINGE-FVGGCDILLKL 117 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-~~~~eL~~~~g~~tvPqvFI~G~-~IGG~del~~l 117 (205)
.+|.. +.+|+|.+++-.|.++|++|+.+.|+... ....++.+++-..+||.+..+|- .|-....|.+.
T Consensus 2 ~L~~~-----~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~Y 71 (211)
T COG0625 2 KLYGS-----PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEY 71 (211)
T ss_pred eeecC-----CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHH
Confidence 45666 77799999999999999999999988764 45567878877889999998874 45444444443
No 168
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.84 E-value=0.21 Score=41.43 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=43.1
Q ss_pred cEEEEEeeCCCCCCChHHHHH----HHHHHhCCCCeEEEEccCCH-----hH----HHHHHHHhCC--CCccEEee---C
Q psy221 43 KVVVFMKGVPEAPRCGFSNAV----VQILRMHDVPYDSHDVLKDE-----SI----RNGIKEYTSW--PTIPQVFI---N 104 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~a----k~lL~~~gV~~~e~DI~~d~-----~~----~~eL~~~~g~--~tvPqvFI---~ 104 (205)
++++|.. +|||+|++. +++-+++++++.-++++.+. .+ ...+.+..|. ..+|..|+ +
T Consensus 72 ~lV~Fwa-----swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 72 KVVLFMQ-----GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred eEEEEEC-----CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 4888999 999999998 55556778887777766431 11 2334444553 58999977 5
Q ss_pred Ce-----Eeechh
Q psy221 105 GE-----FVGGCD 112 (205)
Q Consensus 105 G~-----~IGG~d 112 (205)
|+ ++|..+
T Consensus 147 G~i~~~~~~G~~~ 159 (181)
T PRK13728 147 TLEALPLLQGATD 159 (181)
T ss_pred CcEEEEEEECCCC
Confidence 53 346554
No 169
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.80 E-value=0.36 Score=46.55 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHH-------Hh-CCCCeEEEEccCCHhHHHHHHHHhCCCCcc
Q psy221 30 DVQKSIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQIL-------RM-HDVPYDSHDVLKDESIRNGIKEYTSWPTIP 99 (205)
Q Consensus 30 ~~~~~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL-------~~-~gV~~~e~DI~~d~~~~~eL~~~~g~~tvP 99 (205)
++++.+++..++ .+|+| |.. +||+.|+..+... +. .++.+-.+|++.+.+...++.+..+...+|
T Consensus 462 ~l~~~l~~a~~~gK~VlVdF~A-----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 462 ELDQALAEAKGKGKPVMLDLYA-----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred HHHHHHHHHHhcCCcEEEEEEC-----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 445555555443 45655 555 9999999876542 12 246677788887644445566666888899
Q ss_pred EEee
Q psy221 100 QVFI 103 (205)
Q Consensus 100 qvFI 103 (205)
.+++
T Consensus 537 t~~~ 540 (571)
T PRK00293 537 TILF 540 (571)
T ss_pred EEEE
Confidence 8855
No 170
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=93.79 E-value=0.25 Score=43.27 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=41.6
Q ss_pred HHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEccCCHh-------HHHHHHHHhCCCCccEEee
Q psy221 35 IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVLKDES-------IRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~~-------~~~eL~~~~g~~tvPqvFI 103 (205)
+.++.....++.|.. +||++|.....+|+ ++|+.+..++++.+.. .-..+.+..|-..+|.+|+
T Consensus 161 l~~l~~k~~Lv~F~A-----swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 161 MKDLAKKSGLFFFFK-----SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHhcCCeEEEEEEC-----CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 334444445555667 89999998887774 5677777777765321 0123455567889999966
No 171
>PRK10357 putative glutathione S-transferase; Provisional
Probab=93.71 E-value=0.24 Score=40.26 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=47.3
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHH
Q psy221 45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLK 116 (205)
Q Consensus 45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~ 116 (205)
.+|.. ..||++.+++-+|+..||+|+.++++.... ..++.+++...++|.+.. +|..+-....|.+
T Consensus 2 ~Ly~~-----~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~ 68 (202)
T PRK10357 2 KLIGS-----YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPIIAE 68 (202)
T ss_pred eeecC-----CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHHHH
Confidence 46777 889999999999999999999988765321 134445566678999985 5655544444433
No 172
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.59 E-value=1 Score=34.18 Aligned_cols=72 Identities=28% Similarity=0.405 Sum_probs=49.5
Q ss_pred HHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCC-CccEEee--C
Q psy221 34 SIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWP-TIPQVFI--N 104 (205)
Q Consensus 34 ~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~-tvPqvFI--~ 104 (205)
.+.+.....+++||--| .+||=+..|..-|++. .+++-.+||-++..+-.++.+.+|-. .-||+++ |
T Consensus 12 ~i~~~S~~~~~~iFKHS----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~ 87 (105)
T PF11009_consen 12 EILEESKEKPVLIFKHS----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKN 87 (105)
T ss_dssp HHHHH---SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEET
T ss_pred HHHHhcccCcEEEEEeC----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEEC
Confidence 33444557889999886 5699999998888543 38899999999999999999988854 5699866 8
Q ss_pred CeEee
Q psy221 105 GEFVG 109 (205)
Q Consensus 105 G~~IG 109 (205)
|+.+=
T Consensus 88 g~~v~ 92 (105)
T PF11009_consen 88 GKVVW 92 (105)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 87663
No 173
>PTZ00102 disulphide isomerase; Provisional
Probab=93.43 E-value=0.63 Score=42.85 Aligned_cols=64 Identities=16% Similarity=0.359 Sum_probs=39.0
Q ss_pred HHHHHhcCC--cEEEEEeeCCCCCCChHHHHHHHHHH-------hC--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221 34 SIDEMVKKS--KVVVFMKGVPEAPRCGFSNAVVQILR-------MH--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102 (205)
Q Consensus 34 ~l~~~~~~~--~VvlYsk~~~~~~~Cp~C~~ak~lL~-------~~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF 102 (205)
.++++++.+ -+|.|.. +||++|+++...+. .. .+.+-.+|.+.+.+ +.+..+-..+|.++
T Consensus 41 ~f~~~i~~~~~~lv~f~a-----~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 41 TFDKFITENEIVLVKFYA-----PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEFGVRGYPTIK 111 (477)
T ss_pred hHHHHHhcCCcEEEEEEC-----CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhcCCCcccEEE
Confidence 345555443 3455666 99999998875443 22 35667777766553 44445667788774
Q ss_pred e--CCe
Q psy221 103 I--NGE 106 (205)
Q Consensus 103 I--~G~ 106 (205)
+ +|+
T Consensus 112 ~~~~g~ 117 (477)
T PTZ00102 112 FFNKGN 117 (477)
T ss_pred EEECCc
Confidence 4 554
No 174
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=93.43 E-value=0.34 Score=34.05 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=23.8
Q ss_pred HHHHHHHHHhc-CCcEEEEEeeCCCCCCChHHHHHHHHH
Q psy221 30 DVQKSIDEMVK-KSKVVVFMKGVPEAPRCGFSNAVVQIL 67 (205)
Q Consensus 30 ~~~~~l~~~~~-~~~VvlYsk~~~~~~~Cp~C~~ak~lL 67 (205)
++++.+.++.+ ..+|+|+..+ +||++|+...+.+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREV 39 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHH
Confidence 45556666665 4466665544 9999999998877
No 175
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=93.38 E-value=0.32 Score=38.84 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=37.4
Q ss_pred CcEEE-EEeeCCCCCCChHHHHHHHHHHhCC------CCeEEEEccCCHhHHHHHHHHhCCCCccEE-ee-CCe
Q psy221 42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMHD------VPYDSHDVLKDESIRNGIKEYTSWPTIPQV-FI-NGE 106 (205)
Q Consensus 42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~g------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv-FI-~G~ 106 (205)
..||| |.. +||+.|+.+-.+|++.- +.+-.+||++.+++-+++.-. + ..|.+ |. +|+
T Consensus 24 ~lVVvdF~A-----~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~-~--~~t~~~ffk~g~ 89 (142)
T PLN00410 24 RLVVIRFGH-----DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY-D--PCTVMFFFRNKH 89 (142)
T ss_pred CEEEEEEEC-----CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc-C--CCcEEEEEECCe
Confidence 34444 777 99999999999987652 446788998888665444322 1 34555 34 554
No 176
>PLN02395 glutathione S-transferase
Probab=93.37 E-value=0.48 Score=38.82 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=51.2
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ 119 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e 119 (205)
+.||.. ..+ .+.+++-+|...|++|+.+.++.. ....+++.+++-..++|.+..+|..+-....+.+..+
T Consensus 3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 678865 443 369999999999999999887643 2223567777767799999988877777666665433
No 177
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=93.37 E-value=0.7 Score=32.10 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCC-CCccEEeeC-CeEeechhHHHH
Q psy221 59 FSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSW-PTIPQVFIN-GEFVGGCDILLK 116 (205)
Q Consensus 59 ~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~-~tvPqvFI~-G~~IGG~del~~ 116 (205)
.+..++-+|+..|++|+.+.++. .....+++.+..-. ..+|.+..+ |..+-..-.+..
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence 67899999999999999887764 33333677776666 799999999 888766555444
No 178
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.33 E-value=0.57 Score=36.16 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=43.9
Q ss_pred HHHHhcCC--cEEEEEeeCCCCCCCh--HHH----------HHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221 35 IDEMVKKS--KVVVFMKGVPEAPRCG--FSN----------AVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQ 100 (205)
Q Consensus 35 l~~~~~~~--~VvlYsk~~~~~~~Cp--~C~----------~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq 100 (205)
+++.+.++ .||+|... .||+ +|+ .+.++|+..+|.+-.+|++++++ |.+..|-..+|.
T Consensus 19 F~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~~I~~iPT 90 (120)
T cd03065 19 YKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKLGLDEEDS 90 (120)
T ss_pred HHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHcCCccccE
Confidence 44445433 56666652 5664 496 34555667789999999998864 444556677887
Q ss_pred E--eeCCeEee
Q psy221 101 V--FINGEFVG 109 (205)
Q Consensus 101 v--FI~G~~IG 109 (205)
+ |-||+.+.
T Consensus 91 l~lfk~G~~v~ 101 (120)
T cd03065 91 IYVFKDDEVIE 101 (120)
T ss_pred EEEEECCEEEE
Confidence 7 66898653
No 179
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=93.31 E-value=0.35 Score=41.31 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=37.7
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC----C--CCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeEe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH----D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEFV 108 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~I 108 (205)
+|.|.. +||++|+.....+++. + +.+..+|.+.++ .+.+..+-..+|.++ -+|+.+
T Consensus 56 lV~FyA-----pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYA-----PWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEC-----CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCCcCCEEEEEECCEEE
Confidence 455666 9999999998887543 2 455666666554 344555777888774 477654
No 180
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=93.23 E-value=0.29 Score=34.99 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=34.8
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeE
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEF 107 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~ 107 (205)
++.|.. +||++|++....|... .+.+-.+|.+.+. ...+....+-..+|.+++ +|+.
T Consensus 21 ~v~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 21 LVMFYA-----PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEYNVKGFPTFKYFENGKF 87 (104)
T ss_pred EEEEEC-----CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhCCCccccEEEEEeCCCe
Confidence 455666 9999999987655322 2445566766521 124444456678888744 5553
No 181
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.07 E-value=0.4 Score=37.42 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCeEEEEccCCHh-------HHHHHHHHhCCCCccEEeeCCeEe--echhHH
Q psy221 61 NAVVQILRMHDVPYDSHDVLKDES-------IRNGIKEYTSWPTIPQVFINGEFV--GGCDIL 114 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d~~-------~~~eL~~~~g~~tvPqvFI~G~~I--GG~del 114 (205)
..+.+.|++.|++++.+++.++|. +.+.|.. .|...+|.++|||+.+ |.+=..
T Consensus 30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G~e~LPitlVdGeiv~~G~YPt~ 91 (123)
T PF06953_consen 30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EGAEALPITLVDGEIVKTGRYPTN 91 (123)
T ss_dssp HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H-GGG-SEEEETTEEEEESS---H
T ss_pred HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-cCcccCCEEEECCEEEEecCCCCH
Confidence 355667789999999999998753 3333332 4888999999999865 666543
No 182
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=92.99 E-value=0.51 Score=35.52 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=33.6
Q ss_pred cEEE-EEeeCCCCCCChHHHHHHHHHHhCC---------CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 43 KVVV-FMKGVPEAPRCGFSNAVVQILRMHD---------VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~g---------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
.|+| |.. +||+.|......+++.. +.+-.+|.+.+. ..++.+..+...+|++++
T Consensus 21 ~vvV~f~a-----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYA-----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred eEEEEEEC-----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence 4544 556 99999999988875431 334444543322 234555557778998865
No 183
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=1.1 Score=36.73 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCc--EEEEEeeCCCCCCChHHHHHHHHHHh------C---CCCeEEEEccCC------------HhHH
Q psy221 30 DVQKSIDEMVKKSK--VVVFMKGVPEAPRCGFSNAVVQILRM------H---DVPYDSHDVLKD------------ESIR 86 (205)
Q Consensus 30 ~~~~~l~~~~~~~~--VvlYsk~~~~~~~Cp~C~~ak~lL~~------~---gV~~~e~DI~~d------------~~~~ 86 (205)
++.+..+.+...++ +++|.. ++|++|.+.|.-+.. + ...+-+++++.. ..-.
T Consensus 30 ~~~~d~ksi~~~~Kylllmfes-----~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~ 104 (182)
T COG2143 30 DVFDDNKSISPNDKYLLLMFES-----NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMST 104 (182)
T ss_pred hhHHHHHhcCccCcEEEEEEcC-----CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecH
Confidence 34566666665554 566777 999999998876521 1 112233444321 1123
Q ss_pred HHHHHHhCCCCccEEee
Q psy221 87 NGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 87 ~eL~~~~g~~tvPqvFI 103 (205)
++|....+.++.|.++.
T Consensus 105 ~ELa~kf~vrstPtfvF 121 (182)
T COG2143 105 EELAQKFAVRSTPTFVF 121 (182)
T ss_pred HHHHHHhccccCceEEE
Confidence 47777777788887744
No 184
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=92.36 E-value=0.77 Score=37.83 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=41.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI 103 (205)
+.||.. + .+.|.+++-+|+++||+|+.++|+.. +....++.++.-...+|.+..
T Consensus 2 ~~Ly~~-----~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEEC-----C-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence 457765 4 58899999999999999998887643 223356777777779999987
No 185
>PRK11752 putative S-transferase; Provisional
Probab=92.25 E-value=0.65 Score=40.12 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccC--CHhHHHHHHHHhCCCC
Q psy221 26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLK--DESIRNGIKEYTSWPT 97 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~--d~~~~~eL~~~~g~~t 97 (205)
|.+....+.+. ....+++.||+. + +++|.+|+-+|++. |++|+.+.|+. .+....++.++.-..+
T Consensus 28 ~~~~~~~~~~~-~~~~~~~~Ly~~-----~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~Gk 100 (264)
T PRK11752 28 PVAGATHEKTL-PVGKHPLQLYSL-----G-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSK 100 (264)
T ss_pred CCCCcchhccc-CCCCCCeEEecC-----C-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCC
Confidence 44544445443 667789999976 4 89999999999986 88898877653 2223456777766778
Q ss_pred ccEEeeCC----eEeechhHHHHH
Q psy221 98 IPQVFING----EFVGGCDILLKL 117 (205)
Q Consensus 98 vPqvFI~G----~~IGG~del~~l 117 (205)
+|.+..++ ..+-....|.+.
T Consensus 101 VP~Lv~~dg~~~~~L~ES~AIl~Y 124 (264)
T PRK11752 101 IPALLDRSGNPPIRVFESGAILLY 124 (264)
T ss_pred CCEEEeCCCCCCeEEEcHHHHHHH
Confidence 99998753 355555555543
No 186
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=91.98 E-value=0.66 Score=40.52 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccCC--Hh-----HHHHHHHHhCCCCc
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLKD--ES-----IRNGIKEYTSWPTI 98 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d--~~-----~~~eL~~~~g~~tv 98 (205)
+-.+.++++.+...+++|.. +.||+|.+.--+| +.+|+++..++++.. +. .-..+.+..|-..+
T Consensus 140 ~~~~~i~~la~~~gL~fFy~-----~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~ 214 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYR-----GKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF 214 (256)
T ss_pred HHHHHHHHHHhceeEEEEEC-----CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC
Confidence 34556677778889999999 8999999987777 567988888888753 11 11234444577789
Q ss_pred cEEee
Q psy221 99 PQVFI 103 (205)
Q Consensus 99 PqvFI 103 (205)
|.+|+
T Consensus 215 Pal~L 219 (256)
T TIGR02739 215 PALYL 219 (256)
T ss_pred ceEEE
Confidence 99977
No 187
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=91.52 E-value=1 Score=34.02 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=16.6
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHH
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILR 68 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~ 68 (205)
...|+||.-. +||+.|.+....|.
T Consensus 18 gk~vll~Fwa----~wC~~C~~~~p~l~ 41 (131)
T cd03009 18 GKTVGLYFSA----SWCPPCRAFTPKLV 41 (131)
T ss_pred CcEEEEEEEC----CCChHHHHHhHHHH
Confidence 3456555443 89999998777664
No 188
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=91.37 E-value=0.21 Score=42.08 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=35.3
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEcc-----------CCH---hHHHHHHHHhC--CCCccEEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVL-----------KDE---SIRNGIKEYTS--WPTIPQVFI 103 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~-----------~d~---~~~~eL~~~~g--~~tvPqvFI 103 (205)
|.|||. .+|.-|=-|-++|.++ +|=.-...|+ ..+ ..+....+..| ....||++|
T Consensus 2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 689999 9999999999998765 3311222221 122 23444444444 345799999
Q ss_pred CCe-Eeechh
Q psy221 104 NGE-FVGGCD 112 (205)
Q Consensus 104 ~G~-~IGG~d 112 (205)
||+ +..|.+
T Consensus 77 nG~~~~~g~~ 86 (202)
T PF06764_consen 77 NGREHRVGSD 86 (202)
T ss_dssp TTTEEEETT-
T ss_pred CCeeeeeccC
Confidence 995 677776
No 189
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.08 E-value=0.79 Score=34.13 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCC-cEEEEEeeCCCCCCChHHHHHHH-HHHhCCC------CeE--EEEccCCHhHHHHHHHHhCCCCcc
Q psy221 30 DVQKSIDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQ-ILRMHDV------PYD--SHDVLKDESIRNGIKEYTSWPTIP 99 (205)
Q Consensus 30 ~~~~~l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~-lL~~~gV------~~~--e~DI~~d~~~~~eL~~~~g~~tvP 99 (205)
+.++.+++..+++ .++||..+ ++|++|+...+ +|..-.| .|. ..|+.. ++. ..+....+...+|
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~-~~~~~~~~~~~~P 78 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEG-QRFLQSYKVDKYP 78 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccH-HHHHHHhCccCCC
Confidence 4566666666654 57777766 99999998754 5543322 233 335543 333 4566666778899
Q ss_pred EEee
Q psy221 100 QVFI 103 (205)
Q Consensus 100 qvFI 103 (205)
.+.+
T Consensus 79 ~~~~ 82 (114)
T cd02958 79 HIAI 82 (114)
T ss_pred eEEE
Confidence 8843
No 190
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=91.06 E-value=0.98 Score=39.29 Aligned_cols=68 Identities=9% Similarity=0.181 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccC--CHhH-----HHHHHHHhCCCCcc
Q psy221 31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLK--DESI-----RNGIKEYTSWPTIP 99 (205)
Q Consensus 31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~--d~~~-----~~eL~~~~g~~tvP 99 (205)
-.+.++++.+...++.|.. +.||+|.+.--+| +.+|+++..+.++. .+++ -....+..|-..+|
T Consensus 134 ~~~~i~~la~~~GL~fFy~-----s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P 208 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYR-----GQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFP 208 (248)
T ss_pred HHHHHHHHHhcceEEEEEC-----CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccc
Confidence 3445677778899999999 8999999987777 46788888777764 2221 11223445667899
Q ss_pred EEee
Q psy221 100 QVFI 103 (205)
Q Consensus 100 qvFI 103 (205)
.+|+
T Consensus 209 Al~L 212 (248)
T PRK13703 209 ALML 212 (248)
T ss_pred eEEE
Confidence 9987
No 191
>PTZ00057 glutathione s-transferase; Provisional
Probab=90.83 E-value=1.7 Score=35.72 Aligned_cols=69 Identities=10% Similarity=0.244 Sum_probs=48.3
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh-HH--HHHH--HHhCCCCccEEeeCCeEeechhHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES-IR--NGIK--EYTSWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~-~~--~eL~--~~~g~~tvPqvFI~G~~IGG~del~~ 116 (205)
+++||.- +..+.+..++-+|+..||+|+.+.+..+.+ +. +++. ..+-...+|.+.+||..+-...-+..
T Consensus 4 ~~~L~y~-----~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 4 EIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred ceEEEec-----CCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 3778876 556777899999999999999998854322 11 1112 23446689999999987776655554
No 192
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=90.60 E-value=0.7 Score=32.90 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=31.6
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
+|.|.. +||++|+.....|++. .+.+..+|.+.++ +....+-..+|.+++
T Consensus 22 ~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 22 LVEFYA-----PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-----VPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEC-----CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-----hhhhccCCCCCEEEE
Confidence 455666 9999999988877543 2445556665432 222334478898755
No 193
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=90.58 E-value=2 Score=30.29 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHhCCCCeEEEEccCCH-------hHHHHHHHH-hCCCCccEEeeCCeEeechhHHHH
Q psy221 57 CGFSNAVVQILRMHDVPYDSHDVLKDE-------SIRNGIKEY-TSWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 57 Cp~C~~ak~lL~~~gV~~~e~DI~~d~-------~~~~eL~~~-~g~~tvPqvFI~G~~IGG~del~~ 116 (205)
-+.|.+++-+|+..|++|+.+.++..+ ++.....+. .-..++|.+..||..+.-..-+..
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~ 76 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILR 76 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHH
Confidence 456789999999999999988876432 111111111 134589999988876655544444
No 194
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=90.57 E-value=1.3 Score=35.52 Aligned_cols=59 Identities=12% Similarity=0.293 Sum_probs=38.1
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEccCCHh---------HHHHHHHHh---CCCCccEEee
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVLKDES---------IRNGIKEYT---SWPTIPQVFI 103 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~~---------~~~eL~~~~---g~~tvPqvFI 103 (205)
....++.|.. +|||+|++..-.|+ ++++.+.-++++.+.. ..+.+.... +...+|..|+
T Consensus 50 ~~~~lvnFWA-----sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQ-----STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEEC-----CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 4566777888 99999998887774 4577776667654320 012223333 4568899865
No 195
>KOG3425|consensus
Probab=90.53 E-value=0.63 Score=36.37 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHhcCCcEEEEEeeCC----CCCCChHHHHHHHHHHh------CCCCeEEEEccCC
Q psy221 26 PYSTDVQKSIDEMVKKSKVVVFMKGVP----EAPRCGFSNAVVQILRM------HDVPYDSHDVLKD 82 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~----~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d 82 (205)
+.-+++++.+++.-+..+|.+|..+.. +.+|||+|.+|.-++.+ .++.|..++|..-
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 445667777777766666766555432 34999999999877643 2456777777654
No 196
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=90.43 E-value=0.47 Score=36.77 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHHHHhc-CCcEEEEEeeCC---CCCCChHHHHHHHHHH----hC--CCCeEEEEccCCHhHHH---HHHH--HhCC
Q psy221 31 VQKSIDEMVK-KSKVVVFMKGVP---EAPRCGFSNAVVQILR----MH--DVPYDSHDVLKDESIRN---GIKE--YTSW 95 (205)
Q Consensus 31 ~~~~l~~~~~-~~~VvlYsk~~~---~~~~Cp~C~~ak~lL~----~~--gV~~~e~DI~~d~~~~~---eL~~--~~g~ 95 (205)
..+.+++... ..++.||..|.. +.+|||+|.+|.-+++ .. +..+.++.|..-++.++ .++. ...-
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l 87 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL 87 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee
Confidence 4455555443 357777666554 3399999999996664 32 34455666643222221 2222 1233
Q ss_pred CCccEEee
Q psy221 96 PTIPQVFI 103 (205)
Q Consensus 96 ~tvPqvFI 103 (205)
..+|.|+-
T Consensus 88 ~~IPTLi~ 95 (119)
T PF06110_consen 88 KGIPTLIR 95 (119)
T ss_dssp -SSSEEEE
T ss_pred eecceEEE
Confidence 57898864
No 197
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=90.17 E-value=1.6 Score=33.21 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=15.8
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHH
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILR 68 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~ 68 (205)
...|+|+.-+ +||+.|......|+
T Consensus 17 Gk~vll~F~a----twC~~C~~~~p~l~ 40 (132)
T cd02964 17 GKTVGLYFSA----SWCPPCRAFTPKLV 40 (132)
T ss_pred CCEEEEEEEC----CCCchHHHHHHHHH
Confidence 3445554433 89999998766654
No 198
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=1.4 Score=37.85 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=49.4
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC--CeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEee-c---hhHH
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV--PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG-G---CDIL 114 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV--~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IG-G---~del 114 (205)
...|-||+- .+|.-|...-+.|++.|. .++.+|-..-+ ..+++. +--++|-||+||+.+- + .+++
T Consensus 10 ~~~VkI~~H-----ktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~--f~~~~~--~V~SvP~Vf~DGel~~~dpVdp~~i 80 (265)
T COG5494 10 EMEVKIFTH-----KTCVSSYMLFEYLENKGLLGKVKIIDAELPP--FLAFEK--GVISVPSVFIDGELVYADPVDPEEI 80 (265)
T ss_pred heEEEEEEe-----cchHHHHHHHHHHHhcCCCCCceEEEcCCCh--HHHhhc--ceeecceEEEcCeEEEcCCCCHHHH
Confidence 346889988 999999999999999887 35555543332 223332 3457999999999763 3 4666
Q ss_pred HHHHh
Q psy221 115 LKLHQ 119 (205)
Q Consensus 115 ~~l~e 119 (205)
.++.+
T Consensus 81 es~~~ 85 (265)
T COG5494 81 ESILS 85 (265)
T ss_pred HHHHc
Confidence 66655
No 199
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=88.45 E-value=1.3 Score=31.64 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCC--CccEEee
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWP--TIPQVFI 103 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~--tvPqvFI 103 (205)
..-+++|.. ++|+.|+.++..|++. .+.|-.+|+++.+. +.+..|-. .+|.+.+
T Consensus 13 ~~~~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCEEEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEE
Confidence 345566777 8999999999999653 35666777765443 33344544 8999865
No 200
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=88.30 E-value=1.8 Score=40.95 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=36.9
Q ss_pred CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCC
Q psy221 41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--ING 105 (205)
Q Consensus 41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G 105 (205)
...| |.|.. +||++|+.+...|+++ ++.+-.+|++.+.. +......+-..+|.+. -+|
T Consensus 371 ~k~VLV~FyA-----pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 371 KEAWLVVLYA-----PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred CCeEEEEEEC-----CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECC
Confidence 3344 44666 9999999998887543 36677788876632 2222334556788774 455
No 201
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=88.11 E-value=2.3 Score=38.52 Aligned_cols=64 Identities=20% Similarity=0.402 Sum_probs=40.4
Q ss_pred HHHHhcCCc--EEEEEeeCCCCCCChHHHHHHHHHH-------hCC--CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 35 IDEMVKKSK--VVVFMKGVPEAPRCGFSNAVVQILR-------MHD--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 35 l~~~~~~~~--VvlYsk~~~~~~~Cp~C~~ak~lL~-------~~g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
+.++++.++ +|.|.. +||++|+.....+. ..+ |.+-.+|.+.++ ++.+..+-..+|.+++
T Consensus 11 ~~~~i~~~~~~~v~f~a-----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 11 FDDFIKSHEFVLVEFYA-----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGVSGYPTLKI 81 (462)
T ss_pred HHHHHhcCCCEEEEEEC-----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCCccccEEEE
Confidence 444555443 455666 99999998876553 234 667777776664 4444556778898743
Q ss_pred --CCeE
Q psy221 104 --NGEF 107 (205)
Q Consensus 104 --~G~~ 107 (205)
+|+.
T Consensus 82 ~~~g~~ 87 (462)
T TIGR01130 82 FRNGED 87 (462)
T ss_pred EeCCcc
Confidence 5653
No 202
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=88.01 E-value=4.4 Score=31.78 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=21.6
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHh-------CCCCeEEEEccCC
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM-------HDVPYDSHDVLKD 82 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d 82 (205)
...++|+... ++|+.|......|.+ .++.+-.++.+.+
T Consensus 61 ~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~ 105 (173)
T PRK03147 61 GKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET 105 (173)
T ss_pred CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 3445444433 899999986555532 2355555555444
No 203
>PRK10542 glutathionine S-transferase; Provisional
Probab=87.67 E-value=2.1 Score=34.49 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCCeEEEEccCCH---hHHHHHHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221 59 FSNAVVQILRMHDVPYDSHDVLKDE---SIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKL 117 (205)
Q Consensus 59 ~C~~ak~lL~~~gV~~~e~DI~~d~---~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l 117 (205)
.+.+++-+|+..||+|+.+.|+... ...+++.++.-...+|.+.+ ||..|-....|.+.
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHH
Confidence 4678888999999999988776432 12356777777789999987 56677666666554
No 204
>KOG0868|consensus
Probab=86.69 E-value=1.7 Score=36.42 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=47.2
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--C-HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--D-ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d-~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~ 116 (205)
+-++|+-= | +.|. .+||-.|.-.||+|+.+-|+. . ...-.++++..-..+||.+.|||..+-..=.+.+
T Consensus 5 KpiLYSYW-r--SSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~ 76 (217)
T KOG0868|consen 5 KPILYSYW-R--SSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIE 76 (217)
T ss_pred cchhhhhh-c--ccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHH
Confidence 45565530 0 5565 788888888889888776643 3 4445588888777899999999988754433333
No 205
>PLN02309 5'-adenylylsulfate reductase
Probab=86.16 E-value=3.5 Score=38.93 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=33.9
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEee
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
-+|.|.. +||++|+.+...|+++ +|.+-.+|++ .+.++ ..+..+-..+|.|++
T Consensus 368 vlV~FyA-----pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYA-----PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEE
Confidence 3455667 9999999988887543 3556677766 33322 222346667888744
No 206
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=85.17 E-value=7.1 Score=29.05 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=22.2
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEccCC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVLKD 82 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~~d 82 (205)
|+.|.. .|||.|......|+++ ++.+-.++++..
T Consensus 29 vv~F~a-----~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~ 66 (127)
T cd03010 29 LLNVWA-----SWCAPCREEHPVLMALARQGRVPIYGINYKDN 66 (127)
T ss_pred EEEEEc-----CcCHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence 444555 8999999988887554 355555554433
No 207
>KOG1695|consensus
Probab=84.90 E-value=4.8 Score=34.06 Aligned_cols=62 Identities=10% Similarity=0.308 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
+.-..++-+|.+|.-.||+|++..+..... -.+++..+-...+|.+-|||..|.-.-.+.+.
T Consensus 10 ~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 10 NIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred CcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence 456678999999999999999999987764 34555555667899999999988766655554
No 208
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=84.86 E-value=7.3 Score=31.14 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=24.6
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEEEccC
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSHDVLK 81 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~DI~~ 81 (205)
+...|+||..+ +|||.|.+....|+++ ++.+-.++++.
T Consensus 62 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 62 QGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred CCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34455554443 8999999987776544 66666666543
No 209
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=84.13 E-value=1.5 Score=32.40 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=16.5
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhC
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMH 70 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~ 70 (205)
.++.|.. ++|+.|......|..+
T Consensus 23 ~vl~F~~-----~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 23 VLVYFWA-----TWCPVCRFTSPTVNQL 45 (123)
T ss_pred EEEEEEC-----CcChhhhhhChHHHHH
Confidence 3444555 8999999987777644
No 210
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=84.12 E-value=7.3 Score=27.27 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHhCCCC---eEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221 56 RCGFSNAVVQILRMHDVP---YDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH 118 (205)
Q Consensus 56 ~Cp~C~~ak~lL~~~gV~---~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~ 118 (205)
--|.|-++..+|+-.+.+ ++.+.... +. ++-...+|.+.. +++.+.|++++.+..
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW-------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC-------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 478999999999999998 66665432 21 233457999999 999999999988753
No 211
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=84.09 E-value=2.1 Score=33.63 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCC-cEEEEEeeCCCCCCChHHHHHHHHH
Q psy221 30 DVQKSIDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQIL 67 (205)
Q Consensus 30 ~~~~~l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~lL 67 (205)
+.++.+..+.+++ +|+|+..+ +||++|++.++..
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHHh
Confidence 5677777777654 56665544 9999999998864
No 212
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=84.01 E-value=6.6 Score=32.08 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=34.4
Q ss_pred CcEEE-EEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccCCHhHHHHHHH----------------HhCCCCccE
Q psy221 42 SKVVV-FMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLKDESIRNGIKE----------------YTSWPTIPQ 100 (205)
Q Consensus 42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d~~~~~eL~~----------------~~g~~tvPq 100 (205)
++++| |.. +|||.|++....+ ++.++.+.-+..+..++.++.+++ ..+...+|.
T Consensus 75 k~vvl~F~a-----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 75 RPTLLMFTA-----PSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CEEEEEEEC-----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 44555 554 8999999865555 444666555543333333333322 224456898
Q ss_pred Eee---CCeEe
Q psy221 101 VFI---NGEFV 108 (205)
Q Consensus 101 vFI---~G~~I 108 (205)
.|+ +|+.+
T Consensus 150 ~~lID~~G~I~ 160 (189)
T TIGR02661 150 GVLLDQDGKIR 160 (189)
T ss_pred EEEECCCCeEE
Confidence 766 46543
No 213
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=81.30 E-value=1.9 Score=32.69 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCeEEEEcc-CCHhHHHHHHH------HhCCCCccEEeeCCeEeechhHHHHH
Q psy221 61 NAVVQILRMHDVPYDSHDVL-KDESIRNGIKE------YTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~-~d~~~~~eL~~------~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
..+.+++.++|++.+.++-. .++++.+.++. ..|-..+|.++|+|+.+-|+.+...|
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHH
Confidence 35666777777765433211 22333333332 23677899999999999988765544
No 214
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=80.92 E-value=2.6 Score=36.57 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=40.6
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC---------eEEEEcc--CC-------HhHHHHHHHHhCCC--CccEE
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP---------YDSHDVL--KD-------ESIRNGIKEYTSWP--TIPQV 101 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~---------~~e~DI~--~d-------~~~~~eL~~~~g~~--tvPqv 101 (205)
.-|.||+. .+|.-|-.+-+.|.++--+ +++.|-. .| .+.+..+....|.. ..||+
T Consensus 43 ~VVELfTS-----QGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQa 117 (261)
T COG5429 43 GVVELFTS-----QGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQA 117 (261)
T ss_pred eEEEEeec-----CCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchh
Confidence 34678988 8999998999999876432 2233321 12 23333444444543 56999
Q ss_pred eeCCe-Eeechh
Q psy221 102 FINGE-FVGGCD 112 (205)
Q Consensus 102 FI~G~-~IGG~d 112 (205)
+|+|+ +.-|.|
T Consensus 118 vvnGr~~~~Gad 129 (261)
T COG5429 118 VVNGRVHANGAD 129 (261)
T ss_pred eeechhhhcCCC
Confidence 99996 455554
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=80.77 E-value=2 Score=37.10 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=23.5
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHh---C-CCCeEEEEc
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRM---H-DVPYDSHDV 79 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~---~-gV~~~e~DI 79 (205)
+.|++|+- +.||||++..+-+.. . +|.+..+.+
T Consensus 119 ~~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 119 RIVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred eEEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 35788998 999999999777653 2 366555543
No 216
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=80.30 E-value=5.7 Score=27.14 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHhC------CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEe--eCCe
Q psy221 55 PRCGFSNAVVQILRMH------DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVF--INGE 106 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~------gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvF--I~G~ 106 (205)
++|++|......|... .+.+..+|+. .++...+.+.. ....+|.+. .++.
T Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~ 100 (127)
T COG0526 42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK 100 (127)
T ss_pred CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence 8999999998888543 3667788876 55555555542 122346554 4543
No 217
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=79.51 E-value=7.8 Score=28.08 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCcEEE-EEeeCCCCCCChHHHHHHHHHHhCC----CCeEEEEcc-CCHhHHHHHHHHhCCCCccEEe
Q psy221 41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMHD----VPYDSHDVL-KDESIRNGIKEYTSWPTIPQVF 102 (205)
Q Consensus 41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~g----V~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvF 102 (205)
..+++| |.. +||+.|.+....|+++. -.+..+-+. .+.+....+.+..+...+|.++
T Consensus 21 gk~vvl~F~~-----~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLS-----PTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEEC-----CCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 344555 544 89999998877765431 122223232 2333333333333444577664
No 218
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=79.34 E-value=9.1 Score=26.67 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=23.1
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCC
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKD 82 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d 82 (205)
.-++.|.. .+|+.|.+....|.++ ++.+.-++++.+
T Consensus 21 ~~ll~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 21 VVLVNFWA-----SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEEeec-----ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 33455555 8999999776666433 455666677664
No 219
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=78.44 E-value=7 Score=29.81 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=31.4
Q ss_pred cCCcEEE-EEeeCCCCC-CChHHHHHHHHH-------HhCCCCeEEEEccCCHhHHHHHHH
Q psy221 40 KKSKVVV-FMKGVPEAP-RCGFSNAVVQIL-------RMHDVPYDSHDVLKDESIRNGIKE 91 (205)
Q Consensus 40 ~~~~Vvl-Ysk~~~~~~-~Cp~C~~ak~lL-------~~~gV~~~e~DI~~d~~~~~eL~~ 91 (205)
+..+++| |.. . |||.|......| ...++.+..+....++..++.+.+
T Consensus 27 ~gk~~vv~f~~-----~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 27 KGKPVVVNFWA-----SAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp TTSEEEEEEES-----TTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred CCCeEEEEEEc-----cCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 3444444 444 6 999999776444 334677888888888776666665
No 220
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=78.36 E-value=10 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=25.5
Q ss_pred cCCcEEE-EEeeCCCCCCChHHHHHHHHHHh---CCCCeEEEEccCCH
Q psy221 40 KKSKVVV-FMKGVPEAPRCGFSNAVVQILRM---HDVPYDSHDVLKDE 83 (205)
Q Consensus 40 ~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~---~gV~~~e~DI~~d~ 83 (205)
+...|+| |.. .|||.|.+-...|.+ .++.+--++++.++
T Consensus 67 ~gk~vvv~Fwa-----twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~ 109 (185)
T PRK15412 67 QGKPVLLNVWA-----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDR 109 (185)
T ss_pred CCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 3444555 555 899999987766644 46777777665543
No 221
>KOG0867|consensus
Probab=77.91 E-value=11 Score=31.88 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=53.8
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
+..+|+. +.-+.|.++.-.+...|++|+.+.|+. ......++.++.-..++|.+.-+|-.+=....|...
T Consensus 2 ~~~ly~~-----~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Y 73 (226)
T KOG0867|consen 2 KLKLYGH-----LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRY 73 (226)
T ss_pred CceEeec-----CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHH
Confidence 4678888 889999999999999999999886553 334445666776777999999998777666554443
No 222
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=77.38 E-value=29 Score=26.59 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=41.8
Q ss_pred HHHHhcCCcEEE--EEeeCCCCCCCh---HHHHHHHHHHhC--CCCeEEEEccCCHh-HHHHHHHHhCCC--CccEE--e
Q psy221 35 IDEMVKKSKVVV--FMKGVPEAPRCG---FSNAVVQILRMH--DVPYDSHDVLKDES-IRNGIKEYTSWP--TIPQV--F 102 (205)
Q Consensus 35 l~~~~~~~~Vvl--Ysk~~~~~~~Cp---~C~~ak~lL~~~--gV~~~e~DI~~d~~-~~~eL~~~~g~~--tvPqv--F 102 (205)
+++.++.++.+| |.. +- |||. +|++...-+... .|.+-++|++...+ ....|.+..|-. .+|.| |
T Consensus 11 F~~~v~~~~~vlV~F~A--~~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF 87 (116)
T cd03007 11 FYKVIPKFKYSLVKFDT--AY-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLF 87 (116)
T ss_pred HHHHHhcCCcEEEEEeC--CC-CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEE
Confidence 455666665433 433 11 6777 777776555433 37788888854222 225677777776 89977 5
Q ss_pred eCCe
Q psy221 103 INGE 106 (205)
Q Consensus 103 I~G~ 106 (205)
.+|.
T Consensus 88 ~~g~ 91 (116)
T cd03007 88 HGGD 91 (116)
T ss_pred eCCC
Confidence 5673
No 223
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.38 E-value=7.5 Score=37.18 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=36.3
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
.+++|.. +.|++|..++++|++. .|.++++|...+.+. .+.++-..+|.+.|
T Consensus 369 ~l~~~~~-----~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~----~~~~~v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLD-----GSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPES----ETLPKITKLPTVAL 425 (555)
T ss_pred EEEEEEC-----CCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhh----HhhcCCCcCCEEEE
Confidence 3455766 7899999999999874 466778887665443 33344556798876
No 224
>smart00594 UAS UAS domain.
Probab=76.32 E-value=11 Score=28.59 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCC-cEEEEEeeCCCCCCChHHHHHHH-HHHhCCC------CeE--EEEccCCHhHHHHHHHHhCCCCc
Q psy221 29 TDVQKSIDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQ-ILRMHDV------PYD--SHDVLKDESIRNGIKEYTSWPTI 98 (205)
Q Consensus 29 ~~~~~~l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~-lL~~~gV------~~~--e~DI~~d~~~~~eL~~~~g~~tv 98 (205)
...++.++++.++. .++||.-+ ++|++|....+ +|..-.| .|. ..|+...+. ..+....+..++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~~~~ 87 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHS----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKLDSF 87 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeC----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCcCCC
Confidence 35667777777654 56666654 89999998544 3433222 233 356554443 356666778889
Q ss_pred cEEee
Q psy221 99 PQVFI 103 (205)
Q Consensus 99 PqvFI 103 (205)
|.+.+
T Consensus 88 P~~~~ 92 (122)
T smart00594 88 PYVAI 92 (122)
T ss_pred CEEEE
Confidence 98855
No 225
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=75.47 E-value=4.7 Score=32.07 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCeEEEE-ccCCHhHHHHHHHH------hCCCCccEEeeCCeEeechhHHHHH
Q psy221 61 NAVVQILRMHDVPYDSHD-VLKDESIRNGIKEY------TSWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~D-I~~d~~~~~eL~~~------~g~~tvPqvFI~G~~IGG~del~~l 117 (205)
..+.+++.+.|++.++.. ...++++++.+.+- .|-..+|.++|||+.+=|.+.+..+
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHH
Confidence 346777788887654322 22344455544432 3778999999999999888876654
No 226
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=75.05 E-value=2.7 Score=33.52 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCCeEEEEc-cCCHhHHHHHHHH------hCCCCccEEeeCCe-EeechhHHHHH
Q psy221 61 NAVVQILRMHDVPYDSHDV-LKDESIRNGIKEY------TSWPTIPQVFINGE-FVGGCDILLKL 117 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI-~~d~~~~~eL~~~------~g~~tvPqvFI~G~-~IGG~del~~l 117 (205)
..+.+++.+.|++.++.+- ..+++.++.+.+- .|-..+|.++|||+ .+-|.+.+-.|
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 4577888888886655442 2445555555543 47889999999999 78888765554
No 227
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=75.01 E-value=38 Score=28.17 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE 106 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~ 106 (205)
.+.+.+.+.++.+..+-++|..+-.. ..=.+-..+++.|+.+ |+++...++..+++..+.|.+ .=.||+.|
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~------ad~I~l~G- 88 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLE------ADVIYVGG- 88 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhc------CCEEEECC-
Confidence 44566777777655555666554333 2235778899999999 999888887655555555553 45678877
Q ss_pred EeechhHHHHHHhcccHHHHHhhcCCccccceeecccCCCC
Q psy221 107 FVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDA 147 (205)
Q Consensus 107 ~IGG~del~~l~e~GeL~~~L~~~~~~~~~~~~~~~gcGgf 147 (205)
|....+.+..+.-.|.++|+..- ... .++.+.|.|+
T Consensus 89 --G~~~~~~~~l~~~~l~~~l~~~~--~~g-~~i~G~SAGa 124 (212)
T cd03146 89 --GNTFNLLAQWREHGLDAILKAAL--ERG-VVYIGWSAGS 124 (212)
T ss_pred --chHHHHHHHHHHcCHHHHHHHHH--HCC-CEEEEECHhH
Confidence 55555444444446788887541 222 3344577774
No 228
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=74.89 E-value=21 Score=30.70 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221 29 TDVQKSIDEMVKKSKVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF 107 (205)
Q Consensus 29 ~~~~~~l~~~~~~~~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~ 107 (205)
.-..+.+.+.+..++-|+|--+.... +.=.|-.+.++.|+++|+++..+++..+. .+.|.+ .=.|||.|
T Consensus 18 ~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~--~~~l~~------ad~I~v~G-- 87 (233)
T PRK05282 18 EHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADP--VAAIEN------AEAIFVGG-- 87 (233)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhh--HHHHhc------CCEEEECC--
Confidence 34455566666555656665533322 34456789999999999998888776432 233332 22555554
Q ss_pred eechhHHHHHHhcccHHHHHhhcCCccccceeecccCCCC
Q psy221 108 VGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDA 147 (205)
Q Consensus 108 IGG~del~~l~e~GeL~~~L~~~~~~~~~~~~~~~gcGgf 147 (205)
|..-.+.+....-.|.+.|++. .+.+ .++.+-|.|+
T Consensus 88 -Gnt~~l~~~l~~~gl~~~l~~~--~~~G-~~~~G~SAGA 123 (233)
T PRK05282 88 -GNTFQLLKQLYERGLLAPIREA--VKNG-TPYIGWSAGA 123 (233)
T ss_pred -ccHHHHHHHHHHCCcHHHHHHH--HHCC-CEEEEECHHH
Confidence 2333455444445577777654 1223 3344567675
No 229
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=73.31 E-value=57 Score=28.07 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcC-CcEEEEEeeCC-CCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221 29 TDVQKSIDEMVKK-SKVVVFMKGVP-EAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE 106 (205)
Q Consensus 29 ~~~~~~l~~~~~~-~~VvlYsk~~~-~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~ 106 (205)
+-..+++.+.+.. .+=+.|--.-. +..+=+|=.++++.|+++|+.+.++++...+. +++...... .|.-
T Consensus 18 ~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l~~-------~d~I 88 (224)
T COG3340 18 EHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKLMK-------ADII 88 (224)
T ss_pred hhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhhhh-------ccEE
Confidence 3344555554444 33444443222 22667889999999999999999999987652 333332211 2344
Q ss_pred Eeech---hHHHHHHhcccHHHHHhhc
Q psy221 107 FVGGC---DILLKLHQSGELVEQLEKG 130 (205)
Q Consensus 107 ~IGG~---del~~l~e~GeL~~~L~~~ 130 (205)
+|||- .-++.|.+.|-+.-+.+..
T Consensus 89 yVgGGNTF~LL~~lke~gld~iIr~~v 115 (224)
T COG3340 89 YVGGGNTFNLLQELKETGLDDIIRERV 115 (224)
T ss_pred EECCchHHHHHHHHHHhCcHHHHHHHH
Confidence 56553 4477777777665555443
No 230
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=72.85 E-value=6.3 Score=30.32 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=17.7
Q ss_pred CCCCccEEeeCCeEeechhHHHHH
Q psy221 94 SWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 94 g~~tvPqvFI~G~~IGG~del~~l 117 (205)
|-..+|.++|||+++.|..++.+|
T Consensus 133 ~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 133 GITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp T-SSSSEEEETTCEEETTTSHHHH
T ss_pred CCccccEEEECCEEeCCCCCHHHH
Confidence 567899999999999865544443
No 231
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=72.74 E-value=25 Score=26.41 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHHh-------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221 55 PRCGFSNAVVQILRM-------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv 101 (205)
.+||.|..-...|.+ .++.+--+..+...... .+.+.. ..++|.+
T Consensus 34 ~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~-~~~~p~~ 85 (149)
T cd02970 34 FGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK-FLPFPVY 85 (149)
T ss_pred CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc-CCCCeEE
Confidence 799999986555543 45555555544333332 233222 2356643
No 232
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=72.73 E-value=13 Score=28.88 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=28.5
Q ss_pred CCChHHHH-----------HHHHHHhCCCCe--EEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221 55 PRCGFSNA-----------VVQILRMHDVPY--DSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF 107 (205)
Q Consensus 55 ~~Cp~C~~-----------ak~lL~~~gV~~--~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~ 107 (205)
.+|+.|.. ++..|..+||++ +++.++.....++. -..|.|.|||+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~-------~~S~~I~inG~p 71 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP-------LESPTIRINGRP 71 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc-------cCCCeeeECCEe
Confidence 47887754 455577788864 55555443222111 467999999974
No 233
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=72.21 E-value=11 Score=27.59 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=30.4
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHH-------hCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILR-------MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~-------~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF 102 (205)
+..+++|+.-.. .+||.|......|+ ..++.+-.+..+...+.++.+.+. + ..+|.+.
T Consensus 24 ~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~-~-~~~~~~~ 88 (124)
T PF00578_consen 24 KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY-G-LPFPVLS 88 (124)
T ss_dssp TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH-T-CSSEEEE
T ss_pred CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh-c-ccccccc
Confidence 345555554421 38999976655443 335556566654444444444443 2 3445443
No 234
>PTZ00102 disulphide isomerase; Provisional
Probab=71.70 E-value=7.8 Score=35.62 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=33.0
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCC--------CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHD--------VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g--------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
..|+|+..+ +||++|+.....|++.. +.+-.+|.+.++.. ....+.+.+|.+++
T Consensus 376 k~vlv~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 376 KDVLLEIYA----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFSWSAFPTILF 437 (477)
T ss_pred CCEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCCCcccCeEEE
Confidence 345554433 99999999988886531 34556666655432 22335567888744
No 235
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=70.51 E-value=14 Score=27.19 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCChHHHHHHHHHHhCCC--CeEEEEccCCHhHHHHHHH--HhC--CCCccEEeeCCe-EeechhHHHHHHhc
Q psy221 55 PRCGFSNAVVQILRMHDV--PYDSHDVLKDESIRNGIKE--YTS--WPTIPQVFINGE-FVGGCDILLKLHQS 120 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV--~~~e~DI~~d~~~~~eL~~--~~g--~~tvPqvFI~G~-~IGG~del~~l~e~ 120 (205)
..||.|....+.+..+.. .++.+|+..++.. +.+.. ++. ..+.-.+.-+|+ ...|.+-+.++...
T Consensus 5 g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 5 GDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ-ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCCHhHHHHHHHHHhcCCCCCEEEEECCChhhh-hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 479999999999998864 6888888433321 11211 111 123334433776 88999988877555
No 236
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=70.06 E-value=16 Score=35.14 Aligned_cols=25 Identities=4% Similarity=0.025 Sum_probs=17.3
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhC
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH 70 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~ 70 (205)
.+|+|+.-+ +||+.|.+....|+++
T Consensus 57 KpVvV~FWA----TWCppCk~emP~L~eL 81 (521)
T PRK14018 57 KPTLIKFWA----SWCPLCLSELGETEKW 81 (521)
T ss_pred CEEEEEEEc----CCCHHHHHHHHHHHHH
Confidence 445554433 9999999988777543
No 237
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=67.39 E-value=11 Score=34.23 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=33.2
Q ss_pred CcEEE-EEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
..|+| |.. +||+.|+.....+++. ++.+-.+|++.++.. . .+-..+|.+++
T Consensus 365 ~~vlv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-----~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 365 KDVLVEFYA-----PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-----P-FEVEGFPTIKF 425 (462)
T ss_pred CeEEEEEEC-----CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-----C-CCccccCEEEE
Confidence 34444 666 9999999988877542 355667777654321 1 34567898865
No 238
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=66.97 E-value=17 Score=26.72 Aligned_cols=44 Identities=7% Similarity=0.202 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEc
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDV 79 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI 79 (205)
.+.+.+.++-+.-.+++|+. +. ++|..++++|++. .|.+++++.
T Consensus 9 qL~~~f~~l~~pV~l~~f~~-----~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~ 57 (94)
T cd02974 9 QLKAYLERLENPVELVASLD-----DS-EKSAELLELLEEIASLSDKITLEEDND 57 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeC-----CC-cchHHHHHHHHHHHHhCCceEEEEecC
Confidence 34444443322223344655 45 8999999999765 445555553
No 239
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=66.22 E-value=6.2 Score=29.78 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=25.2
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEcc
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVL 80 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~ 80 (205)
...|++|+. +.||+|.+....|... .+.+..+++.
T Consensus 6 ~~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 6 DVTIVEFFD-----YNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CEEEEEEEC-----CCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 346778888 9999999998777653 2556666653
No 240
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=64.12 E-value=25 Score=26.09 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=23.3
Q ss_pred CCeEEEEccCCHh--HHHHHH-HHhC-CCCccEEeeCCeEeec
Q psy221 72 VPYDSHDVLKDES--IRNGIK-EYTS-WPTIPQVFINGEFVGG 110 (205)
Q Consensus 72 V~~~e~DI~~d~~--~~~eL~-~~~g-~~tvPqvFI~G~~IGG 110 (205)
..|+.+||...++ ..+++. ++.. .--+|.|.|+|+.||-
T Consensus 38 f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 38 FEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred eEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 4578888876433 223333 3333 3457999999999974
No 241
>PHA03075 glutaredoxin-like protein; Provisional
Probab=63.64 E-value=10 Score=29.50 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=25.8
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEE
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH 77 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~ 77 (205)
..+++|.| |.|+-|+.+.++|..+.-+|+..
T Consensus 3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~il 33 (123)
T PHA03075 3 KTLILFGK-----PLCSVCESISEALKELEDEYDIL 33 (123)
T ss_pred ceEEEeCC-----cccHHHHHHHHHHHHhhccccEE
Confidence 46789999 99999999999998876666543
No 242
>KOG2501|consensus
Probab=63.39 E-value=41 Score=27.36 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=28.7
Q ss_pred HHHHhcCCcEEEEEeeCCCCCCChHHHH----HHHHHH---hCCCCeEEEEccCC
Q psy221 35 IDEMVKKSKVVVFMKGVPEAPRCGFSNA----VVQILR---MHDVPYDSHDVLKD 82 (205)
Q Consensus 35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~----ak~lL~---~~gV~~~e~DI~~d 82 (205)
+.+.+...-|.+|... .|||.|+. .+++++ +.+-+++.+-|+.|
T Consensus 27 ~~~~l~gKvV~lyFsA----~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 27 ASEALQGKVVGLYFSA----HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred HhHhhCCcEEEEEEEE----EECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 3445555566666553 89999985 344443 44556988888776
No 243
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=63.29 E-value=46 Score=27.17 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=30.3
Q ss_pred HHHHhcCC-cEEEEEeeCCCCCCChHHHHHHH----------HHHhCCCCeEEEEccCCHhHHHHHH----HHhCCCCcc
Q psy221 35 IDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQ----------ILRMHDVPYDSHDVLKDESIRNGIK----EYTSWPTIP 99 (205)
Q Consensus 35 l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~----------lL~~~gV~~~e~DI~~d~~~~~eL~----~~~g~~tvP 99 (205)
+++.-+++ +|.|..-. ++|.+|..+.+ +|+++=|++ .+|.++.|++...+. ..+|....|
T Consensus 30 ~~~Ak~e~KpIfl~ig~----~~C~wChvM~~esf~d~eVa~~lN~~FI~V-kvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGY----SWCHWCHVMERESFSDPEVAEYLNRNFIPV-KVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHT--EEEEEE-----TT-HHHHHHHHHTTT-HHHHHHHHHH-EEE-EEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHhcCCcEEEEEEe----cCCcchhhhcccCcCCHHHHHHHhCCEEEE-EeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 44444444 45443322 89999997664 333332222 355566666544443 334555555
Q ss_pred EEee---CCeEe
Q psy221 100 QVFI---NGEFV 108 (205)
Q Consensus 100 qvFI---~G~~I 108 (205)
...+ +|+.+
T Consensus 105 l~vfltPdg~p~ 116 (163)
T PF03190_consen 105 LTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TTS-EE
T ss_pred ceEEECCCCCee
Confidence 4422 55544
No 244
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=63.02 E-value=17 Score=35.30 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=46.2
Q ss_pred HHHHHhcCC---cEEE-EEeeCCCCCCChHHHHHHHHH--------HhCCCCeEEEEccC-CHhHHHHHHHHhCCCCccE
Q psy221 34 SIDEMVKKS---KVVV-FMKGVPEAPRCGFSNAVVQIL--------RMHDVPYDSHDVLK-DESIRNGIKEYTSWPTIPQ 100 (205)
Q Consensus 34 ~l~~~~~~~---~Vvl-Ysk~~~~~~~Cp~C~~ak~lL--------~~~gV~~~e~DI~~-d~~~~~eL~~~~g~~tvPq 100 (205)
+++++..++ +|++ |+. +||--|+..++.. +-.++-.-+.|++. |++.++.|+++ |...+|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyA-----dWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYA-----DWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeeh-----hHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCCE
Confidence 666666654 4655 777 9999999887765 33466677889876 57777777765 7788888
Q ss_pred Eee
Q psy221 101 VFI 103 (205)
Q Consensus 101 vFI 103 (205)
+++
T Consensus 538 ~~f 540 (569)
T COG4232 538 YLF 540 (569)
T ss_pred EEE
Confidence 754
No 245
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=62.47 E-value=11 Score=29.59 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCeEEEEcc-CCHhHHHHHH------HHhCCCCccEEeeCCeEeechh
Q psy221 61 NAVVQILRMHDVPYDSHDVL-KDESIRNGIK------EYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~-~d~~~~~eL~------~~~g~~tvPqvFI~G~~IGG~d 112 (205)
..+.+++.+.|++.+..+-. .+.++++.+. ...|-..+|.++|||+++-+..
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChh
Confidence 56778888888865443321 2333333333 2247789999999999864444
No 246
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=61.71 E-value=9 Score=29.97 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.6
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEcc
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVL 80 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~ 80 (205)
...|+.|.. ..||+|......+..+ +|.++.+.+.
T Consensus 16 ~~~i~~f~D-----~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 16 KPEVIEFFS-----YGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CcEEEEEEC-----CCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 456888988 9999999988877533 4556655554
No 247
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=61.67 E-value=33 Score=29.40 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHhcCCcEEEEEee-CCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCC
Q psy221 26 PYSTDVQKSIDEMVKKSKVVVFMKG-VPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSW 95 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~VvlYsk~-~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~ 95 (205)
..|+..++.++.+-+.-.|.+|... ++. ..-+.=..++++|+++ +|.++.+|.+.+++..++.....|-
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~-~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPP-ELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcch-hhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 3477777888887666666677662 111 1456668999999887 7889999987777766665555553
No 248
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=61.47 E-value=29 Score=25.88 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=15.9
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHH
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILR 68 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~ 68 (205)
+...|+||.-+ .+||.|.+....|+
T Consensus 22 ~gk~vvl~F~a----~~C~~C~~~~p~l~ 46 (126)
T cd03012 22 RGKVVLLDFWT----YCCINCLHTLPYLT 46 (126)
T ss_pred CCCEEEEEEEC----CCCccHHHHHHHHH
Confidence 33445554433 89999998765554
No 249
>KOG0908|consensus
Probab=61.42 E-value=21 Score=31.55 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCCCCccEE--e
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--F 102 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--F 102 (205)
+...++...-...-||=|+. +||..|+++--++..+- --|-.+||++-... ..-.|-...|.. |
T Consensus 11 df~~~ls~ag~k~v~Vdfta-----~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t----aa~~gV~amPTFiff 81 (288)
T KOG0908|consen 11 DFQRELSAAGGKLVVVDFTA-----SWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGT----AATNGVNAMPTFIFF 81 (288)
T ss_pred HHHHhhhccCceEEEEEEEe-----cccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhch----hhhcCcccCceEEEE
Confidence 34444333333344555888 99999999999997663 33678888643321 222355667765 7
Q ss_pred eCCeEe---echh
Q psy221 103 INGEFV---GGCD 112 (205)
Q Consensus 103 I~G~~I---GG~d 112 (205)
.||+.| -|+|
T Consensus 82 ~ng~kid~~qGAd 94 (288)
T KOG0908|consen 82 RNGVKIDQIQGAD 94 (288)
T ss_pred ecCeEeeeecCCC
Confidence 799765 4665
No 250
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=61.30 E-value=28 Score=24.26 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=20.3
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHh----CC--CCeEEEEccCC
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRM----HD--VPYDSHDVLKD 82 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g--V~~~e~DI~~d 82 (205)
++.|.. ++|+.|.+....|.+ ++ -.++.+-|+.|
T Consensus 5 ll~fwa-----~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 5 LLYFWA-----SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp EEEEE------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 344555 899999998887743 23 44555544444
No 251
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=60.78 E-value=80 Score=24.80 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=41.0
Q ss_pred CcEEEEEeeCCCC-CCChHHHHHHHHH-HhCC---CCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeechh
Q psy221 42 SKVVVFMKGVPEA-PRCGFSNAVVQIL-RMHD---VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGCD 112 (205)
Q Consensus 42 ~~VvlYsk~~~~~-~~Cp~C~~ak~lL-~~~g---V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~d 112 (205)
...|||..|-|.. +...+=.-+-.-| ++++ +.+-.+|++.++ +|....|-..+|.+ |-||+.+|-..
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~----~LA~~fgV~siPTLl~FkdGk~v~~i~ 108 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE----AIGDRFGVFRFPATLVFTGGNYRGVLN 108 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH----HHHHHcCCccCCEEEEEECCEEEEEEe
Confidence 3467777776654 3333333333323 3433 567788887765 55666677889988 44998886543
No 252
>KOG0190|consensus
Probab=60.19 E-value=26 Score=33.54 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCcEEE--EEeeCCCCCCChHHHH-------HHHHHHhC--CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221 32 QKSIDEMVKKSKVVV--FMKGVPEAPRCGFSNA-------VVQILRMH--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ 100 (205)
Q Consensus 32 ~~~l~~~~~~~~Vvl--Ysk~~~~~~~Cp~C~~-------ak~lL~~~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq 100 (205)
.+-+++.+..+..++ |-. |||.+|++ |-+.|.+. .|..-.+|-... ..+....+-+.+|.
T Consensus 32 ~dnf~~~i~~~~~vlVeFYA-----PWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYA-----PWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPT 102 (493)
T ss_pred cccHHHHhccCceEEEEEEc-----hhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCe
Confidence 344678888877653 667 99999975 45666666 455666765544 45555566777887
Q ss_pred E--eeCCe
Q psy221 101 V--FINGE 106 (205)
Q Consensus 101 v--FI~G~ 106 (205)
+ |.||+
T Consensus 103 lkiFrnG~ 110 (493)
T KOG0190|consen 103 LKIFRNGR 110 (493)
T ss_pred EEEEecCC
Confidence 7 55776
No 253
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=59.83 E-value=27 Score=27.83 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=41.1
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC--CeEEEEccCCHhHHHHHHHHhCCC-C--ccEEee-CCeEeechhH
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV--PYDSHDVLKDESIRNGIKEYTSWP-T--IPQVFI-NGEFVGGCDI 113 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV--~~~e~DI~~d~~~~~eL~~~~g~~-t--vPqvFI-~G~~IGG~de 113 (205)
+...||+|-. .|+.|...+.+|.++.- .+...++-. +.-.++.+..|.. . --.+++ +|+..-|.|-
T Consensus 7 ~p~~vvlyDG------~C~lC~~~vrfLi~~D~~~~i~f~~~q~--e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA 78 (137)
T COG3011 7 KPDLVVLYDG------VCPLCDGWVRFLIRRDQGGRIRFAALQS--EPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDA 78 (137)
T ss_pred CCCEEEEECC------cchhHHHHHHHHHHhccCCcEEEEeccC--chhhhHHhhcCCChhhhheeeEecCCceEeccHH
Confidence 3456777755 79999999999988744 455555533 3334555555432 2 233455 4555666665
Q ss_pred HHH
Q psy221 114 LLK 116 (205)
Q Consensus 114 l~~ 116 (205)
+.+
T Consensus 79 ~~~ 81 (137)
T COG3011 79 AIR 81 (137)
T ss_pred HHH
Confidence 443
No 254
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=58.96 E-value=12 Score=25.16 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=28.2
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE 106 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~ 106 (205)
+.||+. ..=-....++.+|++.||++...|-..... .-. .|....+.|+|...
T Consensus 1 ~~l~~~-----~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTA-----GDPIEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE-------HHHHHHHHHHHHHTT--EE--S----SS--------S--SSSEEEEEEGG
T ss_pred CEEEEc-----CCHHHHHHHHHHHHhCCCcEEEECCccchh----hcc-cCccCceEEEECHH
Confidence 356666 555677899999999999998887543332 111 34444588988764
No 255
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=58.70 E-value=36 Score=26.41 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHhcC-CcEEEEEeeCCCCCCChHHH------------HHHHHHHhCCCCeEEEEccC
Q psy221 27 YSTDVQKSIDEMVKK-SKVVVFMKGVPEAPRCGFSN------------AVVQILRMHDVPYDSHDVLK 81 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~-~~VvlYsk~~~~~~~Cp~C~------------~ak~lL~~~gV~~~e~DI~~ 81 (205)
...++.+.++++.+. +.|++.|. ....... ...++|++++++|+++.+-.
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTG-----R~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSS-----RNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECC-----CCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 356677777777554 44555543 3333333 78899999999999888743
No 256
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=58.19 E-value=63 Score=30.52 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=18.5
Q ss_pred CCChHHHHHHHHHHhC-----CCCeEEEEc
Q psy221 55 PRCGFSNAVVQILRMH-----DVPYDSHDV 79 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~-----gV~~~e~DI 79 (205)
+.|++|..++++|++. +|.+++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~ 57 (515)
T TIGR03140 28 GSHEKSKELLELLDEIASLSDKISLTQNTA 57 (515)
T ss_pred CCCchhHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4589999999999765 455666554
No 257
>KOG4420|consensus
Probab=57.83 E-value=7.4 Score=34.51 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=54.1
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhc
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQS 120 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~ 120 (205)
.|+|-- +..-..++|+-.+.+.||.++++||+.- +.....+..+.-...||++.=+..-|-.+.++....|.
T Consensus 27 ~vLyhh-----pysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHH-----PYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeec-----CcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 788888 8888899999999999999999999742 22223444555556789765444557888888888776
No 258
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=55.44 E-value=22 Score=28.64 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=27.6
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE 83 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~ 83 (205)
+|.|.+.|. +.=+.+++++..|+++|++|+.+-++-|.
T Consensus 2 ~V~Ii~gs~---SD~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 2 KVAIIMGST---SDLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp EEEEEESSG---GGHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred eEEEEeCCH---HHHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 466666544 55688999999999999999988888774
No 259
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=55.30 E-value=20 Score=31.36 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEeechhHHHHH----HhcccH
Q psy221 55 PRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVGGCDILLKL----HQSGEL 123 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IGG~del~~l----~e~GeL 123 (205)
+.++.|..+-..|..+ .|+|-.+..+.-+ +........+|.|+| +|..++.+-.+.++ .....|
T Consensus 156 ~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dl 230 (265)
T PF02114_consen 156 PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDL 230 (265)
T ss_dssp TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHH
T ss_pred CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHH
Confidence 8899999999988654 4567666654322 111223457899855 89887765443332 233478
Q ss_pred HHHHhhcCCc
Q psy221 124 VEQLEKGDQK 133 (205)
Q Consensus 124 ~~~L~~~~~~ 133 (205)
..+|...|+.
T Consensus 231 E~~L~~~G~l 240 (265)
T PF02114_consen 231 EAFLIEYGVL 240 (265)
T ss_dssp HHHHHTTTSS
T ss_pred HHHHHHcCCC
Confidence 8999988875
No 260
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=54.39 E-value=54 Score=24.75 Aligned_cols=35 Identities=14% Similarity=-0.095 Sum_probs=19.0
Q ss_pred CCChHHHHHHHHHHh-------CCCCeEEEEccCCHhHHHHH
Q psy221 55 PRCGFSNAVVQILRM-------HDVPYDSHDVLKDESIRNGI 89 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d~~~~~eL 89 (205)
.+||.|......|++ .++.+--+..+..+..++.+
T Consensus 39 ~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 80 (149)
T cd03018 39 AFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA 80 (149)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHH
Confidence 789999866544433 35555555544333333333
No 261
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=54.19 E-value=15 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHH----HhC----CCCeEEEEccCCH
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQIL----RMH----DVPYDSHDVLKDE 83 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~----gV~~~e~DI~~d~ 83 (205)
...|++|.. ..||+|.+.-..+ +.+ .|.|..+++..+.
T Consensus 13 ~~~v~~f~d-----~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 13 PITVTEFFD-----FQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK 58 (162)
T ss_dssp SEEEEEEE------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred CeEEEEEEC-----CCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence 346788999 9999999886555 343 5678888886553
No 262
>KOG4277|consensus
Probab=52.88 E-value=16 Score=33.21 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHhcCCc-EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEcc-----CCHhHHHHHHHHhCCCCccEE
Q psy221 28 STDVQKSIDEMVKKSK-VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVL-----KDESIRNGIKEYTSWPTIPQV 101 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~~-VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~-----~d~~~~~eL~~~~g~~tvPqv 101 (205)
-.++.++.++.-...- .|=|-. |||.+|++..-+.++-|.+...+.+. +|..-..++....|-..+|.|
T Consensus 30 VeDLddkFkdnkdddiW~VdFYA-----PWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 30 VEDLDDKFKDNKDDDIWFVDFYA-----PWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred hhhhhHHhhhcccCCeEEEEeec-----hhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 4556666655544332 333656 99999999999998877665443321 232223344555567778887
Q ss_pred -eeCCeEe
Q psy221 102 -FINGEFV 108 (205)
Q Consensus 102 -FI~G~~I 108 (205)
|..|.+.
T Consensus 105 k~~kgd~a 112 (468)
T KOG4277|consen 105 KFFKGDHA 112 (468)
T ss_pred EEecCCee
Confidence 6666543
No 263
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=52.86 E-value=53 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=15.9
Q ss_pred HHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH
Q psy221 36 DEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL 67 (205)
Q Consensus 36 ~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL 67 (205)
....+...++||.-+ ++||.|.....-|
T Consensus 20 ~~~~~~k~~ll~f~~----t~Cp~c~~~~~~l 47 (171)
T cd02969 20 ADFADGKALVVMFIC----NHCPYVKAIEDRL 47 (171)
T ss_pred HHHhCCCEEEEEEEC----CCCccHHHHHHHH
Confidence 343344555555443 8999997544444
No 264
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=52.27 E-value=51 Score=24.52 Aligned_cols=54 Identities=11% Similarity=-0.037 Sum_probs=27.3
Q ss_pred CCcEEEEEe-eCCCCCCChHHHHHHHH-------HHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221 41 KSKVVVFMK-GVPEAPRCGFSNAVVQI-------LRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQ 100 (205)
Q Consensus 41 ~~~VvlYsk-~~~~~~~Cp~C~~ak~l-------L~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq 100 (205)
...++|+.- + .+||.|.....- |...++.+--+.++.....++.+.+. + ..+|.
T Consensus 23 gk~~ll~f~~~----~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~-~-~~~~~ 84 (140)
T cd03017 23 GKPVVLYFYPK----DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY-G-LPFPL 84 (140)
T ss_pred CCcEEEEEeCC----CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C-CCceE
Confidence 344555443 2 689999754333 34446666555554444444333332 2 34563
No 265
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=52.09 E-value=66 Score=23.68 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=45.7
Q ss_pred hhhhcCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC
Q psy221 17 SRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP 96 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~ 96 (205)
..|++.+ -|...+....+.++.+...+.+..-+.. ..=..++++++.++++|..+.++.+. ++....+..
T Consensus 30 v~F~a~~-C~~C~~~~~~l~~l~~~~~~~vv~v~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~v~ 99 (127)
T cd03010 30 LNVWASW-CAPCREEHPVLMALARQGRVPIYGINYK-----DNPENALAWLARHGNPYAAVGFDPDG----RVGIDLGVY 99 (127)
T ss_pred EEEEcCc-CHHHHHHHHHHHHHHHhcCcEEEEEECC-----CCHHHHHHHHHhcCCCCceEEECCcc----hHHHhcCCC
Confidence 3455443 2333444566666666555655544321 22257888999999988666555443 344445777
Q ss_pred Ccc-EEeeC
Q psy221 97 TIP-QVFIN 104 (205)
Q Consensus 97 tvP-qvFI~ 104 (205)
.+| .++||
T Consensus 100 ~~P~~~~ld 108 (127)
T cd03010 100 GVPETFLID 108 (127)
T ss_pred CCCeEEEEC
Confidence 899 66664
No 266
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=51.53 E-value=65 Score=24.68 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=29.1
Q ss_pred cCCcEEEEEeeCCCCCCChHHHH-------HHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNA-------VVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~-------ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv 101 (205)
+.+.++|+.-.. .+||.|.. ..+-|...++.+--+.++..++.++.+++. + .++|.+
T Consensus 29 ~gk~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~-~-~~~~~l 92 (154)
T PRK09437 29 QGQRVLVYFYPK---AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKE-L-LNFTLL 92 (154)
T ss_pred CCCCEEEEEECC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C-CCCeEE
Confidence 445566655411 46888854 333344556666666655444444444332 2 356644
No 267
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=50.82 E-value=55 Score=25.90 Aligned_cols=36 Identities=8% Similarity=-0.135 Sum_probs=20.9
Q ss_pred CCcEEEEEe-eCCCCCCChHHHHHHHHHH-------hCCCCeEEEEcc
Q psy221 41 KSKVVVFMK-GVPEAPRCGFSNAVVQILR-------MHDVPYDSHDVL 80 (205)
Q Consensus 41 ~~~VvlYsk-~~~~~~~Cp~C~~ak~lL~-------~~gV~~~e~DI~ 80 (205)
...++||.- + .+||.|......|. +.|+.+-.+.++
T Consensus 29 Gk~vvl~F~~~----~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 29 GKWVVLFFYPL----DFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred CCEEEEEEECC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 345666553 1 68999998655553 345555554443
No 268
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=50.71 E-value=19 Score=29.79 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCeEEEEcc-CCHhHHHHHH------HHhCCCCccEEeeCCeEeechh
Q psy221 61 NAVVQILRMHDVPYDSHDVL-KDESIRNGIK------EYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~-~d~~~~~eL~------~~~g~~tvPqvFI~G~~IGG~d 112 (205)
...++++.+.|++-+..+-. .++.+++.+. +..|-..+|.++|||+++=+.+
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~ 182 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQ 182 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccc
Confidence 46777788888865443321 2233333322 2347789999999999864433
No 269
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.34 E-value=43 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCC
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKD 82 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d 82 (205)
+.=|..+++..+|+.+||+|+.+=.+-|
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaH 36 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAH 36 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcc
Confidence 6678999999999999999998888877
No 270
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=50.12 E-value=62 Score=25.29 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcccHHHHHhhcCCccccce
Q psy221 61 NAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFI 138 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~GeL~~~L~~~~~~~~~~~ 138 (205)
+++++.|+++|++++.+|+... ++..+.|. ..-.||+.| |....+.+..++-.|.+.|+..- ... .
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~------~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~~~--~~G-~ 70 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIR------EADAIFLGG---GDTFRLLRQLKETGLDEAIREAY--RKG-G 70 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHH------HSSEEEE-----S-HHHHHHHHHHTTHHHHHHHHH--HTT-S
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHH------hCCEEEECC---CCHHHHHHHHHhCCHHHHHHHHH--HCC-C
Confidence 6889999999999999998774 33333333 245666655 22233444444445667676541 112 3
Q ss_pred eecccCCCC-cccCc
Q psy221 139 LINYISGDA-VRCYE 152 (205)
Q Consensus 139 ~~~~gcGgf-v~C~~ 152 (205)
++++.+.|+ +.+..
T Consensus 71 vi~G~SAGA~i~~~~ 85 (154)
T PF03575_consen 71 VIIGTSAGAMILGPS 85 (154)
T ss_dssp EEEEETHHHHCTSSB
T ss_pred EEEEEChHHhhccCc
Confidence 445567664 43333
No 271
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=49.63 E-value=79 Score=23.39 Aligned_cols=57 Identities=16% Similarity=-0.002 Sum_probs=28.2
Q ss_pred cCCcEEEEEe-eCCCCCCChHHHHHHHHHHh-------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221 40 KKSKVVVFMK-GVPEAPRCGFSNAVVQILRM-------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101 (205)
Q Consensus 40 ~~~~VvlYsk-~~~~~~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv 101 (205)
...+++|+.- + .+|+.|.....-|.+ .++.+-.+.++..... ..+.+..+...+|.+
T Consensus 21 ~gk~~ll~f~~~----~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~-~~~~~~~~~~~~~~l 85 (140)
T cd02971 21 KGKWVVLFFYPK----DFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSH-KAWAEKEGGLNFPLL 85 (140)
T ss_pred CCCeEEEEEeCC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHhcccCCCceEE
Confidence 3445555443 2 689998875444432 4555555555432222 233332224456644
No 272
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.58 E-value=66 Score=24.20 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=37.9
Q ss_pred cCCcEEEEEeeCCCCCCChHH------HHHHHHHHhC------C--CCeEEEEccCC--HhHHHHHHHHh--CCCCccEE
Q psy221 40 KKSKVVVFMKGVPEAPRCGFS------NAVVQILRMH------D--VPYDSHDVLKD--ESIRNGIKEYT--SWPTIPQV 101 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C------~~ak~lL~~~------g--V~~~e~DI~~d--~~~~~eL~~~~--g~~tvPqv 101 (205)
+..+++||... .-|.-| +...++|+.. + ..|+.+||... .+...++.+.. ..--+|.|
T Consensus 3 ~~~~l~VyGae----~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPli 78 (106)
T COG4837 3 NEAKLVVYGAE----VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLI 78 (106)
T ss_pred ceeEEEEecch----hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEE
Confidence 44567778663 335444 3444555422 2 34678888543 23333333322 33468999
Q ss_pred eeCCeEeec
Q psy221 102 FINGEFVGG 110 (205)
Q Consensus 102 FI~G~~IGG 110 (205)
.|+|+.|+.
T Consensus 79 vvedeiVae 87 (106)
T COG4837 79 VVEDEIVAE 87 (106)
T ss_pred EEcceEeec
Confidence 999999963
No 273
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=46.74 E-value=39 Score=28.61 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=41.0
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEcc--CCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVL--KDESIRNGIKEYTSWPTIPQVFINGE 106 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~--~d~~~~~eL~~~~g~~tvPqvFI~G~ 106 (205)
...++.+|.+ +.|+.|......|...+-+++.+-|. .|+ +.++.+.....+|.--|...
T Consensus 108 ~~~rlalFvk-----d~C~~C~~~~~~l~a~~~~~Diylvgs~~dD---~~Ir~WA~~~~Idp~~V~~~ 168 (200)
T TIGR03759 108 GGGRLALFVK-----DDCVACDARVQRLLADNAPLDLYLVGSQGDD---ERIRQWANRHQIDPAKVRSR 168 (200)
T ss_pred CCCeEEEEeC-----CCChHHHHHHHHHhcCCCceeEEEecCCCCH---HHHHHHHHHcCCCHHHeecC
Confidence 4678999999 99999999999998888888888887 333 23333333334555444443
No 274
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=44.56 E-value=1.7e+02 Score=23.59 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221 27 YSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE 106 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~ 106 (205)
.-+++.+-++++...-.|+|-+. +.-. .++++++-.|++.+.+--..|++.+..+.+-++.+.--.+.|+.
T Consensus 31 lf~ev~e~iqeL~d~V~i~IASg-----Dr~g---sl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vmVGn- 101 (152)
T COG4087 31 LFSEVSETIQELHDMVDIYIASG-----DRKG---SLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVGN- 101 (152)
T ss_pred EcHhhHHHHHHHHHhheEEEecC-----Ccch---HHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEEecC-
Confidence 35667778888887744555444 3333 67888888899988888888888877777666666666677664
Q ss_pred EeechhHHHHHHh
Q psy221 107 FVGGCDILLKLHQ 119 (205)
Q Consensus 107 ~IGG~del~~l~e 119 (205)
|..|+..|.+
T Consensus 102 ---GaND~laLr~ 111 (152)
T COG4087 102 ---GANDILALRE 111 (152)
T ss_pred ---CcchHHHhhh
Confidence 4455555443
No 275
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=43.94 E-value=75 Score=25.22 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCcc-EEeeC--Ce
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIP-QVFIN--GE 106 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvP-qvFI~--G~ 106 (205)
.....++++.+.+ +.++.-+.. ..=..+++++++++++|..+..+.+.++ ....+...+| .++|| |+
T Consensus 80 ~~~p~l~~l~~~~-~~vi~V~~~-----~~~~~~~~~~~~~~~~f~~v~~D~~~~~----~~~~~v~~~P~~~~id~~G~ 149 (173)
T TIGR00385 80 AEHPYLNELAKDG-LPIVGVDYK-----DQSQNALKFLKELGNPYQAILIDPNGKL----GLDLGVYGAPETFLVDGNGV 149 (173)
T ss_pred HHHHHHHHHHHcC-CEEEEEECC-----CChHHHHHHHHHcCCCCceEEECCCCch----HHhcCCeeCCeEEEEcCCce
Confidence 3445556665554 444433221 1114567899999998876555544433 3334556789 56664 65
No 276
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=43.57 E-value=42 Score=25.80 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCC--CCccEEeeCC
Q psy221 55 PRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSW--PTIPQVFING 105 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~--~tvPqvFI~G 105 (205)
-.||+|..+.-+|..+ .++++.+|- +.-|.++.++.|. .+.|++..++
T Consensus 22 f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f---~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFPDLRERLDVRRVDF---PRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred EECCchHHHHhHHhhChhhhhcccEEEeCC---CCchHHHHHHhChhccCCCEEEeCC
Confidence 5799999999999876 334444443 3346788888774 5899998865
No 277
>PTZ00056 glutathione peroxidase; Provisional
Probab=43.15 E-value=95 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHH----h---CCCCeEEEEc
Q psy221 55 PRCGFSNAVVQILR----M---HDVPYDSHDV 79 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~----~---~gV~~~e~DI 79 (205)
+|||.|.+-...|. + .|+.+--+++
T Consensus 49 swC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 49 SKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 89999986433332 2 3555555543
No 278
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=42.79 E-value=21 Score=25.64 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCCeEEEEc
Q psy221 62 AVVQILRMHDVPYDSHDV 79 (205)
Q Consensus 62 ~ak~lL~~~gV~~~e~DI 79 (205)
.++++++++||+..|+++
T Consensus 34 tvkd~IEsLGVP~tEV~~ 51 (81)
T PF14451_consen 34 TVKDVIESLGVPHTEVGL 51 (81)
T ss_pred cHHHHHHHcCCChHHeEE
Confidence 678888888888777664
No 279
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=42.41 E-value=38 Score=33.47 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=48.4
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC----CHhHHHHHHHHhCCCCccEEeeCCeEeechh-HHH-
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK----DESIRNGIKEYTSWPTIPQVFINGEFVGGCD-ILL- 115 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~----d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d-el~- 115 (205)
..|+|.+.| .....|.+|.+.|++.||..+.+|+.. |.+....+.+. .-..|.+..-.+||+- +|.
T Consensus 545 ~dvtIva~G----~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~----~~~vVt~Ee~~~GG~Gs~Va~ 616 (641)
T PLN02234 545 ERVALLGYG----SAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS----HEVLITVEEGSIGGFGSHVVQ 616 (641)
T ss_pred CCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh----CCEEEEECCCCCCcHHHHHHH
Confidence 467777665 566789999999999999999999863 44333333221 1233445554569884 333
Q ss_pred HHHhcccHHHHH
Q psy221 116 KLHQSGELVEQL 127 (205)
Q Consensus 116 ~l~e~GeL~~~L 127 (205)
.+.++|.+++.+
T Consensus 617 ~l~e~~~~~~~~ 628 (641)
T PLN02234 617 FLALDGLLDGKL 628 (641)
T ss_pred HHHHcCCCCCCc
Confidence 344555555544
No 280
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=42.32 E-value=1e+02 Score=23.10 Aligned_cols=54 Identities=2% Similarity=-0.195 Sum_probs=27.2
Q ss_pred CCcEEEEEeeCCCCCC-ChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCcc
Q psy221 41 KSKVVVFMKGVPEAPR-CGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIP 99 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~-Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvP 99 (205)
..++||+.-. .+ ||.|..-...|.++ ++.+--+.++..... +++.+..+...+|
T Consensus 26 gk~vvl~f~~----~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~-~~~~~~~~~~~~~ 85 (143)
T cd03014 26 GKVKVISVFP----SIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQ-KRWCGAEGVDNVT 85 (143)
T ss_pred CCeEEEEEEc----CCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHH-HHHHHhcCCCCce
Confidence 3456665441 45 79999876666432 455555554432223 3333333433455
No 281
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=42.30 E-value=1.1e+02 Score=21.03 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 58 GFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 58 p~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
..=...++.+++++.++..+....+. ...+.+..+-..+|.++|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 45 EDEEEWKKFLKKNNFPWYNVPFDDDN--NSELLKKYGINGIPTLVL 88 (95)
T ss_dssp SSHHHHHHHHHTCTTSSEEEETTTHH--HHHHHHHTT-TSSSEEEE
T ss_pred CCHHHHHHHHHhcCCCceEEeeCcch--HHHHHHHCCCCcCCEEEE
Confidence 33468899999998887777765444 568888888889999987
No 282
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=41.83 E-value=87 Score=24.15 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=13.8
Q ss_pred CcEEE-EEeeCCCCCCChHHHHHHHHHHh
Q psy221 42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM 69 (205)
Q Consensus 42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~ 69 (205)
..|+| |.. .||| |.+-...|++
T Consensus 23 k~vvl~fwa-----twC~-C~~e~p~l~~ 45 (152)
T cd00340 23 KVLLIVNVA-----SKCG-FTPQYEGLEA 45 (152)
T ss_pred CEEEEEEEc-----CCCC-chHHHHHHHH
Confidence 44555 555 8999 9885555543
No 283
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=41.48 E-value=99 Score=24.71 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=35.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC-----------CCccEEeeCCe
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW-----------PTIPQVFINGE 106 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~-----------~tvPqvFI~G~ 106 (205)
|+|+|-|-........-.++.+.+++.||.+-.+=|.. ...+.|.++.+. .-.|++||+++
T Consensus 113 iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 113 LLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred EEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 45555543211223334556667888999877777755 234556666532 13588888864
No 284
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=41.46 E-value=91 Score=24.02 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=12.8
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHH
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQIL 67 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL 67 (205)
|+.|.. ++||.|.+-..-|
T Consensus 26 vv~~~a-----s~C~~c~~~~~~l 44 (153)
T TIGR02540 26 LVVNVA-----SECGFTDQNYRAL 44 (153)
T ss_pred EEEEeC-----CCCCchhhhHHHH
Confidence 345666 8999998755433
No 285
>KOG2961|consensus
Probab=40.00 E-value=2.1e+02 Score=23.59 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=62.1
Q ss_pred HHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC----CccEEeeCCeEe
Q psy221 33 KSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP----TIPQVFINGEFV 108 (205)
Q Consensus 33 ~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~----tvPqvFI~G~~I 108 (205)
+.++.+-.++.|.|++.|......=++=.+|+.+=++.||++-.+.+..-.-..+++...+|.. .--.++|+++..
T Consensus 71 e~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlf 150 (190)
T KOG2961|consen 71 ERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLF 150 (190)
T ss_pred HHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccchh
Confidence 4455666778899999876554555666789999899999998888766544444555555532 234678888764
Q ss_pred echhHHHHHHhcccHHHHHh
Q psy221 109 GGCDILLKLHQSGELVEQLE 128 (205)
Q Consensus 109 GG~del~~l~e~GeL~~~L~ 128 (205)
.|+.-.+..|.+.-+++
T Consensus 151 ---TDI~~aN~mGs~gVw~~ 167 (190)
T KOG2961|consen 151 ---TDIVYANRMGSLGVWTE 167 (190)
T ss_pred ---hhHhhhhhccceeEEec
Confidence 55665566666554443
No 286
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.55 E-value=80 Score=25.16 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCeEEEEc-cCCHhHHHHHHH------HhCCCCccEEeeCCeE-eechhHHHH
Q psy221 61 NAVVQILRMHDVPYDSHDV-LKDESIRNGIKE------YTSWPTIPQVFINGEF-VGGCDILLK 116 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI-~~d~~~~~eL~~------~~g~~tvPqvFI~G~~-IGG~del~~ 116 (205)
..+.+++.+.|++.+...- ..+++.++++.+ ..|-..+|.++|||++ +.|+.....
T Consensus 132 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 132 DVLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred HHHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCHHH
Confidence 3566777777776433221 112222223222 2377789999999885 577664433
No 287
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.51 E-value=1.4e+02 Score=21.40 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeCCCCCCCh--HHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH
Q psy221 29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCG--FSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE 91 (205)
Q Consensus 29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp--~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~ 91 (205)
......++..++...+||..+ ..+. .++.+++.-.++++|+....-..-..+.+.|.+
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t-----~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFT-----DYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEe-----CCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHh
Confidence 334455788888888888877 3343 578888888899998887764444455555543
No 288
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=39.11 E-value=63 Score=30.47 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHHhC-----CCCeEEEE
Q psy221 55 PRCGFSNAVVQILRMH-----DVPYDSHD 78 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~-----gV~~~e~D 78 (205)
..|++|..++++|++. +|.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~s~~i~~~~~~ 56 (517)
T PRK15317 28 DDSEKSAELKELLEEIASLSDKITVEEDS 56 (517)
T ss_pred CCCchHHHHHHHHHHHHHhCCceEEEEcc
Confidence 4599999999999765 44555544
No 289
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=39.04 E-value=1.3e+02 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=18.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHH-------HhCCCCeEEEEc
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQIL-------RMHDVPYDSHDV 79 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL-------~~~gV~~~e~DI 79 (205)
|+.|.. +||+.|..-...| ...|+.+--++.
T Consensus 103 vl~FwA-----swCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 103 LIVNVA-----SKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred EEEEEc-----CCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 344555 8999997644333 334566655554
No 290
>PLN02412 probable glutathione peroxidase
Probab=38.58 E-value=1.8e+02 Score=23.02 Aligned_cols=17 Identities=12% Similarity=0.569 Sum_probs=11.5
Q ss_pred CcEEE-EEeeCCCCCCChHHHHH
Q psy221 42 SKVVV-FMKGVPEAPRCGFSNAV 63 (205)
Q Consensus 42 ~~Vvl-Ysk~~~~~~~Cp~C~~a 63 (205)
..|+| |.. +|||.|.+-
T Consensus 30 k~vlv~f~a-----~~C~~c~~e 47 (167)
T PLN02412 30 KVLLIVNVA-----SKCGLTDSN 47 (167)
T ss_pred CEEEEEEeC-----CCCCChHHH
Confidence 44555 555 899999863
No 291
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=38.06 E-value=2.2e+02 Score=23.21 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHhcCC---cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC---Ccc--
Q psy221 28 STDVQKSIDEMVKKS---KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP---TIP-- 99 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~---~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~---tvP-- 99 (205)
.+++.++++++.+.. +|+|+|.+....+ =+.=.+|+.+-+.+||++-.+..-.- .-.+++.+..+.. +-|
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lgIpvl~h~~kKP-~~~~~i~~~~~~~~~~~~p~e 138 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSD-DPDGERAEALEKALGIPVLRHRAKKP-GCFREILKYFKCQKVVTSPSE 138 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCccc-CccHHHHHHHHHhhCCcEEEeCCCCC-ccHHHHHHHHhhccCCCCchh
Confidence 677888888887653 5999988542222 23447888888999998765554332 3233333333322 123
Q ss_pred EEeeCCeEe
Q psy221 100 QVFINGEFV 108 (205)
Q Consensus 100 qvFI~G~~I 108 (205)
.++|++++.
T Consensus 139 iavIGDrl~ 147 (168)
T PF09419_consen 139 IAVIGDRLF 147 (168)
T ss_pred EEEEcchHH
Confidence 667777653
No 292
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=36.98 E-value=2.7e+02 Score=23.90 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHhc--CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC-eEEEEccC-----CHhHHHHHHHHhCCCCcc
Q psy221 28 STDVQKSIDEMVK--KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP-YDSHDVLK-----DESIRNGIKEYTSWPTIP 99 (205)
Q Consensus 28 ~~~~~~~l~~~~~--~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~-~~e~DI~~-----d~~~~~eL~~~~g~~tvP 99 (205)
..++.+++-++.. ..+|++..+.. .+.=.++...++.|+++|+. ++.+++.. +++..+.|.. .-
T Consensus 13 ~~~i~~~~~~lag~~~~rI~~iptAS--~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~------ad 84 (250)
T TIGR02069 13 DREILREFVSRAGGEDAIIVIITSAS--EEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSN------AT 84 (250)
T ss_pred hHHHHHHHHHHhCCCCceEEEEeCCC--CChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhh------CC
Confidence 3445555555553 23566654421 12335688999999999994 78888853 2344444432 34
Q ss_pred EEeeCCeEeechhHHHHHHhcccHHHHHhhcCCccccceeecccCCCC
Q psy221 100 QVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDA 147 (205)
Q Consensus 100 qvFI~G~~IGG~del~~l~e~GeL~~~L~~~~~~~~~~~~~~~gcGgf 147 (205)
.||+.| |.--.+.+..+.-.|...|+.. .+.. .++.+-+.|+
T Consensus 85 ~I~~~G---Gnq~~l~~~l~~t~l~~~l~~~--~~~G-~vi~G~SAGA 126 (250)
T TIGR02069 85 GIFFTG---GDQLRITSLLGDTPLLDRLRKR--VHEG-IILGGTSAGA 126 (250)
T ss_pred EEEEeC---CCHHHHHHHHcCCcHHHHHHHH--HHcC-CeEEEccHHH
Confidence 455544 1222334333444555566543 1222 4445566664
No 293
>PRK11914 diacylglycerol kinase; Reviewed
Probab=36.63 E-value=2.8e+02 Score=24.00 Aligned_cols=6 Identities=50% Similarity=0.650 Sum_probs=2.4
Q ss_pred ccEEee
Q psy221 98 IPQVFI 103 (205)
Q Consensus 98 vPqvFI 103 (205)
+|.-+|
T Consensus 89 ~~lgii 94 (306)
T PRK11914 89 IPLGII 94 (306)
T ss_pred CcEEEE
Confidence 443333
No 294
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=36.39 E-value=42 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=26.0
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHH----hC-CCCeEEEEccCC
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILR----MH-DVPYDSHDVLKD 82 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~-gV~~~e~DI~~d 82 (205)
+|++|.. ..||||..+...|+ .+ +++++.+-+...
T Consensus 1 ~i~~~~D-----~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFD-----FICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEB-----TTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEe-----CCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4788988 99999998877664 44 677776666543
No 295
>PTZ00256 glutathione peroxidase; Provisional
Probab=36.26 E-value=1e+02 Score=24.73 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=15.3
Q ss_pred CCChHHHHHHHHHH-------hCCCCeEEEEc
Q psy221 55 PRCGFSNAVVQILR-------MHDVPYDSHDV 79 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~-------~~gV~~~e~DI 79 (205)
.|||.|.+-...|+ ..|+.+--+++
T Consensus 51 twCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 51 CKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 89999997443333 33555555543
No 296
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=36.23 E-value=1.6e+02 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCC
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKD 82 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d 82 (205)
+.+.-...+..+++..|+++..++...+
T Consensus 7 ~~~gN~~~l~~~~~~~G~~~~~~~~~~~ 34 (194)
T cd01750 7 PDISNFTDLDPLAREPGVDVRYVEVPEG 34 (194)
T ss_pred CCccCHHHHHHHHhcCCceEEEEeCCCC
Confidence 4466667888999999999998887655
No 297
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=35.83 E-value=31 Score=28.91 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCeEEEEccCCH-hHHHHHHHHhCCC--CccEEeeCCe
Q psy221 61 NAVVQILRMHDVPYDSHDVLKDE-SIRNGIKEYTSWP--TIPQVFINGE 106 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d~-~~~~eL~~~~g~~--tvPqvFI~G~ 106 (205)
..+|++|+++||++-.--+...+ +.++....+.+.. -=|||..+|+
T Consensus 5 yqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgR 53 (202)
T PF08442_consen 5 YQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGR 53 (202)
T ss_dssp HHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTT
T ss_pred HHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCc
Confidence 36899999999997766666554 4444444443332 2288888875
No 298
>KOG1672|consensus
Probab=35.79 E-value=1.5e+02 Score=25.25 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=65.3
Q ss_pred HHHhhhhhhhcCCCCCCC--hHHHHHHHHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHH---hCCC--CeEEEEccCC
Q psy221 11 PRLAINSRFHNAWRTPYS--TDVQKSIDEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILR---MHDV--PYDSHDVLKD 82 (205)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~---~~gV--~~~e~DI~~d 82 (205)
+-+..--+|.......+. .+-.+.+....++.+||+ |-. +..-.|+-+-.=|+ ...+ .|.-+|....
T Consensus 52 k~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~-----~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~ 126 (211)
T KOG1672|consen 52 KEQEKRKEWLSKGHGEYEEVASEKDFFEEVKKSEKVVCHFYR-----PEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA 126 (211)
T ss_pred HHHHHHHHHHHcCCceEEEeccHHHHHHHhhcCceEEEEEEc-----CCCcceehHHHHHHHHHHhcccceEEEEecccC
Confidence 344444556666544442 223455666667777766 555 66666766655554 4333 5666676665
Q ss_pred HhHHHHHHHHhCCCCccEE--eeCCe---EeechhHHHH--HHhcccHHHHHhhcCCc
Q psy221 83 ESIRNGIKEYTSWPTIPQV--FINGE---FVGGCDILLK--LHQSGELVEQLEKGDQK 133 (205)
Q Consensus 83 ~~~~~eL~~~~g~~tvPqv--FI~G~---~IGG~del~~--l~e~GeL~~~L~~~~~~ 133 (205)
|- |...++-..+|.| |.||+ +|-||+++-. =++...|...|...++.
T Consensus 127 PF----lv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 127 PF----LVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred ce----eeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 63 4444556688987 77885 5667776533 23334566666665543
No 299
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=34.10 E-value=1.4e+02 Score=24.45 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHh----------C-------------CCCccEEee--CCeE
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYT----------S-------------WPTIPQVFI--NGEF 107 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~----------g-------------~~tvPqvFI--~G~~ 107 (205)
+.-+.-+++-++|+++||+|+.+=++-| |+...+..+-. | ..++|+|=| ..+.
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~ 92 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKA 92 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCcccc
Confidence 5667778999999999999999999987 44333333211 1 246787743 6677
Q ss_pred eechhHHHH
Q psy221 108 VGGCDILLK 116 (205)
Q Consensus 108 IGG~del~~ 116 (205)
++|.|.+..
T Consensus 93 L~GlDSL~S 101 (162)
T COG0041 93 LSGLDSLLS 101 (162)
T ss_pred ccchHHHHH
Confidence 778776544
No 300
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=33.95 E-value=58 Score=24.35 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=31.8
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEcc
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVL 80 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~ 80 (205)
+...|+|.+.| +....+.+|.+.|++.|++...+|+.
T Consensus 8 ~g~di~iia~G----~~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 8 EGADITIIAYG----SMVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSSEEEEEET----THHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCEEEEeeh----HHHHHHHHHHHHHHHcCCceeEEeeE
Confidence 34678888887 77899999999999999999988874
No 301
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.51 E-value=2.2e+02 Score=25.52 Aligned_cols=86 Identities=7% Similarity=0.042 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEE----------ccCCHhHHHHHH---HHh
Q psy221 27 YSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHD----------VLKDESIRNGIK---EYT 93 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~D----------I~~d~~~~~eL~---~~~ 93 (205)
.+=++.+.+.++++..-+.|++- .++..+..+..+.++++||+..-. +...|.+..++. +..
T Consensus 48 dsf~~~~~~C~~~~~gV~AI~Gp-----~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~ 122 (371)
T cd06388 48 NSFAVTNAFCSQYSRGVFAIFGL-----YDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHY 122 (371)
T ss_pred ChhHHHHHHHHHHhCCceEEEec-----CCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhc
Confidence 35567788889999999999988 788889999999999999976433 223344444433 345
Q ss_pred CCCCccEEeeCCeEeechhHHHHH
Q psy221 94 SWPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 94 g~~tvPqvFI~G~~IGG~del~~l 117 (205)
+|+++=.|+-.+.-++..+++.+.
T Consensus 123 ~wk~vaiiYd~~~~~~~lq~l~~~ 146 (371)
T cd06388 123 EWNRFVFLYDTDRGYSILQAIMEK 146 (371)
T ss_pred CceEEEEEecCCccHHHHHHHHHh
Confidence 888888888656555666665443
No 302
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=33.47 E-value=73 Score=33.28 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=17.8
Q ss_pred hcCCcEEE-EEeeCCCCCCChHHHHHHHHHHh
Q psy221 39 VKKSKVVV-FMKGVPEAPRCGFSNAVVQILRM 69 (205)
Q Consensus 39 ~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~ 69 (205)
.+...|+| |.. +||+.|+.....|++
T Consensus 418 lkGK~vll~FWA-----sWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 418 LKGKVVILDFWT-----YCCINCMHVLPDLEF 444 (1057)
T ss_pred cCCCEEEEEEEC-----CcChhHHhHhHHHHH
Confidence 34445555 555 999999987777653
No 303
>PLN02790 transketolase
Probab=33.38 E-value=1.2e+02 Score=29.82 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=43.4
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHH----HHHHhCCCCccEEeeCCeEeechh
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG----IKEYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~e----L~~~~g~~tvPqvFI~G~~IGG~d 112 (205)
..|+|...| +.-..|.+|.+.|++.|+....+|+..-..+.+. ..+..+...-+.|.|..-.++|+.
T Consensus 541 ~dv~iia~G----~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~ 611 (654)
T PLN02790 541 PDLILIGTG----SELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWE 611 (654)
T ss_pred CCEEEEEcC----HHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHH
Confidence 467777776 6677899999999999999999998643222121 223333444456666554556654
No 304
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=33.33 E-value=5.3e+02 Score=26.13 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=37.0
Q ss_pred cccceeecccCCCCcccCcccCCCCccccCCCCccccccccce--eeEecCCCCcc
Q psy221 134 RKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERH--ISVECNTEESH 187 (205)
Q Consensus 134 ~~~~~~~~~gcGgfv~C~~CsGS~k~~~~~~~g~~~~~~~~~~--~~~~c~~~~~~ 187 (205)
.|...+.|.-||--..|.+|+.+--.. ...|..+|-+|..+ ++-.|+.+.|-
T Consensus 431 Gys~~l~C~~Cg~v~~Cp~Cd~~lt~H--~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 431 GYAPLLLCRDCGYIAECPNCDSPLTLH--KATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CccceeecccCCCcccCCCCCcceEEe--cCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 455667889999999999999983322 22366666666554 67788888775
No 305
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.05 E-value=20 Score=30.83 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=19.5
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCC
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDV 72 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV 72 (205)
+|.||+- .-||||...+.-|+..-.
T Consensus 7 ~I~v~sD-----~vCPwC~ig~~rL~ka~~ 31 (225)
T COG2761 7 EIDVFSD-----VVCPWCYIGKRRLEKALA 31 (225)
T ss_pred EEEEEeC-----CcCchhhcCHHHHHHHHH
Confidence 5677777 899999988888876533
No 306
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.99 E-value=1.2e+02 Score=28.75 Aligned_cols=65 Identities=15% Similarity=0.495 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHhC--CC-CeEEEEccCCHhH-HHHHHHH---hCC--CCccEEee-------CCeEeechhHHHHHH
Q psy221 55 PRCGFSNAVVQILRMH--DV-PYDSHDVLKDESI-RNGIKEY---TSW--PTIPQVFI-------NGEFVGGCDILLKLH 118 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~--gV-~~~e~DI~~d~~~-~~eL~~~---~g~--~tvPqvFI-------~G~~IGG~del~~l~ 118 (205)
..|||=.++.-+-+.+ +. .|..+-|..+|+. .+.|..+ .|| ..-|.|.= .|.+|||+.|.+++.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 4799877776554443 33 5999999988743 4444444 354 46798853 678999999988865
Q ss_pred h
Q psy221 119 Q 119 (205)
Q Consensus 119 e 119 (205)
+
T Consensus 82 ~ 82 (452)
T cd05295 82 E 82 (452)
T ss_pred H
Confidence 4
No 307
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=32.57 E-value=34 Score=23.36 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=14.0
Q ss_pred EeeCCeEeechhHHHHHH
Q psy221 101 VFINGEFVGGCDILLKLH 118 (205)
Q Consensus 101 vFI~G~~IGG~del~~l~ 118 (205)
||+||.++|=.++-.+|.
T Consensus 1 VFlNG~~iG~~~~p~~l~ 18 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELV 18 (63)
T ss_dssp EEETTEEEEEESSHHHHH
T ss_pred CEECCEEEEEEcCHHHHH
Confidence 799999999877654443
No 308
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=32.46 E-value=1.7e+02 Score=23.62 Aligned_cols=38 Identities=16% Similarity=-0.036 Sum_probs=21.7
Q ss_pred cCCcEEEEEe-eCCCCCCChHHHHHHHHH-------HhCCCCeEEEEccC
Q psy221 40 KKSKVVVFMK-GVPEAPRCGFSNAVVQIL-------RMHDVPYDSHDVLK 81 (205)
Q Consensus 40 ~~~~VvlYsk-~~~~~~~Cp~C~~ak~lL-------~~~gV~~~e~DI~~ 81 (205)
+...++||.- + .+||.|..-...| .+.|+.+--+.++.
T Consensus 30 ~Gk~vvl~F~p~----~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPA----DFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECC----CcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 3345666552 1 7899998744333 44566655555443
No 309
>PRK14873 primosome assembly protein PriA; Provisional
Probab=32.41 E-value=36 Score=33.72 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=32.1
Q ss_pred cccceeecccCCCCcccCcccCCCCccccCCCCccccccccc-eeeEecCCCCcc
Q psy221 134 RKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKER-HISVECNTEESH 187 (205)
Q Consensus 134 ~~~~~~~~~gcGgfv~C~~CsGS~k~~~~~~~g~~~~~~~~~-~~~~~c~~~~~~ 187 (205)
.|...+.|..||....|..|+++-..... .+..+|-+|.. ...-.|+.+.|.
T Consensus 379 Gyap~l~C~~Cg~~~~C~~C~~~L~~h~~--~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 379 GYVPSLACARCRTPARCRHCTGPLGLPSA--GGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred CCCCeeEhhhCcCeeECCCCCCceeEecC--CCeeECCCCcCCCcCccCCCCcCC
Confidence 56667789999999999999998554321 12222222221 124467777665
No 310
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=31.12 E-value=1.6e+02 Score=24.10 Aligned_cols=27 Identities=7% Similarity=-0.034 Sum_probs=16.8
Q ss_pred CCChHHHHHHHH-------HHhCCCCeEEEEccC
Q psy221 55 PRCGFSNAVVQI-------LRMHDVPYDSHDVLK 81 (205)
Q Consensus 55 ~~Cp~C~~ak~l-------L~~~gV~~~e~DI~~ 81 (205)
.+||.|..-..- |++.|+.+--+.++.
T Consensus 36 ~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 36 DFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 688888774333 344566666665554
No 311
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=30.96 E-value=2.8e+02 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEEccC
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHDVLK 81 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~ 81 (205)
..|.+-..+++.|+..|+.++.+++..
T Consensus 11 ~~~e~~~~~~~~l~~~g~~~~~~~~~~ 37 (200)
T PRK13527 11 DVEEHIDALKRALDELGIDGEVVEVRR 37 (200)
T ss_pred ccHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 678888899999999999988888754
No 312
>KOG4700|consensus
Probab=30.86 E-value=1.2e+02 Score=25.54 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCCeEEEEccC
Q psy221 62 AVVQILRMHDVPYDSHDVLK 81 (205)
Q Consensus 62 ~ak~lL~~~gV~~~e~DI~~ 81 (205)
.+-+.|-.++|++..+-|+.
T Consensus 51 ava~~l~~l~vqiS~V~vt~ 70 (207)
T KOG4700|consen 51 AVAEMLGRLQVQISRVRVTR 70 (207)
T ss_pred HHHHHHhhcceeEEEEEecc
Confidence 45577777888777666644
No 313
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=29.77 E-value=1.5e+02 Score=29.20 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=45.3
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC-CHhHHHHHHHHhCCCCccEEeeCCeEeechhH
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK-DESIRNGIKEYTSWPTIPQVFINGEFVGGCDI 113 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~-d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~de 113 (205)
..|+|.+.| ..-..|.+|.+.|++.|+..+.+|+.. .|--.+.+.++.. .....+.......||+..
T Consensus 505 ~ditIva~G----~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k-~~~vvvveE~~~~gG~g~ 572 (641)
T PRK12571 505 PDVAILSVG----AHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVR-HHIVVIVEEQGAMGGFGA 572 (641)
T ss_pred CCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhh-hCCEEEEECCCCCCCHHH
Confidence 467777665 566789999999999999999999864 2222233333322 234667777777798864
No 314
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.74 E-value=57 Score=30.13 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=38.5
Q ss_pred hhhhhhhcCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEE
Q psy221 14 AINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDS 76 (205)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e 76 (205)
.+++.||+...--........+...+++. ||..|.. +.|+.|++..++|..+||+.+.
T Consensus 143 iS~SsY~~dTk~id~~~p~~alTkavKkr---iYlgs~~--~ns~~~e~l~~v~aq~~I~v~~ 200 (431)
T COG4408 143 ISLSSYYADTKYIDAEQPNRALTKAVKKR---IYLGSQH--GNSGSAEMLTAVLAQHGIDVEP 200 (431)
T ss_pred EEeehhcccceeecccCcchHHHHHHhHh---eeeccCC--CCChHHHHHHHHHHhcCCceEE
Confidence 34466666654333444555566665554 5655444 6799999999999999998653
No 315
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=29.48 E-value=74 Score=29.56 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC-CCCc--cEEeeCCe
Q psy221 61 NAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS-WPTI--PQVFINGE 106 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g-~~tv--PqvFI~G~ 106 (205)
.++|++|+++|||.-.--+...++--+++.+..| .+.+ +||.++|+
T Consensus 6 YqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGR 54 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGR 54 (387)
T ss_pred HHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCc
Confidence 4789999999999776666555554455554444 3333 89999885
No 316
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=29.26 E-value=2.5e+02 Score=21.20 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=45.0
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeechhHH
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGCDIL 114 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~del 114 (205)
....|+|..|-|.. +|-+..+--+| +..+-.+.---+. ++...+|....|-...|.+ |-+|+++|-...+
T Consensus 26 ~~~~vlf~~gDp~r--~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 26 PGDAVLFFAGDPAR--FPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp CSCEEEEESS-TTT--STTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESS
T ss_pred CCcEEEEECCCCCc--CcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCEEEEEecCe
Confidence 45678888876644 44444444444 3344444433333 6777899999999889987 4499999976654
Q ss_pred HH
Q psy221 115 LK 116 (205)
Q Consensus 115 ~~ 116 (205)
+.
T Consensus 102 ~d 103 (107)
T PF07449_consen 102 RD 103 (107)
T ss_dssp ST
T ss_pred ec
Confidence 43
No 317
>KOG0191|consensus
Probab=29.13 E-value=90 Score=28.22 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=36.3
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----C-CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----D-VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI 103 (205)
...-+|.|-. +||.+|.+....+.+. + +.+-.+|-+.|. .+.+..+...+|.+.+
T Consensus 47 ~~~~~v~fya-----pwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~----~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYA-----PWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK----DLCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEEC-----CCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH----HHHHhcCCccCcEEEE
Confidence 3456778888 9999999987776643 2 234444544444 5555667778888855
No 318
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=29.02 E-value=1.8e+02 Score=24.48 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhCCCCeEEEEccCCH----hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhc
Q psy221 58 GFSNAVVQILRMHDVPYDSHDVLKDE----SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQS 120 (205)
Q Consensus 58 p~C~~ak~lL~~~gV~~~e~DI~~d~----~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~ 120 (205)
..-..+.+.+..+++.+-.-||+.+- .-.+.++++.....+|.+.-+| |+..+++.++.+.
T Consensus 141 ~~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~ 205 (221)
T TIGR00734 141 ESLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGG--ISGVEDLELLKEM 205 (221)
T ss_pred ccHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHC
Confidence 34556777777788776677887541 1234455555556789777777 6777777766553
No 319
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=28.79 E-value=30 Score=30.42 Aligned_cols=25 Identities=28% Similarity=0.682 Sum_probs=18.8
Q ss_pred cccCCCCccccccccceeeEecCCCCccCCCceeE
Q psy221 160 KGEDNCGAYSKFHKERHISVECNTEESHTPGSFCM 194 (205)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 194 (205)
.-..+|.|=.+|+++ |.|.|||-|+
T Consensus 206 ~~~HSC~ae~Cynr~----------ep~vpGt~c~ 230 (278)
T PF15135_consen 206 RNTHSCFAEDCYNRR----------EPHVPGTSCA 230 (278)
T ss_pred ccccccchhhhcccc----------CCCCCCcccc
Confidence 345577777777665 5899999997
No 320
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=28.64 E-value=2.4e+02 Score=25.63 Aligned_cols=73 Identities=8% Similarity=0.074 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEE----------EccCCHhHHHHHHHH---h
Q psy221 27 YSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH----------DVLKDESIRNGIKEY---T 93 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~----------DI~~d~~~~~eL~~~---~ 93 (205)
.+=++.+++.++++..-+.||+- ..+.--.-+..+-..+.||+... .|..+|.+..++.++ .
T Consensus 48 dsf~~~~~~C~l~~~GV~AIfGp-----~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~ 122 (372)
T cd06387 48 NSFSVTNAFCSQFSRGVYAIFGF-----YDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHY 122 (372)
T ss_pred ChHHHHHHHHHHhhcccEEEEec-----CCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhc
Confidence 35567788889999999999988 67776777777778889998753 334556666666654 5
Q ss_pred CCCCccEEeeC
Q psy221 94 SWPTIPQVFIN 104 (205)
Q Consensus 94 g~~tvPqvFI~ 104 (205)
+|+.+=.|+=+
T Consensus 123 ~Wr~~~~iYd~ 133 (372)
T cd06387 123 KWEKFVYLYDT 133 (372)
T ss_pred CCCEEEEEecC
Confidence 88888888833
No 321
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=28.58 E-value=1.2e+02 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=13.3
Q ss_pred cEEEEEeeCCCCCCChH-HHHHHHHHH
Q psy221 43 KVVVFMKGVPEAPRCGF-SNAVVQILR 68 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~-C~~ak~lL~ 68 (205)
.|+.|.. .+|+. |..-...|+
T Consensus 25 ~vl~f~~-----~~C~~~C~~~l~~l~ 46 (142)
T cd02968 25 VLVYFGY-----THCPDVCPTTLANLA 46 (142)
T ss_pred EEEEEEc-----CCCcccCHHHHHHHH
Confidence 3444555 89997 986555553
No 322
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=28.12 E-value=1.7e+02 Score=26.12 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=40.4
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHHhCCCCccEEeeCCeE-eechh
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEYTSWPTIPQVFINGEF-VGGCD 112 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~~g~~tvPqvFI~G~~-IGG~d 112 (205)
..++|.+.| +....+.++.+.|++.|++.+.+|+..- |--.+.+.+.... +=..|.|...+ .||+-
T Consensus 202 ~di~iva~G----~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~-~~~vv~vEe~~~~gGlg 269 (327)
T PRK09212 202 SDVTIVTFS----IQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKK-TNRLVVVEEGWPFAGVG 269 (327)
T ss_pred CCEEEEEcc----HHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHh-CCeEEEEcCCCCCCCHH
Confidence 455665555 5677889999999999999999998542 2222233333221 22345555544 57775
No 323
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=27.87 E-value=2.1e+02 Score=25.52 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEc----------cCCHhHHHHHHH---HhC
Q psy221 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDV----------LKDESIRNGIKE---YTS 94 (205)
Q Consensus 28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI----------~~d~~~~~eL~~---~~g 94 (205)
+=++.+.+.++++..-+.|++- ....-+..+..+-+.++||+..... ...|.+..++.. ..+
T Consensus 43 sf~~~~~~C~~~~~GV~AI~Gp-----~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~ 117 (370)
T cd06389 43 SFAVTNAFCSQFSRGVYAIFGF-----YDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQ 117 (370)
T ss_pred hHHHHHHHHHHhhcCcEEEEec-----CCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcC
Confidence 5567788889999998999988 7778888888999999999876432 223444444443 358
Q ss_pred CCCccEEeeCCeEeechhHHHHH
Q psy221 95 WPTIPQVFINGEFVGGCDILLKL 117 (205)
Q Consensus 95 ~~tvPqvFI~G~~IGG~del~~l 117 (205)
|.++=.|+-+..-++..+++.+.
T Consensus 118 wk~vailYdsd~gl~~lq~l~~~ 140 (370)
T cd06389 118 WDKFAYLYDSDRGLSTLQAVLDS 140 (370)
T ss_pred CcEEEEEecCchHHHHHHHHHHh
Confidence 88888888655445555665554
No 324
>KOG4716|consensus
Probab=27.00 E-value=24 Score=32.78 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=18.8
Q ss_pred cHHHHHhhcCCccccceeecccCCC
Q psy221 122 ELVEQLEKGDQKRKQFILINYISGD 146 (205)
Q Consensus 122 eL~~~L~~~~~~~~~~~~~~~gcGg 146 (205)
.+..+.+.....+||+++||+|+||
T Consensus 7 ~~~~l~~~~~sydyDLIviGgGSgG 31 (503)
T KOG4716|consen 7 RHLPLARLFSSYDYDLIVIGGGSGG 31 (503)
T ss_pred cccchhhhcccCCccEEEEcCCcch
Confidence 3444455556679999999999998
No 325
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.74 E-value=4.2e+02 Score=24.61 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=33.9
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE 91 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~ 91 (205)
.....+||.. +...|+.+.+.|++.|+....+.=.+.++.|++..+
T Consensus 225 ~~~~~IIF~~------s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 225 KGKSGIIYCP------SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHH 270 (470)
T ss_pred CCCceEEEEC------cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHH
Confidence 3455678866 577889999999999998887776666665555543
No 326
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=26.43 E-value=1.7e+02 Score=26.61 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=42.6
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC----CHhHHHHHHHHhCCCCccEEee-CCeEeechh
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK----DESIRNGIKEYTSWPTIPQVFI-NGEFVGGCD 112 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~----d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~d 112 (205)
...|+|.+.| .....+.++.+.|++.||..+.+|+.. |.+...++.+.++ ..|.| ++...||+-
T Consensus 228 G~dvtIia~G----~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~----~vvtvEE~~~~GGlG 296 (356)
T PLN02683 228 GKDVTIVAFS----KMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTN----RLVTVEEGWPQHGVG 296 (356)
T ss_pred CCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcC----eEEEEeCCCcCCCHH
Confidence 3477777776 677889999999999999999999864 3333333332222 23555 445568875
No 327
>KOG0190|consensus
Probab=26.41 E-value=23 Score=33.85 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=26.1
Q ss_pred HHHHHHHHhc---CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCe
Q psy221 31 VQKSIDEMVK---KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPY 74 (205)
Q Consensus 31 ~~~~l~~~~~---~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~ 74 (205)
+.+-+++++. .+..+-|-+ |||++|++..-++++++-.|
T Consensus 372 Vgknfd~iv~de~KdVLvEfyA-----PWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 372 VGKNFDDIVLDEGKDVLVEFYA-----PWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred eecCHHHHhhccccceEEEEcC-----cccchhhhhhhHHHHHHHHh
Confidence 3445556653 233455767 99999999998887775443
No 328
>PTZ00110 helicase; Provisional
Probab=26.34 E-value=4.4e+02 Score=25.20 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHh-cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH
Q psy221 34 SIDEMV-KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE 91 (205)
Q Consensus 34 ~l~~~~-~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~ 91 (205)
.+.++. ...+++||.. +-..|..+...|+..+++...+.=++..+.|+++.+
T Consensus 369 ll~~~~~~~~k~LIF~~------t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 369 LLQRIMRDGDKILIFVE------TKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred HHHHhcccCCeEEEEec------ChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH
Confidence 334444 4568999976 456788999999988888776665666555555443
No 329
>KOG2454|consensus
Probab=26.13 E-value=1.3e+02 Score=28.53 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC-CHhHHHHHHHH
Q psy221 26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK-DESIRNGIKEY 92 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~-d~~~~~eL~~~ 92 (205)
|.+.-+..-+..+..-+.|||=..-...=++|-||+-+++.|+..|-+.+-+++-. -++.-+.|...
T Consensus 201 PfHN~lgPiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a~~ltSh 268 (583)
T KOG2454|consen 201 PFHNILGPIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTAEALTSH 268 (583)
T ss_pred chhhhhhHHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchHhHhhcC
Confidence 44566777778888888888754422222889999999999999999887777532 24444555444
No 330
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=25.81 E-value=1.4e+02 Score=26.01 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=46.6
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEE------EccCCHh----HHHHHHHHhCCCCcc-----EEeeCCeE
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH------DVLKDES----IRNGIKEYTSWPTIP-----QVFINGEF 107 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~------DI~~d~~----~~~eL~~~~g~~tvP-----qvFI~G~~ 107 (205)
++.+|+. -.=.+-..+.+.|+++||+|+.. .|.-+++ .+..|... |-|.-. .+|=.+..
T Consensus 20 ~~~Lysg-----L~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~Ar~~La~~-GLP~~g~~~~~~lFd~~~l 93 (249)
T PRK15348 20 DVDLYRS-----LPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLN-GYPHRQFTTADKMFPANQL 93 (249)
T ss_pred ChHHHcC-----CCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHHHHHHHHc-CCCCCCCccHHHhCCcccc
Confidence 4678876 45566789999999999999652 2222222 23333332 322211 13332333
Q ss_pred ee-chhHHHH--HHhcccHHHHHhhcCCc
Q psy221 108 VG-GCDILLK--LHQSGELVEQLEKGDQK 133 (205)
Q Consensus 108 IG-G~del~~--l~e~GeL~~~L~~~~~~ 133 (205)
+- -.|+-++ ...+|||.+.|......
T Consensus 94 ~~t~te~~qki~y~regELarTI~~idgV 122 (249)
T PRK15348 94 VVSPQEEQQKINFLKEQRIEGMLSQMEGV 122 (249)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 22 2333222 23369999999877543
No 331
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.80 E-value=3.3e+02 Score=22.82 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=51.6
Q ss_pred HHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221 37 EMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 37 ~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~ 116 (205)
+.+..++++--... ..=.....+-+.|.+.|++.-|+..... ...+.++++. ..+|.+.|+--.|=..+++.+
T Consensus 3 ~~l~~~~liaVlr~----~~~e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~--~~~~~~~vGAGTVl~~~~a~~ 75 (204)
T TIGR01182 3 ELLREAKIVPVIRI----DDVDDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLR--KEVPDALIGAGTVLNPEQLRQ 75 (204)
T ss_pred hHHhhCCEEEEEec----CCHHHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHH--HHCCCCEEEEEeCCCHHHHHH
Confidence 34455555443332 4555667888888999999999998654 3344444442 235788888777777888777
Q ss_pred HHhcc
Q psy221 117 LHQSG 121 (205)
Q Consensus 117 l~e~G 121 (205)
..+.|
T Consensus 76 a~~aG 80 (204)
T TIGR01182 76 AVDAG 80 (204)
T ss_pred HHHcC
Confidence 76655
No 332
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=25.74 E-value=2e+02 Score=21.61 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=28.0
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCe
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPY 74 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~ 74 (205)
....+.++|.|+...+.-|.-..+.+.|+++|++.
T Consensus 27 ~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 27 LGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp HTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSC
T ss_pred ccCCcEEEEEeecccccccccchHHHHHHHhCCCc
Confidence 45689999999985555566679999999999974
No 333
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=25.67 E-value=2.5e+02 Score=19.93 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHHHHHHh-cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221 31 VQKSIDEMV-KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93 (205)
Q Consensus 31 ~~~~l~~~~-~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~ 93 (205)
+.+.+.+.. ...+++||.. .-..+..+.+.|.+.+.++..+.=..++..+..+.+..
T Consensus 17 i~~~i~~~~~~~~~~lvf~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 17 LLELLKEHLKKGGKVLIFCP------SKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred HHHHHHhcccCCCcEEEEeC------cHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 333444433 3467888866 46678899999988777777666555555555555443
No 334
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.61 E-value=2.4e+02 Score=21.03 Aligned_cols=34 Identities=21% Similarity=0.051 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCCccEEeeCCeEee----chhHHHHHHh
Q psy221 86 RNGIKEYTSWPTIPQVFINGEFVG----GCDILLKLHQ 119 (205)
Q Consensus 86 ~~eL~~~~g~~tvPqvFI~G~~IG----G~del~~l~e 119 (205)
.+++++......+|...|+.+.-| +.+.+..+.+
T Consensus 64 ~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 64 FKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLIL 101 (104)
T ss_pred HHHHHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHH
Confidence 456666666778999999998666 5555555543
No 335
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.84 E-value=54 Score=31.22 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=32.3
Q ss_pred cccceeecccCCCCcccCcccCCCCccccCCCCccccccccc--eeeEecCCCCcc
Q psy221 134 RKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKER--HISVECNTEESH 187 (205)
Q Consensus 134 ~~~~~~~~~gcGgfv~C~~CsGS~k~~~~~~~g~~~~~~~~~--~~~~~c~~~~~~ 187 (205)
.|...+.|..||.-+.|..|+++-...-. .+..++-+|.. .++-.|+.+.|.
T Consensus 209 Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~--~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 209 GYSKNLLCRSCGYILCCPNCDVSLTYHKK--EGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred cCCCeeEhhhCcCccCCCCCCCceEEecC--CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 45556789999999999999987543322 22233333322 234567777765
No 336
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=24.75 E-value=41 Score=23.26 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221 61 NAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV 108 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I 108 (205)
+++|++|.+.+|+...++ .+|.|+.+++.|
T Consensus 21 k~lKk~~~e~kIP~~~R~------------------~~Pll~~~~~iv 50 (74)
T PF11734_consen 21 KKLKKLFQEAKIPPWQRD------------------RLPLLCDGGEIV 50 (74)
T ss_dssp EEHHHHHHHCT--HHHCC------------------CSEEEEETTEEE
T ss_pred chHHHHHHHcCCCHHHHC------------------cEEEEEECCEEE
Confidence 467777777777654443 689999998764
No 337
>PHA02558 uvsW UvsW helicase; Provisional
Probab=24.48 E-value=4.8e+02 Score=24.56 Aligned_cols=65 Identities=12% Similarity=0.010 Sum_probs=41.7
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEee-chh
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG-GCD 112 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IG-G~d 112 (205)
.+++|+.. . -.+++.+.+.|++.+++...+.=.+..+.|+++.+.........|...+..+| |+|
T Consensus 345 ~~~lV~~~-----~-~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 345 ENTFVMFK-----Y-VEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred CCEEEEEE-----E-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 44555555 2 23889999999999998877776666666666655544344445555666665 554
No 338
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=24.47 E-value=1.1e+02 Score=22.54 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.7
Q ss_pred ccEEeeCCeEeechh
Q psy221 98 IPQVFINGEFVGGCD 112 (205)
Q Consensus 98 vPqvFI~G~~IGG~d 112 (205)
-|.|..+++.+=|++
T Consensus 90 RPIi~~~~~~~iGf~ 104 (105)
T cd03035 90 RPVLETGGKVLVGFS 104 (105)
T ss_pred cceEEeCCEEEEeeC
Confidence 388887877666665
No 339
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=23.56 E-value=5.1e+02 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHhC-----CCCeEEEEccCC
Q psy221 55 PRCGFSNAVVQILRMH-----DVPYDSHDVLKD 82 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d 82 (205)
-+|..+.+++-+|+.+ .+.|.-+||+.+
T Consensus 83 LGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 83 LGSGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred ECCCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 5788999999998765 245777787643
No 340
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=23.51 E-value=4.2e+02 Score=23.72 Aligned_cols=85 Identities=8% Similarity=0.037 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEE----------EccCCHhHHHHHHHH---h
Q psy221 27 YSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH----------DVLKDESIRNGIKEY---T 93 (205)
Q Consensus 27 ~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~----------DI~~d~~~~~eL~~~---~ 93 (205)
.+=++.+++.++++..-+.|++- ..+.--.-+..+-.++.||+... -|.+.|....++.++ .
T Consensus 41 dsf~~~~~~C~~~~~gV~AI~Gp-----~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~~ 115 (364)
T cd06390 41 DSFEMTYTFCSQFSKGVYAIFGF-----YDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISVIEHY 115 (364)
T ss_pred cHHHHHHHHHHHhhcCceEEEcc-----CChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHHHHHHc
Confidence 36677788889999998999987 56666666666777888886643 233445555555544 5
Q ss_pred CCCCccEEeeCCeEeechhHHHH
Q psy221 94 SWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 94 g~~tvPqvFI~G~~IGG~del~~ 116 (205)
+|+.+=.|+-++.-.++.+++.+
T Consensus 116 ~W~~v~iIYd~d~g~~~lq~l~~ 138 (364)
T cd06390 116 KWQKFVYIYDADRGLSVLQKVLD 138 (364)
T ss_pred CCcEEEEEEeCCccHHHHHHHHH
Confidence 89999889966644455544433
No 341
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=23.10 E-value=4.8e+02 Score=23.60 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=50.8
Q ss_pred hhhhcCCCCCCChHHHHHHHHHhc-CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC
Q psy221 17 SRFHNAWRTPYSTDVQKSIDEMVK-KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW 95 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~ 95 (205)
++||+. ..+.+.++.+.+++. +.|.+|+++++ +.+....+.-++++++.-.-+.... ++-..|..+...
T Consensus 59 ~~f~~~---~~~~~r~~~i~~~~~~~~P~iI~sk~~------~~p~~l~~~a~~~~~pil~s~~~ts-~l~~~l~~yL~~ 128 (308)
T COG1493 59 SSFLNQ---LSSEERKKRIGKLFSLDTPALIVSKGL------PIPEELLDAAKKYNIPILTSKLSTS-ELSFTLTNYLSR 128 (308)
T ss_pred HHHHHh---cChhhHHHHHHHHhCcCCCEEEEECCC------CCCHHHHHHHHHcCCceEEecchHH-HHHHHHHHHhhh
Confidence 666666 334556677888886 57899999864 3347888888999999887776532 333444444444
Q ss_pred CCccEEeeCC
Q psy221 96 PTIPQVFING 105 (205)
Q Consensus 96 ~tvPqvFI~G 105 (205)
+--|++-+.|
T Consensus 129 ~lA~~~~vHG 138 (308)
T COG1493 129 PLAERVNVHG 138 (308)
T ss_pred hcccceeeee
Confidence 4444444444
No 342
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.07 E-value=2.2e+02 Score=21.04 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCCccEEeeCCeEee
Q psy221 85 IRNGIKEYTSWPTIPQVFINGEFVG 109 (205)
Q Consensus 85 ~~~eL~~~~g~~tvPqvFI~G~~IG 109 (205)
..+.+++......+|...|+.+.-|
T Consensus 60 ~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 60 YYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 4556666666778999999976655
No 343
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=22.94 E-value=1.7e+02 Score=22.61 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221 61 NAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g 94 (205)
+++.++|++++++|+.+.......-.+++.+..|
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~ 35 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALG 35 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcC
Confidence 4789999999999998887743333455555555
No 344
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=22.88 E-value=2.6e+02 Score=23.10 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=26.4
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHH---hCCCCe------EEEEccCC
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILR---MHDVPY------DSHDVLKD 82 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~---~~gV~~------~e~DI~~d 82 (205)
-.+|-|.. .||+.|+.-.-+|. ..|+++ .-+|++++
T Consensus 61 V~lvn~~A-----swc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 61 VRVVHHIA-----GRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred EEEEEEEe-----cCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 34566888 89999998777765 457888 77777654
No 345
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=22.80 E-value=2.6e+02 Score=25.10 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCeEEEEccCC---------HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcccHHHHHhhcC
Q psy221 61 NAVVQILRMHDVPYDSHDVLKD---------ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGD 131 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d---------~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~GeL~~~L~~~~ 131 (205)
..+..+|+..|+..-.+|=-.+ .++...|+.+++.-.+|.|-| |--+-+..++.+-+|...+....
T Consensus 135 ~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-----Gt~~A~~al~~D~QLa~RF~~~~ 209 (302)
T PF05621_consen 135 QQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-----GTREAYRALRTDPQLASRFEPFE 209 (302)
T ss_pred HHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-----ccHHHHHHhccCHHHHhccCCcc
Confidence 3466788888888766663322 466777788878889999955 44566666666666666655544
Q ss_pred Cc
Q psy221 132 QK 133 (205)
Q Consensus 132 ~~ 133 (205)
.+
T Consensus 210 Lp 211 (302)
T PF05621_consen 210 LP 211 (302)
T ss_pred CC
Confidence 33
No 346
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=22.79 E-value=1.1e+02 Score=21.53 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=19.4
Q ss_pred HHHHHHHHhC---CCCeEEEEccCCHhHHHH
Q psy221 61 NAVVQILRMH---DVPYDSHDVLKDESIRNG 88 (205)
Q Consensus 61 ~~ak~lL~~~---gV~~~e~DI~~d~~~~~e 88 (205)
++++++++++ ....+.+||.++|+..+.
T Consensus 20 ~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~ 50 (72)
T cd02978 20 QNLKRILEELLGGPYELEVIDVLKQPQLAEE 50 (72)
T ss_pred HHHHHHHHHhcCCcEEEEEEEcccCHhHHhh
Confidence 3455666655 456789999999986553
No 347
>KOG3171|consensus
Probab=22.73 E-value=1.7e+02 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCccEEee--CCeEeechhHHHH----HHhcccHHHHHhhcCCc
Q psy221 96 PTIPQVFI--NGEFVGGCDILLK----LHQSGELVEQLEKGDQK 133 (205)
Q Consensus 96 ~tvPqvFI--~G~~IGG~del~~----l~e~GeL~~~L~~~~~~ 133 (205)
..+|.+.| +|++||.|-.|-+ -+..|+|...|...+..
T Consensus 210 n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 45787655 9999999865544 35568999999887653
No 348
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=22.56 E-value=1.1e+02 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=18.3
Q ss_pred CCccEEeeCCeEeechh--HHHHHHhcc
Q psy221 96 PTIPQVFINGEFVGGCD--ILLKLHQSG 121 (205)
Q Consensus 96 ~tvPqvFI~G~~IGG~d--el~~l~e~G 121 (205)
..-|.+.|||++++... .+.++.++|
T Consensus 45 ~~gP~v~V~~~~~~~~t~~~i~~~~~~~ 72 (72)
T cd03082 45 ERAPAALVGQRPVDGATPAAVAAAVEAG 72 (72)
T ss_pred CCCCeEEECCEEeCCcCHHHHHHHHhcC
Confidence 45799999999987764 455555443
No 349
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=22.51 E-value=6.7e+02 Score=23.74 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCeEEEEccCCHhHHHHHHH
Q psy221 62 AVVQILRMHDVPYDSHDVLKDESIRNGIKE 91 (205)
Q Consensus 62 ~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~ 91 (205)
+++.+|+..+++++.+--......++..++
T Consensus 134 ~v~~~L~~~gi~~~v~~T~~~ghA~~la~~ 163 (481)
T PLN02958 134 VVKPLLEDADIQLTIQETKYQLHAKEVVRT 163 (481)
T ss_pred HHHHHHHHcCCeEEEEeccCccHHHHHHHH
Confidence 567799999999887654433333343333
No 350
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=22.48 E-value=78 Score=25.06 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=22.3
Q ss_pred CcccCcccCCCCccccCCCCccccccccceeeEecCCCCccCC
Q psy221 147 AVRCYECSSAQDPKGEDNCGAYSKFHKERHISVECNTEESHTP 189 (205)
Q Consensus 147 fv~C~~CsGS~k~~~~~~~g~~~~~~~~~~~~~~c~~~~~~~~ 189 (205)
||.|+.|...--...- +++...+.|.++.++.|
T Consensus 102 yVlC~~C~spdT~l~k----------~~r~~~l~C~ACGa~~~ 134 (138)
T PRK03988 102 YVICPECGSPDTKLIK----------EGRIWVLKCEACGAETP 134 (138)
T ss_pred cEECCCCCCCCcEEEE----------cCCeEEEEcccCCCCCc
Confidence 5899999876443321 23457888888887766
No 351
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=21.95 E-value=1.4e+02 Score=23.34 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=21.5
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEc
Q psy221 44 VVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDV 79 (205)
Q Consensus 44 VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI 79 (205)
|.+|+- ..||||.-+...|+ .++++++.+-+
T Consensus 1 i~~~~D-----~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFD-----FSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEe-----CCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 347777 89999999877775 44665554433
No 352
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=21.92 E-value=1.2e+02 Score=25.16 Aligned_cols=60 Identities=8% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcccHHHH
Q psy221 63 VVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQ 126 (205)
Q Consensus 63 ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~GeL~~~ 126 (205)
++++=+++||+++...+ ...++.+.|.........|.++| .+...+.+..+.+.|.|.++
T Consensus 3 ~~~f~~~~~i~V~~~~~-~~~~~~~~l~~~~~~g~~Pd~dv---~~~~~~~~~~~~~~g~l~~L 62 (281)
T PF13416_consen 3 VKEFEKETGIKVEIQTF-PSDDYQQKLQSALASGNAPDIDV---VWPDSSWIPQLAEQGLLEDL 62 (281)
T ss_dssp HHHHHHHHTEEEEEEEE-SHHHHHHHHHHHHHTTSSSSESE---EEEEHHHHHHHHHTTHBEHH
T ss_pred HHHHHHHhCcEEEEEeC-CcHHHHHHHHhhhcCCCccceEE---EEECHHHHHHHHHCCCcccc
Confidence 45555677888877777 33566666666544445775433 22333556666666666544
No 353
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=1.1e+02 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=18.1
Q ss_pred CCCCccEEeeCCeEeechhHHHH
Q psy221 94 SWPTIPQVFINGEFVGGCDILLK 116 (205)
Q Consensus 94 g~~tvPqvFI~G~~IGG~del~~ 116 (205)
|....|.+||+|+.+.|.-.+.+
T Consensus 212 gv~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 212 GVNGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred CCCcCCeEEECCeeecCCCCHHH
Confidence 56788999999998888765433
No 354
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.75 E-value=2e+02 Score=20.86 Aligned_cols=26 Identities=31% Similarity=0.288 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCCccEEeeCCeEeech
Q psy221 86 RNGIKEYTSWPTIPQVFINGEFVGGC 111 (205)
Q Consensus 86 ~~eL~~~~g~~tvPqvFI~G~~IGG~ 111 (205)
.+++++......+|...|+.+..|-.
T Consensus 64 ~~~i~~~~~~~~ipv~~I~~~~Y~~m 89 (95)
T TIGR00853 64 LPDLKKETDKKGIPVEVINGAQYGKL 89 (95)
T ss_pred HHHHHHHhhhcCCCEEEeChhhcccC
Confidence 44555555555678888887655543
No 355
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=21.69 E-value=2.4e+02 Score=25.58 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=40.0
Q ss_pred CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-----HhHHHHHHHHhCCCCccEE--eeCCe-Eeechh
Q psy221 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-----ESIRNGIKEYTSWPTIPQV--FINGE-FVGGCD 112 (205)
Q Consensus 41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-----~~~~~eL~~~~g~~tvPqv--FI~G~-~IGG~d 112 (205)
..+.+||.. +...+|. .+...-+|+....+.++++ .++++.|.+......+|.+ ..-|. .-|..|
T Consensus 139 ~~~~~i~~s-----~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D 211 (373)
T PF00282_consen 139 IPKPVIYVS-----EQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID 211 (373)
T ss_dssp CSSEEEEEE-----TTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-
T ss_pred ccccccccc-----cccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCccccccc
Confidence 346788877 6666665 6667777888877777763 2344444444334456733 33454 457788
Q ss_pred HHHHH
Q psy221 113 ILLKL 117 (205)
Q Consensus 113 el~~l 117 (205)
++.++
T Consensus 212 ~l~~i 216 (373)
T PF00282_consen 212 PLEEI 216 (373)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 87664
No 356
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.55 E-value=6.4e+02 Score=23.16 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCc-EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHHhCCCCccEEeeCCeE
Q psy221 30 DVQKSIDEMVKKSK-VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEYTSWPTIPQVFINGEF 107 (205)
Q Consensus 30 ~~~~~l~~~~~~~~-VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~~g~~tvPqvFI~G~~ 107 (205)
-.-+.+.+++...+ +-+-.+. . .-..+.+.+.++.-.+...|+.+- .+-.+.|+++.....+|.|++-.-.
T Consensus 12 l~R~~i~~~l~~~~~i~vv~~a-----~--ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVimvsslt 84 (350)
T COG2201 12 LMRKVISDILNSDPDIEVVGTA-----R--NGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMVSSLT 84 (350)
T ss_pred HHHHHHHHHHhcCCCeEEEEec-----C--CHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEEEeccc
Confidence 34455677777655 5555441 1 226888888888888888888764 3445677777666889999987633
Q ss_pred eechhHHHHHHh
Q psy221 108 VGGCDILLKLHQ 119 (205)
Q Consensus 108 IGG~del~~l~e 119 (205)
--|.+...+..+
T Consensus 85 ~~g~~~t~~al~ 96 (350)
T COG2201 85 EEGAEATLEALE 96 (350)
T ss_pred cccHHHHHHHHh
Confidence 233444444333
No 357
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=21.48 E-value=2e+02 Score=22.43 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeE
Q psy221 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYD 75 (205)
Q Consensus 30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~ 75 (205)
...+.+-+......+.++|.|+...+.-+-=..+.++|+++|+++.
T Consensus 17 pmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~ 62 (139)
T COG0394 17 PMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS 62 (139)
T ss_pred HHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 3444444433337899999997534333334589999999999754
No 358
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=21.40 E-value=2.2e+02 Score=23.27 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe-echhH--HHHHHhcccHHHHHhhc
Q psy221 61 NAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV-GGCDI--LLKLHQSGELVEQLEKG 130 (205)
Q Consensus 61 ~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I-GG~de--l~~l~e~GeL~~~L~~~ 130 (205)
..-.+.|++.|+++..++...+ ..+|. .|+-.+ ||..+ +..|.++..+.+.|++.
T Consensus 14 ~e~~~~l~~~G~~v~~~s~~~~-------------~~l~~--~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~ 71 (198)
T cd03130 14 PENLELLEAAGAELVPFSPLKD-------------EELPD--ADGLYLGGGYPELFAEELSANQSMRESIRAF 71 (198)
T ss_pred HHHHHHHHHCCCEEEEECCCCC-------------CCCCC--CCEEEECCCchHHHHHHHHhhHHHHHHHHHH
Confidence 3556777788877666553212 12332 344343 24433 34565554566666654
No 359
>KOG4022|consensus
Probab=21.34 E-value=5e+02 Score=21.84 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=48.7
Q ss_pred cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH-------------------hHHHHHHHHhCCCCc-c
Q psy221 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-------------------SIRNGIKEYTSWPTI-P 99 (205)
Q Consensus 40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-------------------~~~~eL~~~~g~~tv-P 99 (205)
+..+|+||.. ++. .--...++|+..+..+-.+|+.+++ .+.++.-+..+...+ -
T Consensus 2 sagrVivYGG--kGA----LGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 2 SAGRVIVYGG--KGA----LGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CCceEEEEcC--cch----HhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 3568999965 222 2235567888888877777776532 122222233344455 4
Q ss_pred EEeeCCeEeechhHHHHHHhcccH
Q psy221 100 QVFINGEFVGGCDILLKLHQSGEL 123 (205)
Q Consensus 100 qvFI~G~~IGG~del~~l~e~GeL 123 (205)
.+.|-|-.-||...-+.|.++-+|
T Consensus 76 v~CVAGGWAGGnAksKdl~KNaDL 99 (236)
T KOG4022|consen 76 VFCVAGGWAGGNAKSKDLVKNADL 99 (236)
T ss_pred EEEeeccccCCCcchhhhhhchhh
Confidence 556788889998777777777666
No 360
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=21.26 E-value=3.2e+02 Score=24.44 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=39.4
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHHhCCCCccEEee-CCeEeechhH
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDI 113 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~de 113 (205)
..++|.+.| .....|.+|.+.|++.||..+.+|+..- |--.+.|.+.... +=-.|.+ ++...||+-+
T Consensus 202 ~ditiia~G----~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~-t~~vv~vEE~~~~gGlG~ 270 (327)
T CHL00144 202 NDITILTYS----RMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKK-THKVLIVEECMKTGGIGA 270 (327)
T ss_pred CCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHh-hCcEEEEECCCCCCCHHH
Confidence 345555444 4566899999999999999999998542 2222233322211 1123334 4445688753
No 361
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=20.73 E-value=1.8e+02 Score=28.47 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=41.7
Q ss_pred CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHHhCCCCccEEeeCC-eEeechh
Q psy221 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEYTSWPTIPQVFING-EFVGGCD 112 (205)
Q Consensus 42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~~g~~tvPqvFI~G-~~IGG~d 112 (205)
..|+|.+.| ..-+.+.+|.+.|++.|+..+.+|+..- |--.+.+.+.. ..+-+.|.|.. ...||+-
T Consensus 496 ~dvtIva~G----~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~-~k~~~vvtvEE~~~~GGlG 563 (617)
T TIGR00204 496 EKILILGFG----TLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIA-ASHEKLVTVEENAIMGGAG 563 (617)
T ss_pred CCEEEEEcC----HHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHH-hhcCeEEEEECCCCccChH
Confidence 456666555 5566788999999999999999998642 22223333332 23445666654 4568864
No 362
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.64 E-value=1.9e+02 Score=20.91 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCCccEEeeCCeEeechh
Q psy221 86 RNGIKEYTSWPTIPQVFINGEFVGGCD 112 (205)
Q Consensus 86 ~~eL~~~~g~~tvPqvFI~G~~IGG~d 112 (205)
.+++++......+|...|+.+..|-.+
T Consensus 60 ~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 60 LDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHhccCCCcEEEcChHhcccCC
Confidence 344555456778999999987766443
No 363
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.57 E-value=97 Score=22.04 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHHHhCCCCeEEEE
Q psy221 55 PRCGFSNAVVQILRMHDVPYDSHD 78 (205)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gV~~~e~D 78 (205)
..-.++.++-++|++++|+|+-.-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec
Confidence 345789999999999999987554
No 364
>PRK10670 hypothetical protein; Provisional
Probab=20.53 E-value=1.5e+02 Score=23.63 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCeEEEEccCCHh---HHHHHHHHhCCC---CccEEee
Q psy221 62 AVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTSWP---TIPQVFI 103 (205)
Q Consensus 62 ~ak~lL~~~gV~~~e~DI~~d~~---~~~eL~~~~g~~---tvPqvFI 103 (205)
.+.++|++.+|+|+.++++.++. ..+++.+..|.+ .+-.|++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~ 50 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLV 50 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEE
Confidence 57899999999999977654432 124555555532 4555655
No 365
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=20.44 E-value=5e+02 Score=21.51 Aligned_cols=92 Identities=10% Similarity=0.145 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHhc--CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC-eEEEEcc-----CCHhHHHHHHHHhCCCCcc
Q psy221 28 STDVQKSIDEMVK--KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP-YDSHDVL-----KDESIRNGIKEYTSWPTIP 99 (205)
Q Consensus 28 ~~~~~~~l~~~~~--~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~-~~e~DI~-----~d~~~~~eL~~~~g~~tvP 99 (205)
..++.+++-++.. ..+|++-.+. ..+.+.++.+..+.|+++|+. .+..++. .+++..+.|.+ .-
T Consensus 14 ~~~i~~~~~~~ag~~~~~i~~iptA--~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~------ad 85 (217)
T cd03145 14 NRAILQRFVARAGGAGARIVVIPAA--SEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRD------AD 85 (217)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEeCC--CcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHh------CC
Confidence 4445555555543 3455554332 123477889999999999985 6666665 35555555554 35
Q ss_pred EEeeCCeEeechhHHHHHHhcccHHHHHhhc
Q psy221 100 QVFINGEFVGGCDILLKLHQSGELVEQLEKG 130 (205)
Q Consensus 100 qvFI~G~~IGG~del~~l~e~GeL~~~L~~~ 130 (205)
.||+.| |....+.+....-.|.+.|+..
T Consensus 86 ~I~~~G---G~~~~~~~~l~~t~l~~~l~~~ 113 (217)
T cd03145 86 GIFFTG---GDQLRITSALGGTPLLDALRKV 113 (217)
T ss_pred EEEEeC---CcHHHHHHHHcCChHHHHHHHH
Confidence 566655 2223334433333455566543
No 366
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=20.33 E-value=2.5e+02 Score=23.17 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHhc--CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC-CCCccEEe
Q psy221 26 PYSTDVQKSIDEMVK--KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS-WPTIPQVF 102 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~--~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g-~~tvPqvF 102 (205)
..+..+-..+...+. ..+.++||.+ .+++.+|..+|+++.+.=...-..+.++-..+.. +..-|+|+
T Consensus 99 g~~~~l~~~l~~~L~~~g~~w~vfTaT----------~~lr~~~~rlgl~~~~La~Ad~~rl~~~~~~WGsYY~~~P~V~ 168 (179)
T PF12261_consen 99 GAARLLFAALAQLLAQQGFEWVVFTAT----------RQLRNLFRRLGLPPTVLADADPSRLGDDRASWGSYYDHQPQVM 168 (179)
T ss_pred ccHHHHHHHHHHHHHHCCCCEEEEeCC----------HHHHHHHHHcCCCceeccccCHhHcCcChhhhhhhhcCCCeEE
Confidence 334444444555553 3578899874 6999999999999877654322222233333322 34669998
Q ss_pred eCC
Q psy221 103 ING 105 (205)
Q Consensus 103 I~G 105 (205)
+..
T Consensus 169 a~~ 171 (179)
T PF12261_consen 169 AGD 171 (179)
T ss_pred EEE
Confidence 753
No 367
>PF13156 Mrr_cat_2: Restriction endonuclease
Probab=20.25 E-value=2.3e+02 Score=22.25 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHhc---CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEcc
Q psy221 26 PYSTDVQKSIDEMVK---KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVL 80 (205)
Q Consensus 26 ~~~~~~~~~l~~~~~---~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~ 80 (205)
-.+.++..++.+.-+ .++++|.++ . .+...|.++|+...+++..+++.
T Consensus 58 I~k~didSF~s~sgk~~f~~rliisTt-----~--~~s~nAe~~l~~q~~pv~ri~l~ 108 (129)
T PF13156_consen 58 IQKSDIDSFFSASGKSRFSRRLIISTT-----D--KWSKNAEKALENQSIPVSRIGLS 108 (129)
T ss_pred EcHHHhhHHHHhcCCccccCcEEEEcC-----c--HhhHHHHHHHHcCCCCeEEEcHH
Confidence 335666666666443 346777766 3 78899999999999999998864
No 368
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=20.12 E-value=2.4e+02 Score=26.69 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=38.8
Q ss_pred cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHHhCCCCccEEee-CCeEeechh
Q psy221 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCD 112 (205)
Q Consensus 43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~d 112 (205)
.|+|.+.| .....+.++.+.|++.||..+.+|+..- |--.+.+.+.... +=-.|.+ ++...||+-
T Consensus 342 DvtIva~G----~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~k-t~~vvtvEE~~~~gGlG 408 (464)
T PRK11892 342 DVTIVSFS----IGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKK-TNRLVTVEEGWPQSGVG 408 (464)
T ss_pred CEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHh-cCeEEEEeCCCcCCcHH
Confidence 45555554 4566899999999999999999998642 2112223322211 1123444 555568875
Done!